BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044692
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC
PE=3 SV=1
Length = 112
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 50/93 (53%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SKSNQYPNTSL+ IEGVNT+EEV PHGNS
Sbjct: 24 SKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNS 83
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
GVVRAKF SNLPP + G RVRV MYP NI
Sbjct: 84 GVVRAKFTSNLPPK----SMGSRVRVFMYPSNI 112
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB
PE=3 SV=1
Length = 111
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 50/93 (53%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SKSNQYPNTSLI IEGVNT+EEV PHGNS
Sbjct: 23 SKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNS 82
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
GVVR+KF SNLPP + G RVRV MYP NI
Sbjct: 83 GVVRSKFTSNLPPK----SMGARVRVFMYPSNI 111
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA
PE=3 SV=1
Length = 112
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 49/93 (52%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SKSNQYPNTSL+ +EGVNT EEV PHGNS
Sbjct: 24 SKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNS 83
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
GVVRAKF SNLPP + G RVRV MYP NI
Sbjct: 84 GVVRAKFTSNLPPK----SMGSRVRVFMYPSNI 112
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD
PE=3 SV=2
Length = 111
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 50/93 (53%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SKSNQYPNTSL+ IEGVNT+EEV PHGNS
Sbjct: 23 SKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNS 82
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
GVVR+KF SNLPP + G RVRV MYP NI
Sbjct: 83 GVVRSKFTSNLPPK----SMGARVRVFMYPSNI 111
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33a PE=3 SV=2
Length = 108
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SK +P TSL+ IEG ++KEE PHGNS
Sbjct: 20 SKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNS 79
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
GVVRA+F NLPP + G +RV++YP N+
Sbjct: 80 GVVRARFTHNLPPKTF----GASLRVMLYPSNV 108
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a
PE=3 SV=1
Length = 105
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 37/94 (39%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEVP---------------------------------HGN 27
S++ QYPN SLI IEGV ++E+ HG+
Sbjct: 16 SQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGS 75
Query: 28 SGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
SGVV+A+F NLPP G VRV++YP NI
Sbjct: 76 SGVVQARFARNLPPKAM----GAPVRVMLYPSNI 105
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1
SV=3
Length = 124
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 4/38 (10%)
Query: 24 PHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
PHGN+G VRAKF N+PPS G R+RV++YP NI
Sbjct: 91 PHGNAGAVRAKFHHNIPPSAL----GKRIRVLLYPSNI 124
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33b PE=1 SV=1
Length = 108
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 36/93 (38%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
SK +P TS++ IEG ++KEE PHGNS
Sbjct: 20 SKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNS 79
Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
G VRA+F NLP + G +RV++YP NI
Sbjct: 80 GAVRARFVHNLPAKTF----GSSLRVMLYPSNI 108
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2
Length = 107
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 36/87 (41%)
Query: 7 PNTSLIHIEGVNTKEEV--------------------------------PHGNSGVVRAK 34
PN SLI IEGV T +E HGNSGVVRA
Sbjct: 25 PNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRAT 84
Query: 35 FKSNLPPSPWYLNHGDRVRVVMYPGNI 61
F++NLP + G VR+ +YP NI
Sbjct: 85 FRNNLPAKTF----GASVRIFLYPSNI 107
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3
SV=1
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2
Length = 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2
Length = 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ IEGV ++E HG
Sbjct: 20 NQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF+SNLP G R+RV++YP I
Sbjct: 80 NSGMVRAKFRSNLPAKAI----GHRIRVMLYPSRI 110
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33A PE=1 SV=3
Length = 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 36/87 (41%)
Query: 7 PNTSLIHIEGVNTKEEV--------------------------------PHGNSGVVRAK 34
PN SLI IEGV T ++ HGNSGVVRA
Sbjct: 25 PNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRAT 84
Query: 35 FKSNLPPSPWYLNHGDRVRVVMYPGNI 61
F++NLP + G VR+ +YP NI
Sbjct: 85 FRNNLPAKTF----GASVRIFLYPSNI 107
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3
SV=1
Length = 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 41/95 (43%)
Query: 4 NQYPNTSLIHIEGVNTKEEV-------------------------------------PHG 26
NQ +T+L+ +EGV ++ EV HG
Sbjct: 20 NQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHG 79
Query: 27 NSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
NSG+VRAKF SNLPP G R+RV++YP +
Sbjct: 80 NSGMVRAKFTSNLPPKAI----GHRIRVMLYPSRV 110
>sp|P0DJ22|RL35A_TETTS 60S ribosomal protein L35a OS=Tetrahymena thermophila (strain
SB210) GN=RPL35A PE=1 SV=1
Length = 113
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 35/89 (39%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEVP-------------------------------HGNSG 29
SK Q N +L+ ++ VNTKE+V HGN+G
Sbjct: 26 SKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNG 85
Query: 30 VVRAKFKSNLPPSPWYLNHGDRVRVVMYP 58
V A+F NLPP G +RV++YP
Sbjct: 86 VAVARFAHNLPPQAI----GSVLRVMLYP 110
>sp|A7MR73|YGFZ_CROS8 tRNA-modifying protein YgfZ OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=ESA_00433 PE=3 SV=1
Length = 329
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 3 SNQY-PNTSLIH-IEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYL-NHGDRV 52
SNQ+ P + I + G++ K+ G V RAKF+ S WYL HG RV
Sbjct: 206 SNQFIPQATNIQALGGISFKKGCYAGQEMVARAKFRGANKRSLWYLAGHGSRV 258
>sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl35ae PE=3 SV=1
Length = 87
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 28/79 (35%)
Query: 1 SKSNQYPNTSLIHIEGVNTKEEVP------------------------HGNSGVVRAKFK 36
SK NQ+ N +I VN++EE HG G VRA+F+
Sbjct: 13 SKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRVHGTKGAVRARFE 72
Query: 37 SNLPPSPWYLNHGDRVRVV 55
LP GD V ++
Sbjct: 73 KGLPGQAL----GDYVEII 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,097,903
Number of Sequences: 539616
Number of extensions: 800169
Number of successful extensions: 1185
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 34
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)