BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044693
         (897 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GUI|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY--Apo Structure
          Length = 164

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 428 IFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDIL 487
           ++  LD V        V Q+     A F    +ML++KR    W   AV+        + 
Sbjct: 87  VYDSLDAVRRXAAINEVFQMGVTGVAGFTNVLRMLQQKR----WDEAAVN--------LA 134

Query: 488 NIKWVGECLDKAKKLTRFIYNSTW 511
             +W  +C D+AK++       TW
Sbjct: 135 KSRWYNQCPDRAKRVITTFRTGTW 158


>pdb|3GUJ|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Benzene Binding
 pdb|3GUK|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Toluene Binding
 pdb|3GUK|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Toluene Binding
 pdb|3GUL|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Ethylbenzene Binding
 pdb|3GUL|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Ethylbenzene Binding
 pdb|3GUM|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY--P- Xylene Binding
 pdb|3GUM|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY--P- Xylene Binding
 pdb|3GUN|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Aniline Binding
 pdb|3GUN|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
           CAVITY-- Aniline Binding
 pdb|3GUO|A Chain A, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
           Cavity-- Phenol Binding
 pdb|3GUO|B Chain B, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
           Cavity-- Phenol Binding
 pdb|3GUP|A Chain A, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
           Cavity-- Pyridine Binding
 pdb|3GUP|B Chain B, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
           Cavity-- Pyridine Binding
          Length = 164

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 428 IFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDIL 487
           ++  LD V        V Q+     A F    +ML++KR    W   AV+        + 
Sbjct: 87  VYDSLDAVRRXAAINEVFQMGVTGVAGFTNVLRMLQQKR----WDEAAVN--------LA 134

Query: 488 NIKWVGECLDKAKKLTRFIYNSTW 511
             +W  +C D+AK++       TW
Sbjct: 135 KSRWYNQCPDRAKRVITTFRTGTW 158


>pdb|4E97|A Chain A, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
 pdb|4E97|B Chain B, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
 pdb|4EKP|A Chain A, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
 pdb|4EKP|B Chain B, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
 pdb|4EKQ|A Chain A, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
 pdb|4EKQ|B Chain B, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
 pdb|4EKR|A Chain A, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
 pdb|4EKR|B Chain B, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
 pdb|4EKS|A Chain A, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
 pdb|4EKS|B Chain B, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
          Length = 187

 Score = 31.6 bits (70), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 428 IFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDIL 487
           ++  LD V       +V Q+     A F    +ML++KR    W   AV+        + 
Sbjct: 110 VYDSLDAVRRCAAINHVFQMGVTGVAGFTNVLRMLQQKR----WDEAAVN--------LA 157

Query: 488 NIKWVGECLDKAKKLTRFIYNSTW 511
             +W  +C D+AK++       TW
Sbjct: 158 KSRWYNQCPDRAKRVITTFRTGTW 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,492,267
Number of Sequences: 62578
Number of extensions: 1017294
Number of successful extensions: 2206
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2206
Number of HSP's gapped (non-prelim): 11
length of query: 897
length of database: 14,973,337
effective HSP length: 108
effective length of query: 789
effective length of database: 8,214,913
effective search space: 6481566357
effective search space used: 6481566357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)