BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044693
(897 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80WQ9|ZBED4_MOUSE Zinc finger BED domain-containing protein 4 OS=Mus musculus GN=Zbed4
PE=2 SV=1
Length = 1168
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 143/373 (38%), Gaps = 59/373 (15%)
Query: 459 GKMLEEKRRNLFWTPCAVDCIDRMLDDILN-----IKWVGECLDKAKKLTRFIYNSTWL- 512
GKML E + +V C ++ I++ + V L A+KL ++ S
Sbjct: 813 GKMLSEGEHS------SVQCFSHTVNLIVSEAIKSQRMVQNLLSIARKLCERVHRSPRAR 866
Query: 513 --LNVMKKEFTKGQ-ELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSD 569
L ++KE+ Q +L++ +K++TSF+ L+ L++Q+ + + + F +
Sbjct: 867 EKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNEVS-----IECNFRE-- 919
Query: 570 EGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKID---STESRSISFLYNDMYRAKLAI 626
+++ W+ MQ V L P +++ ST S+ I ++ + ++
Sbjct: 920 --------LISCDQWEVMQSVCHVLRPFDAASREMSAHMSTLSQVIPMIHILSRKVEMLF 971
Query: 627 KAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYR-----------YRPDFIM 675
G D + S+ ++ H P ++ A L+P Y+ YR D I
Sbjct: 972 GETMGIDTM-LKSLKEAMASRLSATLHDPRYIFATLLDPRYKASLFTEEEAEQYRQDLIR 1030
Query: 676 HPEIIRGLNECIVRLE--------VDNGKRISASMQIPDFVSARADFGTDLAISTRSE-- 725
EI+ +E D G S P R D+ ++ E
Sbjct: 1031 ELEILNSTSEDTATSNGCDSGSPLKDTGTEESLWSLAPIKRDQREKLPEDMVLAYLEEEV 1090
Query: 726 ----LDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKR 781
DP +W S L +A+R L S+V E +ST S + L +
Sbjct: 1091 LEHSCDPLTYWNLKRSSWPGLSTLAVRFLGCPPSTVPSEKLFSTPMDAGSFGQPRLMMEH 1150
Query: 782 WNDLTYVHYNLRL 794
+ L ++ NL L
Sbjct: 1151 FEKLIFLKVNLPL 1163
>sp|O96006|ZBED1_HUMAN Zinc finger BED domain-containing protein 1 OS=Homo sapiens
GN=ZBED1 PE=1 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 78/422 (18%), Positives = 162/422 (38%), Gaps = 50/422 (11%)
Query: 275 RSRLDSVFLKSLKSQTSPYSGH----VKAKTGIEKKIRKEVISAICKFFYHAGIPSNAAN 330
R + F K LK ++S G VKA G + K ++E+ +A+ P++ +
Sbjct: 87 REAFATAFSK-LKPESSQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVD 145
Query: 331 SPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAE--VKASWSITGCSVMA 388
P F +L+ + PS + IS + + ++ ++E + + +A+W C +
Sbjct: 146 EPTFKVLLKTADPR---YELPSRKYISTKAIPEKYGAVREVILKELAEATW----CGIST 198
Query: 389 DCW-NDVQGRTLI----NFL-VSCPRGLYFISSMDATDSIED---AANIFKLLDKVVEEI 439
D W ++ Q R + +FL + P L S T + + A I ++L +V E
Sbjct: 199 DMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEW 258
Query: 440 G-EENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDK 498
G V T A +L+ PC + + + +G L +
Sbjct: 259 GISAKVFGATTNYGKDIVKACSLLDVAVH----MPCLGHTFNAGIQQAFQLPKLGALLSR 314
Query: 499 AKKLTRFIYNSTWLLNVM----KKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRL 554
+KL + S + ++ K++ L+ + + ++ LQ L +Q+ + +
Sbjct: 315 CRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGV 374
Query: 555 FQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISF 614
E ++L + W ++ + + L P QV + + ++ +IS
Sbjct: 375 LV-------------EDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTISM 421
Query: 615 LYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHV-----AAYFLNPSYRY 669
+ ++ I D+++ VI + + + + A FL+P Y+
Sbjct: 422 VKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYKR 481
Query: 670 RP 671
P
Sbjct: 482 LP 483
>sp|O75132|ZBED4_HUMAN Zinc finger BED domain-containing protein 4 OS=Homo sapiens GN=ZBED4
PE=1 SV=2
Length = 1171
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 72/375 (19%), Positives = 151/375 (40%), Gaps = 61/375 (16%)
Query: 459 GKMLEEKRRNLFWTPCAVDCIDRMLDDILN-----IKWVGECLDKAKKLTRFIYNSTWL- 512
GK L E + +V C ++ I++ + V L A+K+ ++ S
Sbjct: 814 GKTLNEGEHS------SVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAK 867
Query: 513 --LNVMKKEFTKGQE-LLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSD 569
L +++E+ Q L++ +K++TSF+ L+ L++Q+ + + +
Sbjct: 868 EKLAELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVECNF--------- 918
Query: 570 EGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKID---STESRSISFLYNDMYRAKLAI 626
+ +++ W+ MQ V ++L P +++ ST S+ I ++ + ++
Sbjct: 919 ------RELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPMVHILNRKVEMLF 972
Query: 627 KAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYR-----------YRPDFIM 675
+ G D + S+ ++ H P +V A L+P Y+ Y+ D I
Sbjct: 973 EETMGIDTMLRS-LKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEEEAEQYKQDLIR 1031
Query: 676 HPEIIRGLNECIV---RLEVDNGKRISASMQ-IPDFVS------ARADFGTDLAISTRSE 725
E++ +E + R + + + SA+ + + V+ R + ++ E
Sbjct: 1032 ELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLAYLEE 1091
Query: 726 ------LDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSR 779
DP +W S L +A+R L S V E ++T + S ++ L
Sbjct: 1092 EVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQSRLMM 1151
Query: 780 KRWNDLTYVHYNLRL 794
+ + L ++ NL L
Sbjct: 1152 EHFEKLIFLKVNLPL 1166
>sp|A6Q164|GLMM_NITSB Phosphoglucosamine mutase OS=Nitratiruptor sp. (strain SB155-2)
GN=glmM PE=3 SV=1
Length = 445
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 322 AGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSI 381
AGI +A+++PY+ N ++ G LQ + I F ++ TI+EN + +
Sbjct: 92 AGIMISASHNPYYDNGIKFFNHQGDKLQPEDEKAIEAIFFDEQ--TIEEN----QKTDQD 145
Query: 382 TGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAAN--IFKLLDKVVEEI 439
G S D DV GR +++ S P+ L +++ + D AN +K+ V E+
Sbjct: 146 IGSSKRID---DVIGRYIVHLKNSFPKDL----TLNGLRVVIDTANGAAYKVAPTVFSEL 198
Query: 440 GEENVV 445
G E V
Sbjct: 199 GAEVFV 204
>sp|O28275|MFNA_ARCFU L-tyrosine decarboxylase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=mfnA PE=3 SV=1
Length = 367
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 16 HGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCL-NMRKNLEG 74
H +A + + ++ N + G L+ L R+ G++ HCE +C N++G
Sbjct: 29 HPVAVEAHRMFIETNLGDPGIFRGTVELEAKLMRLIGDILHCETPAGYICSGGTEANIQG 88
Query: 75 CRSGRKRSQSEN 86
R+ R + EN
Sbjct: 89 IRAARNVQKKEN 100
>sp|C6DET4|SECA_PECCP Protein translocase subunit SecA OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=secA PE=3 SV=1
Length = 900
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 297 VKAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQG--------L 348
VK + + I E + AGI N N+ + ++V Q GQ +
Sbjct: 447 VKGQPILVGTISIEKSEVVSHALEKAGIKHNVLNAKFHAMEADIVAQAGQAGAVTIATNM 506
Query: 349 QGPSSRLISGRFLQDEIATIK----ENLAEVKASWSITGCSVMA 388
G + ++ G Q E+A ++ E +AE+KA+W + +V+A
Sbjct: 507 AGRGTDIVLGGSWQAEVALLENPNDEQIAEIKAAWKVRHDAVLA 550
>sp|B1JK72|SECA_YERPY Protein translocase subunit SecA OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|Q66EJ6|SECA_YERPS Protein translocase subunit SecA OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|A4TQ74|SECA_YERPP Protein translocase subunit SecA OS=Yersinia pestis (strain
Pestoides F) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|Q1CML8|SECA_YERPN Protein translocase subunit SecA OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|A9R0R9|SECA_YERPG Protein translocase subunit SecA OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|Q7CGB6|SECA_YERPE Protein translocase subunit SecA OS=Yersinia pestis GN=secA PE=3
SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|B2K4F5|SECA_YERPB Protein translocase subunit SecA OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|Q1C223|SECA_YERPA Protein translocase subunit SecA OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|A7FM57|SECA_YERP3 Protein translocase subunit SecA OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=secA PE=3 SV=1
Length = 904
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 271 PPVRRSRLDSVFL----------KSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFY 320
P +R+ D V++ + ++ +T+ + IEK EV+SA
Sbjct: 417 PMIRKDLADLVYMTEQEKIGAIIEDIRERTANGQPVLVGTISIEKS---EVVSA---ELT 470
Query: 321 HAGIPSNAANSPYFHNMLELVGQYGQ--------GLQGPSSRLISGRFLQDEIATIK--- 369
AGI N+ + E+V Q GQ + G + ++ G Q EIA ++
Sbjct: 471 KAGIEHKVLNAKFHAMEAEIVSQAGQPGAVTIATNMAGRGTDIVLGGSWQSEIAALEDPT 530
Query: 370 -ENLAEVKASWSITGCSVMA 388
E +A +KA+W I +V+A
Sbjct: 531 EEQIAAIKAAWQIRHDAVLA 550
>sp|A0RRK2|GLMM_CAMFF Phosphoglucosamine mutase OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=glmM PE=3 SV=1
Length = 446
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 322 AGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLA-EVKASWS 380
AGI +A+++P+ N ++ +G L + + I F +EI + + E+ S
Sbjct: 92 AGIMISASHNPFDDNGIKFFDSFGNKLSVEAEQAIENIFFHNEIIENNQKIGLEIGQSKR 151
Query: 381 ITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAAN--IFKLLDKVVEE 438
I +DV GR +++ S P+ L ++ + D AN ++K+ V E
Sbjct: 152 I----------DDVIGRYIVHIKNSFPKSL----TLKGLRVVLDVANGAVYKVAPTVFSE 197
Query: 439 IGEENVV 445
+G E +V
Sbjct: 198 LGAETIV 204
>sp|A7ZB08|GLMM_CAMC1 Phosphoglucosamine mutase OS=Campylobacter concisus (strain 13826)
GN=glmM PE=3 SV=1
Length = 446
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 322 AGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDE-IATIKENLAEVKASWS 380
AGI +A+++PY+ N ++ +G L I F DE IA ++ + E+ A+
Sbjct: 92 AGIMISASHNPYYDNGIKFFDSFGNKLDETIEAEIEKIFYDDELIANAQKTMTEIGANKR 151
Query: 381 ITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIG 440
I +DV GR ++ S P+ L + D AA +K+ V E+G
Sbjct: 152 I----------DDVIGRYIVQIKNSFPKELNLKNLRVVLDVANGAA--YKVAPTVFSELG 199
Query: 441 EENVV 445
+ +V
Sbjct: 200 ADVIV 204
>sp|Q2KI06|PHOP2_BOVIN Pyridoxal phosphate phosphatase PHOSPHO2 OS=Bos taurus GN=PHOSPHO2
PE=2 SV=1
Length = 241
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 422 IEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDR 481
I D+ ++F +D V+E +V + N A+F + G + EK T C
Sbjct: 97 ISDSNSVF--IDWVLEATNFHDVFDKVFTNPAAFDSNGHLTVEKHH----THSCTRCPQN 150
Query: 482 MLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRP 529
+ +++ +++VGE L + TR +Y +V F K ++ P
Sbjct: 151 LCKNVVLVEFVGEQLQQGVNYTRIVYIGDGGNDVCPVTFLKKNDIAMP 198
>sp|P41772|AMT1_CANGA Metal-activated transcriptional activator protein AMT1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=AMT1 PE=1 SV=1
Length = 265
Score = 33.5 bits (75), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 63 DVCLNMRKNLEGCRSGRKRSQSENEQASLSFHSSDYNDTEDALTGYKHRGKKVMSDKNLV 122
D+CL +R C + RKR+Q N++ +LS +S N AL+ + G V+++ +++
Sbjct: 88 DMCLCVRGEPCRCHARRKRTQKSNKKDNLSINSPTNNSPSPALS--VNIGGMVVANDDIL 145
Query: 123 IRFAPLRSLGYMDP 136
P++++ P
Sbjct: 146 KSLGPIQNVDLTAP 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,044,080
Number of Sequences: 539616
Number of extensions: 14528923
Number of successful extensions: 43269
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 43243
Number of HSP's gapped (non-prelim): 72
length of query: 897
length of database: 191,569,459
effective HSP length: 127
effective length of query: 770
effective length of database: 123,038,227
effective search space: 94739434790
effective search space used: 94739434790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)