BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044696
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 5/203 (2%)
Query: 14 GAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWL 73
G VD +S P + + E +DAPVSGG+IGAR+G L+I G+ V +
Sbjct: 89 GKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRV 148
Query: 74 TPLFEVLGKP-TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVK 132
PLF++LGK T +GG G GQ+CK+ANQI+V N+ +SE LVFA +AG D + R A+
Sbjct: 149 KPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALX 208
Query: 133 GGAAGSMAMELYGERMIEKDFRPGGFAEYXXXXXXXXXXXXXXXXXXXXXXLPGAALGKQ 192
GG A S +E++GER I + F PG + LP A ++
Sbjct: 209 GGFASSRILEVHGERXINRTFEPG----FKIALHQKDLNLALQSAKALALNLPNTATCQE 264
Query: 193 LFSAMVANGDGKFGTQGLVSVIE 215
LF+ ANG + V +E
Sbjct: 265 LFNTCAANGGSQLDHSAXVQALE 287
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
G+ +A PG++++D S P AR+ +D PVSGG +GA G L I A
Sbjct: 108 QGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIXAG 167
Query: 65 GDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124
G A + PL +V G+ T +G G GQ K+ANQ +VG + ++E L+FA + G D
Sbjct: 168 GKPADFERSLPLLKVFGRATHVGPHGSGQLTKLANQXIVGITIGAVAEALLFATKGGADX 227
Query: 125 RKWRDAVKGGAAGSMAMELYGERMIEKDFRP 155
K ++A+ GG A S ++L+G+R +E+DF P
Sbjct: 228 AKVKEAITGGFADSRVLQLHGQRXVERDFAP 258
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 4/217 (1%)
Query: 4 PDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFA 63
P G++SA G V VD +S P+ ++ KVA E+ VDAPVSGG GA G L I
Sbjct: 81 PGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMV 140
Query: 64 AGDSAVVQWLTPLFEVLGKPTF-MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122
AV + + P+ V+GK + +G G G + KI N +++G N+ L+E LV + GL
Sbjct: 141 GASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGL 200
Query: 123 DVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAEYXXXXXXXXXXXXXXXXXXXXX 182
++ + + S AME E+ I GGFA
Sbjct: 201 KPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFA---MDLQHKDLGLALEAGKEGNV 257
Query: 183 XLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERING 219
LP A+ Q+F A G G+ ++ V E++ G
Sbjct: 258 PLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTG 294
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Query: 1 ALDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLA 60
AL +GI+ PG V +D +S P +REI + + +DAPVSGG+ A DG L+
Sbjct: 79 ALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVSGGEPKAIDGTLS 138
Query: 61 IFAAGDSAVVQWLTPLFEVL-GKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE 119
+ GD A+ L + G G G G K+ANQ++V N+ SE L A +
Sbjct: 139 VXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNIAAXSEALTLATK 198
Query: 120 AGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPG 156
AG++ A++GG AGS ++ + +++F+PG
Sbjct: 199 AGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPG 235
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Query: 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAI 61
L P G++ + PG YVD ++ E+ +V R ++APVSG + DG L I
Sbjct: 105 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 164
Query: 62 FAAGDSAVVQWLTPLFEVLGKPT-FMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEA 120
AAGD + + + F+ +GK + F+G G + +V G+ + ++EGL A
Sbjct: 165 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 224
Query: 121 GLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAEY 161
G + D + G S+ ++ + +++ +F+P + +Y
Sbjct: 225 GQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKY 265
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAI 61
D G++ + G Y+D ++ + +I + + V+ PVSG A DG+L I
Sbjct: 96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLII 155
Query: 62 FAAGDSAVVQWLTPLFEVLGKPTF-MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEA 120
AAGD A+ + P F+VLGK +F +G G G K+ +++G+ + SEGLV AD++
Sbjct: 156 LAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS 215
Query: 121 GLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRP 155
GL D + GA + + G M + + P
Sbjct: 216 GLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPP 250
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 1/144 (0%)
Query: 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAI 61
LD DG+++ + PG + ++ ++ P AR+I ARER +DAPVSGG GA G L
Sbjct: 78 LDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVSGGTAGAAAGTLTF 137
Query: 62 FAAGDSAVVQWLTPLFEVLGKPTFMGGA-GCGQSCKIANQIVVGANLLGLSEGLVFADEA 120
GD+ ++ PLFE G+ F G G GQ K+ N ++ +G +E
Sbjct: 138 XVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLXIGTAEAXALGVAN 197
Query: 121 GLDVRKWRDAVKGGAAGSMAMELY 144
GL+ + + + + G+ A+E+Y
Sbjct: 198 GLEAKVLAEIXRRSSGGNWALEVY 221
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 1/144 (0%)
Query: 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAI 61
LD DG+++ + PG + ++ ++ P AR+I ARER +DAPVSGG GA G L
Sbjct: 77 LDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVSGGTAGAAAGTLTF 136
Query: 62 FAAGDSAVVQWLTPLFEVLGKPTFMGGA-GCGQSCKIANQIVVGANLLGLSEGLVFADEA 120
GD+ ++ PLFE G+ F G G GQ K+ N ++ +G +E
Sbjct: 137 XVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLXIGTAEAXALGVAN 196
Query: 121 GLDVRKWRDAVKGGAAGSMAMELY 144
GL+ + + + + G+ A+E+Y
Sbjct: 197 GLEAKVLAEIXRRSSGGNWALEVY 220
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
+ + L G +VD TS P +R + + RE+ +DAPVSGG GA G L +
Sbjct: 74 EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLG 133
Query: 65 GDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124
G V+ + P K +G G G + K N ++ NL EGL+ + G+
Sbjct: 134 GPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSA 193
Query: 125 RKWRDAVKGGAAGSMAME-LYGERMIEKDFRPGGFA 159
K + + + S A E L +R++ + F P FA
Sbjct: 194 EKALEVINASSGRSNATENLIPQRVLTRAF-PKTFA 228
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
+ + L G +VD TS P +R + + RE+ +DAPVSGG GA G L +
Sbjct: 74 EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVXLG 133
Query: 65 GDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124
G V+ + P K +G G G + K N ++ NL EGL+ + G+
Sbjct: 134 GPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSA 193
Query: 125 RKWRDAVKGGAAGSMAME-LYGERMIEKDFRPGGFA 159
K + + + S A E L +R++ + F P FA
Sbjct: 194 EKALEVINASSGRSNATENLIPQRVLTRAF-PKTFA 228
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Query: 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAG 65
G++ + G YVD ++ PA ++ I + ++APVSG A DG L I AAG
Sbjct: 80 GVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAG 139
Query: 66 DSAVVQWLTPLFEVLGKPTF-MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124
D + P FE +GK +G G G K+ +V+G + EGL ++AGL
Sbjct: 140 DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLAT 199
Query: 125 RKWRDAVKGGAAGSMAMELYGERMIEKDFRP 155
D + GA + L G + +++F P
Sbjct: 200 DAILDVIGAGAMANPMFALKGGLIRDRNFAP 230
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
+GI+ + G++ +D+++ PA+++E+ K + +DAPVSGG AR G L
Sbjct: 78 NGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVG 137
Query: 65 GDSAVVQWLTPLFEVLGKP-TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123
G L +G + G G GQ+ KI N +++ +++G +E + GLD
Sbjct: 138 GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLD 197
Query: 124 VR 125
+
Sbjct: 198 PK 199
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
+GI+ + G++ +D+++ PA+++E+ K + +DAPVSGG AR G L
Sbjct: 100 NGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVG 159
Query: 65 GDSAVVQWLTPLFEVLGKP-TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123
G L +G + G G GQ+ KI N +++ +++G +E + GLD
Sbjct: 160 GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLD 219
Query: 124 VR 125
+
Sbjct: 220 PK 221
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
+G++ + G Y+D ++ + I R ++APVSG A DG L I AA
Sbjct: 79 NGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAA 138
Query: 65 GDSAVVQWLTPLFEVLGKPTF-MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123
GD ++ P F LGK +G G G K+ +++G + L EG+ GLD
Sbjct: 139 GDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLD 198
Query: 124 VRKWRDAVKGGAAGSMAMELYGERMIEKDF 153
+ + + GA + + G+ ++ +F
Sbjct: 199 GGQLLEVLDAGAMANPMFKGKGQMLLSGEF 228
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA 64
DG+ PG+ +++ A A+EI + +DAPVSGG + A G+ + A+
Sbjct: 86 DGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXAS 145
Query: 65 GDSAVVQWLTPLFEVLGKPTFM--GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122
G A L P+ + + + G G + KI +Q++ G ++ +E A AG+
Sbjct: 146 GSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGI 205
Query: 123 DVRKWRDAVKGGAAGSMAMELYGERMIEKDFRP 155
+ D V A S E + +++ D+ P
Sbjct: 206 PLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTP 238
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQ 71
PG V ++ A E+ + + RD VDAPVSGG A G+LA D V +
Sbjct: 96 KPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYE 155
Query: 72 WLTPLFEVLGKPTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVR----- 125
+ P F+ G G G K+A ++ + E + A+ AGLD++
Sbjct: 156 RIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRV 215
Query: 126 -KWRDAVKGGAAGSMAMELYGERMIEKDFRPGGF 158
+ DA+ GG M R KD P F
Sbjct: 216 VRHTDALTGGPGAIMV------RDNMKDLEPDNF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,441,730
Number of Sequences: 62578
Number of extensions: 244205
Number of successful extensions: 633
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 19
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)