Query 044696
Match_columns 220
No_of_seqs 219 out of 1227
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.7E-57 3.8E-62 385.9 24.3 211 1-215 75-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 9.4E-54 2E-58 358.6 23.7 216 1-220 109-326 (327)
3 PRK15059 tartronate semialdehy 100.0 2.6E-51 5.5E-56 353.0 26.8 215 1-219 73-288 (292)
4 PRK15461 NADH-dependent gamma- 100.0 1.3E-48 2.8E-53 336.9 26.2 215 2-220 76-292 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 6.7E-47 1.5E-51 325.0 25.3 209 2-214 71-287 (288)
6 PLN02858 fructose-bisphosphate 100.0 5.1E-46 1.1E-50 370.4 26.1 216 1-220 78-297 (1378)
7 PLN02858 fructose-bisphosphate 100.0 5.4E-44 1.2E-48 356.0 25.4 216 1-220 398-617 (1378)
8 PRK11559 garR tartronate semia 100.0 3.9E-43 8.4E-48 302.4 26.5 215 2-220 77-292 (296)
9 TIGR01505 tartro_sem_red 2-hyd 100.0 5.2E-43 1.1E-47 301.1 26.7 215 2-220 74-289 (291)
10 PRK12490 6-phosphogluconate de 100.0 2E-39 4.2E-44 280.1 20.0 203 6-215 79-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 2.8E-38 6E-43 287.3 21.8 189 5-198 91-298 (493)
12 PRK09599 6-phosphogluconate de 100.0 2.9E-36 6.3E-41 260.6 20.6 201 6-214 79-292 (301)
13 PRK09287 6-phosphogluconate de 100.0 1.6E-32 3.4E-37 248.3 20.1 181 5-190 73-272 (459)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 9.5E-31 2.1E-35 225.9 21.0 206 6-219 78-291 (298)
15 TIGR00873 gnd 6-phosphoglucona 100.0 9.6E-30 2.1E-34 230.9 18.7 180 6-190 83-279 (467)
16 PTZ00142 6-phosphogluconate de 100.0 4E-29 8.8E-34 226.9 20.2 181 5-190 85-283 (470)
17 PF14833 NAD_binding_11: NAD-b 100.0 9.1E-29 2E-33 187.0 14.2 121 90-214 1-122 (122)
18 TIGR03026 NDP-sugDHase nucleot 99.9 3.4E-25 7.4E-30 199.1 15.6 178 5-197 104-296 (411)
19 COG1023 Gnd Predicted 6-phosph 99.9 4.7E-22 1E-26 162.8 16.3 199 7-218 80-291 (300)
20 PF03446 NAD_binding_2: NAD bi 99.9 2.9E-22 6.3E-27 158.6 6.4 86 2-88 76-163 (163)
21 PRK14618 NAD(P)H-dependent gly 99.8 8.5E-21 1.8E-25 165.8 8.0 198 7-215 90-321 (328)
22 PRK11064 wecC UDP-N-acetyl-D-m 99.8 1.6E-19 3.5E-24 162.5 16.3 172 5-196 103-294 (415)
23 PRK15182 Vi polysaccharide bio 99.8 3.3E-19 7.2E-24 160.7 14.4 177 3-196 102-292 (425)
24 PRK06129 3-hydroxyacyl-CoA deh 99.8 2.1E-17 4.6E-22 143.4 15.5 185 10-212 106-294 (308)
25 PRK15057 UDP-glucose 6-dehydro 99.8 2.3E-17 4.9E-22 147.3 15.6 169 6-197 103-283 (388)
26 PRK00094 gpsA NAD(P)H-dependen 99.8 4.6E-18 9.9E-23 147.8 10.7 198 6-215 90-323 (325)
27 COG0362 Gnd 6-phosphogluconate 99.8 1.5E-17 3.2E-22 144.9 13.3 180 6-190 87-284 (473)
28 PRK14619 NAD(P)H-dependent gly 99.7 7.1E-18 1.5E-22 146.3 8.5 185 11-214 72-298 (308)
29 PRK12557 H(2)-dependent methyl 99.6 5E-15 1.1E-19 130.1 15.1 123 6-133 101-238 (342)
30 KOG2653 6-phosphogluconate deh 99.6 1.2E-14 2.6E-19 125.3 13.0 179 6-190 90-287 (487)
31 PRK08229 2-dehydropantoate 2-r 99.5 1.5E-13 3.3E-18 120.4 13.0 185 7-204 93-323 (341)
32 PRK07679 pyrroline-5-carboxyla 99.3 1.7E-11 3.8E-16 104.9 10.3 165 6-201 84-269 (279)
33 PRK07531 bifunctional 3-hydrox 99.2 1.4E-10 3E-15 107.0 13.7 115 12-139 106-225 (495)
34 PRK08268 3-hydroxy-acyl-CoA de 99.1 5.8E-10 1.3E-14 103.0 11.7 106 9-135 110-226 (507)
35 PLN02353 probable UDP-glucose 99.1 7.4E-09 1.6E-13 94.8 17.5 174 7-193 113-302 (473)
36 PRK08507 prephenate dehydrogen 99.0 4.4E-08 9.5E-13 83.7 18.5 119 7-134 78-209 (275)
37 PRK11199 tyrA bifunctional cho 98.9 3.6E-08 7.9E-13 87.9 15.6 115 7-129 162-279 (374)
38 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.9 4.5E-09 9.7E-14 97.0 10.0 108 10-135 109-224 (503)
39 PLN02688 pyrroline-5-carboxyla 98.9 1.3E-08 2.8E-13 86.3 11.6 170 6-201 80-264 (266)
40 PRK08269 3-hydroxybutyryl-CoA 98.9 3.6E-09 7.8E-14 92.2 7.9 108 7-136 101-220 (314)
41 COG1004 Ugd Predicted UDP-gluc 98.9 1.1E-07 2.4E-12 84.0 15.6 176 7-196 106-293 (414)
42 COG0677 WecC UDP-N-acetyl-D-ma 98.8 9.5E-08 2.1E-12 84.3 12.1 130 6-135 113-254 (436)
43 PRK09260 3-hydroxybutyryl-CoA 98.7 7.1E-08 1.5E-12 82.9 10.3 111 7-134 103-220 (288)
44 PRK08655 prephenate dehydrogen 98.7 1.1E-06 2.4E-11 80.0 17.9 120 6-130 77-201 (437)
45 PRK07417 arogenate dehydrogena 98.6 2.2E-06 4.7E-11 73.5 14.0 99 6-108 76-187 (279)
46 PRK06130 3-hydroxybutyryl-CoA 98.4 1.4E-06 2.9E-11 75.7 9.2 107 12-136 105-221 (311)
47 PF00984 UDPG_MGDP_dh: UDP-glu 98.3 1E-05 2.2E-10 58.5 10.5 90 91-195 3-94 (96)
48 PLN02545 3-hydroxybutyryl-CoA 98.3 6.6E-06 1.4E-10 70.9 9.9 111 7-134 105-222 (295)
49 PRK07530 3-hydroxybutyryl-CoA 98.0 2.8E-05 6.1E-10 66.9 9.0 110 6-133 104-221 (292)
50 TIGR00873 gnd 6-phosphoglucona 98.0 0.00016 3.4E-09 66.5 14.1 145 67-219 278-446 (467)
51 PRK06476 pyrroline-5-carboxyla 98.0 0.00026 5.5E-09 59.8 14.2 109 11-134 83-196 (258)
52 PRK06035 3-hydroxyacyl-CoA deh 97.9 3.2E-05 6.8E-10 66.6 6.8 110 9-134 109-224 (291)
53 PRK07502 cyclohexadienyl dehyd 97.8 0.0011 2.4E-08 57.5 15.7 91 7-98 86-189 (307)
54 PRK09287 6-phosphogluconate de 97.8 0.00035 7.6E-09 64.0 12.7 145 67-219 271-438 (459)
55 PF00393 6PGD: 6-phosphoglucon 97.8 0.00014 3E-09 62.5 9.4 95 92-190 1-105 (291)
56 PRK07819 3-hydroxybutyryl-CoA 97.7 0.00028 6.1E-09 60.7 9.2 108 12-134 112-225 (286)
57 PTZ00142 6-phosphogluconate de 97.6 0.0022 4.8E-08 59.0 15.0 144 68-219 283-452 (470)
58 PRK06545 prephenate dehydrogen 97.6 0.0021 4.5E-08 57.1 13.9 115 11-133 85-212 (359)
59 KOG2666 UDP-glucose/GDP-mannos 97.5 0.012 2.6E-07 51.2 17.0 172 8-200 114-302 (481)
60 PRK07680 late competence prote 97.5 0.0054 1.2E-07 52.2 14.4 120 7-134 82-205 (273)
61 TIGR01724 hmd_rel H2-forming N 97.2 0.031 6.7E-07 48.9 15.9 115 5-124 100-230 (341)
62 PRK11880 pyrroline-5-carboxyla 97.2 0.026 5.7E-07 47.6 15.2 170 14-201 87-265 (267)
63 PRK12921 2-dehydropantoate 2-r 96.7 0.093 2E-06 45.0 14.7 174 9-197 90-300 (305)
64 PRK05808 3-hydroxybutyryl-CoA 96.5 0.022 4.8E-07 48.7 9.5 111 7-134 104-221 (282)
65 PF02153 PDH: Prephenate dehyd 96.1 0.56 1.2E-05 39.6 15.7 81 7-88 65-158 (258)
66 PLN02712 arogenate dehydrogena 96.0 0.092 2E-06 50.5 11.4 77 10-88 449-537 (667)
67 PRK08293 3-hydroxybutyryl-CoA 95.4 0.15 3.3E-06 43.6 9.9 112 7-135 106-225 (287)
68 PLN02350 phosphogluconate dehy 95.3 0.47 1E-05 44.1 13.1 120 92-219 327-461 (493)
69 PF00393 6PGD: 6-phosphoglucon 95.3 0.35 7.5E-06 41.8 11.4 122 88-217 135-271 (291)
70 PF10728 DUF2520: Domain of un 95.2 0.52 1.1E-05 35.9 10.9 107 60-176 3-113 (132)
71 PRK14806 bifunctional cyclohex 95.0 0.12 2.7E-06 50.0 8.7 83 7-89 83-178 (735)
72 PRK14620 NAD(P)H-dependent gly 94.8 1.7 3.7E-05 37.8 14.8 130 73-213 160-323 (326)
73 COG0287 TyrA Prephenate dehydr 94.7 2.6 5.6E-05 36.3 15.4 80 8-88 85-171 (279)
74 PRK12439 NAD(P)H-dependent gly 94.0 1.3 2.7E-05 39.1 12.1 148 56-214 149-327 (341)
75 PTZ00431 pyrroline carboxylate 93.9 3.4 7.4E-05 34.8 14.6 173 8-200 78-259 (260)
76 PRK06522 2-dehydropantoate 2-r 92.1 2.6 5.6E-05 35.9 11.0 115 70-198 155-298 (304)
77 PF09130 DUF1932: Domain of un 91.7 0.41 8.9E-06 32.5 4.5 69 117-197 1-71 (73)
78 cd01065 NAD_bind_Shikimate_DH 91.5 0.16 3.5E-06 38.8 2.7 34 10-45 105-138 (155)
79 PRK06249 2-dehydropantoate 2-r 91.3 9 0.00019 33.1 13.9 115 68-197 165-308 (313)
80 PF03721 UDPG_MGDP_dh_N: UDP-g 91.2 0.49 1.1E-05 38.1 5.2 70 6-75 105-184 (185)
81 COG0345 ProC Pyrroline-5-carbo 90.3 5.3 0.00011 34.2 10.9 139 48-201 117-264 (266)
82 TIGR01244 conserved hypothetic 89.3 1.6 3.4E-05 33.2 6.4 60 14-87 28-94 (135)
83 PRK07634 pyrroline-5-carboxyla 88.4 13 0.00028 30.6 12.3 81 51-134 125-209 (245)
84 PRK11861 bifunctional prephena 88.3 26 0.00055 33.9 17.7 83 7-89 17-112 (673)
85 PRK08818 prephenate dehydrogen 87.8 20 0.00043 32.1 17.0 76 10-89 77-156 (370)
86 COG0362 Gnd 6-phosphogluconate 87.3 23 0.0005 32.2 14.1 108 89-200 313-435 (473)
87 PRK07066 3-hydroxybutyryl-CoA 86.5 22 0.00047 31.2 15.7 116 7-137 105-226 (321)
88 TIGR00745 apbA_panE 2-dehydrop 85.7 20 0.00044 30.1 12.9 113 70-196 148-289 (293)
89 TIGR00112 proC pyrroline-5-car 85.5 20 0.00043 29.9 14.1 117 12-135 68-188 (245)
90 TIGR03376 glycerol3P_DH glycer 84.5 16 0.00035 32.3 10.9 136 59-212 160-340 (342)
91 PLN02256 arogenate dehydrogena 83.7 5.1 0.00011 34.8 7.4 78 9-88 115-204 (304)
92 TIGR00507 aroE shikimate 5-deh 83.6 0.92 2E-05 38.5 2.6 35 9-45 202-236 (270)
93 PRK12491 pyrroline-5-carboxyla 83.5 27 0.00058 29.7 13.6 138 48-200 120-266 (272)
94 COG1893 ApbA Ketopantoate redu 81.3 22 0.00048 30.9 10.4 127 60-200 147-302 (307)
95 PF04273 DUF442: Putative phos 79.0 12 0.00026 27.5 6.9 62 15-89 29-96 (110)
96 COG0240 GpsA Glycerol-3-phosph 77.1 50 0.0011 29.1 11.2 192 9-214 93-321 (329)
97 PF08546 ApbA_C: Ketopantoate 76.9 21 0.00045 26.1 7.9 80 104-196 38-123 (125)
98 PRK05479 ketol-acid reductoiso 74.7 47 0.001 29.3 10.5 69 54-127 143-224 (330)
99 PRK06928 pyrroline-5-carboxyla 74.3 53 0.0012 27.8 12.0 84 48-135 120-209 (277)
100 PLN02712 arogenate dehydrogena 70.4 17 0.00036 35.3 7.3 79 9-88 131-220 (667)
101 COG4007 Predicted dehydrogenas 69.5 74 0.0016 27.4 13.2 116 6-126 102-233 (340)
102 PTZ00345 glycerol-3-phosphate 69.3 85 0.0018 28.1 11.7 144 58-214 172-353 (365)
103 cd03315 MLE_like Muconate lact 67.2 57 0.0012 27.3 9.2 67 14-80 130-202 (265)
104 cd03319 L-Ala-DL-Glu_epimerase 66.3 72 0.0016 27.5 9.9 95 15-124 179-282 (316)
105 cd03321 mandelate_racemase Man 65.7 84 0.0018 27.7 10.3 36 15-50 188-224 (355)
106 PRK03739 2-isopropylmalate syn 63.9 1.2E+02 0.0026 28.8 11.4 100 22-121 48-162 (552)
107 PRK05708 2-dehydropantoate 2-r 59.7 1E+02 0.0022 26.5 9.6 125 61-199 147-298 (305)
108 cd01483 E1_enzyme_family Super 58.9 26 0.00057 26.3 5.2 40 10-50 86-125 (143)
109 PRK00915 2-isopropylmalate syn 58.3 1.3E+02 0.0028 28.2 10.6 102 22-123 22-135 (513)
110 TIGR00973 leuA_bact 2-isopropy 57.1 93 0.002 29.0 9.4 102 22-123 19-132 (494)
111 COG2716 GcvR Glycine cleavage 55.6 27 0.00059 27.8 4.7 60 20-82 11-70 (176)
112 cd03325 D-galactonate_dehydrat 55.2 52 0.0011 29.0 7.1 40 10-49 172-213 (352)
113 PF01113 DapB_N: Dihydrodipico 51.8 23 0.00049 26.3 3.7 32 11-44 65-96 (124)
114 TIGR01915 npdG NADPH-dependent 51.3 59 0.0013 26.4 6.4 81 13-96 93-197 (219)
115 PRK06436 glycerate dehydrogena 50.7 17 0.00038 31.5 3.3 40 6-45 194-235 (303)
116 cd03329 MR_like_4 Mandelate ra 50.6 1.4E+02 0.0031 26.4 9.2 65 15-79 191-262 (368)
117 PRK06141 ornithine cyclodeamin 49.5 8.2 0.00018 33.6 1.1 35 10-45 208-242 (314)
118 PF03435 Saccharop_dh: Sacchar 49.4 15 0.00032 32.6 2.8 38 5-44 59-96 (386)
119 TIGR01470 cysG_Nterm siroheme 49.1 65 0.0014 26.2 6.3 52 13-64 68-124 (205)
120 TIGR02534 mucon_cyclo muconate 49.0 1E+02 0.0022 27.2 8.0 67 15-81 189-261 (368)
121 TIGR00640 acid_CoA_mut_C methy 49.0 1.1E+02 0.0025 23.0 7.9 40 58-99 84-125 (132)
122 cd03322 rpsA The starvation se 48.7 1.9E+02 0.0041 25.5 9.8 70 9-79 158-235 (361)
123 PRK07714 hypothetical protein; 47.3 29 0.00063 24.8 3.5 44 2-45 21-66 (100)
124 PRK13602 putative ribosomal pr 47.3 31 0.00068 23.8 3.5 45 2-46 14-60 (82)
125 PF11115 DUF2623: Protein of u 47.2 51 0.0011 23.4 4.5 28 107-134 51-78 (95)
126 PRK08605 D-lactate dehydrogena 46.9 19 0.00042 31.5 3.0 40 6-45 221-262 (332)
127 PRK14847 hypothetical protein; 46.7 2.1E+02 0.0045 25.4 9.9 101 22-122 50-165 (333)
128 PRK09389 (R)-citramalate synth 46.7 2.5E+02 0.0054 26.2 10.9 98 22-122 20-128 (488)
129 PF03162 Y_phosphatase2: Tyros 45.4 1.2E+02 0.0026 23.8 7.0 110 14-133 33-148 (164)
130 PF00356 LacI: Bacterial regul 43.7 45 0.00097 20.4 3.5 31 115-145 4-34 (46)
131 PRK05583 ribosomal protein L7A 43.3 36 0.00078 24.7 3.5 44 2-45 20-65 (104)
132 cd03316 MR_like Mandelate race 43.1 1.9E+02 0.0042 25.2 8.8 64 15-78 191-260 (357)
133 PRK14017 galactonate dehydrata 42.9 1.2E+02 0.0025 27.1 7.5 64 15-79 179-249 (382)
134 cd00959 DeoC 2-deoxyribose-5-p 41.7 1.4E+02 0.0031 24.0 7.2 35 15-50 120-154 (203)
135 PF00682 HMGL-like: HMGL-like 41.5 1.9E+02 0.0042 23.5 10.1 102 23-124 11-124 (237)
136 PF07131 DUF1382: Protein of u 41.4 22 0.00048 23.1 1.8 24 26-49 10-33 (61)
137 PRK10265 chaperone-modulator p 41.1 1.3E+02 0.0029 21.5 7.2 70 115-199 12-82 (101)
138 PRK07283 hypothetical protein; 41.0 47 0.001 23.7 3.8 45 2-46 21-67 (98)
139 TIGR00736 nifR3_rel_arch TIM-b 40.6 1.5E+02 0.0033 24.7 7.3 42 13-55 67-108 (231)
140 PRK13601 putative L7Ae-like ri 40.4 46 0.001 23.0 3.5 45 2-46 11-57 (82)
141 PRK06683 hypothetical protein; 39.0 56 0.0012 22.5 3.8 45 2-46 14-60 (82)
142 PF07479 NAD_Gly3P_dh_C: NAD-d 38.5 1.5E+02 0.0032 22.9 6.5 96 95-195 26-137 (149)
143 TIGR02440 FadJ fatty oxidation 38.4 3.2E+02 0.007 26.7 10.1 57 66-132 462-520 (699)
144 PF01380 SIS: SIS domain SIS d 38.3 1.5E+02 0.0032 21.2 6.5 63 7-69 47-110 (131)
145 PRK10992 iron-sulfur cluster r 38.3 85 0.0018 25.9 5.4 19 116-134 40-58 (220)
146 COG4408 Uncharacterized protei 38.2 3E+02 0.0065 24.7 12.8 171 13-200 169-397 (431)
147 PF11113 Phage_head_chap: Head 37.9 38 0.00083 21.8 2.5 26 12-37 25-50 (56)
148 COG3870 Uncharacterized protei 37.7 1.1E+02 0.0024 22.2 5.1 55 26-82 11-65 (109)
149 PLN02700 homoserine dehydrogen 37.7 1.9E+02 0.004 26.1 7.8 106 13-124 109-225 (377)
150 PRK03501 ppnK inorganic polyph 37.7 87 0.0019 26.7 5.5 46 23-76 14-59 (264)
151 TIGR00977 LeuA_rel 2-isopropyl 36.7 3.2E+02 0.007 25.7 9.5 102 22-123 19-137 (526)
152 cd03318 MLE Muconate Lactonizi 36.4 1.8E+02 0.004 25.5 7.6 64 15-79 190-260 (365)
153 cd01392 HTH_LacI Helix-turn-he 35.7 59 0.0013 19.5 3.2 25 115-139 2-26 (52)
154 PRK06852 aldolase; Validated 35.4 1.5E+02 0.0033 25.8 6.7 109 12-132 176-301 (304)
155 cd02072 Glm_B12_BD B12 binding 35.0 2E+02 0.0043 21.7 6.9 31 58-88 81-117 (128)
156 cd04733 OYE_like_2_FMN Old yel 34.3 1.8E+02 0.0039 25.4 7.1 36 9-44 211-254 (338)
157 cd01075 NAD_bind_Leu_Phe_Val_D 34.1 62 0.0013 26.1 3.9 84 13-131 107-193 (200)
158 smart00859 Semialdhyde_dh Semi 34.0 25 0.00055 25.5 1.5 18 7-24 85-102 (122)
159 PRK11544 hycI hydrogenase 3 ma 33.8 48 0.001 25.7 3.1 45 13-62 32-76 (156)
160 PRK15072 bifunctional D-altron 33.5 2.2E+02 0.0048 25.6 7.8 64 15-79 208-278 (404)
161 cd03327 MR_like_2 Mandelate ra 33.3 2.2E+02 0.0048 24.9 7.6 64 15-79 173-243 (341)
162 PF14528 LAGLIDADG_3: LAGLIDAD 33.2 16 0.00035 24.3 0.3 58 4-68 10-68 (77)
163 PF06153 DUF970: Protein of un 32.9 87 0.0019 23.0 4.1 57 24-82 9-65 (109)
164 cd03420 SirA_RHOD_Pry_redox Si 32.9 97 0.0021 20.3 4.1 37 8-45 20-56 (69)
165 PRK05096 guanosine 5'-monophos 32.8 2.5E+02 0.0054 25.0 7.6 106 14-123 97-215 (346)
166 PRK13243 glyoxylate reductase; 32.6 36 0.00079 29.9 2.5 40 6-45 225-266 (333)
167 PRK11730 fadB multifunctional 32.6 4.6E+02 0.01 25.7 10.2 59 66-134 470-530 (715)
168 PF01680 SOR_SNZ: SOR/SNZ fami 32.5 2.7E+02 0.0059 22.6 9.1 101 32-133 86-198 (208)
169 cd06063 H2MP_Cyano-H2up This g 32.2 47 0.001 25.3 2.8 38 12-52 30-67 (146)
170 cd04885 ACT_ThrD-I Tandem C-te 32.1 66 0.0014 20.8 3.2 33 12-44 36-68 (68)
171 COG3453 Uncharacterized protei 32.0 2.2E+02 0.0049 21.5 7.4 81 28-124 47-129 (130)
172 PRK04761 ppnK inorganic polyph 31.7 1.4E+02 0.0031 25.1 5.8 47 21-78 1-47 (246)
173 PLN02727 NAD kinase 31.5 2.1E+02 0.0045 29.1 7.5 69 12-92 279-355 (986)
174 PRK08374 homoserine dehydrogen 31.0 1.6E+02 0.0035 25.9 6.3 105 12-123 90-206 (336)
175 COG2085 Predicted dinucleotide 30.3 70 0.0015 26.4 3.6 40 57-96 147-188 (211)
176 COG1102 Cmk Cytidylate kinase 30.3 79 0.0017 25.3 3.7 56 87-142 7-64 (179)
177 PRK08223 hypothetical protein; 30.0 1.9E+02 0.0041 25.0 6.4 50 9-63 113-163 (287)
178 PF00899 ThiF: ThiF family; I 29.9 99 0.0021 22.8 4.2 37 13-50 92-128 (135)
179 PRK00961 H(2)-dependent methyl 29.5 3.9E+02 0.0084 23.4 12.2 103 6-114 161-268 (342)
180 PRK04885 ppnK inorganic polyph 29.3 1.2E+02 0.0026 25.8 5.0 45 24-78 13-57 (265)
181 KOG2653 6-phosphogluconate deh 29.2 4.4E+02 0.0096 24.0 10.9 104 93-200 322-440 (487)
182 PRK11154 fadJ multifunctional 29.1 5.5E+02 0.012 25.1 10.8 57 66-132 467-525 (708)
183 PF13591 MerR_2: MerR HTH fami 29.0 1.5E+02 0.0034 20.2 4.7 69 115-198 5-73 (84)
184 PF13740 ACT_6: ACT domain; PD 29.0 84 0.0018 20.9 3.3 57 20-81 8-66 (76)
185 cd03328 MR_like_3 Mandelate ra 28.9 1.2E+02 0.0025 26.8 5.1 70 9-79 177-256 (352)
186 cd07942 DRE_TIM_LeuA Mycobacte 28.9 3.8E+02 0.0081 23.0 11.1 100 22-122 19-134 (284)
187 PF08671 SinI: Anti-repressor 28.7 1E+02 0.0022 17.1 3.0 21 112-132 7-27 (30)
188 PRK00048 dihydrodipicolinate r 28.7 1.4E+02 0.0031 25.0 5.4 33 13-47 60-92 (257)
189 cd03326 MR_like_1 Mandelate ra 28.6 2.4E+02 0.0052 25.3 7.1 68 10-78 201-276 (385)
190 PRK00299 sulfur transfer prote 28.6 1.4E+02 0.003 20.4 4.4 38 8-46 30-67 (81)
191 PF10100 DUF2338: Uncharacteri 28.6 4.7E+02 0.01 24.0 12.1 177 7-200 161-395 (429)
192 PRK07574 formate dehydrogenase 28.5 74 0.0016 28.7 3.8 41 5-45 268-310 (385)
193 PRK09620 hypothetical protein; 28.1 1.7E+02 0.0037 24.2 5.6 76 10-87 16-95 (229)
194 TIGR02441 fa_ox_alpha_mit fatt 28.1 5.9E+02 0.013 25.1 10.1 57 66-132 492-550 (737)
195 PRK02714 O-succinylbenzoate sy 28.1 2.7E+02 0.0059 24.1 7.2 36 15-50 165-204 (320)
196 COG1799 Uncharacterized protei 27.5 55 0.0012 26.0 2.4 30 7-36 90-120 (167)
197 COG1647 Esterase/lipase [Gener 27.4 2.1E+02 0.0046 24.0 5.9 83 15-103 18-108 (243)
198 PRK13302 putative L-aspartate 27.2 57 0.0012 27.7 2.7 33 10-42 87-119 (271)
199 PHA01083 hypothetical protein 27.2 82 0.0018 24.5 3.2 61 110-170 46-107 (149)
200 COG3199 Predicted inorganic po 27.0 2.1E+02 0.0046 25.5 6.1 58 12-90 70-132 (355)
201 cd03422 YedF YedF is a bacteri 26.3 1.7E+02 0.0037 19.1 4.4 38 8-46 20-57 (69)
202 PF12637 TSCPD: TSCPD domain; 26.3 1.4E+02 0.003 21.1 4.2 32 104-135 37-68 (95)
203 PRK08227 autoinducer 2 aldolas 26.1 2E+02 0.0042 24.6 5.7 103 24-133 156-261 (264)
204 TIGR01723 hmd_TIGR 5,10-methen 26.1 4.5E+02 0.0098 23.0 12.4 106 6-114 159-266 (340)
205 COG0075 Serine-pyruvate aminot 26.0 82 0.0018 28.5 3.6 54 16-69 138-194 (383)
206 COG1648 CysG Siroheme synthase 25.9 2.1E+02 0.0045 23.4 5.7 52 13-64 71-127 (210)
207 PF12123 Amidase02_C: N-acetyl 25.7 1.6E+02 0.0034 18.1 3.7 31 12-42 13-43 (45)
208 PLN03139 formate dehydrogenase 25.7 81 0.0017 28.5 3.5 40 6-45 276-317 (386)
209 cd02932 OYE_YqiM_FMN Old yello 25.6 3.3E+02 0.0071 23.7 7.3 36 10-45 217-260 (336)
210 cd04728 ThiG Thiazole synthase 25.6 3.2E+02 0.0069 23.2 6.7 74 12-100 121-195 (248)
211 cd00958 DhnA Class I fructose- 25.6 3.7E+02 0.008 21.8 7.4 37 15-51 124-168 (235)
212 PRK11589 gcvR glycine cleavage 25.3 3.4E+02 0.0073 21.9 6.7 110 16-130 10-129 (190)
213 COG2247 LytB Putative cell wal 25.3 1.4E+02 0.003 26.4 4.6 49 54-102 73-122 (337)
214 PRK05105 O-succinylbenzoate sy 24.7 1.4E+02 0.0031 25.9 4.8 39 10-48 154-196 (322)
215 COG3636 Predicted transcriptio 24.5 1.3E+02 0.0029 21.6 3.7 34 109-144 48-81 (100)
216 COG4639 Predicted kinase [Gene 24.2 1.1E+02 0.0025 24.2 3.6 37 11-47 66-107 (168)
217 PLN02746 hydroxymethylglutaryl 24.1 5.1E+02 0.011 23.0 10.7 113 8-124 40-178 (347)
218 PRK00257 erythronate-4-phospha 23.9 99 0.0022 27.8 3.7 40 6-45 192-233 (381)
219 PF01188 MR_MLE: Mandelate rac 23.7 1.6E+02 0.0035 18.9 3.9 34 14-49 13-47 (67)
220 PRK13304 L-aspartate dehydroge 23.6 85 0.0019 26.5 3.1 35 11-45 82-120 (265)
221 COG5495 Uncharacterized conser 23.6 4.6E+02 0.01 22.3 11.2 112 11-126 89-207 (289)
222 PLN02321 2-isopropylmalate syn 23.5 6.9E+02 0.015 24.3 10.7 101 22-123 104-225 (632)
223 PRK01018 50S ribosomal protein 23.4 1.2E+02 0.0027 21.5 3.5 44 2-45 19-64 (99)
224 TIGR02437 FadB fatty oxidation 23.2 7.2E+02 0.016 24.4 9.8 59 66-134 470-530 (714)
225 cd07940 DRE_TIM_IPMS 2-isoprop 23.0 4.5E+02 0.0098 22.0 9.2 101 22-123 16-129 (268)
226 PRK04452 acetyl-CoA decarbonyl 23.0 5.2E+02 0.011 22.7 8.3 56 56-127 150-206 (319)
227 cd04893 ACT_GcvR_1 ACT domains 23.0 2.4E+02 0.0051 18.7 5.1 59 20-81 7-65 (77)
228 PF00382 TFIIB: Transcription 22.8 1.4E+02 0.0031 19.4 3.5 28 171-202 3-30 (71)
229 PF03447 NAD_binding_3: Homose 22.6 1.4E+02 0.003 21.3 3.8 31 13-45 59-89 (117)
230 PF11251 DUF3050: Protein of u 22.5 4.7E+02 0.01 22.0 7.4 62 73-134 31-109 (232)
231 TIGR01182 eda Entner-Doudoroff 22.4 4.3E+02 0.0094 21.5 7.7 89 8-98 2-97 (204)
232 cd00291 SirA_YedF_YeeD SirA, Y 22.4 1.8E+02 0.0039 18.5 4.0 37 9-46 21-57 (69)
233 TIGR02090 LEU1_arch isopropylm 22.0 5.6E+02 0.012 22.7 9.2 99 21-123 17-127 (363)
234 PF12668 DUF3791: Protein of u 21.9 1E+02 0.0023 19.8 2.6 22 115-136 10-31 (62)
235 PRK04175 rpl7ae 50S ribosomal 21.8 1.4E+02 0.0031 22.2 3.6 45 2-46 33-80 (122)
236 smart00354 HTH_LACI helix_turn 21.7 1.4E+02 0.003 19.5 3.3 27 115-141 5-31 (70)
237 TIGR00970 leuA_yeast 2-isoprop 21.7 7E+02 0.015 23.7 9.8 100 22-122 44-159 (564)
238 cd01485 E1-1_like Ubiquitin ac 21.7 1.9E+02 0.0041 23.2 4.6 38 12-50 112-149 (198)
239 cd06070 H2MP_like-2 Putative [ 21.7 63 0.0014 24.4 1.8 37 13-52 26-62 (140)
240 TIGR02660 nifV_homocitr homoci 21.7 5.7E+02 0.012 22.6 9.0 99 21-123 18-128 (365)
241 PF09999 DUF2240: Uncharacteri 21.2 3.9E+02 0.0085 20.6 6.8 106 15-129 26-142 (144)
242 PF14490 HHH_4: Helix-hairpin- 21.2 2.9E+02 0.0064 19.2 7.6 86 108-202 6-92 (94)
243 PRK05562 precorrin-2 dehydroge 20.8 4.3E+02 0.0092 21.9 6.6 52 13-64 84-140 (223)
244 COG1759 5-formaminoimidazole-4 20.6 85 0.0018 27.8 2.5 46 33-78 130-184 (361)
245 smart00877 BMC Bacterial micro 20.6 2.7E+02 0.006 18.6 6.0 51 18-75 5-55 (75)
246 PRK02649 ppnK inorganic polyph 20.6 4.2E+02 0.0091 23.0 6.8 54 24-77 15-89 (305)
247 PF02796 HTH_7: Helix-turn-hel 20.6 1.2E+02 0.0025 18.1 2.5 20 114-133 25-44 (45)
248 TIGR01303 IMP_DH_rel_1 IMP deh 20.5 1.2E+02 0.0026 28.2 3.6 100 15-134 240-350 (475)
249 TIGR01927 menC_gamma/gm+ o-suc 20.4 1.6E+02 0.0035 25.4 4.3 41 10-50 150-195 (307)
250 PTZ00106 60S ribosomal protein 20.4 1.4E+02 0.0029 21.8 3.2 43 2-44 28-72 (108)
251 COG4800 Predicted transcriptio 20.3 1.5E+02 0.0032 23.0 3.4 24 113-136 32-55 (170)
252 PLN02775 Probable dihydrodipic 20.3 1.5E+02 0.0033 25.6 4.0 86 12-100 79-186 (286)
253 PRK09250 fructose-bisphosphate 20.3 4.2E+02 0.0091 23.6 6.8 41 12-52 201-243 (348)
254 PRK13276 cell wall biosynthesi 20.1 2.5E+02 0.0055 23.3 5.1 74 118-197 43-125 (224)
255 PLN03228 methylthioalkylmalate 20.1 7.3E+02 0.016 23.3 10.2 102 22-123 102-224 (503)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.7e-57 Score=385.89 Aligned_cols=211 Identities=36% Similarity=0.629 Sum_probs=208.2
Q ss_pred CCCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHh
Q 044696 1 ALDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 1 ~~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~ 80 (220)
+||++|+++++++|++||||||++|+++++++++++++|++|||||||||+..|++|+|+||+||++++|++++|+|+.|
T Consensus 75 ~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~ 154 (286)
T COG2084 75 LFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAM 154 (286)
T ss_pred HhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchh
Q 044696 81 GK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFA 159 (220)
Q Consensus 81 ~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~ 159 (220)
|+ ++|+|+.|+|+.+|||||++.++++++++|++.|++|+|+|++.+.++++.+++.||+++++.|+|.+++|+|+|++
T Consensus 155 g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v 234 (286)
T COG2084 155 GKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAV 234 (286)
T ss_pred cCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHH
Q 044696 160 EYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIE 215 (220)
Q Consensus 160 ~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~ 215 (220)
+++.||++++++++++. |+++|+.+.+.++|+.+.+.|+|++|++++++.++
T Consensus 235 ~~~~KDl~la~~~A~~~----g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 235 DLMLKDLGLALDAAKEL----GAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999 99999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=9.4e-54 Score=358.65 Aligned_cols=216 Identities=35% Similarity=0.584 Sum_probs=212.0
Q ss_pred CCCccchhhcCCCCCEE-EecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHH
Q 044696 1 ALDPDGIVSALNPGAVY-VDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEV 79 (220)
Q Consensus 1 ~~g~~gi~~~~~~g~~i-vd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~ 79 (220)
+||++|+++++++|+.. ||+||++|++++++++.++.+|++||||||+||..+|++|+|+||+|||++.|+++.|+|+.
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~ 188 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKL 188 (327)
T ss_pred hcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHH
Confidence 58999999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCch
Q 044696 80 LGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGF 158 (220)
Q Consensus 80 ~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~ 158 (220)
||+ ++|+|..|+|+.+|||||+++++++.+++|+++|+++.|+|+.+++|+++.+..+|+.+.++.|.|.+++|.|+|.
T Consensus 189 mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~ 268 (327)
T KOG0409|consen 189 MGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFA 268 (327)
T ss_pred hcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcch
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 159 AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 159 ~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
++++.||++++.+++++. ++|+|+...++|+|+...+.|+|+.|+++|++.+++.+++
T Consensus 269 ~~~m~KDLgla~~~a~~~----~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 269 LKLMVKDLGLALNAAESV----KVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHHHHhhhcc----CCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999 9999999999999999999999999999999999988764
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.6e-51 Score=353.03 Aligned_cols=215 Identities=39% Similarity=0.615 Sum_probs=209.3
Q ss_pred CCCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHh
Q 044696 1 ALDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 1 ~~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~ 80 (220)
++|++|+++++++|++|||+||++|+++++++++++++|++|+|+||+|++..+++|+|++|+||+++++++++|+|+.|
T Consensus 73 ~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~ 152 (292)
T PRK15059 73 LFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL 152 (292)
T ss_pred HcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchh
Q 044696 81 GK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFA 159 (220)
Q Consensus 81 ~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~ 159 (220)
++ ++|+|+.|+|+++||+||++.++++++++|++.+++++|||+++++++++.+.+.|++++.+.|++.+++|+++|++
T Consensus 153 g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l 232 (292)
T PRK15059 153 GKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKI 232 (292)
T ss_pred cCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCch
Confidence 99 99999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcC
Q 044696 160 EYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERING 219 (220)
Q Consensus 160 ~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~ 219 (220)
+++.||++++++++++. |+++|+.+.++++|+.+.+.|+|++|++++++++++..|
T Consensus 233 ~~~~KDl~l~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~ 288 (292)
T PRK15059 233 ALHQKDLNLALQSAKAL----ALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMAN 288 (292)
T ss_pred HHHHHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcC
Confidence 99999999999999999 999999999999999999999999999999999998765
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-48 Score=336.93 Aligned_cols=215 Identities=22% Similarity=0.348 Sum_probs=206.3
Q ss_pred CCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 2 ~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
++++|+++++++|++|||+||++|.+++++++++.++|++|+||||+|++..++.|++++|+||+++++++++|+|+.||
T Consensus 76 ~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g 155 (296)
T PRK15461 76 FGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMG 155 (296)
T ss_pred cCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhh-hhccccCCCCchh
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGE-RMIEKDFRPGGFA 159 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~f~~ 159 (220)
+ ++|+|++|+|+++||+||++...++++++|++.+++++|+|++.++++++.++..++.+..+.+ ++.+++|+++|++
T Consensus 156 ~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 235 (296)
T PRK15461 156 NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMI 235 (296)
T ss_pred CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcch
Confidence 9 9999999999999999999999999999999999999999999999999988877888877765 8999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 160 EYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 160 ~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
+++.||++++++++++. |+|+|+.++++++|+.+.++|+|++|++++++++++..|+
T Consensus 236 ~~~~KD~~l~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 236 DLAHKDLGIALDVANQL----HVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred HHHHhhHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999999999 9999999999999999999999999999999999887764
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=6.7e-47 Score=325.02 Aligned_cols=209 Identities=24% Similarity=0.448 Sum_probs=200.3
Q ss_pred CCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 2 ~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
+|++++.+.+++|+++||+||++|++++++++++.++|++|||+||+|++..++.|++.+|+||+++.+++++|+|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhh-------hhccccC
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGE-------RMIEKDF 153 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~ 153 (220)
+ ++|+|++|+|+++||+||++.++++++++|++.+++++|+|+++++++++.+++.||.+..+.| .+.+++|
T Consensus 151 ~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
T TIGR01692 151 RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGY 230 (288)
T ss_pred CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCC
Confidence 9 9999999999999999999999999999999999999999999999999999888888876655 3467899
Q ss_pred CCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 044696 154 RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVI 214 (220)
Q Consensus 154 ~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~ 214 (220)
+++|+++++.||++++.+++++. |+|+|+.+.++++|+++.++|+|++|++++++++
T Consensus 231 ~~~f~~~~~~KDl~~~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 231 QGGFGTALMLKDLGLAQDAAKSA----GAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred CCCcchHHHHhhHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999 9999999999999999999999999999999876
No 6
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=5.1e-46 Score=370.43 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=210.1
Q ss_pred CCCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 1 ALDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERD--CWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 1 ~~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G--~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
+||++|+++++++|++||||||++|++++++++.+.++| ++||||||+||++.|++|+|++|+||+++++++++|+|+
T Consensus 78 ~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~ 157 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLS 157 (1378)
T ss_pred HhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred Hhcc-ceec-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCC
Q 044696 79 VLGK-PTFM-GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPG 156 (220)
Q Consensus 79 ~~~~-~~~~-G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 156 (220)
.||+ ++|+ |++|+|+++||+||++.++++++++|++.+++++|||++.++++|+.+++.||+++.+.|+|.+++|+++
T Consensus 158 ~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~ 237 (1378)
T PLN02858 158 AMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEG 237 (1378)
T ss_pred HhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCC
Confidence 9999 8775 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 157 GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 157 f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
|+++++.||++++++++++. |+++|+.+.++++|+.+.+.|+|++|++++++++++.+|+
T Consensus 238 F~l~l~~KDl~la~~~A~~~----g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~ 297 (1378)
T PLN02858 238 RFLNVLVQNLGIVLDMAKSL----PFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGV 297 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCC
Confidence 99999999999999999999 9999999999999999999999999999999999988764
No 7
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=5.4e-44 Score=355.96 Aligned_cols=216 Identities=29% Similarity=0.426 Sum_probs=208.6
Q ss_pred CCCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 1 ALDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARE--RDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 1 ~~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~--~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
+||++|+++++++|++||||||++|++++++++++++ +|++|+||||+|||..++.|+|++|+||++++|++++|+|+
T Consensus 398 l~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~ 477 (1378)
T PLN02858 398 LFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLS 477 (1378)
T ss_pred HhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHH
Confidence 3688899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred Hhcc-ceec-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCC
Q 044696 79 VLGK-PTFM-GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPG 156 (220)
Q Consensus 79 ~~~~-~~~~-G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 156 (220)
.|++ ++|+ |++|+|+++||+||++.++++++++|++.+++++|||+++++++++.+++.||+++.+.|+|.+++|+++
T Consensus 478 ~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~ 557 (1378)
T PLN02858 478 ALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPY 557 (1378)
T ss_pred HHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCC
Confidence 9999 8885 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 157 GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 157 f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
|+++++.||++++++++++. |+|+|+++.++++|+.+.++|+|++|++++++++++..|+
T Consensus 558 f~l~l~~KDl~l~~~~a~~~----g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~ 617 (1378)
T PLN02858 558 SALDIFVKDLGIVSREGSSR----KIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGV 617 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 99999999999999999999 9999999999999999999999999999999999987664
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=3.9e-43 Score=302.39 Aligned_cols=215 Identities=30% Similarity=0.490 Sum_probs=207.7
Q ss_pred CCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 2 ~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
++++++++.+++|++|||+||++|.+++++++.+.++|++|+|+||+|+++.+..|++.+|+||+++++++++|+|+.++
T Consensus 77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~ 156 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMA 156 (296)
T ss_pred cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchhh
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAE 160 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~ 160 (220)
. ++|+|+.|+|+.+|+++|++..+++++++|++.++++.|+|++++.+++..+.+.|+.++.+.|++.+++|.++|+++
T Consensus 157 ~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~ 236 (296)
T PRK11559 157 GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRID 236 (296)
T ss_pred CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchH
Confidence 9 999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 161 YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 161 ~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
++.||++++++++++. |+++|+.+.+.++|+.+.+.|+|++|++++++++++.+|+
T Consensus 237 ~~~KDl~~~~~~a~~~----g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~ 292 (296)
T PRK11559 237 LHIKDLANALDTSHGV----GAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKV 292 (296)
T ss_pred HHHHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999999999999999999999999999887763
No 9
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=5.2e-43 Score=301.14 Aligned_cols=215 Identities=40% Similarity=0.691 Sum_probs=207.7
Q ss_pred CCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 2 ~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
|+++++++.+++|++|||+||++|.+++++.+.++++|++|+|+||+|++..+..|++.+|+||+++++++++|+|+.++
T Consensus 74 ~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg 153 (291)
T TIGR01505 74 FGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALG 153 (291)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhc
Confidence 56678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchhh
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAE 160 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~ 160 (220)
. ++|+|+.|.|+.+|++||++...++.+++|++.++++.|+|+++++++++.+.+.|++++.+.+++.+++|+++|+++
T Consensus 154 ~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~ 233 (291)
T TIGR01505 154 KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRID 233 (291)
T ss_pred CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchH
Confidence 9 999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 044696 161 YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERINGK 220 (220)
Q Consensus 161 ~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~~ 220 (220)
++.||++++++++++. |+++|+.+.++++|+.+.+.|+|++|++++++++++.+++
T Consensus 234 ~~~KDl~~~~~~a~~~----g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~ 289 (291)
T TIGR01505 234 LHQKDLNLALDSAKAV----GANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANH 289 (291)
T ss_pred HHHHHHHHHHHHHHHc----CCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999999999999999999999999999887653
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2e-39 Score=280.14 Aligned_cols=203 Identities=22% Similarity=0.236 Sum_probs=189.7
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc---
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--- 82 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--- 82 (220)
++.+.+++|++|||+||++|.++++++++++++|++||||||+|++..+++|+ ++|+||++++|++++|+|+.++.
T Consensus 79 ~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~ 157 (299)
T PRK12490 79 DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGP 157 (299)
T ss_pred HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCC
Confidence 56777889999999999999999999999999999999999999999999998 89999999999999999999983
Q ss_pred -ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhcc-CCChHHHHhhhhhhccccCCCCch
Q 044696 83 -PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAG--LDVRKWRDAVKGG-AAGSMAMELYGERMIEKDFRPGGF 158 (220)
Q Consensus 83 -~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~G--l~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~~~~~f~ 158 (220)
++|+|++|+|+.+||+||++.++++++++|++.++++.| +|+++++++++.+ .+.|++++.+.+++.++++ .|.
T Consensus 158 ~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~~ 235 (299)
T PRK12490 158 GYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LAG 235 (299)
T ss_pred cEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hhh
Confidence 899999999999999999999999999999999999999 9999999999964 4889999999998876543 368
Q ss_pred hhHHHHHH---HHHHHHHhhcccCCCCCccHHHHHH-HHHHHHHHCCCCCCChHHHHHHHH
Q 044696 159 AEYMVKDM---GMGVDVVEESEDERVVVLPGAALGK-QLFSAMVANGDGKFGTQGLVSVIE 215 (220)
Q Consensus 159 ~~~~~KD~---~~~~~~a~~~~~~~g~~~p~~~~~~-~~~~~a~~~G~g~~d~~av~~~~~ 215 (220)
++++.||+ +++++++++. |+|+|++..+. .+|....++|.|..|++++.+++.
T Consensus 236 l~~~~KD~~~~~l~~~~A~~~----g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 236 IKGYVNDSGEGRWTVEEAIEL----AVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhHHHHhcCcHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 89999998 8999999999 99999999995 999999999999999999988764
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.8e-38 Score=287.31 Aligned_cols=189 Identities=20% Similarity=0.289 Sum_probs=177.6
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc---
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG--- 81 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~--- 81 (220)
+|+++.+.+|++|||+||++|+++++++++++++|++||||||+||+++|+.|+ ++|+||++++|++++|+|+.++
T Consensus 91 ~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~ 169 (493)
T PLN02350 91 KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQV 169 (493)
T ss_pred HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhc
Confidence 478899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ---c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhccCCChHHHHhhhhhhcccc-
Q 044696 82 ---K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRKWRDA---VKGGAAGSMAMELYGERMIEKD- 152 (220)
Q Consensus 82 ---~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~- 152 (220)
+ ++|+|++|+|+.+||+||.+.++++++++|++.++++ .|+|++++.++ ++.+.+.|++++.+.+.+..++
T Consensus 170 ~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~ 249 (493)
T PLN02350 170 DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDD 249 (493)
T ss_pred CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCC
Confidence 5 9999999999999999999999999999999999999 59999999999 5678889999999999888775
Q ss_pred CCCCchhhHHHHHHH------HHHHHHhhcccCCCCCccH-HHHHHHHHHHHH
Q 044696 153 FRPGGFAEYMVKDMG------MGVDVVEESEDERVVVLPG-AALGKQLFSAMV 198 (220)
Q Consensus 153 ~~~~f~~~~~~KD~~------~~~~~a~~~~~~~g~~~p~-~~~~~~~~~~a~ 198 (220)
|.++|.++++.||++ ++++.+.+. |+|+|+ .+++.++|....
T Consensus 250 ~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~l----gv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 250 KGDGYLVDKILDKTGMKGTGKWTVQQAAEL----SVAAPTIAASLDARYLSGL 298 (493)
T ss_pred CCCCchHHHHHhhhcccchHHHHHHHHHHh----CCCccHHHHHHHHHHHhcc
Confidence 888999999999999 999999999 999999 777777776653
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.9e-36 Score=260.57 Aligned_cols=201 Identities=20% Similarity=0.236 Sum_probs=182.3
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc---
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--- 82 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--- 82 (220)
++.+.+.+|++|||+||++|..++++++.++++|++|||+||+|++..++.|. ++|+||+++++++++|+|+.+++
T Consensus 79 ~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~ 157 (301)
T PRK09599 79 ELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAE 157 (301)
T ss_pred HHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHccccc
Confidence 56778889999999999999999999999999999999999999999999995 99999999999999999999986
Q ss_pred --ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhccC-CChHHHHhhhhhhccccCCCCc
Q 044696 83 --PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE--AGLDVRKWRDAVKGGA-AGSMAMELYGERMIEKDFRPGG 157 (220)
Q Consensus 83 --~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~--~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~f 157 (220)
++|+|++|+|+.+|+++|++.++++.+++|++.++++ +|+|+++++++++.+. ..|++++.+.+.+.++ +.|
T Consensus 158 ~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~~ 234 (301)
T PRK09599 158 DGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PKL 234 (301)
T ss_pred CCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CCH
Confidence 7999999999999999999999999999999999999 9999999999999875 6899999998888553 233
Q ss_pred h-hhHHHHH---HHHHHHHHhhcccCCCCCccHHHHHHH-HHHHHHHCCCCCCChHHHHHHH
Q 044696 158 F-AEYMVKD---MGMGVDVVEESEDERVVVLPGAALGKQ-LFSAMVANGDGKFGTQGLVSVI 214 (220)
Q Consensus 158 ~-~~~~~KD---~~~~~~~a~~~~~~~g~~~p~~~~~~~-~~~~a~~~G~g~~d~~av~~~~ 214 (220)
+ +..+.|| ++++++.+.+. |+|+|++.++.. +|....+.|+++.|.+++.+++
T Consensus 235 ~~~~~~~kd~~~~~~~~~~A~~~----~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 235 DEISGYVEDSGEGRWTVEEAIDL----AVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHc----CCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 3 4445556 59999999999 999999999554 5999999999999999998876
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-32 Score=248.34 Aligned_cols=181 Identities=19% Similarity=0.280 Sum_probs=162.6
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc-c
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-P 83 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~ 83 (220)
+++++.+.+|++|||+||++|.++++++++++++|++||||||+||+.+|+.|. ++|+||++++|++++|+|+.++. +
T Consensus 73 ~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~ 151 (459)
T PRK09287 73 EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKV 151 (459)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 468899999999999999999999999999999999999999999999999998 99999999999999999999998 8
Q ss_pred -------eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hccCCChHHHHhhhhhhcccc
Q 044696 84 -------TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFAD-EAGLDVRKWRDAV---KGGAAGSMAMELYGERMIEKD 152 (220)
Q Consensus 84 -------~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~ 152 (220)
+|+|+.|+|+.+||++|.+.++.+++++|++.+++ +.|+|++++.+++ +.+...|++++.+.+.+.++|
T Consensus 152 ~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d 231 (459)
T PRK09287 152 EDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKD 231 (459)
T ss_pred cCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCC
Confidence 99999999999999999999999999999999999 5999999999999 577789999999999999999
Q ss_pred CCCCc-hhhHHH-----HH-HHHHHHHHhhcccCCCCCccHHHHH
Q 044696 153 FRPGG-FAEYMV-----KD-MGMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 153 ~~~~f-~~~~~~-----KD-~~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
|.++. -++... |- =+...+.+-++ |+|.|++..+
T Consensus 232 ~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~----~v~~~~i~~A 272 (459)
T PRK09287 232 EETGKPLVDVILDKAGQKGTGKWTSQSALDL----GVPLTLITEA 272 (459)
T ss_pred CCCCCcchHHhcCcccCCcHHHHHHHHHHHh----CCChHHHHHH
Confidence 85443 233321 11 25778888899 9999987765
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.98 E-value=9.5e-31 Score=225.91 Aligned_cols=206 Identities=17% Similarity=0.179 Sum_probs=178.9
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc---
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--- 82 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--- 82 (220)
++.+.+++|++|||+||+.|.+++++.++++++|++|+|+||+|++.+++.| +.+|+||+++++++++|+|+.++.
T Consensus 78 ~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~ 156 (298)
T TIGR00872 78 ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQ 156 (298)
T ss_pred HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCC
Confidence 5677888999999999999999999999999999999999999999999999 699999999999999999999984
Q ss_pred -ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhccC-CChHHHHhhhhhhccccCCCCch
Q 044696 83 -PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEA--GLDVRKWRDAVKGGA-AGSMAMELYGERMIEKDFRPGGF 158 (220)
Q Consensus 83 -~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~f~ 158 (220)
++|+|+.|+|+.+|+++|.+.++.+++++|++.++++. |+|++++.++++.+. ..|++++.+.+.+.++++.+.|.
T Consensus 157 ~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~ 236 (298)
T TIGR00872 157 GYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFS 236 (298)
T ss_pred CEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHH
Confidence 69999999999999999999999999999999999998 579999999999986 68999999988888877766776
Q ss_pred hh-HHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcC
Q 044696 159 AE-YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERING 219 (220)
Q Consensus 159 ~~-~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~ 219 (220)
.. ...+|.+.+++.+.+. |+|+|.+..+. |.+..... .+.-...++...|+..|
T Consensus 237 ~~~~~~~~~r~~v~~a~~~----g~p~P~~~~al--~~~~~~~~-~~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 237 GRVSDSGEGRWTVIAAIDL----GVPAPVIATSL--QSRFASRD-LDDFANKVLAALRKEFG 291 (298)
T ss_pred HHHHhhccHHHHHHHHHHh----CCCHHHHHHHH--HHHHHhCC-CCCcHHHHHHHHHHhhC
Confidence 55 5789999999999999 99999999854 33333321 12234556666666554
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=9.6e-30 Score=230.94 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=157.9
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc-c-
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-P- 83 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~- 83 (220)
++++.+.+|++|||+||+.|.+++++++.+.++|++|||+||+||+.+|+.|. ++|+||++++|++++|+|+.++. +
T Consensus 83 ~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~ 161 (467)
T TIGR00873 83 QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVD 161 (467)
T ss_pred HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcC
Confidence 57788899999999999999999999999999999999999999999999998 99999999999999999999997 6
Q ss_pred -----eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hccCCChHHHHhhhhhhccccCC
Q 044696 84 -----TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFAD-EAGLDVRKWRDAV---KGGAAGSMAMELYGERMIEKDFR 154 (220)
Q Consensus 84 -----~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~ 154 (220)
+|+|+.|+|+.+||++|.+.++++++++|++.+++ +.|+|++++.+++ +.+...|++++...+.+.++|-.
T Consensus 162 ~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d~~ 241 (467)
T TIGR00873 162 GEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKDED 241 (467)
T ss_pred CCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccCCC
Confidence 89999999999999999999999999999999985 7999999999999 57778899999998888776532
Q ss_pred CCchhhHHH-----H-HHHHHHHHHhhcccCCCCCccHHHHH
Q 044696 155 PGGFAEYMV-----K-DMGMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 155 ~~f~~~~~~-----K-D~~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
...-++... | --+..++.+-++ |+|.|++..+
T Consensus 242 ~~~~l~~i~~~~~~~gtg~wt~~~a~~~----~v~~p~i~~a 279 (467)
T TIGR00873 242 GKPLVDKILDTAGQKGTGKWTAISALDL----GVPVTLITES 279 (467)
T ss_pred CCccHHhhcCcccCccHHHHHHHHHHHc----CCCchHHHHH
Confidence 122222221 1 125778889999 9999988765
No 16
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=4e-29 Score=226.89 Aligned_cols=181 Identities=18% Similarity=0.266 Sum_probs=156.6
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc--
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-- 82 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-- 82 (220)
+++++.+.+|++|||+||+.|..++++.+++.++|++|||+||+||+.+|+.|. ++|+||++++|++++|+|+.++.
T Consensus 85 ~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~ 163 (470)
T PTZ00142 85 DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKV 163 (470)
T ss_pred HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 357788899999999999999999999999999999999999999999999999 89999999999999999999985
Q ss_pred -----ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hccCCChHHHHhhhhhhccccC
Q 044696 83 -----PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFAD-EAGLDVRKWRDAV---KGGAAGSMAMELYGERMIEKDF 153 (220)
Q Consensus 83 -----~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~ 153 (220)
++|+|+.|+|+.+||++|.+.++++++++|++.+++ +.|+|++++.+++ +.+...|++++.....+..+|-
T Consensus 164 ~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~ 243 (470)
T PTZ00142 164 GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKKDD 243 (470)
T ss_pred CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhcccc
Confidence 499999999999999999999999999999999998 7999999999998 4677889999887776665542
Q ss_pred CC-CchhhHHH-----HH-HHHHHHHHhhcccCCCCCccHHHHH
Q 044696 154 RP-GGFAEYMV-----KD-MGMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 154 ~~-~f~~~~~~-----KD-~~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
.. ..-++... |- =+...+.+-++ |+|.|+...+
T Consensus 244 ~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~----~v~~p~i~~a 283 (470)
T PTZ00142 244 LGEEHLVDKILDIAGSKGTGKWTVQEALER----GIPVPTMAAS 283 (470)
T ss_pred cCCCcchhhhcCcccCCchHHhHHHHHHHc----CCCchHHHHH
Confidence 21 12333321 11 25778888999 9999988776
No 17
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.96 E-value=9.1e-29 Score=186.98 Aligned_cols=121 Identities=31% Similarity=0.543 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhh-hccccCCCCchhhHHHHHHHH
Q 044696 90 GCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGER-MIEKDFRPGGFAEYMVKDMGM 168 (220)
Q Consensus 90 G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~~f~~~~~~KD~~~ 168 (220)
|+|+++|++||++.++++.+++|++.++++.|||+++++++|+.+++.|++++.+.|+ +.+++|+|+|+++++.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 044696 169 GVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVI 214 (220)
Q Consensus 169 ~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~ 214 (220)
+++++++. |+|+|+.+.++++|+.+.++|+|++|+++++++|
T Consensus 81 ~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEA----GVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHT----T---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 99999999 9999999999999999999999999999999986
No 18
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.93 E-value=3.4e-25 Score=199.11 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=160.6
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCc-EEEecCCCChHHhhccce--------eEEecCCHHhHHHH
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARER--DCW-AVDAPVSGGDIGARDGKL--------AIFAAGDSAVVQWL 73 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~--G~~-~ldapV~g~~~~a~~g~l--------~i~~gG~~~~~~~~ 73 (220)
+++.+++++|++||++||++|.+++++.+.+.++ |.. ++|+||+++|..+..|++ .+++|+++++++++
T Consensus 104 ~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~ 183 (411)
T TIGR03026 104 ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAV 183 (411)
T ss_pred HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHH
Confidence 3567788999999999999999999998776655 654 789999999999999998 89999999999999
Q ss_pred HHHHHHhc-c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccc
Q 044696 74 TPLFEVLG-K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEK 151 (220)
Q Consensus 74 ~~~l~~~~-~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 151 (220)
+++|+.++ + ++++|+++.|+.+|+++|++...+++.++|++.+|++.|+|+++++++++.+ |+|..+
T Consensus 184 ~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~-----------~~i~~~ 252 (411)
T TIGR03026 184 AELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD-----------PRIGFN 252 (411)
T ss_pred HHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC-----------CCCCCC
Confidence 99999998 6 9999999999999999999999999999999999999999999999999864 456677
Q ss_pred cCCCCc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHH
Q 044696 152 DFRPGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 197 (220)
Q Consensus 152 ~~~~~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a 197 (220)
+|.|+| ...++.||++++++.+++. |+++|+++++++..+.-
T Consensus 253 ~~~pg~g~gg~c~~KD~~~l~~~a~~~----g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 253 FLNPGPGVGGHCIPKDPLALIYKAKEL----GYNPELIEAAREINDSQ 296 (411)
T ss_pred cCCCCCCCCCCchhhhHHHHHHHHHhc----CCCcHHHHHHHHHHHHh
Confidence 888865 6778999999999999999 99999999998876654
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.7e-22 Score=162.79 Aligned_cols=199 Identities=21% Similarity=0.263 Sum_probs=158.1
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc----
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK---- 82 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~---- 82 (220)
+.+.+.+|.+|||-..+....+.+.+++++++|++|+|+-.|||+.+++.|- .+|+|||+++|++++|+|+.++.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~G 158 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDG 158 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCc
Confidence 5567889999999999999999999999999999999999999999999998 89999999999999999999873
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhccC-CChHHHHhhhhhhcc-ccCCCCch
Q 044696 83 PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE--AGLDVRKWRDAVKGGA-AGSMAMELYGERMIE-KDFRPGGF 158 (220)
Q Consensus 83 ~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~--~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~-~~~~~~f~ 158 (220)
..|+|+.|+|+.+||++|-+.+++|++++|.+.+.++ +.+|.+.+.++.+.++ ..||+++-....+.+ .+++ .
T Consensus 159 yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~---q 235 (300)
T COG1023 159 YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLD---Q 235 (300)
T ss_pred cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHH---H
Confidence 6899999999999999999999999999999999988 5678888999999877 568888766554432 1111 1
Q ss_pred hhHHHHH---HHHHHHHHhhcccCCCCCccHHHHHH-HHHHHHHHCCCCCCChHH-HHHHHHHhc
Q 044696 159 AEYMVKD---MGMGVDVVEESEDERVVVLPGAALGK-QLFSAMVANGDGKFGTQG-LVSVIERIN 218 (220)
Q Consensus 159 ~~~~~KD---~~~~~~~a~~~~~~~g~~~p~~~~~~-~~~~~a~~~G~g~~d~~a-v~~~~~~~~ 218 (220)
+.-...| =+..++++-+. |+|.|++..+. .+|+.- .+..|+. ++..+|...
T Consensus 236 ~~g~v~dSGEGrWTv~~aldl----gvpaPVia~al~~Rf~S~-----~~d~f~~kvlaalR~~F 291 (300)
T COG1023 236 ISGRVSDSGEGRWTVEEALDL----GVPAPVIALALMMRFRSR-----QDDTFAGKVLAALRNEF 291 (300)
T ss_pred hcCeeccCCCceeehHHHHhc----CCCchHHHHHHHHHHhcc-----chhhHHHHHHHHHHHHh
Confidence 1111111 25567888899 99999987663 444432 2334443 444455443
No 20
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.86 E-value=2.9e-22 Score=158.64 Aligned_cols=86 Identities=34% Similarity=0.628 Sum_probs=76.4
Q ss_pred CCccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 2 LDPDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 2 ~g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
++++ +++++.+|++|||+||++|+++++++++++++|++|||+||+|+++.+++|+|++|+||++++|++++|+|++|+
T Consensus 76 ~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~ 154 (163)
T PF03446_consen 76 FGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMG 154 (163)
T ss_dssp HCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHE
T ss_pred hhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHh
Confidence 4556 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cee-cCC
Q 044696 82 K-PTF-MGG 88 (220)
Q Consensus 82 ~-~~~-~G~ 88 (220)
. ++| +||
T Consensus 155 ~~v~~~~G~ 163 (163)
T PF03446_consen 155 KNVYHYVGP 163 (163)
T ss_dssp EEEEEE-ES
T ss_pred CCceeeeCc
Confidence 9 885 486
No 21
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=8.5e-21 Score=165.81 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=167.3
Q ss_pred hhhcCCCCCEEEecCC-CCHHH--HHHHHHHHHh---cCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHh
Q 044696 7 IVSALNPGAVYVDTTS-SHPAL--AREIFKVARE---RDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST-~~p~~--~~~la~~~~~---~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~ 80 (220)
+++.++++.++|+++| ++|++ .+.+++.+.+ +++.+++.|..........+++.+++||+++.+++++++|+..
T Consensus 90 v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~ 169 (328)
T PRK14618 90 TLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGP 169 (328)
T ss_pred HHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCC
Confidence 4566788999999999 68876 7788888876 7777888776665555556899999999999999999999999
Q ss_pred cc-ce--------ecCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc----cCCCh
Q 044696 81 GK-PT--------FMGG---------AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKG----GAAGS 138 (220)
Q Consensus 81 ~~-~~--------~~G~---------~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~----~~~~s 138 (220)
+. ++ ++|. .|.++.+|+.+|+.......++.|++.++++.|++++++++++.. ++..|
T Consensus 170 ~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s 249 (328)
T PRK14618 170 SFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATS 249 (328)
T ss_pred cEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEecc
Confidence 87 65 4665 699999999999999999999999999999999999999999775 35678
Q ss_pred HHHHhhh--hhhccc---c-CCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHH
Q 044696 139 MAMELYG--ERMIEK---D-FRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVS 212 (220)
Q Consensus 139 ~~~~~~~--~~~~~~---~-~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~ 212 (220)
+..+++. +++.++ + |+++|.+....||++++.+.+++. ++++|+++.+.+++ +++.|...+++
T Consensus 250 ~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~----~~~~Pl~~~~~~~~-------~~~~~~~~~~~ 318 (328)
T PRK14618 250 PHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAH----GHDLPIVEAVARVA-------RGGWDPLAGLR 318 (328)
T ss_pred CCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH-------hCCCCHHHHHH
Confidence 8888874 488888 4 677899999999999999999999 99999999998887 46667777666
Q ss_pred HHH
Q 044696 213 VIE 215 (220)
Q Consensus 213 ~~~ 215 (220)
.+-
T Consensus 319 ~~~ 321 (328)
T PRK14618 319 SLM 321 (328)
T ss_pred HHh
Confidence 553
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.83 E-value=1.6e-19 Score=162.51 Aligned_cols=172 Identities=12% Similarity=0.106 Sum_probs=145.5
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCC--------------cEEEec--CCCChHHhhccceeEEecC-CH
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDC--------------WAVDAP--VSGGDIGARDGKLAIFAAG-DS 67 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~--------------~~ldap--V~g~~~~a~~g~l~i~~gG-~~ 67 (220)
+++.+++++|++||++||++|.+++++...+.+++. .++++| +..|...+..+++..++|| ++
T Consensus 103 ~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~ 182 (415)
T PRK11064 103 KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTP 182 (415)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCH
Confidence 467888999999999999999999999998887643 358888 8888888888999999999 99
Q ss_pred HhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhh
Q 044696 68 AVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGE 146 (220)
Q Consensus 68 ~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~ 146 (220)
+.+++++++++.++. ++++|++++|..+|+++|++.+..++.+.|+..+|++.|+|++++++.++..+.. .
T Consensus 183 ~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri--------~ 254 (415)
T PRK11064 183 VCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV--------N 254 (415)
T ss_pred HHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc--------c
Confidence 999999999999999 9999999999999999999999999999999999999999999999998754311 1
Q ss_pred hhccccCCC--CchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHH
Q 044696 147 RMIEKDFRP--GGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 196 (220)
Q Consensus 147 ~~~~~~~~~--~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~ 196 (220)
-+.| +|.-.++.||...... .. +.++++.+++++..+.
T Consensus 255 -----~l~pG~G~GG~ClpkD~~~L~~---~~----~~~~~l~~~a~~~N~~ 294 (415)
T PRK11064 255 -----ILQPGPGVGGHCIAVDPWFIVA---QN----PQQARLIRTAREVNDG 294 (415)
T ss_pred -----cCCCCCCCCCccccccHHHHHH---hc----CCccHHHHHHHHHHHH
Confidence 1223 5667788999987643 45 6677888888665443
No 23
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.81 E-value=3.3e-19 Score=160.74 Aligned_cols=177 Identities=12% Similarity=0.102 Sum_probs=146.1
Q ss_pred CccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCcEEE--------ecCCCChHHhhccceeEEecC-CHHhHH
Q 044696 3 DPDGIVSALNPGAVYVDTTSSHPALAREIFKVARE--RDCWAVD--------APVSGGDIGARDGKLAIFAAG-DSAVVQ 71 (220)
Q Consensus 3 g~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~--~G~~~ld--------apV~g~~~~a~~g~l~i~~gG-~~~~~~ 71 (220)
+.++|.+++++|++||++||+.|.+++++.+...+ .|.+|.| .|+.+|.......++..+++| +++..+
T Consensus 102 a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~ 181 (425)
T PRK15182 102 ASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAE 181 (425)
T ss_pred HHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHH
Confidence 45688999999999999999999999987655544 4888888 556677776666666655555 566778
Q ss_pred HHHHHHHHhc-c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhc
Q 044696 72 WLTPLFEVLG-K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMI 149 (220)
Q Consensus 72 ~~~~~l~~~~-~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~ 149 (220)
+++++++.+. . ++++++++.|..+|+++|++.+.+++.+.|+..+|++.|+|.+++++++... |. +.
T Consensus 182 ~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~-------~~ 250 (425)
T PRK15182 182 LIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WN-------FL 250 (425)
T ss_pred HHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CC-------cc
Confidence 8999999997 4 8899999999999999999999999999999999999999999999996543 21 11
Q ss_pred cccCCCC-chhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHH
Q 044696 150 EKDFRPG-GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 196 (220)
Q Consensus 150 ~~~~~~~-f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~ 196 (220)
.+.|+ |.-.+.-||....+..+++. |+++++..++++..+.
T Consensus 251 --~~~pG~vGG~ClpkD~~~L~~~a~~~----g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 251 --PFRPGLVGGHCIGVDPYYLTHKSQGI----GYYPEIILAGRRLNDN 292 (425)
T ss_pred --cCCCCccccccccccHHHHHHHHHhc----CCCcHHHHHHHHHHHH
Confidence 13355 67778999999999999999 9999999999877654
No 24
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.1e-17 Score=143.36 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=153.9
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEec---CCHHhHHHHHHHHHHhcc-cee
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA---GDSAVVQWLTPLFEVLGK-PTF 85 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~g---G~~~~~~~~~~~l~~~~~-~~~ 85 (220)
...++.++|.+||. +....++++.+...+..++|.|+.+.... .+..+++ |+++++++++++++.+|+ ++|
T Consensus 106 ~~~~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~ 180 (308)
T PRK06129 106 ALAPPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPWTAPATLARAEALYRAAGQSPVR 180 (308)
T ss_pred HhCCCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34567777765555 55688899998888889999999864221 4778886 899999999999999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchhhHHHHH
Q 044696 86 MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAEYMVKD 165 (220)
Q Consensus 86 ~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD 165 (220)
+|+.+.|. ++||+ +...+.|++.++++.|+|++++.++++.+.+.+|.+ +.|.+..++|.++|...++.||
T Consensus 181 v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp~~~~d~~~~~g~~~~~~k~ 251 (308)
T PRK06129 181 LRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGPFETIDLNAPGGVADYAQRY 251 (308)
T ss_pred ecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCHHHHHhccccccHHHHHHHH
Confidence 99776665 56664 447999999999999999999999999988888776 7888888888889999999999
Q ss_pred HHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHH
Q 044696 166 MGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVS 212 (220)
Q Consensus 166 ~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~ 212 (220)
..++.+++++. +.|.|++....+......+.-++..++..+.+
T Consensus 252 ~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 252 GPMYRRMAAER----GQPVPWDGELVARVEAERRAALPLDQLAARQA 294 (308)
T ss_pred HHHHHhhcccc----CCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999 99999988776666667777788888887655
No 25
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.76 E-value=2.3e-17 Score=147.27 Aligned_cols=169 Identities=15% Similarity=0.065 Sum_probs=139.0
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccce--------eEEecCCHHhHHHHHHHH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKL--------AIFAAGDSAVVQWLTPLF 77 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l--------~i~~gG~~~~~~~~~~~l 77 (220)
++.+ +++|+++|++||++|.+++++.+.+.++|+.| +|..+..|++ .+++||+++..+++.++|
T Consensus 103 ~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l 174 (388)
T PRK15057 103 DVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKALYDNLHPSRIVIGERSERAERFAALL 174 (388)
T ss_pred HHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcccccccCCCEEEEEcCcHHHHHHHHHH
Confidence 4555 68999999999999999999999988877666 8889999999 999999999999999999
Q ss_pred HH--hcc-ce-ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccC
Q 044696 78 EV--LGK-PT-FMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDF 153 (220)
Q Consensus 78 ~~--~~~-~~-~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~ 153 (220)
.. ++. +. +++++++|..+|+++|.+.+..++.+.|...+|++.|+|.+++++++...+..+ +..+. .
T Consensus 175 ~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~-------~~~l~--p 245 (388)
T PRK15057 175 QEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIG-------NHYNN--P 245 (388)
T ss_pred HhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCC-------CccCC--C
Confidence 64 566 54 799999999999999999999999999999999999999999999998643211 11110 0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHH
Q 044696 154 RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 197 (220)
Q Consensus 154 ~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a 197 (220)
-++|.-.++-||.......+ . ++++++.+++++.-+.-
T Consensus 246 G~G~GG~ClpkD~~~L~~~~--~----~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 246 SFGYGGYCLPKDTKQLLANY--Q----SVPNNLISAIVDANRTR 283 (388)
T ss_pred CCCCCCcChhhhHHHHHHhc--c----CCCcHHHHHHHHHHHHh
Confidence 13677889999999886555 5 67788999987765543
No 26
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.75 E-value=4.6e-18 Score=147.77 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=152.8
Q ss_pred chhhcCCCCCEEEecC-CCCHHHHHHHHHHHHhc-----CCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHH
Q 044696 6 GIVSALNPGAVYVDTT-SSHPALAREIFKVARER-----DCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEV 79 (220)
Q Consensus 6 gi~~~~~~g~~ivd~S-T~~p~~~~~la~~~~~~-----G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~ 79 (220)
++.+.+.+++++|+++ |++|++.+++++.+++. ...++++|..+....+...++.++.|++.+.+++++++|+.
T Consensus 90 ~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 169 (325)
T PRK00094 90 QLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHS 169 (325)
T ss_pred HHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCC
Confidence 4556677899999998 99998888888877775 34467777766555566667888888999999999999998
Q ss_pred hcc-ceecCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc----CCC
Q 044696 80 LGK-PTFMGG-----------------AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG----AAG 137 (220)
Q Consensus 80 ~~~-~~~~G~-----------------~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~----~~~ 137 (220)
.+. +++..+ .|.+..+|+++|.+......++.|++.++++.|+|++++++++..+ ...
T Consensus 170 ~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~ 249 (325)
T PRK00094 170 PYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCT 249 (325)
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhcc
Confidence 886 655433 2788889999999999999999999999999999999999876543 122
Q ss_pred hHHHHhhh--hhhcccc-C-----CCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHH
Q 044696 138 SMAMELYG--ERMIEKD-F-----RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQG 209 (220)
Q Consensus 138 s~~~~~~~--~~~~~~~-~-----~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~a 209 (220)
|+..+++. ..+..+. + .++ .+..+.||++++.+.+++. |+++|+.+.+.++| +.+.+...
T Consensus 250 s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~----~~~~P~~~~~~~~~-------~~~~~~~~ 317 (325)
T PRK00094 250 SPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKL----GVEMPITEAVYAVL-------YEGKDPRE 317 (325)
T ss_pred CCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH-------cCCCCHHH
Confidence 33333333 3343332 1 112 5677899999999999999 99999999999998 46778777
Q ss_pred HHHHHH
Q 044696 210 LVSVIE 215 (220)
Q Consensus 210 v~~~~~ 215 (220)
+++.+.
T Consensus 318 ~~~~~~ 323 (325)
T PRK00094 318 AVEDLM 323 (325)
T ss_pred HHHHHh
Confidence 766553
No 27
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.5e-17 Score=144.90 Aligned_cols=180 Identities=20% Similarity=0.282 Sum_probs=150.6
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc----
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG---- 81 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~---- 81 (220)
.+++++.+|.++||-..+....+.+.-+.+.++|++||-+.||||-.+|..|. .||.||++++|+.+.|+|+.++
T Consensus 87 ~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~ 165 (473)
T COG0362 87 QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVD 165 (473)
T ss_pred HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 57889999999999999999999999999999999999999999999999998 8999999999999999999996
Q ss_pred --c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc---cCCChHHHHhhhhhhccccCC
Q 044696 82 --K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRKWRDAVKG---GAAGSMAMELYGERMIEKDFR 154 (220)
Q Consensus 82 --~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~ 154 (220)
. +.|+|+.|+|+.+|+++|-+-++-|+.++|+..+.+. .|++.+++.+++.. +-..|.+++-...-+...|-+
T Consensus 166 g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~kD~~ 245 (473)
T COG0362 166 GEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKDEE 245 (473)
T ss_pred CCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhcCcc
Confidence 4 8999999999999999999999999999999999988 99999999888765 445677777665555555544
Q ss_pred CC-chhhHHHHHH------HHHHHHHhhcccCCCCCccHHHHH
Q 044696 155 PG-GFAEYMVKDM------GMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 155 ~~-f~~~~~~KD~------~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
.+ --++..+.-. +.....|-+. |+|+++...+
T Consensus 246 ~~kplvd~ILD~AgQKGTGkWt~~~Aldl----GvP~t~I~ea 284 (473)
T COG0362 246 GGKPLVDKILDKAGQKGTGKWTVISALDL----GVPLTLITEA 284 (473)
T ss_pred cCCchHHHHHHHhcCCCcchhhHHHHHHc----CCCcHHHHHH
Confidence 33 2233332111 4566778888 9999876543
No 28
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=7.1e-18 Score=146.32 Aligned_cols=185 Identities=15% Similarity=0.148 Sum_probs=149.3
Q ss_pred CCCCCEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCC--CChHHh-----hccceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 11 LNPGAVYVDTTS-SHPALAREIFKVARERDCWAVDAPVS--GGDIGA-----RDGKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 11 ~~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~--g~~~~a-----~~g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
+.+++++|++|+ ++|++.+.+++.+.. +|.++||. ++|..+ +.+++++++|++.+.+++++++|+.++.
T Consensus 72 ~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~ 148 (308)
T PRK14619 72 LPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERF 148 (308)
T ss_pred CCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcE
Confidence 567899999998 889888888877754 47788984 454433 2258899999999999999999999987
Q ss_pred -ceecCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhh
Q 044696 83 -PTFMGG-----------------AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELY 144 (220)
Q Consensus 83 -~~~~G~-----------------~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~ 144 (220)
+++.++ .|.+..+|+.+|........++.|++.++++.|++++.++++ . +.+.++. .
T Consensus 149 ~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~-~-g~gd~~~---t 223 (308)
T PRK14619 149 RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL-S-GLGDLLA---T 223 (308)
T ss_pred EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc-c-chhhhhe---e
Confidence 885555 223455569999999999999999999999999999999984 3 4455444 3
Q ss_pred hhhhccccCCCCchhhHH----------------HHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChH
Q 044696 145 GERMIEKDFRPGGFAEYM----------------VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQ 208 (220)
Q Consensus 145 ~~~~~~~~~~~~f~~~~~----------------~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~ 208 (220)
.+.+.+++|.++|.+... .||++++.+++++. |+++|+...+.++| +++.+..
T Consensus 224 ~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~----~~~~Pl~~~v~~i~-------~~~~~~~ 292 (308)
T PRK14619 224 CTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQ----NIAVPITEQVYRLL-------QGEITPQ 292 (308)
T ss_pred ecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHc----CCCCCHHHHHHHHH-------cCCCCHH
Confidence 467778888888888877 99999999999999 99999999999998 4666776
Q ss_pred HHHHHH
Q 044696 209 GLVSVI 214 (220)
Q Consensus 209 av~~~~ 214 (220)
.+++.+
T Consensus 293 ~~~~~l 298 (308)
T PRK14619 293 QALEEL 298 (308)
T ss_pred HHHHHH
Confidence 666554
No 29
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.64 E-value=5e-15 Score=130.11 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=104.6
Q ss_pred chhhcCCCCCEEEecCCCCHHHH-HHHHHHHH----hcCCcEEE-ecCCCChHHhhccceeEEecC--------CHHhHH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALA-REIFKVAR----ERDCWAVD-APVSGGDIGARDGKLAIFAAG--------DSAVVQ 71 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~-~~la~~~~----~~G~~~ld-apV~g~~~~a~~g~l~i~~gG--------~~~~~~ 71 (220)
++.+++++|++|||+||++|... +.+.+++. ..|+.+.+ +||.|+ +.+.+.+|+|| +++.++
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e 176 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIE 176 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHH
Confidence 57788899999999999999988 77777775 45776664 334444 56677888877 899999
Q ss_pred HHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 044696 72 WLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKG 133 (220)
Q Consensus 72 ~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~ 133 (220)
+++|+|+.++. +++++ +|.++.+|+++|++.+.++++++|++.++++.|.++.++++-+..
T Consensus 177 ~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~ 238 (342)
T PRK12557 177 KCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQIL 238 (342)
T ss_pred HHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999 86666 699999999999999999999999999999999999999887643
No 30
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.2e-14 Score=125.27 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=142.5
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc----
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG---- 81 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~---- 81 (220)
.+.+.+.+|.+|||-.......+.+..+++.++|+-||-+.||||..+|+.|. .+|.||+.++|..++++|+.++
T Consensus 90 ~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~ 168 (487)
T KOG2653|consen 90 ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVS 168 (487)
T ss_pred HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhc
Confidence 57788999999999999999888888889999999999999999999999998 8899999999999999999885
Q ss_pred ---c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhccC---CChHHHHhhhhhhccccC
Q 044696 82 ---K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRKWRDAVKGGA---AGSMAMELYGERMIEKDF 153 (220)
Q Consensus 82 ---~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~~~~~l~~~~---~~s~~~~~~~~~~~~~~~ 153 (220)
+ +.|+|+-|+|+.+||++|-+.++-|+.++|+..+.++ .|++.+++.+++..+- ..|++++-...-+.=+|-
T Consensus 169 ~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk~~d~ 248 (487)
T KOG2653|consen 169 DGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKFKDE 248 (487)
T ss_pred CCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhheecc
Confidence 3 6899999999999999999999999999999999999 9999999999987642 345555544332221111
Q ss_pred CCCchh-hHH-----HHHH-HHHHHHHhhcccCCCCCccHHHHH
Q 044696 154 RPGGFA-EYM-----VKDM-GMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 154 ~~~f~~-~~~-----~KD~-~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
+ +-.+ +-. .|.. ......+-+. |+|.|+...+
T Consensus 249 ~-G~~lv~kI~D~aGqKGTGkwt~~~Ale~----g~Pv~lI~ea 287 (487)
T KOG2653|consen 249 D-GKPLVDKILDKAGQKGTGKWTVISALEL----GVPVTLIGEA 287 (487)
T ss_pred C-CChHHHHHHhhhcCCCccHHHHHHHHHh----CCChHHHHHH
Confidence 1 1111 111 1111 3456677788 9998876544
No 31
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=1.5e-13 Score=120.40 Aligned_cols=185 Identities=18% Similarity=0.084 Sum_probs=139.3
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEec-----CCCChHHhh---ccceeEEecCCHHhHHHHHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAP-----VSGGDIGAR---DGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap-----V~g~~~~a~---~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
+.+.+.++++||++++ .+...+.+.+.+.+ .++++++ ++++|..+. .|++.+. +.+.++++.++|+
T Consensus 93 l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~---~~~~~~~~~~~l~ 166 (341)
T PRK08229 93 LAGHARPGAVVVSFQN-GVRNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGALAIE---ASPALRPFAAAFA 166 (341)
T ss_pred HHhhCCCCCEEEEeCC-CCCcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCceEec---CCchHHHHHHHHH
Confidence 4556678888888854 56656667766643 4577763 354544433 5665443 3456789999999
Q ss_pred Hhcc-ceecCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHHHHHHhcc---
Q 044696 79 VLGK-PTFMGGAGCGQSCKIANQIVVGAN--------------------LLGLSEGLVFADEAGLDVRKWRDAVKGG--- 134 (220)
Q Consensus 79 ~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~--------------------~~~~aEa~~la~~~Gl~~~~~~~~l~~~--- 134 (220)
..+. +.+.++++.++..|+++|++...+ ..++.|++.++++.|++++.+.++...+
T Consensus 167 ~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~ 246 (341)
T PRK08229 167 RAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPR 246 (341)
T ss_pred hcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhh
Confidence 9888 999999999999999999754444 3789999999999999988765554433
Q ss_pred --CCChHHHHhhhhhhccccCCCCchhhHHHHHHH------------HHHHHHhhcccCCCCCccHHHHHHHHHHHHHHC
Q 044696 135 --AAGSMAMELYGERMIEKDFRPGGFAEYMVKDMG------------MGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 200 (220)
Q Consensus 135 --~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~------------~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~ 200 (220)
...++.++...+++.+.++.+ ...|.||+. .+++.+++. |+++|..+.+.++++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~----gv~~P~~~~~~~~~~~~~~~ 319 (341)
T PRK08229 247 LLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRL----GAPAPVNARLCALVHEAERA 319 (341)
T ss_pred hhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHc----CCCCcHHHHHHHHHHHHHhC
Confidence 245667777777777766543 346999999 799999999 99999999999999999888
Q ss_pred CCCC
Q 044696 201 GDGK 204 (220)
Q Consensus 201 G~g~ 204 (220)
|...
T Consensus 320 ~~~~ 323 (341)
T PRK08229 320 GARP 323 (341)
T ss_pred CCcC
Confidence 7544
No 32
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.30 E-value=1.7e-11 Score=104.88 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=124.0
Q ss_pred chhhcCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCcEEEecCCCC---hHHhhccceeEEecCC---HHhHHHHHHHHH
Q 044696 6 GIVSALNPGAVYVDT-TSSHPALAREIFKVARERDCWAVDAPVSGG---DIGARDGKLAIFAAGD---SAVVQWLTPLFE 78 (220)
Q Consensus 6 gi~~~~~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~ldapV~g~---~~~a~~g~l~i~~gG~---~~~~~~~~~~l~ 78 (220)
++.+.+.++++||++ +++++++.+++. .. ++||+++ ++.+..+.++++++|+ ++.++.++++|+
T Consensus 84 ~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~ 154 (279)
T PRK07679 84 PFKEYIHNNQLIISLLAGVSTHSIRNLL----QK-----DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFE 154 (279)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHc----CC-----CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHH
Confidence 344556788999996 999999888743 12 3788887 4577778889999987 568899999999
Q ss_pred Hhcc-ce------e--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhccCCCh-HHHH--hhh
Q 044696 79 VLGK-PT------F--MGGAGCGQSCKIANQIVVGANLLGLSEGLV-FADEAGLDVRKWRDAVKGGAAGS-MAME--LYG 145 (220)
Q Consensus 79 ~~~~-~~------~--~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~-la~~~Gl~~~~~~~~l~~~~~~s-~~~~--~~~ 145 (220)
.+|. ++ | +|..|+|.++ +..+.|++. .+++.|+|+++..+++..+...+ .++. .+.
T Consensus 155 ~~G~~~~v~e~~~~~~~a~~Gsgpa~-----------~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~ 223 (279)
T PRK07679 155 TIGLVSVVEEEDMHAVTALSGSGPAY-----------IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKH 223 (279)
T ss_pred hCCcEEEeCHHHhhhHHHhhcCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 76 6 6777887773 334445554 58999999999999998855333 5554 467
Q ss_pred hhhccccC-CCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCC
Q 044696 146 ERMIEKDF-RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 201 (220)
Q Consensus 146 ~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G 201 (220)
|..+.+++ +|+|+.... ++..++. |+.--+.+++.+-++++.+.|
T Consensus 224 ~~~l~~~v~spgg~t~~g-------l~~l~~~----~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 224 PSILRKEITSPGGTTEAG-------IEVLQEH----RFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHhcCCCchHHHHH-------HHHHHHC----ChHHHHHHHHHHHHHHHHHHH
Confidence 78888888 678865554 4445566 888888888888888887765
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.24 E-value=1.4e-10 Score=106.95 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=98.3
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCC---HHhHHHHHHHHHHhcc-ceecC
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGD---SAVVQWLTPLFEVLGK-PTFMG 87 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~---~~~~~~~~~~l~~~~~-~~~~G 87 (220)
.++.+||++||+++..+ ++++.+..++..+++.|+... .-+.|+.+++|+ ++++++++++|+.+|+ +++++
T Consensus 106 ~~~~~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~ 180 (495)
T PRK07531 106 ARPDALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA 180 (495)
T ss_pred CCCCcEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec
Confidence 34456899999998865 778888888889999998732 245789999998 6899999999999999 99998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHhccCCChH
Q 044696 88 GAGCGQSCKIANQIVVGANLLGL-SEGLVFADEAGLDVRKWRDAVKGGAAGSM 139 (220)
Q Consensus 88 ~~G~a~~~Kl~~n~~~~~~~~~~-aEa~~la~~~Gl~~~~~~~~l~~~~~~s~ 139 (220)
|.++|++...++.++ .|++.++++.|+|++++.++++.+.+.+|
T Consensus 181 --------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 181 --------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred --------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 688899998888885 99999999999999999999998876654
No 34
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.12 E-value=5.8e-10 Score=102.99 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=87.3
Q ss_pred hcCCCCCEE-EecCCCCHHHHHHHHHHHHh----cCCcEEE-ecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHH
Q 044696 9 SALNPGAVY-VDTTSSHPALAREIFKVARE----RDCWAVD-APVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEV 79 (220)
Q Consensus 9 ~~~~~g~~i-vd~ST~~p~~~~~la~~~~~----~G~~~ld-apV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~ 79 (220)
..+++++++ .|+||++|+ ++++.+.. .|.||++ +|++ +|+.+++| +++++++++++++.
T Consensus 110 ~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~ 177 (507)
T PRK08268 110 AIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------KLVEVVSGLATDPAVADALYALARA 177 (507)
T ss_pred hhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------eeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345678888 499999997 45555543 4999999 9999 58999986 88999999999999
Q ss_pred hcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 80 LGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 80 ~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
+++ ++++|+ +|. ++|-++. ..+.|++.++++.|++++++-+++..+.
T Consensus 178 lgk~pv~v~d~pGf------i~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~~~~ 226 (507)
T PRK08268 178 WGKTPVRAKDTPGF------IVNRAAR---PYYTEALRVLEEGVADPATIDAILREAA 226 (507)
T ss_pred cCCceEEecCCCCh------HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 999 999997 783 5555543 4899999999999999999999997644
No 35
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.09 E-value=7.4e-09 Score=94.79 Aligned_cols=174 Identities=14% Similarity=0.071 Sum_probs=130.9
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhc--C--CcEEEecCC--CChHHhhcccee-EEecCCH-----HhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARER--D--CWAVDAPVS--GGDIGARDGKLA-IFAAGDS-----AVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~--G--~~~ldapV~--g~~~~a~~g~l~-i~~gG~~-----~~~~~~~ 74 (220)
|.+.+++|++||.-||+.|.+++++.+.+.++ | .++.-+|-. -|..--.--+.. +++||.. ++.++++
T Consensus 113 i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~ 192 (473)
T PLN02353 113 IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALK 192 (473)
T ss_pred HHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHH
Confidence 56678899999999999999999999888764 4 346777843 232222222333 5569852 3567788
Q ss_pred HHHHHhcc--ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhcccc
Q 044696 75 PLFEVLGK--PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKD 152 (220)
Q Consensus 75 ~~l~~~~~--~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 152 (220)
.++..+.+ ++.+.++-.|...|++.|.+....++.+.|...+|++.|+|..++.+.+...+-.+ +....
T Consensus 193 ~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~rig-------~~~l~-- 263 (473)
T PLN02353 193 DVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIG-------PKFLN-- 263 (473)
T ss_pred HHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcCC-------CCCCC--
Confidence 88888763 66778889999999999999999999999999999999999999998887643111 11111
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhcccCCCCC--ccHHHHHHHH
Q 044696 153 FRPGGFAEYMVKDMGMGVDVVEESEDERVVV--LPGAALGKQL 193 (220)
Q Consensus 153 ~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~--~p~~~~~~~~ 193 (220)
--++|.-.++.||.......+++. |++ +++...+.+.
T Consensus 264 PG~G~GG~ClpkD~~~L~~~a~~~----g~~~~~~l~~~~~~i 302 (473)
T PLN02353 264 ASVGFGGSCFQKDILNLVYICECN----GLPEVAEYWKQVIKM 302 (473)
T ss_pred CCCCCCCcchhhhHHHHHHHHHHc----CCchHHHHHHHHHHH
Confidence 013567778999999999999999 988 7777666543
No 36
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.02 E-value=4.4e-08 Score=83.68 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=91.7
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCC----hHHhh----ccceeEEec---CCHHhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGG----DIGAR----DGKLAIFAA---GDSAVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~----~~~a~----~g~l~i~~g---G~~~~~~~~~ 74 (220)
+.+ +.++++|+|++|+.+...+.+.+. .+.+|+.+ |+.|+ |..+. .|...++++ ++++.+++++
T Consensus 78 l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~ 153 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAK 153 (275)
T ss_pred Hhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence 455 678999999999988877766554 24679999 99884 65443 678888886 4667889999
Q ss_pred HHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 75 PLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++|+.+|. ++++++.+....+|+++|+.. ....++++++. .+.+.+.+.++...+
T Consensus 154 ~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~g 209 (275)
T PRK08507 154 EIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGGG 209 (275)
T ss_pred HHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcccc
Confidence 99999999 999999999999999999865 55666666662 366766666665543
No 37
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.94 E-value=3.6e-08 Score=87.89 Aligned_cols=115 Identities=18% Similarity=0.291 Sum_probs=97.6
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEE-EecCCCChHHhhccceeEEecC-CHHhHHHHHHHHHHhcc-c
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAV-DAPVSGGDIGARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-P 83 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~l-dapV~g~~~~a~~g~l~i~~gG-~~~~~~~~~~~l~~~~~-~ 83 (220)
+.+ +++|++|+|+||+.+...+++.+... ..|| ..|+.|+....-.+.+.+++.| +++++++++++++.+|. +
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 445 78999999999999988888876542 2688 9999998777778888888888 55788999999999999 9
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 044696 84 TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRD 129 (220)
Q Consensus 84 ~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~ 129 (220)
+++++.+....+++++. + .++.+++++..+++ .+++.+.+++
T Consensus 238 ~~~~~~~HD~~~a~vsh-L--pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 238 HRISAVEHDQNMAFIQA-L--RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EECCHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999983 3 88999999999988 8888877654
No 38
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.94 E-value=4.5e-09 Score=97.00 Aligned_cols=108 Identities=21% Similarity=0.203 Sum_probs=85.1
Q ss_pred cCCCCCEEE-ecCCCCHHH-HHHHHHHHHhcCCcEEE-ecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhcc-
Q 044696 10 ALNPGAVYV-DTTSSHPAL-AREIFKVARERDCWAVD-APVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGK- 82 (220)
Q Consensus 10 ~~~~g~~iv-d~ST~~p~~-~~~la~~~~~~G~~~ld-apV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~~- 82 (220)
.++++.++. |+||.+++. +..+....+..|.||++ +|++ .|+.+++| ++++++++.++++.+++
T Consensus 109 ~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~---------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 109 LCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM---------ALVEVVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred hCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 344455444 777777763 44444444567999999 9999 38999999 99999999999999999
Q ss_pred ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 83 PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 83 ~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
++++|+ +|. ++|+++ ...+.|++.+.++.+++++++-++++.+.
T Consensus 180 pv~v~d~pGf-----i~Nrl~----~~~~~EA~~l~e~g~a~~~~ID~al~~~~ 224 (503)
T TIGR02279 180 PVHCHSTPGF-----IVNRVA----RPYYAEALRALEEQVAAPAVLDAALRDGA 224 (503)
T ss_pred eeEeCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 999997 785 444444 35999999999999999999999998644
No 39
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.93 E-value=1.3e-08 Score=86.28 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=112.7
Q ss_pred chhhcCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCcEEE-ecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhccc
Q 044696 6 GIVSALNPGAVYVDT-TSSHPALAREIFKVARERDCWAVD-APVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP 83 (220)
Q Consensus 6 gi~~~~~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~ld-apV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~~ 83 (220)
++.+.++++++||.+ ++++++..+ ++...+ +++. .|..+...+.....++...+++++.+++++++|+.+|.+
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~ 154 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLADLQ---EWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKI 154 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHHHH---HHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence 344566789988876 555555544 222221 6774 676665544433333333345889999999999999996
Q ss_pred eecC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHH-h--hhhh-hcc
Q 044696 84 TFMG---------GAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAME-L--YGER-MIE 150 (220)
Q Consensus 84 ~~~G---------~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~-~--~~~~-~~~ 150 (220)
+|++ ..|+|.++ ++.++.+++|+ +++.|+|+++..+++..+...++.+- . .-|. +.+
T Consensus 155 ~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~ 224 (266)
T PLN02688 155 WVVDEKLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKD 224 (266)
T ss_pred EEeCHHHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6764 46776664 66788888888 89999999999999988765555432 1 1111 111
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCC
Q 044696 151 KDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 201 (220)
Q Consensus 151 ~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G 201 (220)
.--+|+- -....++..++. |++-.+.+++.+.++++.+.+
T Consensus 225 ~v~spgG-------~t~~~l~~l~~~----g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 225 MVTSPGG-------TTIAGVHELEKG----GFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred hCCCCch-------HHHHHHHHHHHC----ChHHHHHHHHHHHHHHHHHhc
Confidence 1112221 125566777788 999999999999999998865
No 40
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.91 E-value=3.6e-09 Score=92.22 Aligned_cols=108 Identities=24% Similarity=0.350 Sum_probs=91.9
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHH----HhcCCcEEEec-------CCCChHHhhccceeEEecCCHHhHHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVA----RERDCWAVDAP-------VSGGDIGARDGKLAIFAAGDSAVVQWLTP 75 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~----~~~G~~~ldap-------V~g~~~~a~~g~l~i~~gG~~~~~~~~~~ 75 (220)
+.+.+++++++ +||+|+-...++++.+ +-.|.||++.| |++++ ++++++++++++
T Consensus 101 l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~------------~t~~e~~~~~~~ 166 (314)
T PRK08269 101 LGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD------------ATDPAVVDRLAA 166 (314)
T ss_pred HHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC------------CCCHHHHHHHHH
Confidence 44567778777 8999999999999988 45799999999 88877 789999999999
Q ss_pred HHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCC
Q 044696 76 LFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAA 136 (220)
Q Consensus 76 ~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~ 136 (220)
+++.+|+ ++++|+.+ | +++.......+.|++.++++.+++++++.+++..+.+
T Consensus 167 ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 167 LLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred HHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 9999999 99999843 2 3566677889999999999999999999999986654
No 41
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=1.1e-07 Score=84.02 Aligned_cols=176 Identities=16% Similarity=0.099 Sum_probs=135.4
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccce--------eEEecCCHH-hHHHHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKL--------AIFAAGDSA-VVQWLTPLF 77 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l--------~i~~gG~~~-~~~~~~~~l 77 (220)
+.++++..++||.-||+.|.+++++.+.+.+....= |--|.-.|.--+.|+. -+.+|...+ +.+..+.++
T Consensus 106 i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely 184 (414)
T COG1004 106 IGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELY 184 (414)
T ss_pred HHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHH
Confidence 556776669999999999999999999887654221 4455666666666654 478888665 467777887
Q ss_pred HHh--cc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCC
Q 044696 78 EVL--GK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFR 154 (220)
Q Consensus 78 ~~~--~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~ 154 (220)
+.+ .. .+.+-..-.|...|++.|.+++.=++.+.|.-.+|++.|+|..++.+-+.... +..++.++- .
T Consensus 185 ~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD~-------RIG~~fl~a--G 255 (414)
T COG1004 185 APFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEGIGLDP-------RIGNHFLNA--G 255 (414)
T ss_pred hhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCc-------hhhHhhCCC--C
Confidence 765 34 56666778899999999999999999999999999999999999998887532 111222211 1
Q ss_pred CCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHH
Q 044696 155 PGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 196 (220)
Q Consensus 155 ~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~ 196 (220)
.+|.-.++-||.+..+..+++. |.+.+++.++.+.-++
T Consensus 256 ~GyGGsCfPKD~~AL~~~a~~~----~~~~~ll~avv~vN~~ 293 (414)
T COG1004 256 FGYGGSCFPKDTKALIANAEEL----GYDPNLLEAVVEVNER 293 (414)
T ss_pred CCCCCcCCcHhHHHHHHHHHhc----CCchHHHHHHHHHHHH
Confidence 3677889999999999999999 9999999998665443
No 42
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=9.5e-08 Score=84.29 Aligned_cols=130 Identities=16% Similarity=0.215 Sum_probs=108.0
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhc--------CCcEEEec--CCCChHHhhccceeEEecCCHH-hHHHHH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARER--------DCWAVDAP--VSGGDIGARDGKLAIFAAGDSA-VVQWLT 74 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~--------G~~~ldap--V~g~~~~a~~g~l~i~~gG~~~-~~~~~~ 74 (220)
-|.+.+++|.++|--||+.|.+++++..++.+. .....-+| |.-|...-+--+..=.+||..+ ..+.+.
T Consensus 113 sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~ 192 (436)
T COG0677 113 SIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAA 192 (436)
T ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHH
Confidence 367889999999999999999999999999874 23345566 5555544444455667888655 556778
Q ss_pred HHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 75 PLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
-+.+.+-. ++.+.++-.|.+.||.-|.+-..+++...|...+++++|||..+++++.+.-+
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt~P 254 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANTKP 254 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhccCC
Confidence 88888888 88899999999999999999999999999999999999999999999888754
No 43
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=7.1e-08 Score=82.92 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=83.9
Q ss_pred hhhcCCCCCEE-EecCCCCHHHHHHHHHHH-HhcCCcEEEecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhc
Q 044696 7 IVSALNPGAVY-VDTTSSHPALAREIFKVA-RERDCWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLG 81 (220)
Q Consensus 7 i~~~~~~g~~i-vd~ST~~p~~~~~la~~~-~~~G~~~ldapV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~ 81 (220)
+.+.+++++++ +|+||++|++..+..+.. +..|++|+ +|+.++ +|+.|++| +++++++++++++.++
T Consensus 103 l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg 174 (288)
T PRK09260 103 ADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVELIRGLETSDETVQVAKEVAEQMG 174 (288)
T ss_pred HHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 45667888866 899999998766555432 22599999 999875 68999999 9999999999999999
Q ss_pred c-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 82 K-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 82 ~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
+ ++++|+ +|. +.|=++ ...+.|++.+.+.--.+++++=..+..+
T Consensus 175 ~~~v~v~d~~Gf------~~nRl~---~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 175 KETVVVNEFPGF------VTSRIS---ALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred CeEEEecCcccH------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 9 999997 773 333333 3467788888877556787776655543
No 44
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.73 E-value=1.1e-06 Score=79.98 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=93.8
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhc
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLG 81 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~ 81 (220)
.+.+.++++++|+|++|+.+...+.+.+.+. .|++|+.+ |+.|.....-.|+..+++.+ +++.+++++++|+.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 3556678999999999999999888887754 58899999 99987666678888888876 4678899999999999
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDA 130 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~ 130 (220)
. ++++++. .--|++.+.....++.+++.+..+ ++.|++.++....
T Consensus 156 ~~v~~~~~e---~HD~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 156 ARVIVTSPE---EHDRIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CEEEECCHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 9 8888865 335555666666777777777665 6779998775433
No 45
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.56 E-value=2.2e-06 Score=73.45 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE-ecCCCCh-HHhhccceeEEec----------CCHHhHHHH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVD-APVSGGD-IGARDGKLAIFAA----------GDSAVVQWL 73 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld-apV~g~~-~~a~~g~l~i~~g----------G~~~~~~~~ 73 (220)
.+.+.+.++.+|+|++|+.+...+++.+. +.+|+. .|+.|++ .+.+.+...+|.| ++++.++.+
T Consensus 76 ~l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v 151 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIV 151 (279)
T ss_pred HHHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHH
Confidence 45566788999999999998877655533 346898 6999986 6666666555544 578899999
Q ss_pred HHHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHH
Q 044696 74 TPLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLL 108 (220)
Q Consensus 74 ~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~ 108 (220)
+++++.+|. ++++++.+....+|+++|+.......
T Consensus 152 ~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 152 EELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH
Confidence 999999999 99999999999999999887755533
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=1.4e-06 Score=75.65 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHh----cCCcEEEecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhcc-c
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARE----RDCWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGK-P 83 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~ldapV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~~-~ 83 (220)
.++.++|.++|.++.. .++++.+.. .|++|.+.|.. +.+..++.| +++++++++++|+.+|. +
T Consensus 105 ~~~~~ii~s~tsg~~~-~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~ 175 (311)
T PRK06130 105 CDPDTIFATNTSGLPI-TAIAQAVTRPERFVGTHFFTPADV--------IPLVEVVRGDKTSPQTVATTMALLRSIGKRP 175 (311)
T ss_pred CCCCcEEEECCCCCCH-HHHHhhcCCcccEEEEccCCCCcc--------CceEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 3555667677766653 366666643 25666555532 235566666 57899999999999999 9
Q ss_pred eecCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCC
Q 044696 84 TFMGG--AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAA 136 (220)
Q Consensus 84 ~~~G~--~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~ 136 (220)
+++++ +|. ++||++. ..++|++.++++.|+|++++.++++.+.+
T Consensus 176 v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 176 VLVKKDIPGF-----IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred EEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 99985 565 7888754 67999999999999999999999976544
No 47
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.33 E-value=1e-05 Score=58.46 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCC--CchhhHHHHHHHH
Q 044696 91 CGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRP--GGFAEYMVKDMGM 168 (220)
Q Consensus 91 ~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~--~f~~~~~~KD~~~ 168 (220)
.|..+|++.|.+....++.+.|...+|++.|+|..++.+.+...+.. ...-+.| +|.-..+.||...
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri-----------~~~~~~pg~g~GG~ClpkD~~~ 71 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI-----------GPHYLRPGPGFGGSCLPKDPYA 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT-----------TSSS-S-SSS--SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc-----------ccccCCCCCCCCCcchhhhHHH
Confidence 57899999999999999999999999999999999999999864321 1111223 5777899999999
Q ss_pred HHHHHhhcccCCCCCccHHHHHHHHHH
Q 044696 169 GVDVVEESEDERVVVLPGAALGKQLFS 195 (220)
Q Consensus 169 ~~~~a~~~~~~~g~~~p~~~~~~~~~~ 195 (220)
....+++. |.+.++++++.+..+
T Consensus 72 L~~~~~~~----g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 72 LIYLAKEL----GYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCCHHHHHHHHHhcC
Confidence 99999999 999999888877644
No 48
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.27 E-value=6.6e-06 Score=70.91 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=82.7
Q ss_pred hhhcCCCCCEEE-ecCCCCHHHHHHHHHH-HHhcCCcEEEecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhc
Q 044696 7 IVSALNPGAVYV-DTTSSHPALAREIFKV-ARERDCWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLG 81 (220)
Q Consensus 7 i~~~~~~g~~iv-d~ST~~p~~~~~la~~-~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~ 81 (220)
+.+.++++++|+ |+||+++.+..+.... .+-.|+||.+.|+.+ .++.++.| +++++++++++|+.+|
T Consensus 105 l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lveiv~g~~t~~e~~~~~~~ll~~lG 176 (295)
T PLN02545 105 LDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEIIRGADTSDEVFDATKALAERFG 176 (295)
T ss_pred HHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 345577888886 9999999876655432 233589999999874 44666654 8899999999999999
Q ss_pred c-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 82 K-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 82 ~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
+ ++++++ +| .++|+++. ..+.|++.+.+.--.+++++=..+..+
T Consensus 177 ~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 177 KTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred CeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9 999997 67 35565544 358899999888778888876665543
No 49
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.03 E-value=2.8e-05 Score=66.91 Aligned_cols=110 Identities=22% Similarity=0.180 Sum_probs=78.4
Q ss_pred chhhcCCCCCEEE-ecCCCCHHHHHHHHHHHHh----cCCcEEE-ecCCCChHHhhccceeEEecCCHHhHHHHHHHHHH
Q 044696 6 GIVSALNPGAVYV-DTTSSHPALAREIFKVARE----RDCWAVD-APVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEV 79 (220)
Q Consensus 6 gi~~~~~~g~~iv-d~ST~~p~~~~~la~~~~~----~G~~~ld-apV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~ 79 (220)
++.+.++++++++ ++||+++. ++++.+.. .|+||++ +|+++... +....+++++++++++++|+.
T Consensus 104 ~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~ve------i~~g~~t~~~~~~~~~~~~~~ 174 (292)
T PRK07530 104 QLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVE------LIRGIATDEATFEAAKEFVTK 174 (292)
T ss_pred HHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 3556678888887 88888775 46665532 3889999 66664431 222246899999999999999
Q ss_pred hcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHhc
Q 044696 80 LGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL-DVRKWRDAVKG 133 (220)
Q Consensus 80 ~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl-~~~~~~~~l~~ 133 (220)
+|+ ++++++.+ -|++|+++. ..+.|++.+.++ |+ +++++=.++..
T Consensus 175 ~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~-g~~~~~~iD~~~~~ 221 (292)
T PRK07530 175 LGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYE-GVGSVEAIDTAMKL 221 (292)
T ss_pred cCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHh-CCCCHHHHHHHHHh
Confidence 999 99998744 577787654 457788888777 54 67776656543
No 50
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.02 E-value=0.00016 Score=66.46 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=106.2
Q ss_pred HHhHHHHHHHHHHhcc---ceecCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 044696 67 SAVVQWLTPLFEVLGK---PTFMGGAGC------GQSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAV 131 (220)
Q Consensus 67 ~~~~~~~~~~l~~~~~---~~~~G~~G~------a~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l 131 (220)
.++++|..|.++..-. ..+.|+.+. ++.+|.+.|.+.++.+++++|++.+.++ .++|..++.+++
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 3577888888876542 344566543 8999999999999999999999999988 899999999999
Q ss_pred hccC-CChHHHHhhhhhhccc-cC-----CCCc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCC
Q 044696 132 KGGA-AGSMAMELYGERMIEK-DF-----RPGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGD 202 (220)
Q Consensus 132 ~~~~-~~s~~~~~~~~~~~~~-~~-----~~~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~ 202 (220)
+.+. -.|++++...+...++ +. ++.| .+......+|.++..+-+. |+|+|.+..+..+|+.....-
T Consensus 358 r~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~----gip~P~ls~aL~y~~~~~s~~- 432 (467)
T TIGR00873 358 RGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEY----GIPVPAFSAALSFYDGYRTAR- 432 (467)
T ss_pred CCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCc-
Confidence 9877 5788887765554332 11 1112 2334455568899999999 999999999999999876632
Q ss_pred CCCChHHHHHHHHHhcC
Q 044696 203 GKFGTQGLVSVIERING 219 (220)
Q Consensus 203 g~~d~~av~~~~~~~~~ 219 (220)
-...++...|+..|
T Consensus 433 ---~~~nliqaqRd~FG 446 (467)
T TIGR00873 433 ---LPANLLQAQRDYFG 446 (467)
T ss_pred ---ccHHHHHHHHHHhc
Confidence 22345555555443
No 51
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.00 E-value=0.00026 Score=59.85 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=76.6
Q ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhccceecCCCC
Q 044696 11 LNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGGAG 90 (220)
Q Consensus 11 ~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G~~G 90 (220)
..+|++||+++ .+-....+.+++......+.+.|.. +.+.....+.++.++ +.++++|+.+|..+++++.
T Consensus 83 ~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~---~~a~~~g~t~~~~~~----~~~~~l~~~lG~~~~~~~e- 152 (258)
T PRK06476 83 FRPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLP---FVAERKGVTAIYPPD----PFVAALFDALGTAVECDSE- 152 (258)
T ss_pred cCCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCC---hhhhCCCCeEecCCH----HHHHHHHHhcCCcEEECCh-
Confidence 35788888744 5666677777776555678899983 333444556677664 4789999999994446643
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 91 CGQSCKIANQI-----VVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 91 ~a~~~Kl~~n~-----~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
|..+++ +.+..+..+.++..++++.|+|+++..+++...
T Consensus 153 -----~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 153 -----EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred -----HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333444 455555677788899999999999999988754
No 52
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.89 E-value=3.2e-05 Score=66.59 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=80.4
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHh----cCCcEEE-ecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc-
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARE----RDCWAVD-APVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK- 82 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~ld-apV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~- 82 (220)
+.+.++++++ |+++.-...++++.+.. .|.||.+ +|+++... +..|+.+ ++++++++.++++.+|+
T Consensus 109 ~~~~~~~il~--S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~~g~~T-----~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 109 RNVSPETIIA--SNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VVRAALT-----SEETFNTTVELSKKIGKI 180 (291)
T ss_pred hhCCCCeEEE--EcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE-EeCCCCC-----CHHHHHHHHHHHHHcCCe
Confidence 4456677665 33333355567776654 3889998 88998865 3466655 88999999999999999
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 83 PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 83 ~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++++++.+.....|+++|++ .|++.+.+.--.+++++=.++..+
T Consensus 181 ~v~v~d~pgfv~nRl~~~~~--------~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 181 PIEVADVPGFFTTRFIEGWL--------LEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred EEEeCCCCCeeHHHHHHHHH--------HHHHHHHHcCCCCHHHHHHHHhhc
Confidence 99999988889999999854 588888766335687776666544
No 53
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.85 E-value=0.0011 Score=57.47 Aligned_cols=91 Identities=22% Similarity=0.337 Sum_probs=65.5
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCChH-Hhh-------ccceeEEe---cCCHHhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGDI-GAR-------DGKLAIFA---AGDSAVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~~-~a~-------~g~l~i~~---gG~~~~~~~~~ 74 (220)
+.+.++++.+|+|++++.+...+++.+.+. .+++|+.+ |+.|+.. +.+ .|...+++ +++++.++.++
T Consensus 86 l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~ 164 (307)
T PRK07502 86 IAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLT 164 (307)
T ss_pred HHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHH
Confidence 445678899999999999888887776553 57899998 9987542 222 23333343 67888999999
Q ss_pred HHHHHhcc-ceecCCCCHHHHHHHH
Q 044696 75 PLFEVLGK-PTFMGGAGCGQSCKIA 98 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~~G~a~~~Kl~ 98 (220)
++++.+|. ++++++..--..+=++
T Consensus 165 ~l~~~lG~~~~~~~~~~hD~~~A~~ 189 (307)
T PRK07502 165 AFWRALGARVEEMDPEHHDLVLAIT 189 (307)
T ss_pred HHHHHcCCEEEEcCHHHHhHHHHHH
Confidence 99999999 8888864333333333
No 54
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.82 E-value=0.00035 Score=64.01 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=105.0
Q ss_pred HHhHHHHHHHHHHhcc---ceecCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 044696 67 SAVVQWLTPLFEVLGK---PTFMGGAGC-----GQSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAVK 132 (220)
Q Consensus 67 ~~~~~~~~~~l~~~~~---~~~~G~~G~-----a~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l~ 132 (220)
.+++.|+.|.++..-. ..|.|+.+. ++.+|.+.|.+.++.+.+++|++.+.++ .++|..++.++.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4678888888887642 445676554 8999999999999999999999999887 6889999999999
Q ss_pred ccC-CChHHHHhhhhhhccc-cC-----CCCc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCC
Q 044696 133 GGA-AGSMAMELYGERMIEK-DF-----RPGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDG 203 (220)
Q Consensus 133 ~~~-~~s~~~~~~~~~~~~~-~~-----~~~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g 203 (220)
.+. -.|++++...+...++ +. ++.| .+.-....++.++..+-+. |+|+|.+..+..+|+.....-+
T Consensus 351 ~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~----gip~P~ls~aL~y~d~~~~~~~- 425 (459)
T PRK09287 351 GGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQA----GIPVPAFSSALSYYDSYRTARL- 425 (459)
T ss_pred CCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCCc-
Confidence 877 5788887655544331 11 1112 1333445568889999999 9999999999988887654422
Q ss_pred CCChHHHHHHHHHhcC
Q 044696 204 KFGTQGLVSVIERING 219 (220)
Q Consensus 204 ~~d~~av~~~~~~~~~ 219 (220)
...++...|+..|
T Consensus 426 ---~anliqaqRd~FG 438 (459)
T PRK09287 426 ---PANLIQAQRDYFG 438 (459)
T ss_pred ---cHHHHHHHHhHhC
Confidence 2345555555443
No 55
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.82 E-value=0.00014 Score=62.46 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---ccCCChHHHHhhhhhhccccCCCCchhhHHH----
Q 044696 92 GQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRKWRDAVK---GGAAGSMAMELYGERMIEKDFRPGGFAEYMV---- 163 (220)
Q Consensus 92 a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~---- 163 (220)
|+.+||++|-+-++.|++++|+..+.++ .|++.+++.+++. .+...|++++-...-+...|.+...-++...
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 6889999999999999999999999995 7999988877776 4566788888777766666533223233321
Q ss_pred -H-HHHHHHHHHhhcccCCCCCccHHHHH
Q 044696 164 -K-DMGMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 164 -K-D~~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
| .-+...+.+-+. |+|.|+...+
T Consensus 81 ~kGtG~Wt~~~a~~~----gvp~p~I~~a 105 (291)
T PF00393_consen 81 QKGTGKWTVQEALEL----GVPAPTIAAA 105 (291)
T ss_dssp -BSHHHHHHHHHHHH----T---HHHHHH
T ss_pred CCCccchHHHHHHHh----CCCccHHHHH
Confidence 1 136778889999 9999988776
No 56
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.67 E-value=0.00028 Score=60.75 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhc--CCcEEE-ecCCCChHHhhccceeEEecCCHHhHHHHHHHHH-Hhcc-ceec
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARER--DCWAVD-APVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE-VLGK-PTFM 86 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~--G~~~ld-apV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~-~~~~-~~~~ 86 (220)
+++++++..||+.|.+.........++ |.||.+ +|+++.+ ++....++++++++++.+++. .+++ ++++
T Consensus 112 ~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 112 DPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 689999999999898877766555666 899999 7888876 778888999999999999988 6999 9999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 87 GG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 87 G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++ +|. +.|- .....+.|++.+.+.--.+++++=.++..+
T Consensus 186 ~d~pGf------i~nR---i~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 186 QDRSGF------VVNA---LLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred cCCCCh------HHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 87 773 2232 234567788888877657788876666544
No 57
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.64 E-value=0.0022 Score=59.02 Aligned_cols=144 Identities=9% Similarity=0.082 Sum_probs=102.7
Q ss_pred HhHHHHHHHHHHhcc---ceecCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHH
Q 044696 68 AVVQWLTPLFEVLGK---PTFMGGA--------GCGQSCKIANQIVVGANLLGLSEGLVFADE----A--GLDVRKWRDA 130 (220)
Q Consensus 68 ~~~~~~~~~l~~~~~---~~~~G~~--------G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~----~--Gl~~~~~~~~ 130 (220)
.++.|..+.++..-. ..+.|+. +.++.+|.+.|.+.++.+.+++|++.+.++ + ++|..++.++
T Consensus 283 a~~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~i 362 (470)
T PTZ00142 283 SVDARNISALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARI 362 (470)
T ss_pred HHHHHHhhhhHHHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 567788888876542 3445653 678999999999999999999999998873 4 9999999999
Q ss_pred HhccC-CChHHHHhhhhhhcccc-C-----CCCc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCC
Q 044696 131 VKGGA-AGSMAMELYGERMIEKD-F-----RPGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 201 (220)
Q Consensus 131 l~~~~-~~s~~~~~~~~~~~~~~-~-----~~~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G 201 (220)
.+.+. -.|++++...+...++. . ++.| .+......++.++..+-+. |+|+|....+..+|+.....-
T Consensus 363 Wr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~----gip~P~~s~aL~y~~s~~~~~ 438 (470)
T PTZ00142 363 WRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKN----GIPTPAFSASLAYYQMYRSQN 438 (470)
T ss_pred hCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCC
Confidence 99877 56788876555443321 1 1112 1334445568889999999 999999999999777664432
Q ss_pred CCCCChHHHHHHHHHhcC
Q 044696 202 DGKFGTQGLVSVIERING 219 (220)
Q Consensus 202 ~g~~d~~av~~~~~~~~~ 219 (220)
+ ...++...|+..|
T Consensus 439 ~----~anliqaqRd~FG 452 (470)
T PTZ00142 439 L----PANLVQAQRDYFG 452 (470)
T ss_pred c----cHHHHHHHHHHhC
Confidence 2 2345555555443
No 58
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.60 E-value=0.0021 Score=57.09 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE-ecCCCCh-H-------HhhccceeEEec---CCHHhHHHHHHHHH
Q 044696 11 LNPGAVYVDTTSSHPALAREIFKVARERDCWAVD-APVSGGD-I-------GARDGKLAIFAA---GDSAVVQWLTPLFE 78 (220)
Q Consensus 11 ~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld-apV~g~~-~-------~a~~g~l~i~~g---G~~~~~~~~~~~l~ 78 (220)
++++.+|.|++++.....+++.+. ..++.+|+. .|+.|+. . ..-.+...+++. .+++.+++++++++
T Consensus 85 l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~ 163 (359)
T PRK06545 85 LKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLS 163 (359)
T ss_pred CCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999888887766 346789999 5998862 2 222444456665 47788999999999
Q ss_pred Hhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 044696 79 VLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKG 133 (220)
Q Consensus 79 ~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~ 133 (220)
.+|. ++++.+...-..+-++..+-. .+++++ +...+.+.+....+...
T Consensus 164 ~lGa~~v~~~~~~HD~~~A~vshlPh-----~ia~al--~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 164 GTGAKFVVLDAEEHDRAVALVSHLPH-----ILASSL--AARLAGEHPLALRLAAG 212 (359)
T ss_pred HcCCEEEECCHHHHhHHHhHhccHHH-----HHHHHH--HHhhccCchHHHhhhcc
Confidence 9999 888987555555555543332 222333 55666665555544443
No 59
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.54 E-value=0.012 Score=51.22 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=121.9
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCcEEEecCCCChHHhhccce--------eEEecCCHH-----hHHH
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVAR--ERDCWAVDAPVSGGDIGARDGKL--------AIFAAGDSA-----VVQW 72 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~--~~G~~~ldapV~g~~~~a~~g~l--------~i~~gG~~~-----~~~~ 72 (220)
.+.....+++++-||+....++.+..-+. ..|+.| -|...|.-...|+. -+++||++. +++.
T Consensus 114 a~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~f---qilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~ 190 (481)
T KOG2666|consen 114 ADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKF---QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQA 190 (481)
T ss_pred HHhccCCeEEEeeccccchHHHHHHHHHhcCCCCcee---EeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHH
Confidence 34455679999999999999999988875 356665 23334443333432 578999762 3344
Q ss_pred HHHHHHHhcc--ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhcc
Q 044696 73 LTPLFEVLGK--PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIE 150 (220)
Q Consensus 73 ~~~~l~~~~~--~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~ 150 (220)
...+.+.+-. -+..-..=++..-||+.|.+++--+..+.-.-++|+.-|-|..++.-.+.... +.+++.++
T Consensus 191 l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~-------rig~kfl~ 263 (481)
T KOG2666|consen 191 LKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS-------RIGSKFLN 263 (481)
T ss_pred HHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc-------cccHHHhh
Confidence 4555555543 23333456899999999999999999999999999999999998887775432 22344443
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHC
Q 044696 151 KDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 200 (220)
Q Consensus 151 ~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~ 200 (220)
. +.+|.-+.++||+-..+=..+.+ ++| .+.++|+..++.
T Consensus 264 a--svgfggscfqkdilnlvyice~l----nlp-----eva~ywqqvi~~ 302 (481)
T KOG2666|consen 264 A--SVGFGGSCFQKDILNLVYICECL----NLP-----EVAEYWQQVIKI 302 (481)
T ss_pred c--ccCcCchhHHHHHHHHHHHHhcC----CCh-----HHHHHHHHHhhh
Confidence 2 35788899999998888888888 766 566777776664
No 60
>PRK07680 late competence protein ComER; Validated
Probab=97.48 E-value=0.0054 Score=52.22 Aligned_cols=120 Identities=11% Similarity=0.018 Sum_probs=76.9
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEec--CCHHhHHHHHHHHHHhccce
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA--GDSAVVQWLTPLFEVLGKPT 84 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~g--G~~~~~~~~~~~l~~~~~~~ 84 (220)
+.+.+.++++||+++..- ..+++.+++..+.++++. +.+..+..|...++.| .+.+.++.++++|+.+|..+
T Consensus 82 l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~ 155 (273)
T PRK07680 82 LAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPL 155 (273)
T ss_pred HHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEE
Confidence 445667889999998643 355666666544455554 3455677888777776 46678899999999999966
Q ss_pred ecCCC-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 85 FMGGA-GCGQ-SCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 85 ~~G~~-G~a~-~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++.+. -.+. .+=-+.-.+.+..+.++.++. .++.|++.++..+++...
T Consensus 156 ~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 156 VIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred EEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 67652 2221 111122234444555555543 244899999988887654
No 61
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.22 E-value=0.031 Score=48.85 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=65.2
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHH---HHhcCCc---EEEecCCCChHHhhccceeEEecC--------CHHhH
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKV---ARERDCW---AVDAPVSGGDIGARDGKLAIFAAG--------DSAVV 70 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~---~~~~G~~---~ldapV~g~~~~a~~g~l~i~~gG--------~~~~~ 70 (220)
+|+++++++|++||||||++|+..+++-+. +.++.+. |==+.|-|.+. -...+..|. +++..
T Consensus 100 ~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~----~~~~~~~~~~~~~~~~A~ee~i 175 (341)
T TIGR01724 100 RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQ----HGHYVIGGKPTAGKEMATEEQI 175 (341)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCC----CceeeeccccccccccCCHHHH
Confidence 368889999999999999999999888766 2223221 22223333332 222332222 35677
Q ss_pred HHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCH
Q 044696 71 QWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFA-DEAGLDV 124 (220)
Q Consensus 71 ~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la-~~~Gl~~ 124 (220)
+++-++.+..++ .|.+=..=.+....|+. .+.+..++++.+-...+ +-.|.+.
T Consensus 176 ~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s-~vta~~~~gil~y~~~~t~i~~ap~ 230 (341)
T TIGR01724 176 SKCVELAKSTGKKAYVVPADVTSAVADMGS-LVTAVALAGVLDYYYVGTQIINAPK 230 (341)
T ss_pred HHHHHHHHHhCCCeeecchhhcchhhhHHH-HHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 888888888888 55543222233333332 34444555555444444 2344443
No 62
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.19 E-value=0.026 Score=47.64 Aligned_cols=170 Identities=12% Similarity=0.024 Sum_probs=98.5
Q ss_pred CCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecC--CHHhHHHHHHHHHHhccceecC-CC-
Q 044696 14 GAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMG-GA- 89 (220)
Q Consensus 14 g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG--~~~~~~~~~~~l~~~~~~~~~G-~~- 89 (220)
+++||.++...+.. .+.+++ .++.+++.+ +...|.....+...++.+. +++.++.++.+|+.+|.++++. +.
T Consensus 87 ~~~vvs~~~gi~~~--~l~~~~-~~~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~ 162 (267)
T PRK11880 87 DKLVVSIAAGVTLA--RLERLL-GADLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQ 162 (267)
T ss_pred CCEEEEecCCCCHH--HHHHhc-CCCCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEECChHh
Confidence 46777666655432 344443 245677763 4455666666655556554 7888999999999999955666 32
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhccCCChHHHHhhhhhhcc-ccCCCCc--hhhHHHH
Q 044696 90 -GCGQSCKIANQIVVGANLLGLSEGLVF-ADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIE-KDFRPGG--FAEYMVK 164 (220)
Q Consensus 90 -G~a~~~Kl~~n~~~~~~~~~~aEa~~l-a~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~f--~~~~~~K 164 (220)
-.+..+ +.+ .-..+..+.|++.- +.+.|+++++..+++.... ......+.+ +++.... .+..--.
T Consensus 163 ~d~~~a~--~~~--~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~------~g~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 163 MDAVTAV--SGS--GPAYVFLFIEALADAGVKLGLPREQARKLAAQTV------LGAAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred cchHHHH--hcC--hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH------HHHHHHHHhcCCCHHHHHHhCCCCcH
Confidence 222212 111 11223345566554 5779999999888887542 111111111 1110000 0111111
Q ss_pred HHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCC
Q 044696 165 DMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 201 (220)
Q Consensus 165 D~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G 201 (220)
=....++..++. |++-.+.+++.+.++++.+.+
T Consensus 233 ~t~~gl~~l~~~----g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 233 TTIAALRVLEEK----GLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHhc
Confidence 135566777888 999999999999999998864
No 63
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.70 E-value=0.093 Score=44.98 Aligned_cols=174 Identities=11% Similarity=-0.001 Sum_probs=93.8
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHhc----CCcEEEecCCCChHHhhccceeEEecCC----HHhHHHHHHHHHHh
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARER----DCWAVDAPVSGGDIGARDGKLAIFAAGD----SAVVQWLTPLFEVL 80 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~~----G~~~ldapV~g~~~~a~~g~l~i~~gG~----~~~~~~~~~~l~~~ 80 (220)
+.+.++++||.+... ......+.+.+.+. |+.++.+++.++-.--..+.-.+.+|.. .+..+++..+|...
T Consensus 90 ~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~ 168 (305)
T PRK12921 90 PLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGA 168 (305)
T ss_pred hhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhC
Confidence 345566776655432 22233444444322 4455666654421111112223455542 23445566666665
Q ss_pred cc-ceecCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCHH--HHHHHHhc---
Q 044696 81 GK-PTFMGGAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFADEAGLDVR--KWRDAVKG--- 133 (220)
Q Consensus 81 ~~-~~~~G~~G~a~~~Kl~~n~~~~---------------------~~~~~~aEa~~la~~~Gl~~~--~~~~~l~~--- 133 (220)
+- +....+.-...-.|++.|..+. .....+.|...++++.|+++. .+.+.+..
T Consensus 169 g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~ 248 (305)
T PRK12921 169 RLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVKIFAG 248 (305)
T ss_pred CCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Confidence 54 4444557778899999886542 234568899999999998743 33232221
Q ss_pred c-C-CChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHH
Q 044696 134 G-A-AGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 197 (220)
Q Consensus 134 ~-~-~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a 197 (220)
. . ..+.+++ .+.++.. .-++.. ...+++.+++. |+++|..+...++++..
T Consensus 249 ~~~~~~sSm~~----D~~~gr~---tEid~i---~G~vv~~a~~~----gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 249 APGDMKTSMLR----DMEKGRP---LEIDHL---QGVLLRRARAH----GIPTPILDTVYALLKAY 300 (305)
T ss_pred cCCCCCcHHHH----HHHcCCc---ccHHHH---HHHHHHHHHHh----CCCCcHHHHHHHHHHHH
Confidence 0 0 1111111 1111211 122222 24689999999 99999999998887654
No 64
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.51 E-value=0.022 Score=48.67 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=73.0
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHH----hcCCcEEE-ecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVAR----ERDCWAVD-APVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~----~~G~~~ld-apV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
+.+.+++++++ .++|+++..+ ++++.+. -.|++|.+ ++++.+.. +..| -+.+++.+++++++|+.+|
T Consensus 104 l~~~~~~~~il-~s~ts~~~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g-----~~t~~e~~~~~~~l~~~lG 175 (282)
T PRK05808 104 LDEIAKPEAIL-ATNTSSLSIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG-----LATSDATHEAVEALAKKIG 175 (282)
T ss_pred HHhhCCCCcEE-EECCCCCCHH-HHHHhhCCCcceEEeeccCCcccCccEE-EeCC-----CCCCHHHHHHHHHHHHHcC
Confidence 33456666655 5666666555 6666663 24677777 56665553 2222 4668899999999999999
Q ss_pred c-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 82 K-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 82 ~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
+ ++++++ +|. +.|- .....+.|++.+.+.--.+++++=..+..+
T Consensus 176 k~pv~~~d~~g~------i~~R---i~~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 176 KTPVEVKNAPGF------VVNR---ILIPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred CeeEEecCccCh------HHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9 999986 652 2232 334567788888877556777765555543
No 65
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.09 E-value=0.56 Score=39.63 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=56.6
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCC--------hHHhhccceeEEecCC---HHhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGG--------DIGARDGKLAIFAAGD---SAVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~--------~~~a~~g~l~i~~gG~---~~~~~~~~ 74 (220)
+.+.+++|.+|+|.+++--...+.+.+... .+++||-+ |+.|. ...--.|...+++-++ .+.++.++
T Consensus 65 ~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~ 143 (258)
T PF02153_consen 65 IAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVE 143 (258)
T ss_dssp HHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHH
T ss_pred hhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHH
Confidence 445678999999999999988888877665 67888877 77776 2333357778888443 46889999
Q ss_pred HHHHHhcc-ceecCC
Q 044696 75 PLFEVLGK-PTFMGG 88 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~ 88 (220)
.+++.+|. ++++-.
T Consensus 144 ~l~~~~Ga~~~~~~~ 158 (258)
T PF02153_consen 144 ELWEALGARVVEMDA 158 (258)
T ss_dssp HHHHHCT-EEEE--H
T ss_pred HHHHHCCCEEEEcCH
Confidence 99999999 888753
No 66
>PLN02712 arogenate dehydrogenase
Probab=95.95 E-value=0.092 Score=50.52 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=53.7
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEE-EecCCCChHHhhcc--cee-----EEecCCHHhHHHHH---HHHH
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAV-DAPVSGGDIGARDG--KLA-----IFAAGDSAVVQWLT---PLFE 78 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~l-dapV~g~~~~a~~g--~l~-----i~~gG~~~~~~~~~---~~l~ 78 (220)
.+++|++++|++|+. ....+..+.+...|++|+ ..|+.|.... ..| .+. .+++++.+.+++++ .+++
T Consensus 449 ~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~ 526 (667)
T PLN02712 449 RLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFA 526 (667)
T ss_pred cCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHH
Confidence 467899999999998 444444445555688898 9999998754 122 122 45677776666655 7788
Q ss_pred Hhcc-ceecCC
Q 044696 79 VLGK-PTFMGG 88 (220)
Q Consensus 79 ~~~~-~~~~G~ 88 (220)
.+|. ++.+.+
T Consensus 527 ~lGa~vv~ms~ 537 (667)
T PLN02712 527 REGCRMVEMSC 537 (667)
T ss_pred HcCCEEEEeCH
Confidence 8888 888875
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.45 E-value=0.15 Score=43.64 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=70.2
Q ss_pred hhhcCCCCCEE-EecCCCCHHHHHHHHHHHHh-cCCcEEEecCCCChHHhhccceeEEe---cCCHHhHHHHHHHHHHhc
Q 044696 7 IVSALNPGAVY-VDTTSSHPALAREIFKVARE-RDCWAVDAPVSGGDIGARDGKLAIFA---AGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 7 i~~~~~~g~~i-vd~ST~~p~~~~~la~~~~~-~G~~~ldapV~g~~~~a~~g~l~i~~---gG~~~~~~~~~~~l~~~~ 81 (220)
+.+.+++++++ .++||.++....+..+.-.+ .|.||.+.| . ...+..++ ..++++++++..+++.+|
T Consensus 106 l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~-~-------~~~lvevv~~~~t~~~~~~~~~~~~~~~G 177 (287)
T PRK08293 106 LAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEI-W-------KNNTAEIMGHPGTDPEVFDTVVAFAKAIG 177 (287)
T ss_pred HHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCC-C-------cCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 34456677777 58888888654443211111 234442221 1 23445555 557789999999999999
Q ss_pred c-ceecC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 82 K-PTFMG-G-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 82 ~-~~~~G-~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
+ ++.+. + +|. +.|= .....+.|++.+.+.--.+++++=.++..+.
T Consensus 178 k~pv~v~~d~pgf------i~nR---i~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 178 MVPIVLKKEQPGY------ILNS---LLVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred CeEEEecCCCCCH------hHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 9 88886 4 663 1222 2344678999998886678988866665543
No 68
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.32 E-value=0.47 Score=44.08 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhccC-CChHHHHhhhhhhccc-cC-----CCCc-
Q 044696 92 GQSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAVKGGA-AGSMAMELYGERMIEK-DF-----RPGG- 157 (220)
Q Consensus 92 a~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~-----~~~f- 157 (220)
....+-+.+.+..+.+.+++|++.+.++ +++|..++.++++.+. -.|++++...+...++ +. ++.|
T Consensus 327 ~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 406 (493)
T PLN02350 327 KQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFA 406 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 4666778899999999999999999884 5899999999999877 5788887665544332 11 1112
Q ss_pred -hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcC
Q 044696 158 -FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERING 219 (220)
Q Consensus 158 -~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~~~ 219 (220)
.+.......+.++..+-+. |+|.|.+..+..+|+.....- -...++...|+..|
T Consensus 407 ~~~~~~~~~~r~~V~~a~~~----gip~P~ls~aL~y~~s~~~~~----~~~nliqaqRd~FG 461 (493)
T PLN02350 407 KEMVERQAAWRRVVSLAINA----GISTPGMSASLAYFDTYRRAR----LPANLVQAQRDYFG 461 (493)
T ss_pred HHHHHhhhHHHHHHHHHHHc----CCCHHHHHHHHHHHHhhccCC----ccHHHHHHHHHHhC
Confidence 2334556678899999999 999999999999777654432 22345555555443
No 69
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=95.31 E-value=0.35 Score=41.79 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhccC-CChHHHHhhhhhhccc-cC-----C
Q 044696 88 GAGCGQSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAVKGGA-AGSMAMELYGERMIEK-DF-----R 154 (220)
Q Consensus 88 ~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~-----~ 154 (220)
........+-+.+.+.++.+.++++++.+-++ .+++..++..+.+.+. -.|.+++...+...++ +. +
T Consensus 135 ~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~ 214 (291)
T PF00393_consen 135 KEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLD 214 (291)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccC
Confidence 35667888999999999999999999988865 6899999999999876 5677776655433322 11 1
Q ss_pred CCc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHh
Q 044696 155 PGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLVSVIERI 217 (220)
Q Consensus 155 ~~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~~~~ 217 (220)
|.| .+.....+++.++..+-+. |+|.|.+.++.++|+.....-. .+.++...|+-
T Consensus 215 ~~f~~~l~~~~~~lR~vV~~ai~~----gipvPalsaaL~Y~ds~~~~~l----panlIQAqRDy 271 (291)
T PF00393_consen 215 PYFAEELKDNQPSLRRVVSLAIEA----GIPVPALSAALSYFDSYRSERL----PANLIQAQRDY 271 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----T---HHHHHHHHHHHHHTTSSH----THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcccCCC----cHHHHHHHHHH
Confidence 223 2445567789999999999 9999999999999886644322 24455555544
No 70
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=95.17 E-value=0.52 Score=35.90 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=65.4
Q ss_pred eEEecCCHHhHHHHHHHHHHhcc-ceecCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 60 AIFAAGDSAVVQWLTPLFEVLGK-PTFMGGAGCGQ---SCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 60 ~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~G~a~---~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
++.+-|+++..+..+.+++.+|. ++.+-+..... +.=+++|++. ..+..+..+.++.|+|.+..++++.
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~----~L~~~a~~ll~~~gi~~~~a~~~L~--- 75 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLV----ALYALAAELLEQAGIDFEEALEALL--- 75 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT-SHHH--HHHH---
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHcCCCchhHHHHHH---
Confidence 45566699999999999999999 88886544331 1223455443 4566678899999999977666664
Q ss_pred CChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhc
Q 044696 136 AGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEES 176 (220)
Q Consensus 136 ~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~ 176 (220)
|+++.....+.+.......|-...+.|...+....+.+
T Consensus 76 ---PLi~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L 113 (132)
T PF10728_consen 76 ---PLIRETLENILQLGPADALTGPAARGDIGTVAKHLAAL 113 (132)
T ss_dssp ---HHHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHH
Confidence 45555555554433211334455677777777766666
No 71
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.97 E-value=0.12 Score=50.05 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=60.3
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcE-EEecCCCChH---Hhhc-----cceeEEe---cCCHHhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWA-VDAPVSGGDI---GARD-----GKLAIFA---AGDSAVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~-ldapV~g~~~---~a~~-----g~l~i~~---gG~~~~~~~~~ 74 (220)
+.+.++++.+|+|++++.+...+++.+.+....++| -..|+.|+.. .+.. +...+++ .++++.++.++
T Consensus 83 l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (735)
T PRK14806 83 LKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVD 162 (735)
T ss_pred HHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 344567889999999999988888887775556665 5789886643 1222 3333444 35677889999
Q ss_pred HHHHHhcc-ceecCCC
Q 044696 75 PLFEVLGK-PTFMGGA 89 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~~ 89 (220)
++|+.+|. ++++.+.
T Consensus 163 ~l~~~~G~~~~~~~~~ 178 (735)
T PRK14806 163 RLWRAVGADVLHMDVA 178 (735)
T ss_pred HHHHHcCCEEEEcCHH
Confidence 99999999 8888763
No 72
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.85 E-value=1.7 Score=37.78 Aligned_cols=130 Identities=14% Similarity=0.013 Sum_probs=70.3
Q ss_pred HHHHHHHhcc---ceecC-CCCHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHHHH-
Q 044696 73 LTPLFEVLGK---PTFMG-GAGCGQSCKIANQIVVGA-----------------NLLGLSEGLVFADEAGL--DVRKWR- 128 (220)
Q Consensus 73 ~~~~l~~~~~---~~~~G-~~G~a~~~Kl~~n~~~~~-----------------~~~~~aEa~~la~~~Gl--~~~~~~- 128 (220)
.+.+.+.|.. ..++. ++-.....|++.|.+... ...++.|+..++++.|. ++++++
T Consensus 160 ~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~g 239 (326)
T PRK14620 160 GSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIG 239 (326)
T ss_pred HHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc
Confidence 3445555543 33334 355567777777764322 35678899999999987 788874
Q ss_pred -----HHHhccC-CCh--HHHHhhh--hhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHH
Q 044696 129 -----DAVKGGA-AGS--MAMELYG--ERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 198 (220)
Q Consensus 129 -----~~l~~~~-~~s--~~~~~~~--~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~ 198 (220)
|.+.... ..+ ..+-.+. ..+.++-....-+.-....-+..+.+.+++. |+++|+.+.+.++.
T Consensus 240 l~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~----~i~~P~~~~l~~~~---- 311 (326)
T PRK14620 240 PSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKL----NIELPICESIYNLL---- 311 (326)
T ss_pred cchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH----
Confidence 5654322 111 1111000 0111000000000011223346788899999 99999999888775
Q ss_pred HCCCCCCChHHHHHH
Q 044696 199 ANGDGKFGTQGLVSV 213 (220)
Q Consensus 199 ~~G~g~~d~~av~~~ 213 (220)
+++.+...+++.
T Consensus 312 ---~~~~~~~~~~~~ 323 (326)
T PRK14620 312 ---YENISLEKTISV 323 (326)
T ss_pred ---hCCCCHHHHHHH
Confidence 355565555443
No 73
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.66 E-value=2.6 Score=36.28 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=61.9
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCC--hHHhhccceeEEecCC---HHhHHHHHHHHHHhc
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGG--DIGARDGKLAIFAAGD---SAVVQWLTPLFEVLG 81 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~--~~~a~~g~l~i~~gG~---~~~~~~~~~~l~~~~ 81 (220)
.+++++|.+|.|.+++--.-.+.+.+...+.. +||-+ |+.|+ ...--.++..++.=++ .+.+++++.+++.+|
T Consensus 85 ~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~g 163 (279)
T COG0287 85 APHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALG 163 (279)
T ss_pred cccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 44688999999999999888888777776555 88887 89998 4454456667776543 457888999999999
Q ss_pred c-ceecCC
Q 044696 82 K-PTFMGG 88 (220)
Q Consensus 82 ~-~~~~G~ 88 (220)
. ++++-+
T Consensus 164 a~~v~~~~ 171 (279)
T COG0287 164 ARLVEMDA 171 (279)
T ss_pred CEEEEcCh
Confidence 8 888875
No 74
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.99 E-value=1.3 Score=39.08 Aligned_cols=148 Identities=14% Similarity=0.046 Sum_probs=82.8
Q ss_pred cccee--EEecCCHHhHHHHHHHHHHhccceecC-CCCHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 044696 56 DGKLA--IFAAGDSAVVQWLTPLFEVLGKPTFMG-GAGCGQSCKIANQIVV-----------------GANLLGLSEGLV 115 (220)
Q Consensus 56 ~g~l~--i~~gG~~~~~~~~~~~l~~~~~~~~~G-~~G~a~~~Kl~~n~~~-----------------~~~~~~~aEa~~ 115 (220)
.|..+ ++.+-+++..+.++.+|..-+-..|.. ++-.-...|.+-|.+. .....++.|+..
T Consensus 149 ~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~ 228 (341)
T PRK12439 149 EGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTK 228 (341)
T ss_pred cCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 35543 333345555566666665433223333 4444556666655443 344567889999
Q ss_pred HHHHcCCCHHHHHHHHhccCC----ChHHHHh--hhhhhccccCCCCc-----hhhHHHHHHHHHHHHHhhcccCCCCCc
Q 044696 116 FADEAGLDVRKWRDAVKGGAA----GSMAMEL--YGERMIEKDFRPGG-----FAEYMVKDMGMGVDVVEESEDERVVVL 184 (220)
Q Consensus 116 la~~~Gl~~~~~~~~l~~~~~----~s~~~~~--~~~~~~~~~~~~~f-----~~~~~~KD~~~~~~~a~~~~~~~g~~~ 184 (220)
++++.|.++++++..-.-+.. .|..-++ .+..+.+|..-... .+-.-.+-.+.+.+.+++. ++++
T Consensus 229 ~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~----~~~~ 304 (341)
T PRK12439 229 LGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEY----GLNM 304 (341)
T ss_pred HHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHh----CCCC
Confidence 999999999988654321110 0100111 12233332110000 1122345567778889999 9999
Q ss_pred cHHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 044696 185 PGAALGKQLFSAMVANGDGKFGTQGLVSVI 214 (220)
Q Consensus 185 p~~~~~~~~~~~a~~~G~g~~d~~av~~~~ 214 (220)
|+...+.+++ +++.|...+++.+
T Consensus 305 Pi~~~~~~il-------~~~~~~~~~~~~l 327 (341)
T PRK12439 305 PIAREVDAVI-------NHGSTVEQAYRGL 327 (341)
T ss_pred CHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 9999998886 4666777665544
No 75
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.93 E-value=3.4 Score=34.83 Aligned_cols=173 Identities=12% Similarity=0.033 Sum_probs=97.9
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhccce
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGKPT 84 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~~~~ 84 (220)
.+.+.++.+|-+++.++++..+++- . .....+ --+.+.|.....|. ++++.+ +++..+.++.+|+.+|.++
T Consensus 78 ~~~l~~~~iIS~~aGi~~~~l~~~~---~-~~~~vv-r~mPn~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~~~ 151 (260)
T PTZ00431 78 KPYLGSKLLISICGGLNLKTLEEMV---G-VEAKIV-RVMPNTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGIIQ 151 (260)
T ss_pred HhhccCCEEEEEeCCccHHHHHHHc---C-CCCeEE-EECCCchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCcEE
Confidence 3445556788899999988877553 1 111122 23344555555555 444443 4456789999999999966
Q ss_pred ecCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC-CChHHHHhh--hh-hhccccCCCCch
Q 044696 85 FMGG--AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA-AGSMAMELY--GE-RMIEKDFRPGGF 158 (220)
Q Consensus 85 ~~G~--~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~-~~s~~~~~~--~~-~~~~~~~~~~f~ 158 (220)
++-+ .-....+==+.-.+++..+.++. ..+.+.|++.++..+++.... +...++... -| .+.+.--+|+-+
T Consensus 152 ~v~E~~~d~~ta~~gsgPA~~~~~~~al~---~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~ 228 (260)
T PTZ00431 152 EIKEKDMDIATAISGCGPAYVFLFIESLI---DAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGI 228 (260)
T ss_pred EEChHHcchhhhhcCCHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChH
Confidence 6754 23333332222333333344443 356788999999998887654 222333221 22 223322244322
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHC
Q 044696 159 AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 200 (220)
Q Consensus 159 ~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~ 200 (220)
. ...++..++. |+.--+.+++..-++++.+.
T Consensus 229 T-------~~gl~~le~~----g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 229 T-------IVGLYTLEKH----AFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred H-------HHHHHHHHHC----ChHHHHHHHHHHHHHHHHhc
Confidence 1 2234455666 77777777777777776654
No 76
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.05 E-value=2.6 Score=35.89 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCH--H
Q 044696 70 VQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFADEAGLDV--R 125 (220)
Q Consensus 70 ~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~---------------------~~~~~~aEa~~la~~~Gl~~--~ 125 (220)
.+.+..+|...+. +...-+.-...-.|++.|..+. .....+.|...++++.|+++ +
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 4556666766555 4333346778888888775332 23355789999999998764 3
Q ss_pred HHHHHHhcc----C-CChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHH
Q 044696 126 KWRDAVKGG----A-AGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 198 (220)
Q Consensus 126 ~~~~~l~~~----~-~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~ 198 (220)
.+.+.+... . ..+.+++ .+..+... -++.. ...+++.+++. |+|+|..+...++.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~sSm~~----D~~~gr~t---Eid~i---~G~~v~~a~~~----gv~~P~~~~l~~~~~~~~ 298 (304)
T PRK06522 235 EVREYVRQVIQKTAANTSSMLQ----DLEAGRPT---EIDAI---VGYVLRRGRKH----GIPTPLNDALYGLLKAKE 298 (304)
T ss_pred HHHHHHHHHhhccCCCCchHHH----HHHcCCCc---ccchh---ccHHHHHHHHc----CCCCcHHHHHHHHHHHHH
Confidence 333332211 0 0111111 11122211 12222 34578999999 999999988887776543
No 77
>PF09130 DUF1932: Domain of unknown function (DUF1932); InterPro: IPR015814 This domain has been found in a number of eukaryotic and prokaryotic proteins, some of which are predicted to be 6-phosphogluconate dehydrogenase, NAD-binding proteins.; PDB: 3QSG_A 1I36_A 4EZB_A.
Probab=91.73 E-value=0.41 Score=32.49 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHcCCCHHHHHHHHhccCCC-h-HHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHH
Q 044696 117 ADEAGLDVRKWRDAVKGGAAG-S-MAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLF 194 (220)
Q Consensus 117 a~~~Gl~~~~~~~~l~~~~~~-s-~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~ 194 (220)
|+++|+.. .+++.|..+... . .......+.+..+.+ -....|+.+.++..+. |++..+..++.+.|
T Consensus 1 A~~~Gv~~-~ll~sl~~s~p~~~~~~~~~~v~~~~~hA~-------Rr~~EM~Eia~tl~~~----g~~~~m~~a~a~~~ 68 (73)
T PF09130_consen 1 ARRYGVED-ELLASLAESFPGLDWALAERLVPRMAPHAY-------RRAAEMEEIADTLAEL----GLPPEMFRAAAEVL 68 (73)
T ss_dssp HHHTT-HH-HHHHHHHHHSCCSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCT----T---HHHHHHHHHH
T ss_pred CcccccHH-HHHHHHHHHCCcchHHHHHHHcccchhhHH-------HHHHHHHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 57899995 566777655432 2 234444554443322 3577889999999999 99999999999999
Q ss_pred HHH
Q 044696 195 SAM 197 (220)
Q Consensus 195 ~~a 197 (220)
+..
T Consensus 69 ~~~ 71 (73)
T PF09130_consen 69 RRV 71 (73)
T ss_dssp HHC
T ss_pred HHh
Confidence 864
No 78
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.47 E-value=0.16 Score=38.85 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=28.8
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
.++++++++|+||+.+.+ ++.++++++|++|+++
T Consensus 105 ~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 105 LLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred HcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 357899999999996655 8999999999988875
No 79
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.32 E-value=9 Score=33.13 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCH-
Q 044696 68 AVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFADEAGLDV- 124 (220)
Q Consensus 68 ~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~---------------------~~~~~~aEa~~la~~~Gl~~- 124 (220)
+..+++..+|+.-+- +....+.-...-.|++.|..+. .....+.|+..++++.|++.
T Consensus 165 ~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~ 244 (313)
T PRK06249 165 ARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLP 244 (313)
T ss_pred HHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 455566677777665 5555667888888988775432 23345789999999999873
Q ss_pred ----HHHHHHHhccCCChHHHHhhhhhhccccCCCC--chhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHH
Q 044696 125 ----RKWRDAVKGGAAGSMAMELYGERMIEKDFRPG--GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 197 (220)
Q Consensus 125 ----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a 197 (220)
+.++++....+.. .+.|.. |+..+ .-++.. ...+++.+++. |+++|..+...++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~-------~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~----Gi~~P~~~~l~~~l~~~ 308 (313)
T PRK06249 245 EGYADHMLAVTERMPDY-------RPSMYH-DFEEGRPLELEAI---YANPLAAARAA----GCAMPRVEMLYQALEFL 308 (313)
T ss_pred hhHHHHHHHHhhcCCCC-------CChHHH-HHHCCCcccHHHH---hhHHHHHHHHh----CCCCcHHHHHHHHHHHH
Confidence 2233333222211 111111 11111 123333 46788999999 99999999988776644
No 80
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.18 E-value=0.49 Score=38.08 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=40.9
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHH-HHHHhcC-----CcEEEecC--CCChHHhhccce-eEEecCCHHhHH-HHHH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIF-KVARERD-----CWAVDAPV--SGGDIGARDGKL-AIFAAGDSAVVQ-WLTP 75 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la-~~~~~~G-----~~~ldapV--~g~~~~a~~g~l-~i~~gG~~~~~~-~~~~ 75 (220)
.|.++++++++||.-||+.|.+++++. ..+++.+ ..+.-+|- .-|....+--+. -++.|.+++.-+ +++.
T Consensus 105 ~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 105 SIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp HHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 456778899999999999999999655 4444444 36788883 333333333333 444555554333 4443
No 81
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=90.32 E-value=5.3 Score=34.16 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=83.9
Q ss_pred CCChHHhhccceeEEecC--CHHhHHHHHHHHHHhccceecCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Q 044696 48 SGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGGA--GCGQSCKIANQIVVGANLLGLSEGLV-FADEAGL 122 (220)
Q Consensus 48 ~g~~~~a~~g~l~i~~gG--~~~~~~~~~~~l~~~~~~~~~G~~--G~a~~~Kl~~n~~~~~~~~~~aEa~~-la~~~Gl 122 (220)
--.|..+..|...+..+- +++..+.+..+|+++|.++++.+. -..+.+ .. ..=..+..+.|++. .+.+.|+
T Consensus 117 PNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~Tai--sG--SgPAyv~~~iEal~~agv~~Gl 192 (266)
T COG0345 117 PNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTAL--SG--SGPAYVFLFIEALADAGVRLGL 192 (266)
T ss_pred CChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHH--hc--CCHHHHHHHHHHHHHHHHHcCC
Confidence 345677777776666543 566777899999999997778753 222222 11 11122344566664 4688999
Q ss_pred CHHHHHHHHhccC-CChHHHHhhh--hhhccccC-CCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHH
Q 044696 123 DVRKWRDAVKGGA-AGSMAMELYG--ERMIEKDF-RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 198 (220)
Q Consensus 123 ~~~~~~~~l~~~~-~~s~~~~~~~--~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~ 198 (220)
+.++.+++..... +...++.... |..+.++. +|+-+.--..++ .++. |+.--+.+++...++++.
T Consensus 193 ~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~~-------le~~----g~~~~v~~av~aa~~r~~ 261 (266)
T COG0345 193 PREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLRV-------LEED----GFRGAVIEAVEAAYKRSE 261 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHHH-------HHHh----ChHHHHHHHHHHHHHHHH
Confidence 9999999887654 3333443332 33333333 454433333333 3366 777778888888888777
Q ss_pred HCC
Q 044696 199 ANG 201 (220)
Q Consensus 199 ~~G 201 (220)
+.|
T Consensus 262 el~ 264 (266)
T COG0345 262 ELG 264 (266)
T ss_pred Hhc
Confidence 654
No 82
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=89.28 E-value=1.6 Score=33.17 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=40.4
Q ss_pred CCEEEecCCC-----CHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc--ceec
Q 044696 14 GAVYVDTTSS-----HPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--PTFM 86 (220)
Q Consensus 14 g~~ivd~ST~-----~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--~~~~ 86 (220)
=++|||+=+. .|. ...+.+++...|+.|+..||... .+ +++..+....+|+..-+ .+||
T Consensus 28 iktVIdlR~~~E~~~~p~-~~~~~~~a~~~gl~y~~iPv~~~-------~~------~~~~v~~f~~~~~~~~~pvL~HC 93 (135)
T TIGR01244 28 FKTVINNRPDREEESQPD-FAQIKAAAEAAGVTYHHQPVTAG-------DI------TPDDVETFRAAIGAAEGPVLAYC 93 (135)
T ss_pred CcEEEECCCCCCCCCCCC-HHHHHHHHHHCCCeEEEeecCCC-------CC------CHHHHHHHHHHHHhCCCCEEEEc
Confidence 4788988653 232 22334566778999999999852 11 55667788888886554 7888
Q ss_pred C
Q 044696 87 G 87 (220)
Q Consensus 87 G 87 (220)
-
T Consensus 94 ~ 94 (135)
T TIGR01244 94 R 94 (135)
T ss_pred C
Confidence 3
No 83
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.43 E-value=13 Score=30.63 Aligned_cols=81 Identities=9% Similarity=-0.064 Sum_probs=48.7
Q ss_pred hHHhhccceeEEe--cCCHHhHHHHHHHHHHhccceecCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 044696 51 DIGARDGKLAIFA--AGDSAVVQWLTPLFEVLGKPTFMGG--AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRK 126 (220)
Q Consensus 51 ~~~a~~g~l~i~~--gG~~~~~~~~~~~l~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~ 126 (220)
+.....|...+.+ .++++..+.++.+|+.+|.++++-+ .-..+++=-++-.+++..+.++.+ .+.+.|+++++
T Consensus 125 a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~---~~~~~Gl~~~~ 201 (245)
T PRK07634 125 AAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIE---ATKSYGVDEET 201 (245)
T ss_pred HHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHH---HHHHcCCCHHH
Confidence 3455556434433 3567788999999999999445653 222222222222233333444443 47889999999
Q ss_pred HHHHHhcc
Q 044696 127 WRDAVKGG 134 (220)
Q Consensus 127 ~~~~l~~~ 134 (220)
-.+++...
T Consensus 202 a~~~~~~~ 209 (245)
T PRK07634 202 AKHLVIQM 209 (245)
T ss_pred HHHHHHHH
Confidence 88887653
No 84
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=88.30 E-value=26 Score=33.94 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=61.4
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCChH-Hh-------hccceeEEec---CCHHhHHHHH
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGDI-GA-------RDGKLAIFAA---GDSAVVQWLT 74 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~~-~a-------~~g~l~i~~g---G~~~~~~~~~ 74 (220)
+.+.++++++|.|.+++--.-.+++.+.+.....+||-+ |+.|... +. =+|...+++= .+.+++++++
T Consensus 17 ~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~ 96 (673)
T PRK11861 17 IAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPENAPDALARVE 96 (673)
T ss_pred HhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCCCHHHHHHHH
Confidence 456788999999999999888887776655433568877 7776532 21 2566677773 3567889999
Q ss_pred HHHHHhcc-ceecCCC
Q 044696 75 PLFEVLGK-PTFMGGA 89 (220)
Q Consensus 75 ~~l~~~~~-~~~~G~~ 89 (220)
.+++.+|. ++.+.+.
T Consensus 97 ~l~~~~Ga~~~~~~~~ 112 (673)
T PRK11861 97 AMWRAARADVRAMSAE 112 (673)
T ss_pred HHHHHcCCEEEECCHH
Confidence 99999999 8888763
No 85
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.78 E-value=20 Score=32.13 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=54.6
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCCh-HHhhccceeEEecCCH-HhHHHHHHHHHHhcc-cee
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGD-IGARDGKLAIFAAGDS-AVVQWLTPLFEVLGK-PTF 85 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~-~~a~~g~l~i~~gG~~-~~~~~~~~~l~~~~~-~~~ 85 (220)
.+++|++|.|.+++--.-.+.+ .+.+++||-. |+.|+. .+.-.+...+++-+.. +.++.++.+++.+|. ++.
T Consensus 77 ~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~ 152 (370)
T PRK08818 77 GRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVY 152 (370)
T ss_pred CCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3689999999999986665544 3446678877 888874 3333566677775543 346788999999999 888
Q ss_pred cCCC
Q 044696 86 MGGA 89 (220)
Q Consensus 86 ~G~~ 89 (220)
+-+.
T Consensus 153 ~~ae 156 (370)
T PRK08818 153 ATPE 156 (370)
T ss_pred cCHH
Confidence 8753
No 86
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=87.25 E-value=23 Score=32.24 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhccC-CChHHHHhhhhhhccc------cCCC
Q 044696 89 AGCGQSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAVKGGA-AGSMAMELYGERMIEK------DFRP 155 (220)
Q Consensus 89 ~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~------~~~~ 155 (220)
-.....+.-+.+.+.++-+.++++++.+.++ .+++..++..+++.+. -.|.+++.......+. -++|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 4566778888999999999999999988765 5788889999998876 4566665443322211 1123
Q ss_pred Cc--hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHC
Q 044696 156 GG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 200 (220)
Q Consensus 156 ~f--~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~ 200 (220)
-| -+....+++|-++..+-+. |+|+|....+..+|+.-...
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~----giP~P~~ssalsy~Dsyr~~ 435 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEA----GIPVPAFSSALSYYDSYRTA 435 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhhhc
Confidence 34 3666788899999999999 99999999999999876554
No 87
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.47 E-value=22 Score=31.21 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=74.3
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecC---CHHhHHHHHHHHHHhcc-
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGK- 82 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG---~~~~~~~~~~~l~~~~~- 82 (220)
+.+.++++. ||.+||++ -...++++.+... -+++=.=-...|... .|+=++.| ++++++++..+++.+|+
T Consensus 105 l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p-~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 105 ISRAAKPDA-IIASSTSG-LLPTDFYARATHP-ERCVVGHPFNPVYLL---PLVEVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred HHHhCCCCe-EEEECCCc-cCHHHHHHhcCCc-ccEEEEecCCccccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 445566665 88888884 3555666666432 233333222222211 34445555 45788999999999998
Q ss_pred ceecC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCC
Q 044696 83 PTFMG-G-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAG 137 (220)
Q Consensus 83 ~~~~G-~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~ 137 (220)
.+.+. + +|. +.|= .....+.|++.+.+.-..+++++=.++..+.+.
T Consensus 179 pV~v~kd~pGF------i~NR---l~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 179 PLHVRKEVPGF------IADR---LLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred eEecCCCCccH------HHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 88885 5 662 3333 334578899999999889999988887766543
No 88
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=85.66 E-value=20 Score=30.09 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCHHH-
Q 044696 70 VQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFADEAGLDVRK- 126 (220)
Q Consensus 70 ~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~---------------------~~~~~~aEa~~la~~~Gl~~~~- 126 (220)
.+++..+|..-+- +....+.-...-.|++.|..+. .....+.|.+.++++.|+++..
T Consensus 148 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 227 (293)
T TIGR00745 148 VEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDD 227 (293)
T ss_pred HHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 4455555655444 4444557778888888776322 2345588999999999976433
Q ss_pred -HHHHHhc----cCCC-hHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHH
Q 044696 127 -WRDAVKG----GAAG-SMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 196 (220)
Q Consensus 127 -~~~~l~~----~~~~-s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~ 196 (220)
+.+.+.. .+.. +.+++ .+.++.. .-++.+ ...+++.+++. |+|+|..+...+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~sSm~~----D~~~gr~---tEid~i---~G~~v~~a~~~----gv~~P~~~~l~~~~~~ 289 (293)
T TIGR00745 228 EVEELVRAVIRMTAENTSSMLQ----DLLRGRR---TEIDAI---NGAVVRLAEKL----GIDAPVNRTLYALLKA 289 (293)
T ss_pred HHHHHHHHHHhcCCCCCChHHH----HHHcCCc---chHHHh---ccHHHHHHHHc----CCCCChHHHHHHHHHH
Confidence 2222221 1100 11111 0111110 112222 35678889999 9999999988777654
No 89
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=85.54 E-value=20 Score=29.90 Aligned_cols=117 Identities=10% Similarity=0.027 Sum_probs=69.7
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecC--CHHhHHHHHHHHHHhccceecCC-
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGG- 88 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG--~~~~~~~~~~~l~~~~~~~~~G~- 88 (220)
.++++||.++..-+-. ++.+.+. .+..++ --+-..+.....|...+..+. +++..+.++.+|+.+|.++++.+
T Consensus 68 ~~~~~ivS~~agi~~~--~l~~~~~-~~~~iv-R~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~ 143 (245)
T TIGR00112 68 GKDKLLISIAAGVTLE--KLSQLLG-GTRRVV-RVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEA 143 (245)
T ss_pred cCCCEEEEecCCCCHH--HHHHHcC-CCCeEE-EECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 4566777664443322 3333332 112222 223344555556665554442 34556789999999999666764
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 89 -AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 89 -~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
.-....+--+...+++..+.++.+ .+.+.|+++++..+++....
T Consensus 144 ~~~~~talsgsgPA~~~~~~~al~~---~~v~~Gl~~~~A~~lv~~~~ 188 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLFIEALAD---AGVKQGLPRELALELAAQTV 188 (245)
T ss_pred HcchHHhhccCcHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHH
Confidence 444555544556666666666665 46778999999999887654
No 90
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=84.49 E-value=16 Score=32.29 Aligned_cols=136 Identities=14% Similarity=0.007 Sum_probs=75.2
Q ss_pred eeEEecCC----HHhHHHHHHHHHHhcc-ceecC-C-CCH--HHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 044696 59 LAIFAAGD----SAVVQWLTPLFEVLGK-PTFMG-G-AGC--GQSCKI--------------ANQIVVGANLLGLSEGLV 115 (220)
Q Consensus 59 l~i~~gG~----~~~~~~~~~~l~~~~~-~~~~G-~-~G~--a~~~Kl--------------~~n~~~~~~~~~~aEa~~ 115 (220)
...+.+-+ .+..+.++.+|.. .. .+|.. + .|. +.++|= =.|.-.+....++.|...
T Consensus 160 ~~~ia~~~~~~~~~~a~~~~~lf~~-~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~ 238 (342)
T TIGR03376 160 ETTVGYRDPADFDVDARVLKALFHR-PYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIK 238 (342)
T ss_pred eEEEEeCCCcchHHHHHHHHHHhCC-CCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 44455555 5555666666652 11 33333 2 343 555552 247777777888999999
Q ss_pred HHHHcCCCHH--HHHH------HHhccCCChHHHHhhhhhhccccCCCCchhhHH------------HHHHHHHHHHHhh
Q 044696 116 FADEAGLDVR--KWRD------AVKGGAAGSMAMELYGERMIEKDFRPGGFAEYM------------VKDMGMGVDVVEE 175 (220)
Q Consensus 116 la~~~Gl~~~--~~~~------~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~------------~KD~~~~~~~a~~ 175 (220)
+++..|=+++ +++. ++-.... |.- ...+.++.++ +.+++.. ..-.+.+.+.+++
T Consensus 239 l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s-sRN-~~~G~~l~~~----g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~ 312 (342)
T TIGR03376 239 FARMFFPTGEVTFTFESCGVADLITTCLG-GRN-FKVGRAFAKT----GKSLEELEKELLNGQSLQGVATAKEVHELLKN 312 (342)
T ss_pred HHHHhCCCCCCCcccccchhhhhhheeec-Ccc-HHHHHHHHhc----CCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHH
Confidence 9999998776 6643 3322211 110 0112223220 1122222 2234566677788
Q ss_pred cccCCCCC--ccHHHHHHHHHHHHHHCCCCCCChHHHHH
Q 044696 176 SEDERVVV--LPGAALGKQLFSAMVANGDGKFGTQGLVS 212 (220)
Q Consensus 176 ~~~~~g~~--~p~~~~~~~~~~~a~~~G~g~~d~~av~~ 212 (220)
. ++. +|+.+++.+++ +++.+...+++
T Consensus 313 ~----~i~~~~Pi~~~vy~il-------~~~~~~~~~~~ 340 (342)
T TIGR03376 313 K----NKDDEFPLFEAVYQIL-------YEGLPPKKLPE 340 (342)
T ss_pred c----CCCcCCCHHHHHHHHH-------hCCCCHHHHHh
Confidence 8 999 99999988876 34455555443
No 91
>PLN02256 arogenate dehydrogenase
Probab=83.71 E-value=5.1 Score=34.79 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=52.6
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCChHH--hhccceeEEecC--------CHHhHHHHHHHH
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGDIG--ARDGKLAIFAAG--------DSAVVQWLTPLF 77 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~~~--a~~g~l~i~~gG--------~~~~~~~~~~~l 77 (220)
+.+.++++|+|.+++.-...+.+.+.+. .+.+|+-+ |+.|.... ..++. .++... +++.++.++.++
T Consensus 115 ~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~ 192 (304)
T PLN02256 115 QRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGL-PFVYDKVRIGDEGEREARCERFLDIF 192 (304)
T ss_pred hccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCC-eEEEecceecCCCCCHHHHHHHHHHH
Confidence 3467899999999976666666665553 35667666 77765432 22333 333332 567889999999
Q ss_pred HHhcc-ceecCC
Q 044696 78 EVLGK-PTFMGG 88 (220)
Q Consensus 78 ~~~~~-~~~~G~ 88 (220)
+.+|. ++.+-+
T Consensus 193 ~~lGa~v~~~~~ 204 (304)
T PLN02256 193 EEEGCRMVEMSC 204 (304)
T ss_pred HHCCCEEEEeCH
Confidence 99999 888875
No 92
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.62 E-value=0.92 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=29.3
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
+.++++.+++|+++..+++ .+.++++++|+.++|+
T Consensus 202 ~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 202 EKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred HHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 3467889999999988877 6888999999988875
No 93
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.53 E-value=27 Score=29.73 Aligned_cols=138 Identities=12% Similarity=0.050 Sum_probs=77.4
Q ss_pred CCChHHhhccceeEEecC--CHHhHHHHHHHHHHhccceecCC--CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Q 044696 48 SGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGG--AGCGQSCKIANQIVVGANLLGLSEGL-VFADEAGL 122 (220)
Q Consensus 48 ~g~~~~a~~g~l~i~~gG--~~~~~~~~~~~l~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~aEa~-~la~~~Gl 122 (220)
--.|.....|...+..+. +++..+.++.+|+++|.++++.+ .-...++==+.-.++ ..+.|++ ..+.+.|+
T Consensus 120 PN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~~talsgsgPAf~----~~~~eal~~a~v~~Gl 195 (272)
T PRK12491 120 PNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYV----YMFIEAMADAAVLGGM 195 (272)
T ss_pred CChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhhHHHhccCcHHHH----HHHHHHHHHHHHHcCC
Confidence 344566666665555433 23456789999999999666654 233333322222233 3344444 34677899
Q ss_pred CHHHHHHHHhccCC-ChHHHHh--hhhh-hccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHH
Q 044696 123 DVRKWRDAVKGGAA-GSMAMEL--YGER-MIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 198 (220)
Q Consensus 123 ~~~~~~~~l~~~~~-~s~~~~~--~~~~-~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~ 198 (220)
+.++-.+++..... ...++.. .-|. +.+.--+|+-+. ...++..++. |+.--+.+++..-++++.
T Consensus 196 ~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT-------~~gl~~le~~----~~~~~~~~av~aa~~r~~ 264 (272)
T PRK12491 196 PRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTT-------IEAVATLEEK----GLRTAIISAMKRCTQKSM 264 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHH-------HHHHHHHHHC----ChHHHHHHHHHHHHHHHH
Confidence 99999888876542 2223321 1122 222222343221 2334555666 888778888888877776
Q ss_pred HC
Q 044696 199 AN 200 (220)
Q Consensus 199 ~~ 200 (220)
+.
T Consensus 265 el 266 (272)
T PRK12491 265 EM 266 (272)
T ss_pred HH
Confidence 54
No 94
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.30 E-value=22 Score=30.88 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=79.3
Q ss_pred eEEecCCHHhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Q 044696 60 AIFAAGDSAVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFA 117 (220)
Q Consensus 60 ~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~---------------------~~~~~~aEa~~la 117 (220)
..+.|+.++.++.+..+|+.-+- +.+-.+.=...-.|++.|+.+. .....+.|....+
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 34556666777888888866555 5554557788888998887654 2345678888899
Q ss_pred HHcC--CCHH---HHHHHHhccC--CChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHH
Q 044696 118 DEAG--LDVR---KWRDAVKGGA--AGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALG 190 (220)
Q Consensus 118 ~~~G--l~~~---~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~ 190 (220)
++.| ++.+ .+..+..... ..|.+.+.. ..+.. --++.. ...+++.++.. |+++|..+..
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl----~~gr~---tEid~i---~G~vv~~a~~~----gi~~P~~~~L 292 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATDAENYSSMLQDL----EKGRP---TEIDAI---NGAVVRLAKKH----GLATPVNDTL 292 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcccccCchHHHHH----HcCCc---ccHHHH---hhHHHHHHHHh----CCCCcHHHHH
Confidence 9988 5553 3334444331 222222211 11111 112222 35678899999 9999999999
Q ss_pred HHHHHHHHHC
Q 044696 191 KQLFSAMVAN 200 (220)
Q Consensus 191 ~~~~~~a~~~ 200 (220)
.++.+.....
T Consensus 293 ~~lvk~~e~~ 302 (307)
T COG1893 293 YALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHh
Confidence 9888766553
No 95
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=79.02 E-value=12 Score=27.46 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=36.5
Q ss_pred CEEEecCCCC--H--HHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc--ceecCC
Q 044696 15 AVYVDTTSSH--P--ALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--PTFMGG 88 (220)
Q Consensus 15 ~~ivd~ST~~--p--~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--~~~~G~ 88 (220)
++|||.-.-. | .....+.+.+++.|..|+.-||.++.. +.+.+++...+|+.+.+ ..||..
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-------------~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-------------TEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT---------------HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-------------CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6777775441 2 244567888999999999999987532 24577888888988765 688875
Q ss_pred C
Q 044696 89 A 89 (220)
Q Consensus 89 ~ 89 (220)
-
T Consensus 96 G 96 (110)
T PF04273_consen 96 G 96 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 96
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.08 E-value=50 Score=29.15 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=108.2
Q ss_pred hcCCCCCEEEecCC-CCHHHHHHHHHHHHhc-CCcEEEecCCCChHH-----hhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 9 SALNPGAVYVDTTS-SHPALAREIFKVARER-DCWAVDAPVSGGDIG-----ARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 9 ~~~~~g~~ivd~ST-~~p~~~~~la~~~~~~-G~~~ldapV~g~~~~-----a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
+.++++.++|.+|- ..|++.+.+.+.+++. +..+ ..|.-||.- -+..+.+.+.+=|.+..++++.+|..=-
T Consensus 93 ~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~ 170 (329)
T COG0240 93 PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPY 170 (329)
T ss_pred hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCc
Confidence 34578888888874 3445556666655543 4333 233333322 2233445555556667777777776511
Q ss_pred cceecC-C-CC--HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCC----ChH
Q 044696 82 KPTFMG-G-AG--CGQSC--------------KIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAA----GSM 139 (220)
Q Consensus 82 ~~~~~G-~-~G--~a~~~--------------Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~----~s~ 139 (220)
-..|.. + .| -|-++ .+-+|.-.+...-+++|...++...|=++++++-.-.-+.. .|.
T Consensus 171 Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~ 250 (329)
T COG0240 171 FRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSP 250 (329)
T ss_pred EEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCC
Confidence 123333 2 22 22333 34567777778889999999999999998876543321110 111
Q ss_pred HHHhh--hhhhccccCCC------CchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHCCCCCCChHHHH
Q 044696 140 AMELY--GERMIEKDFRP------GGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKFGTQGLV 211 (220)
Q Consensus 140 ~~~~~--~~~~~~~~~~~------~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~g~~d~~av~ 211 (220)
..+++ +..+-++ .+. ...+-.-.+-.+.+.+.+++. ++++|+++.+.+++. ++.+....+
T Consensus 251 ~SRN~r~G~~lg~g-~~~~e~l~~~g~vvEGv~t~k~v~~la~~~----~i~mPI~~~Vy~vl~-------~~~~~~~~~ 318 (329)
T COG0240 251 LSRNRRFGLLLGQG-LSLDEALEEIGQVVEGVRTAKAVYELAKKL----GIEMPITEAVYRVLY-------EGLDPKEAI 318 (329)
T ss_pred ccccHHHHHHHhCC-CCHHHHHHhcCCeeecHHHHHHHHHHHHHc----CCCCCHHHHHHHHHh-------CCCCHHHHH
Confidence 11211 1122222 111 112333456678888999999 999999999988864 455555555
Q ss_pred HHH
Q 044696 212 SVI 214 (220)
Q Consensus 212 ~~~ 214 (220)
+.+
T Consensus 319 ~~L 321 (329)
T COG0240 319 EEL 321 (329)
T ss_pred HHH
Confidence 444
No 97
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=76.92 E-value=21 Score=26.13 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCH--HHHHHHHh----ccCCChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcc
Q 044696 104 GANLLGLSEGLVFADEAGLDV--RKWRDAVK----GGAAGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESE 177 (220)
Q Consensus 104 ~~~~~~~aEa~~la~~~Gl~~--~~~~~~l~----~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~ 177 (220)
......+.|++.++++.|++. +.+.+.+. ..+...+. ....+.+|.. .-++.. ...+++.+++.
T Consensus 38 ~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~~~S---M~~D~~~gr~---tEid~i---~G~vv~~a~~~- 107 (125)
T PF08546_consen 38 ELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPDNRSS---MLQDIEAGRP---TEIDYI---NGYVVRLAKKH- 107 (125)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTTT--H---HHHHHHTTB-----SHHHT---HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCcccc---HHHHHHHccc---ccHHHH---HHHHHHHHHHH-
Confidence 455667889999999999643 33333332 21111110 1111222221 112222 57788999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q 044696 178 DERVVVLPGAALGKQLFSA 196 (220)
Q Consensus 178 ~~~g~~~p~~~~~~~~~~~ 196 (220)
|+++|..+.+.++.+.
T Consensus 108 ---gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 108 ---GVPTPVNETIYALVKA 123 (125)
T ss_dssp ---T---HHHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHHH
Confidence 9999999988877653
No 98
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=74.74 E-value=47 Score=29.31 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred hhccceeEE-ecCC--HHhHHHHHHHHHHhcc-ce-----ecCC-C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044696 54 ARDGKLAIF-AAGD--SAVVQWLTPLFEVLGK-PT-----FMGG-A---GCGQSCKIANQIVVGANLLGLSEGLVFADEA 120 (220)
Q Consensus 54 a~~g~l~i~-~gG~--~~~~~~~~~~l~~~~~-~~-----~~G~-~---G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~ 120 (220)
...|-..++ +..+ .++.+.+..++.++|. .. .+-+ . =-+.. ..+..+....+..++.....+
T Consensus 143 ~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq-----~vl~gg~~~l~~~~~e~l~ea 217 (330)
T PRK05479 143 EGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQ-----AVLCGGLTELIKAGFETLVEA 217 (330)
T ss_pred cCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhH-----HHHhhHHHHHHHHHHHHHHHc
Confidence 456666666 6776 7788999999999997 54 2221 1 01112 234445556677778888999
Q ss_pred CCCHHHH
Q 044696 121 GLDVRKW 127 (220)
Q Consensus 121 Gl~~~~~ 127 (220)
|.+|+..
T Consensus 218 G~~pe~A 224 (330)
T PRK05479 218 GYQPEMA 224 (330)
T ss_pred CCCHHHH
Confidence 9999863
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.27 E-value=53 Score=27.84 Aligned_cols=84 Identities=8% Similarity=-0.045 Sum_probs=48.9
Q ss_pred CCChHHhhccceeEEecC--CHHhHHHHHHHHHHhccceecCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc-C
Q 044696 48 SGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGG--AGCGQSCKIANQIVVGANLLGLSEGLVF-ADEA-G 121 (220)
Q Consensus 48 ~g~~~~a~~g~l~i~~gG--~~~~~~~~~~~l~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~aEa~~l-a~~~-G 121 (220)
...|.....|...+..+- +++..+.++.+|+.+|.++++.+ .-..+++==+.- ..+..+.|++.- +.+. |
T Consensus 120 PN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~tal~gsgP----A~~~~~~~al~~a~~~~gg 195 (277)
T PRK06928 120 PSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSP----GFIAAIFEEFAEAAVRNSS 195 (277)
T ss_pred CccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCceeeeeecCHH----HHHHHHHHHHHHHHHHhCC
Confidence 345566667765554432 33566789999999999666654 222222211112 223334444432 5666 7
Q ss_pred CCHHHHHHHHhccC
Q 044696 122 LDVRKWRDAVKGGA 135 (220)
Q Consensus 122 l~~~~~~~~l~~~~ 135 (220)
++.++..+++....
T Consensus 196 l~~~~a~~l~~~~~ 209 (277)
T PRK06928 196 LSDEEAFQFLNFAL 209 (277)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988887654
No 100
>PLN02712 arogenate dehydrogenase
Probab=70.41 E-value=17 Score=35.25 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=51.6
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-cCCCChHH--hhccceeEEec---CCHH----hHHHHHHHHH
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-PVSGGDIG--ARDGKLAIFAA---GDSA----VVQWLTPLFE 78 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-pV~g~~~~--a~~g~l~i~~g---G~~~----~~~~~~~~l~ 78 (220)
+.+++|++|+|++|+.....+.+.+.+ ..++.|+-. |+.|.... .-.+...++.+ +++. .++.++.+++
T Consensus 131 ~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 209 (667)
T PLN02712 131 QRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFE 209 (667)
T ss_pred hcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHH
Confidence 456789999999999877666666555 346667766 88876521 12233344553 3332 3455669999
Q ss_pred Hhcc-ceecCC
Q 044696 79 VLGK-PTFMGG 88 (220)
Q Consensus 79 ~~~~-~~~~G~ 88 (220)
.+|. ++.+-+
T Consensus 210 ~lGa~v~~ms~ 220 (667)
T PLN02712 210 REGCKMVEMSC 220 (667)
T ss_pred HcCCEEEEeCH
Confidence 9998 888864
No 101
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=69.46 E-value=74 Score=27.44 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=69.5
Q ss_pred chhhcCCCCCEEEecCCCCHHHH-HHHHHHHHhc----CCc-EEEecCCCChHHhhccceeEEecC---------CHHhH
Q 044696 6 GIVSALNPGAVYVDTTSSHPALA-REIFKVARER----DCW-AVDAPVSGGDIGARDGKLAIFAAG---------DSAVV 70 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~-~~la~~~~~~----G~~-~ldapV~g~~~~a~~g~l~i~~gG---------~~~~~ 70 (220)
-|+++++.|.+|.++-|++|-.- .-+...++.+ |+. +==+.|-|.|. .... +++| .++..
T Consensus 102 ei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~----h~~y-viagr~t~g~elATeEQi 176 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ----HGHY-VIAGRSTEGKELATEEQI 176 (340)
T ss_pred HHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC----CceE-EEeccCCCceeeccHHHH
Confidence 37899999999999999999644 3344444322 332 22233445443 2323 3333 34667
Q ss_pred HHHHHHHHHhccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Q 044696 71 QWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRK 126 (220)
Q Consensus 71 ~~~~~~l~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~ 126 (220)
+++.++.+..|+..|+=++.--+++-=...++....++++.+-...+.+ .|-+.+.
T Consensus 177 ~r~velaes~Gk~~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eM 233 (340)
T COG4007 177 ERCVELAESTGKEVYVLPADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEM 233 (340)
T ss_pred HHHHHHHHhcCCceEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 8999999999994444333222222223345667778888888877763 5555443
No 102
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.31 E-value=85 Score=28.08 Aligned_cols=144 Identities=11% Similarity=-0.006 Sum_probs=81.3
Q ss_pred ceeEEecCCHHhHHHHHHHHHHhccceecC-C-CCH--HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 044696 58 KLAIFAAGDSAVVQWLTPLFEVLGKPTFMG-G-AGC--GQSCK--------------IANQIVVGANLLGLSEGLVFADE 119 (220)
Q Consensus 58 ~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G-~-~G~--a~~~K--------------l~~n~~~~~~~~~~aEa~~la~~ 119 (220)
+...+++-+.+..+.++.+|..=--.+|.. + .|. +.++| +-.|.-.+....++.|...++++
T Consensus 172 t~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a 251 (365)
T PTZ00345 172 SEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKI 251 (365)
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 434555556666667777776311133333 2 332 44444 33677777788899999999999
Q ss_pred cC--CCHHHHHHHHhccCCC--hHHHHhh--hhhhccccCCCCchhhH------------HHHHHHHHHHHHhhcccCCC
Q 044696 120 AG--LDVRKWRDAVKGGAAG--SMAMELY--GERMIEKDFRPGGFAEY------------MVKDMGMGVDVVEESEDERV 181 (220)
Q Consensus 120 ~G--l~~~~~~~~l~~~~~~--s~~~~~~--~~~~~~~~~~~~f~~~~------------~~KD~~~~~~~a~~~~~~~g 181 (220)
.| -++++++..-.-+... ...-+++ +..+.++. .+.+++. ...-...+.+.+++. +
T Consensus 252 ~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~----~ 325 (365)
T PTZ00345 252 FFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESH----D 325 (365)
T ss_pred hCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHc----C
Confidence 96 5888886543211100 0001111 22333321 0011111 233456677888888 9
Q ss_pred C--CccHHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 044696 182 V--VLPGAALGKQLFSAMVANGDGKFGTQGLVSVI 214 (220)
Q Consensus 182 ~--~~p~~~~~~~~~~~a~~~G~g~~d~~av~~~~ 214 (220)
+ ++|+.+.+.+++ +++.+...+++.+
T Consensus 326 i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l 353 (365)
T PTZ00345 326 LKKEFPLFTVTYKIA-------FEGADPSSLIDVL 353 (365)
T ss_pred CCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 9 899999998886 4556666655544
No 103
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=67.22 E-value=57 Score=27.29 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=47.0
Q ss_pred CCEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCHHhHHHHHHHHHHh
Q 044696 14 GAVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 14 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~~~~~~~~~~l~~~ 80 (220)
-.+.+|... -+++++.++.+.+.+.|+.|++-|+.... .-...-..++..++.-.....++++++.-
T Consensus 130 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~ 202 (265)
T cd03315 130 AELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALG 202 (265)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC
Confidence 368899865 57999999999999999999999997532 12223345566665555556667766543
No 104
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.30 E-value=72 Score=27.46 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=61.6
Q ss_pred CEEEecC-CCCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCHHhHHHHHHHHHHhcc-ceecC
Q 044696 15 AVYVDTT-SSHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG 87 (220)
Q Consensus 15 ~~ivd~S-T~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G 87 (220)
.+.+|+. .-++++++++.+.+++.++.|++-|+.... .-.+.-...|..+++-...+..+++++.-+- ++.+-
T Consensus 179 ~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 179 RLRVDANQGWTPEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 6889984 477899999999999999999999997431 2223344566666655556677888875443 33332
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 044696 88 --GAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124 (220)
Q Consensus 88 --~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~ 124 (220)
..| -+....+...+|+++|++.
T Consensus 259 ~~~~G---------------Gi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 259 LMKTG---------------GLTEALRIADLARAAGLKV 282 (316)
T ss_pred ccccC---------------CHHHHHHHHHHHHHcCCCE
Confidence 221 1122334456777777764
No 105
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.69 E-value=84 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=31.4
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCC
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGG 50 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~ 50 (220)
.+.||... -+++++.++.+.+++.++.|++-|+.-.
T Consensus 188 ~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~ 224 (355)
T cd03321 188 GLMVDYNQSLTVPEAIERGQALDQEGLTWIEEPTLQH 224 (355)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHcCCCCEEECCCCCc
Confidence 68899865 7889999999999999999999999643
No 106
>PRK03739 2-isopropylmalate synthase; Validated
Probab=63.86 E-value=1.2e+02 Score=28.75 Aligned_cols=100 Identities=6% Similarity=0.033 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH-H----h-hc------cceeEEecCCHHhHHHHHHHHHHhcc-ceec
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDI-G----A-RD------GKLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 86 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~-~----a-~~------g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~ 86 (220)
..++++..++++.+.+.|++++++ |.++... . . .. -++..++-.-+..++++...+..... .+|+
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i 127 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAKRAIVHL 127 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCCCCEEEE
Confidence 478899999999999999999999 7666544 1 1 11 23334555555555555444443443 3444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 044696 87 GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAG 121 (220)
Q Consensus 87 G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~G 121 (220)
--+.+-.-.+-..|.-.--.+..+.+++.+++..|
T Consensus 128 ~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~ 162 (552)
T PRK03739 128 YNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELA 162 (552)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 32223333333334445566777888888888766
No 107
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=59.75 E-value=1e+02 Score=26.48 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=67.4
Q ss_pred EEecCC-HHhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHc
Q 044696 61 IFAAGD-SAVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVG------------------ANLLGLSEGLVFADEA 120 (220)
Q Consensus 61 i~~gG~-~~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~------------------~~~~~~aEa~~la~~~ 120 (220)
+.+|-. .+..+++..+|..-+- ..+..++-...-.|++.|..+. .....+.|...++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 345532 2334555556665443 3333346667778888776321 2345678888999999
Q ss_pred CCCHH--HHHHHHh----ccCC-ChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHH
Q 044696 121 GLDVR--KWRDAVK----GGAA-GSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQL 193 (220)
Q Consensus 121 Gl~~~--~~~~~l~----~~~~-~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~ 193 (220)
|++.. .+.+.+. ..+. .|.+++ .+.++.- .-++.. ...+++.+++. |+|+|..+...++
T Consensus 227 G~~~~~~~~~~~~~~~~~~~~~~~sSM~q----D~~~gR~---tEid~i---~G~vvr~a~~~----Gv~~P~~~~l~~~ 292 (305)
T PRK05708 227 GQPAAAANLHEEVQRVIQATAANYSSMYQ----DVRAGRR---TEISYL---LGYACRAADRH----GLPLPRLQHLQQR 292 (305)
T ss_pred CCCccHHHHHHHHHHHHHhccCCCcHHHH----HHHcCCc---eeehhh---hhHHHHHHHHc----CCCCchHHHHHHH
Confidence 87632 2222221 1111 111111 1111110 112222 36788999999 9999999998877
Q ss_pred HHHHHH
Q 044696 194 FSAMVA 199 (220)
Q Consensus 194 ~~~a~~ 199 (220)
.+....
T Consensus 293 v~~~~~ 298 (305)
T PRK05708 293 LVAHLR 298 (305)
T ss_pred HHHHHH
Confidence 665544
No 108
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=58.88 E-value=26 Score=26.29 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=33.5
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCC
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGG 50 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~ 50 (220)
.+.+-.++|+++.. ++..+.+.+.++++++.|+++-..|.
T Consensus 86 ~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g~ 125 (143)
T cd01483 86 FLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred HhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 34567788888776 77788899999999999999999883
No 109
>PRK00915 2-isopropylmalate synthase; Validated
Probab=58.32 E-value=1.3e+02 Score=28.18 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH-----Hh----hccceeEEecCCHHhHHHHHHHHHHhcc-ceecCCC
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDI-----GA----RDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGGA 89 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~-----~a----~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~ 89 (220)
..++++..++++.+.+.|++++++ |.++... .. ..-++..++-...+.++++...+...+. .+++--+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~ 101 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIA 101 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEEC
Confidence 578899999999999999999999 5433211 11 1234455554556666666666555555 4444332
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 90 GCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 90 G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.+-.-.+-..|.-.--++..+.+++.++++.|+.
T Consensus 102 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~ 135 (513)
T PRK00915 102 TSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD 135 (513)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 2222333333434455666778889999988864
No 110
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=57.13 E-value=93 Score=29.00 Aligned_cols=102 Identities=9% Similarity=-0.108 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCCCCh-HH----------hhccceeEEecCCHHhHHHHHHHHHHhcc-ceecCCC
Q 044696 22 SSHPALAREIFKVARERDCWAVDAPVSGGD-IG----------ARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGGA 89 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~ldapV~g~~-~~----------a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~ 89 (220)
+.++++..++++.+.+.|+.++++-....+ .. ....++..++-..++.++++...+...+. .+++--+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~~ 98 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIA 98 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEEc
Confidence 478899999999999999999997443321 11 11234555665566666665554443334 4444333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 90 GCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 90 G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.+-.-++-..|.-.--++..+.|++.+++..|..
T Consensus 99 ~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~ 132 (494)
T TIGR00973 99 TSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD 132 (494)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3333333333444455667778888899887754
No 111
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=55.63 E-value=27 Score=27.85 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 20 TTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 20 ~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
.++-.|....++++.+.+.|+..+|.-+.- ..+.=.+.++++|+.+.+++++.-|..+++
T Consensus 11 vg~d~pgl~~~lar~v~s~Gcn~leSRla~---~g~~~a~i~lisgs~dav~~le~~l~~l~~ 70 (176)
T COG2716 11 VGADRPGLVNTLARAVASSGCNWLESRLAM---LGEEFAGIMLISGSWDAVTLLEATLPLLGA 70 (176)
T ss_pred ecCCCcHHHHHHHHHHHhcCCcchHHHHHH---hhcceeEEEEEeeCHHHHHHHHHHhhcccc
Confidence 488999999999999999999999987632 112335688999999999999988887763
No 112
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.17 E-value=52 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=33.2
Q ss_pred cCCCC-CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCC
Q 044696 10 ALNPG-AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSG 49 (220)
Q Consensus 10 ~~~~g-~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g 49 (220)
.+.++ .+.||.+. -++++++++.+.+.+.++.|++-|+.-
T Consensus 172 ~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~ 213 (352)
T cd03325 172 AVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLP 213 (352)
T ss_pred hhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCc
Confidence 34333 68999965 789999999999999999999999953
No 113
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.84 E-value=23 Score=26.26 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=24.3
Q ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE
Q 044696 11 LNPGAVYVDTTSSHPALAREIFKVARERDCWAVD 44 (220)
Q Consensus 11 ~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld 44 (220)
+..-.++||+| .|+.+.+..+.+.++|+.+|=
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYALKHGVPLVI 96 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHHHT-EEEE
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHHhCCCCEEE
Confidence 34467999999 999999999999999886653
No 114
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=51.32 E-value=59 Score=26.43 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCCEEEecCCCCHH---------------HHHHHHHHHHhcCCcEEEe------cCCCChHHhhccceeEEecCC-HHhH
Q 044696 13 PGAVYVDTTSSHPA---------------LAREIFKVARERDCWAVDA------PVSGGDIGARDGKLAIFAAGD-SAVV 70 (220)
Q Consensus 13 ~g~~ivd~ST~~p~---------------~~~~la~~~~~~G~~~lda------pV~g~~~~a~~g~l~i~~gG~-~~~~ 70 (220)
++++|||++..-+. .++.+++.+.. +.++|=+ .+..++ .......+++.|| +++.
T Consensus 93 ~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~--~~~~~~~~~v~Gdd~~ak 169 (219)
T TIGR01915 93 SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV--DDEVDCDVLVCGDDEEAK 169 (219)
T ss_pred cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC--CCCCCCCEEEECCCHHHH
Confidence 46889988654332 12445555421 2445544 233332 1222345667776 5677
Q ss_pred HHHHHHHHHh-cc-ceecCCCCHHHHHH
Q 044696 71 QWLTPLFEVL-GK-PTFMGGAGCGQSCK 96 (220)
Q Consensus 71 ~~~~~~l~~~-~~-~~~~G~~G~a~~~K 96 (220)
+++..+.+.+ |- .+++|+.-.+-.+-
T Consensus 170 ~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 170 EVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred HHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 8899999999 87 99999876554443
No 115
>PRK06436 glycerate dehydrogenase; Provisional
Probab=50.68 E-value=17 Score=31.51 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=33.7
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCC--cEEEe
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDC--WAVDA 45 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~lda 45 (220)
+.++.+++|.++||+|+..+-...++.+.+++..+ ..+|.
T Consensus 194 ~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV 235 (303)
T PRK06436 194 KMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDV 235 (303)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEcc
Confidence 56788999999999999999999999999987533 23676
No 116
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=50.61 E-value=1.4e+02 Score=26.37 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=43.7
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCHHh-HHHHHHHHHH
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDSAV-VQWLTPLFEV 79 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~~~-~~~~~~~l~~ 79 (220)
.+.||.+. -++++++++.+.+++.+..|++-|+.-.. .-...-...+..+-.-.. .+..+++++.
T Consensus 191 ~l~vDan~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~ 262 (368)
T cd03329 191 RLMHDGAHWYSRADALRLGRALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLA 262 (368)
T ss_pred eEEEECCCCcCHHHHHHHHHHhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh
Confidence 57899854 78999999999999999999999996432 112222344433322223 5567777765
No 117
>PRK06141 ornithine cyclodeaminase; Validated
Probab=49.53 E-value=8.2 Score=33.58 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=26.5
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
.+++|+ +||+++.++...+++...+.+++..|+|-
T Consensus 208 ~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 208 WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 456776 78888888888888887777777777775
No 118
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=49.39 E-value=15 Score=32.63 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=29.1
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVD 44 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld 44 (220)
+.+.+.+....++|++..-. ....+.+.+.+.|++|||
T Consensus 59 ~~l~~~~~~~dvVin~~gp~--~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPF--FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGG--GHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHhcCCEEEECCccc--hhHHHHHHHHHhCCCeec
Confidence 34556677889999976544 788999999999999999
No 119
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=49.09 E-value=65 Score=26.18 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=41.9
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcE--EEecCCCC---hHHhhccceeEEec
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWA--VDAPVSGG---DIGARDGKLAIFAA 64 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~--ldapV~g~---~~~a~~g~l~i~~g 64 (220)
.+..+|-.+|..++..+++.+.++++|+-+ +|-|-.+. |...+.|.+.+-++
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais 124 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS 124 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence 577888899999999999999999999877 78876543 56677777777664
No 120
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=49.02 E-value=1e+02 Score=27.22 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=44.4
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
.+.||... -++++++++.+.+.+.++.|++-|+.-.- .-.......|..+=.-..+..++.+++.-+
T Consensus 189 ~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~ 261 (368)
T TIGR02534 189 SVRVDVNAAWDERTALHYLPQLADAGVELIEQPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKASA 261 (368)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC
Confidence 68899855 88999999999999999999999995431 112223334443323234455666666544
No 121
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.99 E-value=1.1e+02 Score=22.96 Aligned_cols=40 Identities=8% Similarity=-0.104 Sum_probs=22.3
Q ss_pred ceeEEecCCHHhHHHHHHHHHHhcc--ceecCCCCHHHHHHHHH
Q 044696 58 KLAIFAAGDSAVVQWLTPLFEVLGK--PTFMGGAGCGQSCKIAN 99 (220)
Q Consensus 58 ~l~i~~gG~~~~~~~~~~~l~~~~~--~~~~G~~G~a~~~Kl~~ 99 (220)
...+++||.... .-...|..+|- +|+.|.+-.....++..
T Consensus 84 ~i~vivGG~~~~--~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 84 DILVVVGGVIPP--QDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCEEEEeCCCCh--HhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 456788873321 11234777775 78888754444444433
No 122
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=48.72 E-value=1.9e+02 Score=25.50 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=46.5
Q ss_pred hcCCCC-CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCH-HhHHHHHHHHHH
Q 044696 9 SALNPG-AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDS-AVVQWLTPLFEV 79 (220)
Q Consensus 9 ~~~~~g-~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~-~~~~~~~~~l~~ 79 (220)
+.+.++ .+.||... -+++++.++.+.+++.++.|++-|+.-.. .-.....+. +++|+. .....++++++.
T Consensus 158 e~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~p-ia~gE~~~~~~~~~~~i~~ 235 (361)
T cd03322 158 EKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWMEDPTPAENQEAFRLIRQHTATP-LAVGEVFNSIWDWQNLIQE 235 (361)
T ss_pred hccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEECCCCcccHHHHHHHHhcCCCC-EEeccCCcCHHHHHHHHHh
Confidence 344444 58899976 88999999999999999999999995322 222232333 334443 234667777764
No 123
>PRK07714 hypothetical protein; Provisional
Probab=47.33 E-value=29 Score=24.80 Aligned_cols=44 Identities=2% Similarity=-0.018 Sum_probs=34.5
Q ss_pred CCccchhhcCCC--CCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 2 LDPDGIVSALNP--GAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 2 ~g~~gi~~~~~~--g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
.|.+-+...+++ -.++|-.+..+|...+++...++.+++.|+..
T Consensus 21 ~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 21 SGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred ecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 455556666654 46789999999999999999999989887654
No 124
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=47.27 E-value=31 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=36.6
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
.|.+.++..+++| +.+|-.+..+|.....+...++..++.|+..+
T Consensus 14 ~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 14 IGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred EcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4566666666555 57888899999999999999999999998877
No 125
>PF11115 DUF2623: Protein of unknown function (DUF2623); InterPro: IPR022574 This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known.
Probab=47.17 E-value=51 Score=23.42 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 107 LLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 107 ~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
..+..||=.|++++||+.+.+.|....+
T Consensus 51 ~~aA~eAG~L~RrYgL~rd~v~~FF~~~ 78 (95)
T PF11115_consen 51 QLAAWEAGELTRRYGLDRDMVADFFTEG 78 (95)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHhcC
Confidence 4578899999999999999999999864
No 126
>PRK08605 D-lactate dehydrogenase; Validated
Probab=46.88 E-value=19 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=33.7
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCC--cEEEe
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDC--WAVDA 45 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~lda 45 (220)
+.++.+++|.++||+|+..+....++.+.+.+..+ ..+|.
T Consensus 221 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV 262 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDT 262 (332)
T ss_pred HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEec
Confidence 46788999999999999999999999999987544 34676
No 127
>PRK14847 hypothetical protein; Provisional
Probab=46.68 E-value=2.1e+02 Score=25.36 Aligned_cols=101 Identities=6% Similarity=-0.099 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH------Hhhc------cceeEEecCCHHhHHHHHHHHHHhcc-ceec
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDI------GARD------GKLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 86 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~------~a~~------g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~ 86 (220)
.-++++..++++.+.+.|+..+++ |.++... -++. -++..+.=...+.+++.-........ ++|+
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi 129 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHL 129 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEE
Confidence 368899999999999999999999 5454322 1122 23445555566665555555444445 6888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 044696 87 GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122 (220)
Q Consensus 87 G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl 122 (220)
.-+.+-.-+|-..|.-.--.+..+.|++.+|+..|.
T Consensus 130 ~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~ 165 (333)
T PRK14847 130 YNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD 165 (333)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 766666666666666666677788999999999954
No 128
>PRK09389 (R)-citramalate synthase; Provisional
Probab=46.66 E-value=2.5e+02 Score=26.19 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCCh------HHhh---ccceeEEecCCHHhHHHHHHHHHHhccceecCCCC
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGD------IGAR---DGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGGAG 90 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~------~~a~---~g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G~~G 90 (220)
..++++..++++.+.+.|++++++ |+++.. .-.. ..++..++-.....+ +..+++-...+|+--+-
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di---~~a~~~g~~~v~i~~~~ 96 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDI---DAALECDVDSVHLVVPT 96 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHH---HHHHhCCcCEEEEEEcc
Confidence 468899999999999999999999 554320 1111 223334444444443 33444322355554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 044696 91 CGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122 (220)
Q Consensus 91 ~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl 122 (220)
+-.-++-..|.-.--++..+.|++.++++.|+
T Consensus 97 Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~ 128 (488)
T PRK09389 97 SDLHIEYKLKKTREEVLETAVEAVEYAKDHGL 128 (488)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 33334444444455667778888899999986
No 129
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=45.40 E-value=1.2e+02 Score=23.78 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=54.4
Q ss_pred CCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHH-HHHH-hcc-ceec--CC
Q 044696 14 GAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTP-LFEV-LGK-PTFM--GG 88 (220)
Q Consensus 14 g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~-~l~~-~~~-~~~~--G~ 88 (220)
=++||+++.-.|.. +..+.+++.|+.++.-|+...... ...-+++.+.++.. +++. --. .+|| |.
T Consensus 33 LKTII~L~~e~~~~--~~~~f~~~~~I~l~~~~~~~~~~~--------~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~ 102 (164)
T PF03162_consen 33 LKTIINLRPEPPSQ--DFLEFAEENGIKLIHIPMSSSKDP--------WVPISEEQVAEALEIILDPRNYPVLIHCNHGK 102 (164)
T ss_dssp -SEEEE--SS---H--HHHHHHHHTT-EEEE-------GG--------G----HHHHHHHHHHHH-GGG-SEEEE-SSSS
T ss_pred CceEEEecCCCCCH--HHHHHHhhcCceEEEeccccccCc--------cccCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 37899999876653 344588999999999998766443 22223444444433 4443 234 6777 55
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Q 044696 89 AGCGQSCKIANQIVVGANLLGLSEGLVFADE-AGLDVRKWRDAVKG 133 (220)
Q Consensus 89 ~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~-~Gl~~~~~~~~l~~ 133 (220)
.-.|..+-+..=+-.+...+++.|.-.++.. .....++++|....
T Consensus 103 ~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 103 DRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDV 148 (164)
T ss_dssp SHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT---
T ss_pred cchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCc
Confidence 6677777666655556777888888877765 44445555555543
No 130
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=43.74 E-value=45 Score=20.36 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=24.1
Q ss_pred HHHHHcCCCHHHHHHHHhccCCChHHHHhhh
Q 044696 115 VFADEAGLDVRKWRDAVKGGAAGSMAMELYG 145 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~ 145 (220)
.+|+..|+++.++-.+|+....-|+-...+.
T Consensus 4 dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI 34 (46)
T PF00356_consen 4 DIAREAGVSKSTVSRVLNGPPRVSEETRERI 34 (46)
T ss_dssp HHHHHHTSSHHHHHHHHTTCSSSTHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHhCCCCCCHHHHHHH
Confidence 5789999999999999998766666554443
No 131
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=43.26 E-value=36 Score=24.66 Aligned_cols=44 Identities=2% Similarity=-0.062 Sum_probs=34.7
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
+|.+.+...++.| ..+|-.+..++.+.+++...++..++.++..
T Consensus 20 ~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~ 65 (104)
T PRK05583 20 EGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG 65 (104)
T ss_pred ecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe
Confidence 5777777777554 6789999999999999999998777766433
No 132
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=43.11 E-value=1.9e+02 Score=25.18 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=45.2
Q ss_pred CEEEecC-CCCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 15 AVYVDTT-SSHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 15 ~~ivd~S-T~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
.+.||.. ..+++++.++.+.+.+.++.|++-|+.-.. .-.+.-.+.+.++..-...+.++.+++
T Consensus 191 ~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 191 DLMVDANGRWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHH
Confidence 6889984 678999999999999999999999986431 112223456666555545566667765
No 133
>PRK14017 galactonate dehydratase; Provisional
Probab=42.90 E-value=1.2e+02 Score=27.07 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=43.9
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCC-----hHHhhccceeEEecCCH-HhHHHHHHHHHH
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGG-----DIGARDGKLAIFAAGDS-AVVQWLTPLFEV 79 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~-----~~~a~~g~l~i~~gG~~-~~~~~~~~~l~~ 79 (220)
.+.||... -++++++++.+.+.+.|+.|++-|+.-. ..-.......| ++|+. -.+..++++++.
T Consensus 179 ~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pI-a~dEs~~~~~~~~~li~~ 249 (382)
T PRK14017 179 GIGVDFHGRVHKPMAKVLAKELEPYRPMFIEEPVLPENAEALPEIAAQTSIPI-ATGERLFSRWDFKRVLEA 249 (382)
T ss_pred eEEEECCCCCCHHHHHHHHHhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCE-EeCCccCCHHHHHHHHHc
Confidence 68999976 7889999999999999999999999532 22222233333 33433 234566777664
No 134
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=41.74 E-value=1.4e+02 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=29.7
Q ss_pred CEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCC
Q 044696 15 AVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGG 50 (220)
Q Consensus 15 ~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~ 50 (220)
++|++..-.+++......+.+.+.|+.||--+ +|.
T Consensus 120 kvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~ 154 (203)
T cd00959 120 KVILETGLLTDEEIIKACEIAIEAGADFIKTS-TGF 154 (203)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCC
Confidence 45788888889999999999999999999988 443
No 135
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.49 E-value=1.9e+02 Score=23.49 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCC-CChHH----------hhccceeEEecCCHHhHHHHHHHHHHhcc-ceecCCCC
Q 044696 23 SHPALAREIFKVARERDCWAVDAPVS-GGDIG----------ARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGGAG 90 (220)
Q Consensus 23 ~~p~~~~~la~~~~~~G~~~ldapV~-g~~~~----------a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~G 90 (220)
.++++..++++.+.+.|+.+++.... -++.. ....++..++-.....++..-..+...+. .+++--+.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~ 90 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFISV 90 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecCcc
Confidence 67889999999999999999999843 22322 23456667777777777774444455666 66665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 044696 91 CGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124 (220)
Q Consensus 91 ~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~ 124 (220)
+-...+...|.-..-.+..+.+++.++++.|.+.
T Consensus 91 s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 91 SDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp SHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444444444455566778889999999988765
No 136
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.38 E-value=22 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCC
Q 044696 26 ALAREIFKVARERDCWAVDAPVSG 49 (220)
Q Consensus 26 ~~~~~la~~~~~~G~~~ldapV~g 49 (220)
..+.+++..++..|++||--||.-
T Consensus 10 R~~lE~A~~La~~GIRFVpiPv~~ 33 (61)
T PF07131_consen 10 RKALEMAHSLAHIGIRFVPIPVVT 33 (61)
T ss_pred HHHHHHHHHHHHcCceeecccccc
Confidence 455677888889999999999864
No 137
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=41.06 E-value=1.3e+02 Score=21.46 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhcc-ccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHH
Q 044696 115 VFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIE-KDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQL 193 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~ 193 (220)
.+|+.+|++++.+.+.++.+-.. |.... +.| .|+ +....-++.+.+.-++. +++.+..+.+.++
T Consensus 12 Elc~~~gi~~~~l~eLve~GlIe--------p~~~~~~~~--~F~-~~~l~r~~~a~rL~~dl----~in~~gialvl~L 76 (101)
T PRK10265 12 EFCLHTGVSEEELNEIVGLGVIE--------PREIQETTW--VFD-DHAAIVVQRAVRLRHEL----ALDWPGIAVALTL 76 (101)
T ss_pred HHHHHHCcCHHHHHHHHHCCCee--------cCCCCcccc--eEC-HHHHHHHHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 57888999999999888865321 11111 111 121 22445678888999999 9999999999888
Q ss_pred HHHHHH
Q 044696 194 FSAMVA 199 (220)
Q Consensus 194 ~~~a~~ 199 (220)
+++--.
T Consensus 77 Ld~i~~ 82 (101)
T PRK10265 77 LDEIAH 82 (101)
T ss_pred HHHHHH
Confidence 876543
No 138
>PRK07283 hypothetical protein; Provisional
Probab=41.01 E-value=47 Score=23.68 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=34.8
Q ss_pred CCccchhhcCC--CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 2 LDPDGIVSALN--PGAVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 2 ~g~~gi~~~~~--~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
.|.+.+...++ +...+|-.+..+|...+++.+.++..++.++...
T Consensus 21 ~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~ 67 (98)
T PRK07283 21 SGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVF 67 (98)
T ss_pred EcHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 45666666665 4567899999999999999999998887775443
No 139
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=40.63 E-value=1.5e+02 Score=24.67 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=35.9
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhh
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGAR 55 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~ 55 (220)
++.+++++.+.+|+...++++.+.+ ++.++|--..++.+.+.
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~ 108 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT 108 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc
Confidence 6689999999999999999999976 78999988877766443
No 140
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=40.41 E-value=46 Score=23.05 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=36.0
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
+|.+.++..+++| +.+|-.+..+|.+...+...+...++.|+...
T Consensus 11 ~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 11 VGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred EchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 4666677776544 57888999999999999999999999886543
No 141
>PRK06683 hypothetical protein; Provisional
Probab=39.00 E-value=56 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
+|....+..++.| +.+|-.+..+|.+.+.+...++..++.|+..+
T Consensus 14 ~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 14 VGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred EcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 4666666666544 67899999999999999999999999988877
No 142
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=38.51 E-value=1.5e+02 Score=22.88 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHH------HHHhccC-CChHHHHhhhhhhccccCCCC--------ch
Q 044696 95 CKIANQIVVGANLLGLSEGLVFADEAGLDVR-KWR------DAVKGGA-AGSMAMELYGERMIEKDFRPG--------GF 158 (220)
Q Consensus 95 ~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~-~~~------~~l~~~~-~~s~~~~~~~~~~~~~~~~~~--------f~ 158 (220)
+++-.|...+....++.|...+++..|=+++ +++ |++-... ..|.- ...+..+.+++.+.. -.
T Consensus 26 ~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN-~~~G~~l~~g~~~~~~~~~~~~~~~ 104 (149)
T PF07479_consen 26 LGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRN-RRFGKALGKGGKSIEEAEKEMLGGQ 104 (149)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHH-HHHHHHHHHTTS-HHHHHHHHTTTS
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCc-HHHHHHHHccCCCHHHHHHhhhhcc
Confidence 3444788888999999999999999999988 443 2222211 01110 112233444421100 01
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHH
Q 044696 159 AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFS 195 (220)
Q Consensus 159 ~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~ 195 (220)
.-....-++.+.+.+++. ++++|+...+.+++.
T Consensus 105 ~vEG~~t~~~v~~l~~~~----~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 105 TVEGVRTAKIVYELAEKY----NIEFPLFTAVYKILY 137 (149)
T ss_dssp --HHHHHHHHHHHHHHHC----T-GSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh----CCCChHHHHHHHHHc
Confidence 112334567777889999 999999999988764
No 143
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=38.37 E-value=3.2e+02 Score=26.67 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=40.4
Q ss_pred CHHhHHHHHHHHHHhcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 044696 66 DSAVVQWLTPLFEVLGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVK 132 (220)
Q Consensus 66 ~~~~~~~~~~~l~~~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~ 132 (220)
++++++++..+++.+++ .+.+.+ +|. +.|=+. ...+.|++.+.+ .|++++++=.++.
T Consensus 462 ~~~~~~~~~~~~~~~gk~pv~v~d~pGf------i~nRl~---~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 462 SEQTIATTVALAKKQGKTPIVVADKAGF------YVNRIL---APYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccch------HHHHHH---HHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 56789999999999999 888876 662 223222 346678877776 5678877765553
No 144
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=38.29 E-value=1.5e+02 Score=21.22 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred hhhcCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHh
Q 044696 7 IVSALNPGAVYVDTT-SSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAV 69 (220)
Q Consensus 7 i~~~~~~g~~ivd~S-T~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~ 69 (220)
.+..+.++.++|-.| +....+..+..+.++++|+..|---=....+-++.....+.+..+++.
T Consensus 47 ~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 47 PLENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp GGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred hcccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 356678888777776 555567777778999999888666555566666666767666555543
No 145
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=38.29 E-value=85 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.4
Q ss_pred HHHHcCCCHHHHHHHHhcc
Q 044696 116 FADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 116 la~~~Gl~~~~~~~~l~~~ 134 (220)
.+++.|||++.+++.|+..
T Consensus 40 a~~~~~i~~~~~~~~l~~~ 58 (220)
T PRK10992 40 AAARKNLDIDVIEARLAAL 58 (220)
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 3588999999999988753
No 146
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.20 E-value=3e+02 Score=24.71 Aligned_cols=171 Identities=10% Similarity=0.072 Sum_probs=108.6
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHH-HHHHHHHHhccceec-----
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQ-WLTPLFEVLGKPTFM----- 86 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~-~~~~~l~~~~~~~~~----- 86 (220)
+.++++-.+-.+-...+.+.+.++.+|+.. -+.-+|-.|+..+.+.+|--+--.-+ ....+|...+...|+
T Consensus 169 KkriYlgs~~~ns~~~e~l~~v~aq~~I~v---~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyP 245 (431)
T COG4408 169 KKRIYLGSQHGNSGSAEMLTAVLAQHGIDV---EPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYP 245 (431)
T ss_pred hHheeeccCCCCChHHHHHHHHHHhcCCce---EEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCC
Confidence 556777777777777788888888888654 46678889999998888876653222 246677776652222
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC--CChHHH---------------Hhhh---
Q 044696 87 -GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA--AGSMAM---------------ELYG--- 145 (220)
Q Consensus 87 -G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~--~~s~~~---------------~~~~--- 145 (220)
|++- .-++. -+.....|.+.+..+.|+..=-++..++..- ....++ +.+.
T Consensus 246 EGPIt----~~lIr-----~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfV 316 (431)
T COG4408 246 EGPIT----PALIR-----DMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFV 316 (431)
T ss_pred CCCCC----HHHHH-----HHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHH
Confidence 4433 22333 3445789999999999999988888886431 111111 1110
Q ss_pred --hhhccccCCC--------Cc---------------------hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHH
Q 044696 146 --ERMIEKDFRP--------GG---------------------FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLF 194 (220)
Q Consensus 146 --~~~~~~~~~~--------~f---------------------~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~ 194 (220)
..++-+-|++ .| +++-. .-++.+...+..+ ++++|..+.....|
T Consensus 317 RYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy-~kla~iq~la~~l----~v~~Pt~dq~lt~y 391 (431)
T COG4408 317 RYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDY-YKLATIQLLAGAL----DVVMPTADQLLTRY 391 (431)
T ss_pred HHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHH-HHHHHHHHHHHhc----CCCCchHHHHHHHH
Confidence 0111111110 01 11111 2257788899999 99999999999999
Q ss_pred HHHHHC
Q 044696 195 SAMVAN 200 (220)
Q Consensus 195 ~~a~~~ 200 (220)
+.++.+
T Consensus 392 e~a~k~ 397 (431)
T COG4408 392 EQALKA 397 (431)
T ss_pred HHHHHH
Confidence 999875
No 147
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=37.91 E-value=38 Score=21.77 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.4
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHh
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARE 37 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~ 37 (220)
..|++.+|.||-+++...+++..+.+
T Consensus 25 ~~G~l~vdfsT~~e~~k~el~phVe~ 50 (56)
T PF11113_consen 25 DDGKLKVDFSTPSEDRKEELAPHVEK 50 (56)
T ss_pred cCCeEEEEEeCCCcchhhHHHHHHHH
Confidence 47899999999999888888766543
No 148
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.74 E-value=1.1e+02 Score=22.19 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 26 ALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 26 ~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
..+.++.+.+.++|-+.-.-.-+||-- ++|+.++|+|=+++.++.++.+++.-++
T Consensus 11 ~da~~l~~~L~d~~fraTkLAsTGGFl--kaGNTTfliGved~~vd~~~s~Ike~C~ 65 (109)
T COG3870 11 QDANELEDALTDKNFRATKLASTGGFL--KAGNTTFLIGVEDDRVDALRSLIKENCK 65 (109)
T ss_pred ccHHHHHHHHHhCCceeEEeeccCcee--ecCCeEEEEecccchhHHHHHHHHHHhh
Confidence 467889999999998888888888854 4688899999999999999999876553
No 149
>PLN02700 homoserine dehydrogenase family protein
Probab=37.73 E-value=1.9e+02 Score=26.14 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=64.9
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe---cCCCChH----HhhccceeEE----ecCCHHhHHHHHHHHHHhc
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDA---PVSGGDI----GARDGKLAIF----AAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda---pV~g~~~----~a~~g~l~i~----~gG~~~~~~~~~~~l~~~~ 81 (220)
+..++||+|.. .+.+....+++ ++|.+.|-+ |++.... .++++ ..++ |||--.+++..+.++..=.
T Consensus 109 ~~~ViVD~T~s-~~~~~~y~~aL-~~G~hVVTaNK~~~a~~~~~~~~la~~~-~~~~yEatVgaGlPiI~tl~~ll~sGd 185 (377)
T PLN02700 109 TGLVVVDCSAS-METIGALNEAV-DLGCCIVLANKKPLTSTLEDYDKLAAHP-RRIRHESTVGAGLPVIASLNRILSSGD 185 (377)
T ss_pred CCCEEEECCCC-hHHHHHHHHHH-HCCCeEEcCCchHhccCHHHHHHHHHcC-CeEEEEeeeeeccchHHHHHHHhhccC
Confidence 57999999986 56554444444 589999988 5666542 22333 3444 4555556666666554322
Q ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 044696 82 KPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124 (220)
Q Consensus 82 ~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~ 124 (220)
++..+-.+=+|+.=-+.+++ . .-..+.|++.-|++.|...
T Consensus 186 ~I~~I~GIlnGT~nyIl~~m-~--~g~~fseal~eAq~~GyaE 225 (377)
T PLN02700 186 PVHRIVGSLSGTLGYVMSEL-E--DGKPFSEVVKQAKSLGYTE 225 (377)
T ss_pred CEEEEEEEEeChHHHHHHHH-h--cCCCHHHHHHHHHHcCCCC
Confidence 36667555455554444444 2 2356889999999988753
No 150
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.66 E-value=87 Score=26.67 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHH
Q 044696 23 SHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPL 76 (220)
Q Consensus 23 ~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~ 76 (220)
...+.++++.+++.++|+.++..+ ....+.+.+|||...+..++.+
T Consensus 14 ~a~~~~~~l~~~l~~~g~~~~~~~--------~~~D~vi~lGGDGT~L~a~~~~ 59 (264)
T PRK03501 14 ELVEKVKPLKKIAEEYGFTVVDHP--------KNANIIVSIGGDGTFLQAVRKT 59 (264)
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCC--------CCccEEEEECCcHHHHHHHHHh
Confidence 344556778888889998876432 2357999999999988777764
No 151
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=36.68 E-value=3.2e+02 Score=25.73 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH-----Hh-----hccceeEEecCCHH----hHHHHHHHHHHhcc-ce
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDI-----GA-----RDGKLAIFAAGDSA----VVQWLTPLFEVLGK-PT 84 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~-----~a-----~~g~l~i~~gG~~~----~~~~~~~~l~~~~~-~~ 84 (220)
..++++..++++.+.+.|+.++++ |.+.... .. ...++..++-..++ ..++.-+.+...+. .+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEE
Confidence 568899999999999999999999 4443211 11 12334444433222 11222222333355 55
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 85 FMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 85 ~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
|+--+.+-.-.+-..|.-.--++..+.+++.+++..|+.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~ 137 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE 137 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 554433344444344444556677788888999888865
No 152
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=36.37 E-value=1.8e+02 Score=25.52 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=43.0
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCH-HhHHHHHHHHHH
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDS-AVVQWLTPLFEV 79 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~-~~~~~~~~~l~~ 79 (220)
.+.||... -+++++.++.+.+.+.++.|++-|+.-.. .-..+.... ++.|+. .....++++++.
T Consensus 190 ~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~p-ia~dE~~~~~~~~~~~i~~ 260 (365)
T cd03318 190 SVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNRVP-IMADESVSGPADAFELARR 260 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHHHHHHhhcCCC-EEcCcccCCHHHHHHHHHh
Confidence 68899954 88999999999999999999999995431 122222333 333332 234566777764
No 153
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=35.73 E-value=59 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHcCCCHHHHHHHHhccCCChH
Q 044696 115 VFADEAGLDVRKWRDAVKGGAAGSM 139 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~~s~ 139 (220)
.+|++.|++..++-.+++.....++
T Consensus 2 ~lA~~~gvs~~tvs~~l~g~~~vs~ 26 (52)
T cd01392 2 DIARAAGVSVATVSRVLNGKPRVSE 26 (52)
T ss_pred cHHHHHCcCHHHHHHHHcCCCCCCH
Confidence 3789999999999998886544343
No 154
>PRK06852 aldolase; Validated
Probab=35.36 E-value=1.5e+02 Score=25.82 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=62.1
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCC-----CChHH----h-hc-cceeEEecCCHH----hHHHHHHH
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVS-----GGDIG----A-RD-GKLAIFAAGDSA----VVQWLTPL 76 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~-----g~~~~----a-~~-g~l~i~~gG~~~----~~~~~~~~ 76 (220)
..|.-+- ....|+...-.++.+.+.|+++|-.+.. |.+.. . .. ...+++.||++. .++.++..
T Consensus 176 prG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~a 253 (304)
T PRK06852 176 PRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQ 253 (304)
T ss_pred ccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 3454442 3346788877888888899999999887 43321 1 12 233577777763 33444444
Q ss_pred HHHhccceecCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHh
Q 044696 77 FEVLGKPTFMGGAGCGQSCKIANQIVVGANL--LGLSEGLVFADEAGLDVRKWRDAVK 132 (220)
Q Consensus 77 l~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~--~~~aEa~~la~~~Gl~~~~~~~~l~ 132 (220)
++. .|..|...- .|.+..... ..+.+++.-.-..|.++++.+++++
T Consensus 254 i~~------aGa~Gv~~G----RNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~~~~ 301 (304)
T PRK06852 254 IHI------SGASGNATG----RNIHQKPLDEAVRMCNAIYAITVEDKSVEEALKIYN 301 (304)
T ss_pred HHH------cCCceeeec----hhhhcCCCchHHHHHHHHHHHHhCCCCHHHHHHHhc
Confidence 431 222111111 355555444 5566666666677888887777655
No 155
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.01 E-value=2e+02 Score=21.71 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=21.2
Q ss_pred ceeEEecCC----HHhHHHHHHHHHHhcc--ceecCC
Q 044696 58 KLAIFAAGD----SAVVQWLTPLFEVLGK--PTFMGG 88 (220)
Q Consensus 58 ~l~i~~gG~----~~~~~~~~~~l~~~~~--~~~~G~ 88 (220)
...+++||. ++.++..++.|..+|- +|.-|.
T Consensus 81 ~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 81 DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred CCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 356888885 3566677888999986 554444
No 156
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.34 E-value=1.8e+02 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=28.6
Q ss_pred hcCCCC-CEEEecC-------CCCHHHHHHHHHHHHhcCCcEEE
Q 044696 9 SALNPG-AVYVDTT-------SSHPALAREIFKVARERDCWAVD 44 (220)
Q Consensus 9 ~~~~~g-~~ivd~S-------T~~p~~~~~la~~~~~~G~~~ld 44 (220)
+.+.++ .+.|++| ..+++++.++++.+.+.|+.|++
T Consensus 211 ~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~ie 254 (338)
T cd04733 211 AAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVE 254 (338)
T ss_pred HHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344444 5778887 35889999999999999999998
No 157
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=34.14 E-value=62 Score=26.11 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=47.5
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE-ecC-CCChHHhhccceeEEecCCH-HhHHHHHHHHHHhccceecCCC
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVD-APV-SGGDIGARDGKLAIFAAGDS-AVVQWLTPLFEVLGKPTFMGGA 89 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld-apV-~g~~~~a~~g~l~i~~gG~~-~~~~~~~~~l~~~~~~~~~G~~ 89 (220)
+.++|++-....... .+-.+.++++|+.|++ .-. +||... .-.-|+++.+ +++++.++++
T Consensus 107 ~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv~~----~~~e~~~~~~~~~~~~~~~~~------------ 169 (200)
T cd01075 107 KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGLIN----VADELYGGNEARVLAKVEAIY------------ 169 (200)
T ss_pred CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCcee----ehhHHhCCcHHHHHHHHHHHH------------
Confidence 467777776654432 5667888999999988 334 443321 1133445543 3444444333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 044696 90 GCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAV 131 (220)
Q Consensus 90 G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l 131 (220)
..+.+.+..+++.|+++.+....+
T Consensus 170 ------------------~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 170 ------------------DTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred ------------------HHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345556667777777766554443
No 158
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=33.99 E-value=25 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=13.9
Q ss_pred hhhcCCCCCEEEecCCCC
Q 044696 7 IVSALNPGAVYVDTTSSH 24 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~ 24 (220)
+...+.+|+++||+|+.-
T Consensus 85 ~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 85 LPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHhhhcCCCEEEECCccc
Confidence 344568999999999864
No 159
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=33.80 E-value=48 Score=25.68 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=29.2
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEE
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIF 62 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~ 62 (220)
++-.++|+.| .|......-+.....-+-+|||-.+|.+ .|++..+
T Consensus 32 ~~v~vid~gt-~~~~~~~~i~~~~~d~vIiVDA~~~g~~----PG~v~~~ 76 (156)
T PRK11544 32 GGWVVIDGGS-APENDIVAIRELRPERLLIVDATDMGLN----PGEIRII 76 (156)
T ss_pred CCeEEEECCC-CHHHHHHHHHhcCCCEEEEEECCccCcC----CCEEEEE
Confidence 4667999999 6776655444333345779999777654 3565543
No 160
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=33.50 E-value=2.2e+02 Score=25.57 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCH-HhHHHHHHHHHH
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDS-AVVQWLTPLFEV 79 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~-~~~~~~~~~l~~ 79 (220)
.+.||... -++++++++.+.+++.++.|++-|+.-.. .-...-... ++.|+. .....++++++.
T Consensus 208 ~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iP-Ia~dEs~~~~~~~~~li~~ 278 (404)
T PRK15072 208 HLLHDVHHRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTP-LAVGEVFNSIWDCKQLIEE 278 (404)
T ss_pred eEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCC-EEeCcCccCHHHHHHHHHc
Confidence 68999966 88999999999999999999999995321 122222233 333432 234566777664
No 161
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=33.34 E-value=2.2e+02 Score=24.85 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=43.6
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCH-HhHHHHHHHHHH
Q 044696 15 AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDS-AVVQWLTPLFEV 79 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~-~~~~~~~~~l~~ 79 (220)
.+.||... -+++++.++.+.+.+.++.|++-|+.-.. .-....... ++.|+. -....++++++.
T Consensus 173 ~l~vDan~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~p-Ia~gE~~~~~~~~~~~i~~ 243 (341)
T cd03327 173 DLMLDCYMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKATGIP-ISTGEHEYTVYGFKRLLEG 243 (341)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhhcCCccccCCCCccCHHHHHHHHhcCCCC-eEeccCccCHHHHHHHHHc
Confidence 68899854 78999999999999999999999995431 222222333 333433 234567777764
No 162
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=33.21 E-value=16 Score=24.30 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=35.9
Q ss_pred ccchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcE-EEecCCCChHHhhccceeEEecCCHH
Q 044696 4 PDGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWA-VDAPVSGGDIGARDGKLAIFAAGDSA 68 (220)
Q Consensus 4 ~~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~-ldapV~g~~~~a~~g~l~i~~gG~~~ 68 (220)
-||-+..-..+...|..+|.+.+..+++...+.+.|+.. +...= -..+.-.+.+.| ++
T Consensus 10 ~DG~v~~~~~~~~~i~~~~~s~~ll~~v~~lL~~lGi~~~i~~~~------~~~~~y~l~i~~-~~ 68 (77)
T PF14528_consen 10 GDGSVSKNRRKSVRISISSKSKELLEDVQKLLLRLGIKASIYEKK------RKKGSYRLRISG-KS 68 (77)
T ss_dssp HHEEEECCSECEEEEEEEES-HHHHHHHHHHHHHTT--EEEEEEE------CTTTEEEEEEEC-HH
T ss_pred CCccEECCCCcEEEEEEEECCHHHHHHHHHHHHHCCCeeEEEEEc------CCCceEEEEECc-hH
Confidence 345554433345789999999999999999999999754 22110 124445666777 54
No 163
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=32.87 E-value=87 Score=23.04 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 24 HPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 24 ~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
.-+.+..+.+.+.++|.+.---.=+||=- +.|+.++|+|-+++-++++..+++.-++
T Consensus 9 qd~Da~~l~~~L~~~g~~~TkLsstGGFL--r~GNtTlliGvede~v~~vl~iIk~~c~ 65 (109)
T PF06153_consen 9 QDEDADDLSDALNENGFRVTKLSSTGGFL--REGNTTLLIGVEDEKVDEVLEIIKENCK 65 (109)
T ss_dssp EHHHHHHHHHHHHHTT--EEEEEEEETTT--TEEEEEEEEEEEGGGHHHHHHHHHHHH-
T ss_pred cHhhHHHHHHHHHHCCceEEEEeccccee--ccCCEEEEEEecHHHHHHHHHHHHHhhc
Confidence 34678899999999998876666677643 5788899999999999999999988775
No 164
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=32.86 E-value=97 Score=20.28 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.6
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
+..+.+|.++.-.++ .|...+.+.+++++.|-.++.-
T Consensus 20 l~~l~~G~~l~V~~d-~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 20 IDKLQDGEQLEVKAS-DPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred HHcCCCCCEEEEEEC-CccHHHHHHHHHHHcCCEEEEE
Confidence 445677886555555 8888899999999999998854
No 165
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.78 E-value=2.5e+02 Score=25.01 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=72.0
Q ss_pred CCEEEecCCCCHHHHHHHHHHHHh-cCCcEEEecCCCC--------hHHhhc--cceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 14 GAVYVDTTSSHPALAREIFKVARE-RDCWAVDAPVSGG--------DIGARD--GKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 14 g~~ivd~ST~~p~~~~~la~~~~~-~G~~~ldapV~g~--------~~~a~~--g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
+.+.| ...+.|++-.++.+.++. .|+.||--=+.-| ....++ .. ..+++|+=...+.++.++++ |.
T Consensus 97 ~~~~v-avG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~-~~vIaGNV~T~e~a~~Li~a-GA 173 (346)
T PRK05096 97 KHVMV-STGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPD-KTICAGNVVTGEMVEELILS-GA 173 (346)
T ss_pred ceEEE-EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCC-CcEEEecccCHHHHHHHHHc-CC
Confidence 45555 555566777777766663 4666543333333 222322 23 45677777777888888886 55
Q ss_pred -ceecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 83 -PTFMG-GAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 83 -~~~~G-~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.+.|| .||+-...+.+.. +...++.++.|+...+++.|++
T Consensus 174 D~vKVGIGpGSiCtTr~vtG-vG~PQltAV~~~a~~a~~~gvp 215 (346)
T PRK05096 174 DIVKVGIGPGSVCTTRVKTG-VGYPQLSAVIECADAAHGLGGQ 215 (346)
T ss_pred CEEEEcccCCccccCccccc-cChhHHHHHHHHHHHHHHcCCC
Confidence 88899 5999988887765 4446899999999999999875
No 166
>PRK13243 glyoxylate reductase; Reviewed
Probab=32.64 E-value=36 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCc--EEEe
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCW--AVDA 45 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~lda 45 (220)
..++.+++|.++||+|+..+-...++.+.+++..+. -+|.
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV 266 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDV 266 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEecc
Confidence 577889999999999999999999999999875432 3665
No 167
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=32.62 E-value=4.6e+02 Score=25.69 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=42.1
Q ss_pred CHHhHHHHHHHHHHhcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 66 DSAVVQWLTPLFEVLGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 66 ~~~~~~~~~~~l~~~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++++++++..+++.+++ .+.+.+ +|. +.|=+.. ..+.|++.+-+. |.+++++=.++..+
T Consensus 470 ~~~~~~~~~~~~~~lgk~pv~v~d~pGf------v~nRi~~---~~~~ea~~lv~~-Ga~~e~ID~a~~~~ 530 (715)
T PRK11730 470 SDETIATVVAYASKMGKTPIVVNDCPGF------FVNRVLF---PYFAGFSQLLRD-GADFRQIDKVMEKQ 530 (715)
T ss_pred CHHHHHHHHHHHHHhCCceEEecCcCch------hHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHHhh
Confidence 56889999999999999 888876 663 3343332 245688877764 48888876666553
No 168
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=32.48 E-value=2.7e+02 Score=22.58 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=54.8
Q ss_pred HHHHHhcCCcEEEecCCCChHHh----h--ccceeEEecCCHHhHHHHHHHHHHhccceecCCCCHHHHHHHHHHHHH--
Q 044696 32 FKVARERDCWAVDAPVSGGDIGA----R--DGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVV-- 103 (220)
Q Consensus 32 a~~~~~~G~~~ldapV~g~~~~a----~--~g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G~~G~a~~~Kl~~n~~~-- 103 (220)
++.+.+.|+.|+|-.-.=+|..- . .=+.++.+|.. +.=+..+.+-+.-+-+..=|+.|.|.....+.++=.
T Consensus 86 AqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGar-nLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~R~i~ 164 (208)
T PF01680_consen 86 AQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRTIN 164 (208)
T ss_dssp HHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEES-SHHHHHHHHHTT-SEEEEETTTTST-THHHHHHHHHHH
T ss_pred hhhHHHhCCceeccccccccccccccccchhCCCCeEecCC-CHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHHHHHH
Confidence 34566789999998744344321 1 22456777665 444555555443222777799999977665544322
Q ss_pred ----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 044696 104 ----GANLLGLSEGLVFADEAGLDVRKWRDAVKG 133 (220)
Q Consensus 104 ----~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~ 133 (220)
...-.---|-+.+|++.+.+.+.+.++-..
T Consensus 165 ~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~ 198 (208)
T PF01680_consen 165 GEIRRLQNMDDEELFAFAKEIGAPYELVKEVAEL 198 (208)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111112237778888888887766665543
No 169
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=32.23 E-value=47 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChH
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDI 52 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~ 52 (220)
.++-.++|..|..++....+. ...-+-+|||-.+|.++
T Consensus 30 ~~~v~~id~gt~~~~l~~~l~---~~d~vIiVDA~~~g~~P 67 (146)
T cd06063 30 PPHVRLVDCGTAGMEVMFRAR---GAKQLIIIDASSTGSEP 67 (146)
T ss_pred CCCeEEEECCCCHHHHHHHhc---CCCEEEEEEeCCCCCCC
Confidence 345679999999999888775 22346789998776544
No 170
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.13 E-value=66 Score=20.82 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=27.8
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEE
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVD 44 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ld 44 (220)
....+.|.+-|-+++...++.+.+++.|..+.|
T Consensus 36 ~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 36 DEARVLVGIQVPDREDLAELKERLEALGYPYVD 68 (68)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCccC
Confidence 356677888899999999999999999987765
No 171
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=2.2e+02 Score=21.46 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc--ceecCCCCHHHHHHHHHHHHHHH
Q 044696 28 AREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK--PTFMGGAGCGQSCKIANQIVVGA 105 (220)
Q Consensus 28 ~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~--~~~~G~~G~a~~~Kl~~n~~~~~ 105 (220)
..+++++++..|..|.--||.++.. .++.++..+..|+.... ..||=.-.....+-.+.. +...
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~~i-------------T~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~~-~~~g 112 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGGGI-------------TEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLGE-LDGG 112 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCCCCC-------------CHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHHH-HhcC
Confidence 3467888899999999999998643 34566777777776655 566744333333322222 1111
Q ss_pred HHHHHHHHHHHHHHcCCCH
Q 044696 106 NLLGLSEGLVFADEAGLDV 124 (220)
Q Consensus 106 ~~~~~aEa~~la~~~Gl~~ 124 (220)
.---|..+++++.|+|.
T Consensus 113 --m~~de~~a~g~a~G~dl 129 (130)
T COG3453 113 --MSRDEIEALGQAAGFDL 129 (130)
T ss_pred --CCHHHHHHHHHhhCcCC
Confidence 12345666777777763
No 172
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=31.67 E-value=1.4e+02 Score=25.11 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 21 TSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 21 ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
|+.+|+..+.+..+.++.|.. ..++..+.+.+|||...+..++.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Dlvi~iGGDGTlL~a~~~~~~ 47 (246)
T PRK04761 1 ASPTPEAQAALEELVKRYGDV-----------PIEEADVIVALGGDGFMLQTLHRYMN 47 (246)
T ss_pred CCCCHHHHHHHHHHHHHhCCC-----------CcccCCEEEEECCCHHHHHHHHHhcC
Confidence 456777777777777777653 23346899999999998877776554
No 173
>PLN02727 NAD kinase
Probab=31.54 E-value=2.1e+02 Score=29.14 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCC-CEEEecCCCCH---HHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHH-HHhcc--ce
Q 044696 12 NPG-AVYVDTTSSHP---ALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLF-EVLGK--PT 84 (220)
Q Consensus 12 ~~g-~~ivd~ST~~p---~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l-~~~~~--~~ 84 (220)
..| ++|||+-.-.. ....++.+.+++.|+.|++-||..+.. =+.+.++++..+| +.+.+ ..
T Consensus 279 ~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~a------------pt~EqVe~fa~~l~~slpkPVLv 346 (986)
T PLN02727 279 EKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTA------------PSAEQVEKFASLVSDSSKKPIYL 346 (986)
T ss_pred HCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCC------------CCHHHHHHHHHHHHhhcCCCEEE
Confidence 344 78899855443 224457778888999999999955321 1346778888888 55655 68
Q ss_pred ecCC-CCHH
Q 044696 85 FMGG-AGCG 92 (220)
Q Consensus 85 ~~G~-~G~a 92 (220)
||.. .+.+
T Consensus 347 HCKSGarRA 355 (986)
T PLN02727 347 HSKEGVWRT 355 (986)
T ss_pred ECCCCCchH
Confidence 8864 4433
No 174
>PRK08374 homoserine dehydrogenase; Provisional
Probab=30.96 E-value=1.6e+02 Score=25.88 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=63.4
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe---cCCCChH----HhhccceeEEe----cCCHHhHHHHHHHHHHh
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDA---PVSGGDI----GARDGKLAIFA----AGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda---pV~g~~~----~a~~g~l~i~~----gG~~~~~~~~~~~l~~~ 80 (220)
.+-.++||+|+ ++.+.++...+-++|.+.|-+ |++-... .++.....+++ +|--..++..+..+ -
T Consensus 90 ~~~DVvVd~t~--~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l--~ 165 (336)
T PRK08374 90 IDADIVVDVTN--DKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLLRENL--L 165 (336)
T ss_pred CCCCEEEECCC--cHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc--c
Confidence 35789999995 566778888888899999876 4443322 22333445553 33334566666665 3
Q ss_pred cc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 81 GK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 81 ~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
+. +..+-.+=+|+.=-+.++| . .-..+.|++.-|++.|+-
T Consensus 166 g~~i~~i~GIlnGT~nyIl~~m-~--~g~~f~eal~eAq~~Gya 206 (336)
T PRK08374 166 GDTVKRIEAVVNATTTFILTRM-E--QGKTFEEALKEAQTLGIA 206 (336)
T ss_pred ccceEEEEEEEechHHHHHHHh-h--CCCCHHHHHHHHHHcCCC
Confidence 45 7666554444432223332 1 234588888888887775
No 175
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.33 E-value=70 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=30.6
Q ss_pred cceeEEecCCH-HhHHHHHHHHHHhcc-ceecCCCCHHHHHH
Q 044696 57 GKLAIFAAGDS-AVVQWLTPLFEVLGK-PTFMGGAGCGQSCK 96 (220)
Q Consensus 57 g~l~i~~gG~~-~~~~~~~~~l~~~~~-~~~~G~~G~a~~~K 96 (220)
++..+++.||+ ++.+.+..+.+.+|- .+-+|+.-++..+-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 56677777766 488899999999987 88899866665443
No 176
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=30.26 E-value=79 Score=25.26 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=35.0
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHH
Q 044696 87 GGAGCG--QSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAME 142 (220)
Q Consensus 87 G~~G~a--~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~ 142 (220)
|+||+| +..|++.+.+...++.+--=-=.+|++.|++.+.|.+.....+-.-..++
T Consensus 7 G~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD 64 (179)
T COG1102 7 GLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEID 64 (179)
T ss_pred cCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHH
Confidence 567766 55566666555444442222236899999999999998876543333333
No 177
>PRK08223 hypothetical protein; Validated
Probab=30.01 E-value=1.9e+02 Score=25.00 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=38.0
Q ss_pred hcCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEe
Q 044696 9 SALNPGAVYVDTTSSH-PALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFA 63 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~-p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~ 63 (220)
+.+..-.+|||++... .++-..+.+.+.++|+.+|.+.+.|. .|++.++.
T Consensus 113 ~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~-----~gqv~v~~ 163 (287)
T PRK08223 113 AFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM-----GTALLVFD 163 (287)
T ss_pred HHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC-----eEEEEEEc
Confidence 3344567889888663 57778888999999999999988886 46666665
No 178
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=29.93 E-value=99 Score=22.85 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCC
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGG 50 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~ 50 (220)
.-.+||+++.. ++.-..+.+.+++++..|+++-+.|.
T Consensus 92 ~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 92 DYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp TSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred CCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 44677877554 77788899999999999999988754
No 179
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.52 E-value=3.9e+02 Score=23.40 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=62.6
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCc---EEEecCCCChHHhhccceeEEec-CCHHhHHHHHHHHHHhc
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCW---AVDAPVSGGDIGARDGKLAIFAA-GDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~---~ldapV~g~~~~a~~g~l~i~~g-G~~~~~~~~~~~l~~~~ 81 (220)
-++++++.|.+|.+.-|++|-.--++-+.+.++.+. |==+.|-|.+ |+..+=-| -+++..+++-.+-+..+
T Consensus 161 ki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 161 KFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred HHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhC
Confidence 367889999999999999998777777666555432 3333455554 44333111 25677888888888888
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGL 114 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~ 114 (220)
+ .|.+=..=.+....|+. ++.+..++++.+-.
T Consensus 236 k~ay~~PA~lvspV~DMgS-~VTAv~~aGiL~Y~ 268 (342)
T PRK00961 236 GNAFKMPANLIGPVCDMCS-AVTAIVYAGILAYR 268 (342)
T ss_pred CCeeecchhhcchhhhHHH-HHHHHHHHHHHHHH
Confidence 8 55553222233344442 34445555555544
No 180
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.30 E-value=1.2e+02 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 24 HPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 24 ~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
+.+.+.++.+++.++|+. +|. ....+.+.+|||...+..++.+-.
T Consensus 13 ~~~~~~~l~~~l~~~g~~-~~~---------~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 13 SKRVASKLKKYLKDFGFI-LDE---------KNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred HHHHHHHHHHHHHHcCCc-cCC---------cCCCEEEEECCcHHHHHHHHHhcc
Confidence 334567777788888987 331 345899999999998877776544
No 181
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.22 E-value=4.4e+02 Score=23.98 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhccC-CChHHHHhhhhh------hccccCCCCc--
Q 044696 93 QSCKIANQIVVGANLLGLSEGLVFADE------AGLDVRKWRDAVKGGA-AGSMAMELYGER------MIEKDFRPGG-- 157 (220)
Q Consensus 93 ~~~Kl~~n~~~~~~~~~~aEa~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~------~~~~~~~~~f-- 157 (220)
+.++-+...+.++-+...++.+.|.++ ..++...+..+.+.+. ..|-++...-.. +.+=-+++-|
T Consensus 322 ~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~~ 401 (487)
T KOG2653|consen 322 QFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFAK 401 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHHH
Confidence 446667788888889999999887755 4566677777777665 344444432211 1111122333
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHHHC
Q 044696 158 FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 200 (220)
Q Consensus 158 ~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~ 200 (220)
.+...+.+.+.++..+-+. |+|+|....+...|+--...
T Consensus 402 ~v~~~q~~wr~vV~~a~~~----gIptP~~st~Lafydgyr~e 440 (487)
T KOG2653|consen 402 AVEEAQDSWRRVVALAVEA----GIPTPAFSTALAFYDGYRSE 440 (487)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCChhHHHHHHHHhhhhhh
Confidence 3555677888899999999 99999999999999865554
No 182
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=29.09 E-value=5.5e+02 Score=25.07 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=40.6
Q ss_pred CHHhHHHHHHHHHHhcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 044696 66 DSAVVQWLTPLFEVLGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVK 132 (220)
Q Consensus 66 ~~~~~~~~~~~l~~~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~ 132 (220)
++++++.+..+++.+++ .+.+.+ +|. +.|= .....+.|++.+.+. |++++++=.++.
T Consensus 467 s~~~~~~~~~~~~~~gk~pv~v~d~pGf------i~nR---l~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 467 SAETIATTVALAKKQGKTPIVVRDGAGF------YVNR---ILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeccCcH------HHHH---HHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 45788999999999999 888876 663 2232 234466788888775 788877755554
No 183
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=28.95 E-value=1.5e+02 Score=20.25 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHH
Q 044696 115 VFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLF 194 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~~~~~~~ 194 (220)
.+|+..|++++.+.+.+..+.. .| ...++. +.|+- .....++.+...-++. +++++..+.+.+++
T Consensus 5 e~~~~~~i~~~~l~~lve~Gli-~p-------~~~~~~--~~f~~-~~l~rl~~~~rL~~Dl----~in~~gi~lil~LL 69 (84)
T PF13591_consen 5 EFCEACGIEPEFLRELVEEGLI-EP-------EGEEEE--WYFSE-EDLARLRRIRRLHRDL----GINLEGIALILDLL 69 (84)
T ss_pred HHHHHHCcCHHHHHHHHHCCCe-ee-------cCCCCe--eeECH-HHHHHHHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 5789999999988888876531 11 111111 12332 3446678889999999 99999999999888
Q ss_pred HHHH
Q 044696 195 SAMV 198 (220)
Q Consensus 195 ~~a~ 198 (220)
++-.
T Consensus 70 d~i~ 73 (84)
T PF13591_consen 70 DRIE 73 (84)
T ss_pred HHHH
Confidence 7653
No 184
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=28.95 E-value=84 Score=20.88 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEecC--CCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 20 TTSSHPALAREIFKVARERDCWAVDAPV--SGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 20 ~ST~~p~~~~~la~~~~~~G~~~ldapV--~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
++.-.|....++.+.+.++|+..+|.-. .++ .-.+.+++.++.+..++++.-|+.++
T Consensus 8 ~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~-----~f~~~~~v~~~~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 8 VGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG-----RFTLIMLVSIPEDSLERLESALEELA 66 (76)
T ss_dssp EEE--TTHHHHHHHHHHCTT-EEEEEEEEEETT-----EEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC-----eEEEEEEEEeCcccHHHHHHHHHHHH
Confidence 3456788889999999999999999864 443 34678899999888888888887764
No 185
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.89 E-value=1.2e+02 Score=26.77 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=46.5
Q ss_pred hcCCCC-CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCC-----hHHhhc--cceeEEecCCH-HhHHHHHHHHH
Q 044696 9 SALNPG-AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGG-----DIGARD--GKLAIFAAGDS-AVVQWLTPLFE 78 (220)
Q Consensus 9 ~~~~~g-~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~-----~~~a~~--g~l~i~~gG~~-~~~~~~~~~l~ 78 (220)
+.+.++ .+.||... -+++++.++.+.+++.++.|++-|+.-. ..-.++ -.+.|. +|+. -....++++++
T Consensus 177 e~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa-~gE~~~~~~~~~~li~ 255 (352)
T cd03328 177 RAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIA-AGEYAYTLAYFRRLLE 255 (352)
T ss_pred HHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhhCCCChhhHHHHHHHHhhCCCCCCEE-ecccccCHHHHHHHHH
Confidence 344444 68999976 6899999999999999999999999532 222233 223433 3433 24566777776
Q ss_pred H
Q 044696 79 V 79 (220)
Q Consensus 79 ~ 79 (220)
.
T Consensus 256 ~ 256 (352)
T cd03328 256 A 256 (352)
T ss_pred c
Confidence 4
No 186
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=28.87 E-value=3.8e+02 Score=23.04 Aligned_cols=100 Identities=7% Similarity=0.003 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChHH-----h-hcc------ceeEEecCCHHhHHHHHHHHHHhcc-ceec
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDIG-----A-RDG------KLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 86 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~~-----a-~~g------~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~ 86 (220)
..++++..++++.+.+.|++++++ |.++.... . +.+ ++..++-..+..++++......... .+++
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~~~v~i 98 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKKAIVHL 98 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCCCEEEE
Confidence 578899999999999999999999 87765441 1 221 2334444455544443333222221 1332
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 044696 87 -GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122 (220)
Q Consensus 87 -G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl 122 (220)
-+.-..+..|-. |.-.--.+..+.|++.+++..|+
T Consensus 99 ~~~~Sd~h~~~~~-~~s~~e~~~~~~~~v~~a~~~g~ 134 (284)
T cd07942 99 YNATSPLQRRVVF-GKSKEEIIEIAVDGAKLVKELAA 134 (284)
T ss_pred EEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcc
Confidence 233334433333 44455667778888999988764
No 187
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.74 E-value=1e+02 Score=17.14 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHh
Q 044696 112 EGLVFADEAGLDVRKWRDAVK 132 (220)
Q Consensus 112 Ea~~la~~~Gl~~~~~~~~l~ 132 (220)
+-+.-|...|++.+++.+.+.
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 445678899999999988775
No 188
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=28.69 E-value=1.4e+02 Score=24.97 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPV 47 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV 47 (220)
.-.++||+| +|+...+....+.++|.+++-+|.
T Consensus 60 ~~DvVid~t--~p~~~~~~~~~al~~G~~vvigtt 92 (257)
T PRK00048 60 DADVLIDFT--TPEATLENLEFALEHGKPLVIGTT 92 (257)
T ss_pred CCCEEEECC--CHHHHHHHHHHHHHcCCCEEEECC
Confidence 457899999 788889999999999999997764
No 189
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.62 E-value=2.4e+02 Score=25.29 Aligned_cols=68 Identities=21% Similarity=0.065 Sum_probs=45.1
Q ss_pred cCCCC-CEEEecCC-CCHHHHHHHHHHHHhcCCcEEEecCCCCh-----HHhhccceeEEecCCH-HhHHHHHHHHH
Q 044696 10 ALNPG-AVYVDTTS-SHPALAREIFKVARERDCWAVDAPVSGGD-----IGARDGKLAIFAAGDS-AVVQWLTPLFE 78 (220)
Q Consensus 10 ~~~~g-~~ivd~ST-~~p~~~~~la~~~~~~G~~~ldapV~g~~-----~~a~~g~l~i~~gG~~-~~~~~~~~~l~ 78 (220)
.+.++ .+.||... -+++++.++.+.+++.++.|++-|+.-.. .-.+.-...| +.|+. -....++++++
T Consensus 201 ~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPI-a~gEs~~~~~~~~~li~ 276 (385)
T cd03326 201 VLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYEEPGDPLDYALQAELADHYDGPI-ATGENLFSLQDARNLLR 276 (385)
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCE-EcCCCcCCHHHHHHHHH
Confidence 34444 68999965 78999999999999999999999995432 2222223333 33333 23456777776
No 190
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=28.62 E-value=1.4e+02 Score=20.35 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.8
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
+..+.+|.++.-.+| +|...+.+..+++..|-.++...
T Consensus 30 l~~l~~G~~l~V~~d-d~~~~~di~~~~~~~G~~~~~~~ 67 (81)
T PRK00299 30 VRNMQPGETLLIIAD-DPATTRDIPSFCRFMDHELLAQE 67 (81)
T ss_pred HHcCCCCCEEEEEeC-CccHHHHHHHHHHHcCCEEEEEE
Confidence 456778887666555 78889999999999999998643
No 191
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.60 E-value=4.7e+02 Score=24.03 Aligned_cols=177 Identities=10% Similarity=0.132 Sum_probs=114.0
Q ss_pred hhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHH-HHHHHHHHhcccee
Q 044696 7 IVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQ-WLTPLFEVLGKPTF 85 (220)
Q Consensus 7 i~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~-~~~~~l~~~~~~~~ 85 (220)
++...-|.+++|-.|...-....++.+.+++.|+.. -++..|-.||..+.+++|--+=-.=+ ..+.+|+.-+...|
T Consensus 161 vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~---~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kY 237 (429)
T PF10100_consen 161 VLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL---EVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKY 237 (429)
T ss_pred ehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE---EEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcce
Confidence 333445789999999888889999999999999754 35567778888888888865431101 25667776554344
Q ss_pred c------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC--CChHHH---------------H
Q 044696 86 M------GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGGA--AGSMAM---------------E 142 (220)
Q Consensus 86 ~------G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~--~~s~~~---------------~ 142 (220)
| ||+- +.++.+| ....-|.+.+-.+.|+++=-+++.+.... .....+ +
T Consensus 238 vYKL~PEGPIT----~~~I~~M-----~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~Q 308 (429)
T PF10100_consen 238 VYKLFPEGPIT----PTLIRDM-----VQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQ 308 (429)
T ss_pred EEecCCCCCCC----HHHHHHH-----HHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHh
Confidence 4 4544 3334433 34788999999999999989999987621 111000 1
Q ss_pred h------hhhhhc--------cccCCCCc----------------hhhHH----HHHHHHHHHHHhhcccCCCCCccHHH
Q 044696 143 L------YGERMI--------EKDFRPGG----------------FAEYM----VKDMGMGVDVVEESEDERVVVLPGAA 188 (220)
Q Consensus 143 ~------~~~~~~--------~~~~~~~f----------------~~~~~----~KD~~~~~~~a~~~~~~~g~~~p~~~ 188 (220)
. |..-++ +|.|- .| .+.-| ..-++++...++.+ ++++|..+
T Consensus 309 EYLLYVRYtsiLIDPFS~PD~~GrYF-DFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l----~v~~Ptid 383 (429)
T PF10100_consen 309 EYLLYVRYTSILIDPFSEPDEQGRYF-DFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARAL----NVSCPTID 383 (429)
T ss_pred hHHHHHHhhhheeCCCCCCCCCCCcc-cccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHh----CCCCcHHH
Confidence 1 111111 12210 01 11111 12367888999999 99999999
Q ss_pred HHHHHHHHHHHC
Q 044696 189 LGKQLFSAMVAN 200 (220)
Q Consensus 189 ~~~~~~~~a~~~ 200 (220)
...+.|+....+
T Consensus 384 ~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 384 RFLARYESKLSQ 395 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 192
>PRK07574 formate dehydrogenase; Provisional
Probab=28.51 E-value=74 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=34.5
Q ss_pred cchhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCc--EEEe
Q 044696 5 DGIVSALNPGAVYVDTTSSHPALAREIFKVARERDCW--AVDA 45 (220)
Q Consensus 5 ~gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~lda 45 (220)
...++.+++|.++||++....-...++.+.+++..+. -+|.
T Consensus 268 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV 310 (385)
T PRK07574 268 ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDV 310 (385)
T ss_pred HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEec
Confidence 3577889999999999999999999999999876543 3665
No 193
>PRK09620 hypothetical protein; Provisional
Probab=28.14 E-value=1.7e+02 Score=24.22 Aligned_cols=76 Identities=3% Similarity=-0.154 Sum_probs=46.9
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc-c-cee
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERD--CWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-K-PTF 85 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G--~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~-~-~~~ 85 (220)
.+.+=+.|=|.||..-.. .+++.+.++| +.++|.|.++.+.....+...+.+-++.+..+.++.+++... . ++|
T Consensus 16 ~iD~VR~itN~SSGfiGs--~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH 93 (229)
T PRK09620 16 KWDQVRGHTNMAKGTIGR--IIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIM 93 (229)
T ss_pred CcCCeeEecCCCcCHHHH--HHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHhcccCCCEEEE
Confidence 344445666677776654 6677788888 567899987554432223334456666666677777775433 4 777
Q ss_pred cC
Q 044696 86 MG 87 (220)
Q Consensus 86 ~G 87 (220)
+-
T Consensus 94 ~A 95 (229)
T PRK09620 94 AA 95 (229)
T ss_pred Cc
Confidence 64
No 194
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=28.13 E-value=5.9e+02 Score=25.11 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=41.1
Q ss_pred CHHhHHHHHHHHHHhcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 044696 66 DSAVVQWLTPLFEVLGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVK 132 (220)
Q Consensus 66 ~~~~~~~~~~~l~~~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~ 132 (220)
++++++.+..++..+++ .+.+++ +|. +.|=++ ...+.|++.+.+. |++++++=.++.
T Consensus 492 s~~~~~~~~~~~~~lgk~pv~v~d~pGF------i~NRi~---~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 492 SKDTLASAVAVGLKQGKVVIVVKDGPGF------YTTRCL---GPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCcCCc------hHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 55789999999999999 888886 662 334333 3466788777644 788887766654
No 195
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=28.13 E-value=2.7e+02 Score=24.13 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=30.4
Q ss_pred CEEEecCC-CCHHHHHHHHHHHHh---cCCcEEEecCCCC
Q 044696 15 AVYVDTTS-SHPALAREIFKVARE---RDCWAVDAPVSGG 50 (220)
Q Consensus 15 ~~ivd~ST-~~p~~~~~la~~~~~---~G~~~ldapV~g~ 50 (220)
.+.||... -+++++.++.+.+.+ .++.|++-|+...
T Consensus 165 ~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iEqP~~~~ 204 (320)
T PRK02714 165 KLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPD 204 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhccCCCccEEECCCCcc
Confidence 68899954 789999999999987 6899999999643
No 196
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=55 Score=25.98 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=21.3
Q ss_pred hhhcCCCC-CEEEecCCCCHHHHHHHHHHHH
Q 044696 7 IVSALNPG-AVYVDTTSSHPALAREIFKVAR 36 (220)
Q Consensus 7 i~~~~~~g-~~ivd~ST~~p~~~~~la~~~~ 36 (220)
|...++.+ .++||++-.+|.++|++-.-++
T Consensus 90 ia~~lk~~k~Vvinl~~m~~~qArRivDFla 120 (167)
T COG1799 90 IADYLKNRKAVVINLQRMDPAQARRIVDFLA 120 (167)
T ss_pred HHHHHhcCceEEEEeeeCCHHHHHHHHHHhc
Confidence 34445554 4688899999998888877664
No 197
>COG1647 Esterase/lipase [General function prediction only]
Probab=27.37 E-value=2.1e+02 Score=24.04 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred CEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhcccee--EEecCCHHhHHHHHHHHHHhc----c-ceecC
Q 044696 15 AVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLA--IFAAGDSAVVQWLTPLFEVLG----K-PTFMG 87 (220)
Q Consensus 15 ~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~--i~~gG~~~~~~~~~~~l~~~~----~-~~~~G 87 (220)
-+++--=|.+|.+.|.+++.+.++| .=+-||-.-| +|.+. ++--|+++=|+++..-.+-|- . |..+|
T Consensus 18 VLllHGFTGt~~Dvr~Lgr~L~e~G-yTv~aP~ypG-----HG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~G 91 (243)
T COG1647 18 VLLLHGFTGTPRDVRMLGRYLNENG-YTVYAPRYPG-----HGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVG 91 (243)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHCC-ceEecCCCCC-----CCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3455667999999999999999986 4577887654 34443 566788877776665554443 3 55567
Q ss_pred -CCCHHHHHHHHHHHHH
Q 044696 88 -GAGCGQSCKIANQIVV 103 (220)
Q Consensus 88 -~~G~a~~~Kl~~n~~~ 103 (220)
+-|-=-++||+.++-.
T Consensus 92 lSmGGv~alkla~~~p~ 108 (243)
T COG1647 92 LSMGGVFALKLAYHYPP 108 (243)
T ss_pred ecchhHHHHHHHhhCCc
Confidence 4687788888877543
No 198
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=27.24 E-value=57 Score=27.69 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=23.2
Q ss_pred cCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 044696 10 ALNPGAVYVDTTSSHPALAREIFKVARERDCWA 42 (220)
Q Consensus 10 ~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 42 (220)
.+..|+-++.+|+.++.+.+++.+.++++|+++
T Consensus 87 aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 87 VLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 345677666677777777777777777777764
No 199
>PHA01083 hypothetical protein
Probab=27.18 E-value=82 Score=24.50 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCCCc-hhhHHHHHHHHHH
Q 044696 110 LSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRPGG-FAEYMVKDMGMGV 170 (220)
Q Consensus 110 ~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f-~~~~~~KD~~~~~ 170 (220)
=-|++.+|+..|+|++.++=.+...-..+|-.+.....|.++--.-++ ++++..-++.+.+
T Consensus 46 de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKlnglgl~~ism~c~g~a~~~ 107 (149)
T PHA01083 46 DEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQNGLGLRTISMLCGGLAVSI 107 (149)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHh
Confidence 457889999999999877666654445566666666666543211233 4566555555444
No 200
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=27.03 E-value=2.1e+02 Score=25.52 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCCEE-EecCC--CCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc-ceecC
Q 044696 12 NPGAVY-VDTTS--SHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG 87 (220)
Q Consensus 12 ~~g~~i-vd~ST--~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G 87 (220)
.+-+++ ..-+| ++-+.++.+++.+.++|+. +.+++|||-. ++.+.++.+. +=.+|
T Consensus 70 ~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVd-----------------lIvfaGGDGT----arDVa~av~~~vPvLG 128 (355)
T COG3199 70 FKYRVIRFQESTPRTTAEDTINAVRRMVERGVD-----------------LIVFAGGDGT----ARDVAEAVGADVPVLG 128 (355)
T ss_pred CcceEEeecccCCCccHHHHHHHHHHHHhcCce-----------------EEEEeCCCcc----HHHHHhhccCCCceEe
Confidence 344555 56666 7889999999999999874 4678899987 4666666655 54455
Q ss_pred -CCC
Q 044696 88 -GAG 90 (220)
Q Consensus 88 -~~G 90 (220)
+.|
T Consensus 129 ipaG 132 (355)
T COG3199 129 IPAG 132 (355)
T ss_pred eccc
Confidence 344
No 201
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.32 E-value=1.7e+02 Score=19.13 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.1
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
++.+.+|.++.-.++ +|...+.+.+++++.|-.++..-
T Consensus 20 l~~l~~G~~l~V~~d-~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 20 LPSLKPGEILEVISD-CPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred HHcCCCCCEEEEEec-CchHHHHHHHHHHHcCCEEEEEE
Confidence 456778887665544 78888899999999998887543
No 202
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=26.28 E-value=1.4e+02 Score=21.10 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC
Q 044696 104 GANLLGLSEGLVFADEAGLDVRKWRDAVKGGA 135 (220)
Q Consensus 104 ~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~~ 135 (220)
.+++.+++-.+.++=+.|++++.+.+-|+...
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Confidence 35667888888999999999999999998654
No 203
>PRK08227 autoinducer 2 aldolase; Validated
Probab=26.12 E-value=2e+02 Score=24.61 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCC-C-hHHhhcc-ceeEEecCCHHhHHHHHHHHHHhccceecCCCCHHHHHHHHHH
Q 044696 24 HPALAREIFKVARERDCWAVDAPVSG-G-DIGARDG-KLAIFAAGDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQ 100 (220)
Q Consensus 24 ~p~~~~~la~~~~~~G~~~ldapV~g-~-~~~a~~g-~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G~~G~a~~~Kl~~n 100 (220)
.|+...-.++...+.|+++|-.+-++ + ..-.+.+ ..+++.||++... +.+|+-.-.....|..|.+.- .|
T Consensus 156 ~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~---~~~L~~v~~ai~aGa~Gv~~G----RN 228 (264)
T PRK08227 156 DARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPE---RDALEMCYQAIDEGASGVDMG----RN 228 (264)
T ss_pred hHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCH---HHHHHHHHHHHHcCCceeeec----hh
Confidence 45544455566677899999998876 1 1222223 4466778877422 223332222222343332211 47
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 044696 101 IVVGANLLGLSEGLVFADEAGLDVRKWRDAVKG 133 (220)
Q Consensus 101 ~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~ 133 (220)
.+..-....+.+++.-.-..+.++++.++++..
T Consensus 229 IfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~~ 261 (264)
T PRK08227 229 IFQSEHPVAMIKAVHAVVHENETAKEAYELYLS 261 (264)
T ss_pred hhccCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777788888888888888888888877654
No 204
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=26.06 E-value=4.5e+02 Score=23.03 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=61.5
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEec-CCHHhHHHHHHHHHHhcc-c
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAA-GDSAVVQWLTPLFEVLGK-P 83 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~g-G~~~~~~~~~~~l~~~~~-~ 83 (220)
-++++++.|.+|.+.-|++|-.--++-+.+.++.+.... -=-++.++.. ++..+.-| -+++..+++-.+-+..++ .
T Consensus 159 kii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS-~HPaaVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~a 236 (340)
T TIGR01723 159 KFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTS-YHPGCVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKA 236 (340)
T ss_pred HHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeec-cCCCCCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCe
Confidence 367889999999999999998777666666544332111 1113333333 44444322 256778888888888888 5
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044696 84 TFMGGAGCGQSCKIANQIVVGANLLGLSEGL 114 (220)
Q Consensus 84 ~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~ 114 (220)
|.+=..=.+....|+. .+.+..++++.+-.
T Consensus 237 y~~PA~LvspV~DMgS-~VTAv~~aGiL~Y~ 266 (340)
T TIGR01723 237 FKMPANLLGPVCDMCS-AVTAIVYAGLLAYR 266 (340)
T ss_pred eecchhhccchhhHHH-HHHHHHHHHHHHHH
Confidence 5543222233334432 34445555555544
No 205
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.02 E-value=82 Score=28.45 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=36.7
Q ss_pred EEEecCCCCHHHHHHHHHHHHhcCCcE-EEecCC-CC-hHHhhccceeEEecCCHHh
Q 044696 16 VYVDTTSSHPALAREIFKVARERDCWA-VDAPVS-GG-DIGARDGKLAIFAAGDSAV 69 (220)
Q Consensus 16 ~ivd~ST~~p~~~~~la~~~~~~G~~~-ldapV~-g~-~~~a~~g~l~i~~gG~~~~ 69 (220)
+..|+||.--....++++.++++|..+ ||+==+ |+ +-...+=..-++++|++.+
T Consensus 138 vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~ 194 (383)
T COG0075 138 VHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKA 194 (383)
T ss_pred EeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchh
Confidence 457889999999999999999999765 666433 22 3333333445666776644
No 206
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=25.92 E-value=2.1e+02 Score=23.45 Aligned_cols=52 Identities=29% Similarity=0.254 Sum_probs=40.6
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCC--cEEEecCCCC---hHHhhccceeEEec
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDC--WAVDAPVSGG---DIGARDGKLAIFAA 64 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~ldapV~g~---~~~a~~g~l~i~~g 64 (220)
.+..+|-..|.+++..+++.+.+.++++ ..+|.|-.+. |.-...+.+.+-+|
T Consensus 71 ~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIs 127 (210)
T COG1648 71 DDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAIS 127 (210)
T ss_pred cCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEE
Confidence 4478899999999999999999999884 4588887653 55666666665553
No 207
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=25.72 E-value=1.6e+02 Score=18.06 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWA 42 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 42 (220)
..|-+++.+...+..+-.++-+++.+||-.|
T Consensus 13 ~~Gl~y~vT~~~s~~~L~k~~~wld~rgWwY 43 (45)
T PF12123_consen 13 KDGLPYFVTDPLSDAELDKFTAWLDERGWWY 43 (45)
T ss_dssp -TS-EEEEE----HHHHHHHHHHHHHTT--E
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCcEE
Confidence 3788999999999999999999999999766
No 208
>PLN03139 formate dehydrogenase; Provisional
Probab=25.72 E-value=81 Score=28.48 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=34.2
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCc--EEEe
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDCW--AVDA 45 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~lda 45 (220)
..++.+++|.++||++....-....+.+.+++.-+. -+|.
T Consensus 276 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV 317 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDV 317 (386)
T ss_pred HHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcC
Confidence 578899999999999999999999999999876543 4675
No 209
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.65 E-value=3.3e+02 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.5
Q ss_pred cCCCC-CEEEecCC-------CCHHHHHHHHHHHHhcCCcEEEe
Q 044696 10 ALNPG-AVYVDTTS-------SHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 10 ~~~~g-~~ivd~ST-------~~p~~~~~la~~~~~~G~~~lda 45 (220)
.+.++ .+.|++|- .+++++.++++.+.+.|+.||+.
T Consensus 217 ~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 217 VWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred HcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34334 46677772 35899999999999999999995
No 210
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=25.65 E-value=3.2e+02 Score=23.19 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=45.5
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhccceec-CCCC
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM-GGAG 90 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~-G~~G 90 (220)
++|-+++-..+-+|..++++++. |+.+| |..|.|.+-..|-. + .+.++.+.+...-.+.+ |.++
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~~----G~~~v--mPlg~pIGsg~Gi~------~---~~~I~~I~e~~~vpVI~egGI~ 185 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLEDA----GCAAV--MPLGSPIGSGQGLL------N---PYNLRIIIERADVPVIVDAGIG 185 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHc----CCCEe--CCCCcCCCCCCCCC------C---HHHHHHHHHhCCCcEEEeCCCC
Confidence 46777776788899888877654 99999 77777766332211 1 23344555543334444 4588
Q ss_pred HHHHHHHHHH
Q 044696 91 CGQSCKIANQ 100 (220)
Q Consensus 91 ~a~~~Kl~~n 100 (220)
+..-++.+..
T Consensus 186 tpeda~~Ame 195 (248)
T cd04728 186 TPSDAAQAME 195 (248)
T ss_pred CHHHHHHHHH
Confidence 7776665544
No 211
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=25.55 E-value=3.7e+02 Score=21.83 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=23.4
Q ss_pred CEEEecCC--------CCHHHHHHHHHHHHhcCCcEEEecCCCCh
Q 044696 15 AVYVDTTS--------SHPALAREIFKVARERDCWAVDAPVSGGD 51 (220)
Q Consensus 15 ~~ivd~ST--------~~p~~~~~la~~~~~~G~~~ldapV~g~~ 51 (220)
.+|||.-. .++++..+.++.+.+.|+.||-.+-.+++
T Consensus 124 ~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~ 168 (235)
T cd00958 124 PLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTGDA 168 (235)
T ss_pred CEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCCCH
Confidence 35666544 44566565566677788888888754443
No 212
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=25.26 E-value=3.4e+02 Score=21.86 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=67.5
Q ss_pred EEEecCCCCHHHHHHHHHHHHhcCCcEEEecC--CCChHHhhccceeEEecCCHHhHHHHHHHHHHhc---c-ceec---
Q 044696 16 VYVDTTSSHPALAREIFKVARERDCWAVDAPV--SGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG---K-PTFM--- 86 (220)
Q Consensus 16 ~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV--~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~---~-~~~~--- 86 (220)
+|--.+.-.|.-..++++.+.++|+..+|.-. .|+ .-...++++|+...+++.+.-|..++ . .+++
T Consensus 10 viTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg-----~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~ 84 (190)
T PRK11589 10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE-----EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT 84 (190)
T ss_pred EEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC-----ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence 34445777889999999999999999999863 444 34567788999888888888887766 2 2333
Q ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 044696 87 GGAGCGQSCK-IANQIVVGANLLGLSEGLVFADEAGLDVRKWRDA 130 (220)
Q Consensus 87 G~~G~a~~~K-l~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~ 130 (220)
.......... ........=.-..+.|...+-...|++...+---
T Consensus 85 ~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 85 TARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred cccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 2210000000 0000000011234556667777889998776433
No 213
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.26 E-value=1.4e+02 Score=26.42 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.9
Q ss_pred hhccceeEEecCCHHhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHH
Q 044696 54 ARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIV 102 (220)
Q Consensus 54 a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~ 102 (220)
.-+..+++.+||+.++-...+.-|+.+|- +.+.|..-.....+=+.+.+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~ 122 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFF 122 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHH
Confidence 34678899999999999999999999999 88998754444433333333
No 214
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=24.70 E-value=1.4e+02 Score=25.93 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.5
Q ss_pred cCCCCCEEEecCC-CCHHHHHHHHHHHHh---cCCcEEEecCC
Q 044696 10 ALNPGAVYVDTTS-SHPALAREIFKVARE---RDCWAVDAPVS 48 (220)
Q Consensus 10 ~~~~g~~ivd~ST-~~p~~~~~la~~~~~---~G~~~ldapV~ 48 (220)
.+....+.||... -++++++++.+++.+ .++.|++-|+.
T Consensus 154 ~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~~ 196 (322)
T PRK05105 154 AIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAFLEEPCK 196 (322)
T ss_pred hCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCccEEECCCC
Confidence 3434579999954 889999999999988 89999999984
No 215
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=24.49 E-value=1.3e+02 Score=21.63 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhh
Q 044696 109 GLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELY 144 (220)
Q Consensus 109 ~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~ 144 (220)
..--...+|++.|++.+.+++.|+.+. +|-++..
T Consensus 48 r~~GMsqvA~~aGlsRe~LYkaLS~~G--NPtf~Ti 81 (100)
T COG3636 48 RSRGMSQVARKAGLSREGLYKALSPGG--NPTFDTI 81 (100)
T ss_pred HhcCHHHHHHHhCccHHHHHHHhCCCC--CCcHHHH
Confidence 333445789999999999999998753 4544443
No 216
>COG4639 Predicted kinase [General function prediction only]
Probab=24.23 E-value=1.1e+02 Score=24.17 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCCC-EEEecCCCCHHHHHHHHHHHHhcCC----cEEEecC
Q 044696 11 LNPGA-VYVDTTSSHPALAREIFKVARERDC----WAVDAPV 47 (220)
Q Consensus 11 ~~~g~-~ivd~ST~~p~~~~~la~~~~~~G~----~~ldapV 47 (220)
+..|+ +|||-+++.|++-+++-+.+.+.|. .++|-|+
T Consensus 66 l~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~ 107 (168)
T COG4639 66 LRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPL 107 (168)
T ss_pred HHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCH
Confidence 44555 6999999999999999999999985 3466665
No 217
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=24.14 E-value=5.1e+02 Score=23.01 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=63.4
Q ss_pred hhcCCCCCEEEecC----------CCCHHHHHHHHHHHHhcCCcEEEecCCCChH----Hh------------hccceeE
Q 044696 8 VSALNPGAVYVDTT----------SSHPALAREIFKVARERDCWAVDAPVSGGDI----GA------------RDGKLAI 61 (220)
Q Consensus 8 ~~~~~~g~~ivd~S----------T~~p~~~~~la~~~~~~G~~~ldapV~g~~~----~a------------~~g~l~i 61 (220)
++.+.+.-.|+|+| ..++++..++++.+.+.|+++|++--..+|. .+ ..-++..
T Consensus 40 ~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~ 119 (347)
T PLN02746 40 LKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPV 119 (347)
T ss_pred hhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeE
Confidence 45554444567764 3788999999999999999999985322321 11 1112233
Q ss_pred EecCCHHhHHHHHHHHHHhccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 044696 62 FAAGDSAVVQWLTPLFEVLGKPTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDV 124 (220)
Q Consensus 62 ~~gG~~~~~~~~~~~l~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~ 124 (220)
++ .....+++ .+++=...+++.-+-+=.-.|--.|.-..-.+.-+.+++.++++.|+..
T Consensus 120 l~-~n~~die~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v 178 (347)
T PLN02746 120 LT-PNLKGFEA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPV 178 (347)
T ss_pred Ec-CCHHHHHH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 33 24444444 3443222333332222233333334444556667778999999888643
No 218
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=23.86 E-value=99 Score=27.83 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.3
Q ss_pred chhhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCC--cEEEe
Q 044696 6 GIVSALNPGAVYVDTTSSHPALAREIFKVARERDC--WAVDA 45 (220)
Q Consensus 6 gi~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~lda 45 (220)
..++.+++|.++||+|...+-...++.+.+.+.-. ..+|.
T Consensus 192 ~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV 233 (381)
T PRK00257 192 AFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV 233 (381)
T ss_pred HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 46788999999999999999999999999876533 35776
No 219
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=23.72 E-value=1.6e+02 Score=18.90 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCEEEec-CCCCHHHHHHHHHHHHhcCCcEEEecCCC
Q 044696 14 GAVYVDT-TSSHPALAREIFKVARERDCWAVDAPVSG 49 (220)
Q Consensus 14 g~~ivd~-ST~~p~~~~~la~~~~~~G~~~ldapV~g 49 (220)
-.+.||. .+-+++++.++.+.+.+ +.|++-|+.-
T Consensus 13 ~~l~vDan~~~~~~~a~~~~~~l~~--~~~iEeP~~~ 47 (67)
T PF01188_consen 13 IDLMVDANQAWTLEEAIRLARALED--YEWIEEPLPP 47 (67)
T ss_dssp SEEEEE-TTBBSHHHHHHHHHHHGG--GSEEESSSST
T ss_pred CeEEEECCCCCCHHHHHHHHHHcCh--hheeecCCCC
Confidence 4578888 45688999999999987 5999999975
No 220
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=23.59 E-value=85 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=21.0
Q ss_pred CCCCCEEEecCC---CCHHHHHHHHHHHHhcCCc-EEEe
Q 044696 11 LNPGAVYVDTTS---SHPALAREIFKVARERDCW-AVDA 45 (220)
Q Consensus 11 ~~~g~~ivd~ST---~~p~~~~~la~~~~~~G~~-~lda 45 (220)
+..|+-++.+|+ .+++..+++.+.++++|++ |++.
T Consensus 82 l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 82 LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 345565566665 3666677777777776654 3433
No 221
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=23.57 E-value=4.6e+02 Score=22.32 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe-c---CCCChHHhh--ccceeEEecCCHHhHHHHHHHHHHhcc-c
Q 044696 11 LNPGAVYVDTTSSHPALAREIFKVARERDCWAVDA-P---VSGGDIGAR--DGKLAIFAAGDSAVVQWLTPLFEVLGK-P 83 (220)
Q Consensus 11 ~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda-p---V~g~~~~a~--~g~l~i~~gG~~~~~~~~~~~l~~~~~-~ 83 (220)
.+||++++-||--.- +.|-+.+.+.|+.-..- | .+|.+.... +++.....-+|+--+.-++.+-.-||. .
T Consensus 89 ~rpg~iv~HcSga~~---~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~ 165 (289)
T COG5495 89 NRPGTIVAHCSGANG---SGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEP 165 (289)
T ss_pred cCCCeEEEEccCCCc---hhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCc
Confidence 468888888876543 34556666667533221 2 467777776 233222234555556667888888888 5
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 044696 84 TFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRK 126 (220)
Q Consensus 84 ~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~ 126 (220)
|-+ .+++=...-+..|....-.+..+.|++.+-+..|+|.-.
T Consensus 166 f~V-~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e 207 (289)
T COG5495 166 FCV-REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPE 207 (289)
T ss_pred eee-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcc
Confidence 544 334444444555555555678899999999999988543
No 222
>PLN02321 2-isopropylmalate synthase
Probab=23.48 E-value=6.9e+02 Score=24.27 Aligned_cols=101 Identities=6% Similarity=-0.054 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH-----Hh-hc-----------cceeEEecCCHHhHHHHHHHHHHhcc
Q 044696 22 SSHPALAREIFKVARERDCWAVDA--PVSGGDI-----GA-RD-----------GKLAIFAAGDSAVVQWLTPLFEVLGK 82 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~lda--pV~g~~~-----~a-~~-----------g~l~i~~gG~~~~~~~~~~~l~~~~~ 82 (220)
+.++++..++++.+.+.|+.+|++ |.+.... .. +. ..+..+.-.....++++...+.....
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~ 183 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKR 183 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCC
Confidence 578999999999999999999997 4332211 11 11 11122333344444443333222222
Q ss_pred -ceec-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 83 -PTFM-GGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 83 -~~~~-G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.+|+ .+.-.-+.. -..|.-.--++..+.+++.++++.|.+
T Consensus 184 ~~I~i~~stSd~h~~-~~l~~t~ee~l~~~~~~V~~Ak~~G~~ 225 (632)
T PLN02321 184 PRIHTFIATSEIHME-HKLRKTPDEVVEIARDMVKYARSLGCE 225 (632)
T ss_pred CEEEEEEcCCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 2333 333333333 233445556677888999999999863
No 223
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.37 E-value=1.2e+02 Score=21.53 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
.|.+.++..+++| +.+|-.+-.++.+...+...+..+++.++.-
T Consensus 19 ~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 19 LGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred EcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556666776655 5677778888899999999999999876554
No 224
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=23.17 E-value=7.2e+02 Score=24.38 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=43.8
Q ss_pred CHHhHHHHHHHHHHhcc-ceecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 66 DSAVVQWLTPLFEVLGK-PTFMGG-AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 66 ~~~~~~~~~~~l~~~~~-~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
++++++++..++..+++ .+.+.+ +| .+.|=+.. ..+.|++.+.+ .|.+++++=.++..+
T Consensus 470 s~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~---~~~~ea~~l~~-eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 470 SDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLF---PYFGGFSKLLR-DGADFVRIDKVMEKQ 530 (714)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHH---HHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 45789999999999999 888886 66 24454433 34678888876 568999887777653
No 225
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.02 E-value=4.5e+02 Score=21.98 Aligned_cols=101 Identities=14% Similarity=0.016 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCCC-ChHH----------hhccceeEEecCCHHhHHHHHHHHHHh-ccceec-CC
Q 044696 22 SSHPALAREIFKVARERDCWAVDAPVSG-GDIG----------ARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFM-GG 88 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~ldapV~g-~~~~----------a~~g~l~i~~gG~~~~~~~~~~~l~~~-~~~~~~-G~ 88 (220)
..++++..++.+.+.+.|++++++-... +|.. ...-++..++=+....++++.+....- -..+++ .+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEec
Confidence 6789999999999999999999994332 2211 112333444434444444433332111 223333 22
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 89 AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 89 ~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.-.. ..|--.|.-..-++..+.+++..+++.|+.
T Consensus 96 ~s~~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 129 (268)
T cd07940 96 TSDI-HLKYKLKKTREEVLERAVEAVEYAKSHGLD 129 (268)
T ss_pred CCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 2222 222222322334566778888899988863
No 226
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=22.99 E-value=5.2e+02 Score=22.71 Aligned_cols=56 Identities=7% Similarity=0.076 Sum_probs=35.4
Q ss_pred ccceeEEecCCHHhHHHHHHHHHHhcc-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 044696 56 DGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLDVRKW 127 (220)
Q Consensus 56 ~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~~~~~ 127 (220)
+|+-.++.|-+.+-|+++-++-..++. ++-..... +..+-+....+.++|++++.+
T Consensus 150 ~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D----------------ln~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 150 EGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD----------------INLAKQLNILLTELGVPRERI 206 (319)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH----------------HHHHHHHHHHHHHcCCCHHHE
Confidence 344456777777777777777777776 54443222 234555566777899987764
No 227
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=22.98 E-value=2.4e+02 Score=18.70 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhc
Q 044696 20 TTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 20 ~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
...-.|....++.+.+.++|+..+|.-..- ....=.+.+.+..+....+..+.-|+.++
T Consensus 7 ~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~---~~~~F~m~~~~~~~~~~~~~l~~~l~~~~ 65 (77)
T cd04893 7 LGTDRPGILNELTRAVSESGCNILDSRMAI---LGTEFALTMLVEGSWDAIAKLEAALPGLA 65 (77)
T ss_pred EeCCCChHHHHHHHHHHHcCCCEEEceeeE---EcCEEEEEEEEEeccccHHHHHHHHHHHH
Confidence 455678889999999999999999988665 11112344566666544566666666555
No 228
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=22.82 E-value=1.4e+02 Score=19.39 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=21.4
Q ss_pred HHHhhcccCCCCCccHHHHHHHHHHHHHHCCC
Q 044696 171 DVVEESEDERVVVLPGAALGKQLFSAMVANGD 202 (220)
Q Consensus 171 ~~a~~~~~~~g~~~p~~~~~~~~~~~a~~~G~ 202 (220)
..+..+ ++|.++.+.+.++|+.+.+.+.
T Consensus 3 r~~~~L----~L~~~v~~~A~~i~~~~~~~~~ 30 (71)
T PF00382_consen 3 RICSKL----GLPEDVRERAKEIYKKAQERGL 30 (71)
T ss_dssp HHHHHT----T--HHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHc----CCCHHHHHHHHHHHHHHHHcCC
Confidence 456777 8899999999999999988874
No 229
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=22.61 E-value=1.4e+02 Score=21.33 Aligned_cols=31 Identities=32% Similarity=0.262 Sum_probs=20.2
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEe
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDA 45 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~lda 45 (220)
+..++||++. ++...+....+-++|.++|-+
T Consensus 59 ~~dvvVE~t~--~~~~~~~~~~~L~~G~~VVt~ 89 (117)
T PF03447_consen 59 DIDVVVECTS--SEAVAEYYEKALERGKHVVTA 89 (117)
T ss_dssp T-SEEEE-SS--CHHHHHHHHHHHHTTCEEEES
T ss_pred CCCEEEECCC--chHHHHHHHHHHHCCCeEEEE
Confidence 6889999933 344556666666789988755
No 230
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=22.53 E-value=4.7e+02 Score=21.95 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHHHHhcc-ceecC----CCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 044696 73 LTPLFEVLGK-PTFMG----GAGCGQSCKIANQIVV------------GANLLGLSEGLVFADEAGLDVRKWRDAVKGG 134 (220)
Q Consensus 73 ~~~~l~~~~~-~~~~G----~~G~a~~~Kl~~n~~~------------~~~~~~~aEa~~la~~~Gl~~~~~~~~l~~~ 134 (220)
...+|+.+=. ..-+. ++|++....|+|-+++ .+++..+.+||.=+-..--..+.+++.+..+
T Consensus 31 FMSLlK~LQ~~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~fl~~~~~g 109 (232)
T PF11251_consen 31 FMSLLKALQRDLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRFLSLLREG 109 (232)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHcC
Confidence 3566666644 33333 5788899999987764 3577777777754333222333344444443
No 231
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.43 E-value=4.3e+02 Score=21.53 Aligned_cols=89 Identities=12% Similarity=-0.046 Sum_probs=54.8
Q ss_pred hhcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChH-----Hh--hccceeEEecCCHHhHHHHHHHHHHh
Q 044696 8 VSALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDI-----GA--RDGKLAIFAAGDSAVVQWLTPLFEVL 80 (220)
Q Consensus 8 ~~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~-----~a--~~g~l~i~~gG~~~~~~~~~~~l~~~ 80 (220)
++.+...+++--.-..+++++.++++.+.+.|++.++-+...... .. +-+++.+= .|.=-..+.++...++
T Consensus 2 ~~~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vG-AGTVl~~~~a~~a~~a- 79 (204)
T TIGR01182 2 EELLREAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIG-AGTVLNPEQLRQAVDA- 79 (204)
T ss_pred hhHHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEE-EEeCCCHHHHHHHHHc-
Confidence 345567788888889999999999999999999999999865322 11 12232222 2333333455555553
Q ss_pred ccceecCCCCHHHHHHHH
Q 044696 81 GKPTFMGGAGCGQSCKIA 98 (220)
Q Consensus 81 ~~~~~~G~~G~a~~~Kl~ 98 (220)
|.-|.+++.-+-..++.|
T Consensus 80 GA~FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHA 97 (204)
T ss_pred CCCEEECCCCCHHHHHHH
Confidence 224556664344444433
No 232
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.43 E-value=1.8e+02 Score=18.47 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.9
Q ss_pred hcCCCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEec
Q 044696 9 SALNPGAVYVDTTSSHPALAREIFKVARERDCWAVDAP 46 (220)
Q Consensus 9 ~~~~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldap 46 (220)
..+.+|.++.-.++ .|...+.+.++++..|..++..-
T Consensus 21 ~~l~~g~~l~v~~d-~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 21 EKLKSGEVLEVLLD-DPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred hcCCCCCEEEEEec-CCcHHHHHHHHHHHcCCEEEEEE
Confidence 34667776555544 66688899999999998887544
No 233
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.97 E-value=5.6e+02 Score=22.68 Aligned_cols=99 Identities=14% Similarity=0.027 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEe--cCCCChH------H---hhccceeEEecCCHHhHHHHHHHHHHhccceec-CC
Q 044696 21 TSSHPALAREIFKVARERDCWAVDA--PVSGGDI------G---ARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM-GG 88 (220)
Q Consensus 21 ST~~p~~~~~la~~~~~~G~~~lda--pV~g~~~------~---a~~g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~-G~ 88 (220)
-..++++..++++.+.+.|+.++++ |+++... - ...-++..++-...+.+ +-.+++-...+++ -+
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di---~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDI---DKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHH---HHHHHcCcCEEEEEEc
Confidence 3578899999999999999999999 5443111 0 11122222232333333 3334432223333 23
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 89 AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 89 ~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.-.-+ .+-..|.-..-.+..+.+++.++++.|+.
T Consensus 94 ~Sd~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~ 127 (363)
T TIGR02090 94 TSPIH-LKYKLKKSRDEVLEKAVEAVEYAKEHGLI 127 (363)
T ss_pred CCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 22222 22222222233456777888888888854
No 234
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=21.90 E-value=1e+02 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=19.3
Q ss_pred HHHHHcCCCHHHHHHHHhccCC
Q 044696 115 VFADEAGLDVRKWRDAVKGGAA 136 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~ 136 (220)
.+|++.|++++++++.+.....
T Consensus 10 ~~A~~~~~s~~ea~~~~~~~~~ 31 (62)
T PF12668_consen 10 EFAKKLNISGEEAYNYFKRSGV 31 (62)
T ss_pred HHHHHHCcCHHHHHHHHHHcCc
Confidence 6899999999999999997643
No 235
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.75 E-value=1.4e+02 Score=22.17 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHH-HHHHHHHHHhcCCcEEEec
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPAL-AREIFKVARERDCWAVDAP 46 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~-~~~la~~~~~~G~~~ldap 46 (220)
+|.+.++..+++| .++|-.+.++|.+ ...+..+++++++.|+..+
T Consensus 33 ~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEEC
Confidence 4666667777654 5788888898965 5799999999999988776
No 236
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=21.70 E-value=1.4e+02 Score=19.50 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHHcCCCHHHHHHHHhccCCChHHH
Q 044696 115 VFADEAGLDVRKWRDAVKGGAAGSMAM 141 (220)
Q Consensus 115 ~la~~~Gl~~~~~~~~l~~~~~~s~~~ 141 (220)
.+|++.|++..++-.+++....-++..
T Consensus 5 ~iA~~~gvS~~TVSr~ln~~~~v~~~t 31 (70)
T smart00354 5 DVARLAGVSKATVSRVLNGNGRVSEET 31 (70)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCHHH
Confidence 578999999999998888755444433
No 237
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=21.70 E-value=7e+02 Score=23.72 Aligned_cols=100 Identities=6% Similarity=0.017 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEec--CCCChHHh-------hc------cceeEEecCCHHhHHHHHHHHHHhcc-cee
Q 044696 22 SSHPALAREIFKVARERDCWAVDAP--VSGGDIGA-------RD------GKLAIFAAGDSAVVQWLTPLFEVLGK-PTF 85 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~ldap--V~g~~~~a-------~~------g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~ 85 (220)
+.++++..++++.+.+.|++++++- .+. +... .. -++..++-..+..++++...+..... .+|
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~ 122 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVH 122 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEE
Confidence 4788999999999999999999985 333 2221 11 12334445555545554444433333 344
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 044696 86 MGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGL 122 (220)
Q Consensus 86 ~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl 122 (220)
+--+-+-.-.+-..|.-.--.+..+.|++.+++..|.
T Consensus 123 i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~ 159 (564)
T TIGR00970 123 FYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTK 159 (564)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4322222333333455555667778888888887653
No 238
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=21.69 E-value=1.9e+02 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCC
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGG 50 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~ 50 (220)
.+=.+||++ +.+++....+.+.++++++.|+.+-+.|.
T Consensus 112 ~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 112 QKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred hCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 345677877 55688888999999999999999977665
No 239
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=21.68 E-value=63 Score=24.41 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=27.6
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChH
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDI 52 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~ 52 (220)
++-.++|+.|..++....+. ...-+-+|||-..|.++
T Consensus 26 ~~v~vi~~g~~~~~ll~~i~---~~d~viiVDA~~~~~~p 62 (140)
T cd06070 26 CGAPVFDGGLDGFGLLSHLE---NYDIVIFIDVAVIDEDV 62 (140)
T ss_pred CCCEEEECCCcHHHHHHHHc---CCCEEEEEEeecCCCCC
Confidence 56779999998888776664 34457799998877554
No 240
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.68 E-value=5.7e+02 Score=22.62 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEe--cCCCChHH-----h-hc---cceeEEecCCHHhHHHHHHHHHHhccceecC-C
Q 044696 21 TSSHPALAREIFKVARERDCWAVDA--PVSGGDIG-----A-RD---GKLAIFAAGDSAVVQWLTPLFEVLGKPTFMG-G 88 (220)
Q Consensus 21 ST~~p~~~~~la~~~~~~G~~~lda--pV~g~~~~-----a-~~---g~l~i~~gG~~~~~~~~~~~l~~~~~~~~~G-~ 88 (220)
...++++..++++.+.+.|+.++++ |-++.... . +. .++..++-...+.+ +..+++-...+++- +
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di---~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADI---EAAARCGVDAVHISIP 94 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHH---HHHHcCCcCEEEEEEc
Confidence 3578899999999999999999999 54443220 1 11 23233332454443 44444422344443 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 89 AGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 89 ~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
.-.-+..+ ..|.-.--.+..+.+++.++++.|+.
T Consensus 95 ~Sd~~~~~-~~~~s~~e~l~~~~~~i~~ak~~g~~ 128 (365)
T TIGR02660 95 VSDLQIEA-KLRKDRAWVLERLARLVSFARDRGLF 128 (365)
T ss_pred cCHHHHHH-HhCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 33333222 22322333455567888899988854
No 241
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=21.24 E-value=3.9e+02 Score=20.61 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred CEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhh--------ccceeEEecCCHHhHHHHHHHHHH-hcccee
Q 044696 15 AVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGAR--------DGKLAIFAAGDSAVVQWLTPLFEV-LGKPTF 85 (220)
Q Consensus 15 ~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~--------~g~l~i~~gG~~~~~~~~~~~l~~-~~~~~~ 85 (220)
.+=.|.-.-+|++++++-+.+.+.|.-..+.-..-..-... ...-.++ -.++.|+++-..+.. .|
T Consensus 26 ~Ls~D~~WmspdqAk~li~~A~~eGLl~~~~~~l~~~Fd~~~v~iP~~FkP~~~~l--~e~~~fe~ild~ia~~~g---- 99 (144)
T PF09999_consen 26 ALSFDRKWMSPDQAKRLIDEAIEEGLLEEEGGYLVPNFDPSEVEIPLGFKPDEEIL--QERDPFERILDYIAAKTG---- 99 (144)
T ss_pred eEeeecCCCCHHHHHHHHHHHHHCCCeeecCCEEEEecCccccccCCCCCCcHHHH--hcccHHHHHHHHHHHhcC----
Confidence 44578889999999999999988875433221100000000 0000111 333445444444333 22
Q ss_pred cCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHH
Q 044696 86 MGGAGCGQSCKIANQIVV--GANLLGLSEGLVFADEAGLDVRKWRD 129 (220)
Q Consensus 86 ~G~~G~a~~~Kl~~n~~~--~~~~~~~aEa~~la~~~Gl~~~~~~~ 129 (220)
...-.++-.+|.+.- .+++..=+=++.+|++.|+|.+.+++
T Consensus 100 ---~~~~evv~~in~~q~~~~~~l~~e~aall~ake~Gvdv~~~~~ 142 (144)
T PF09999_consen 100 ---IEKQEVVAEINELQEELGGLLDPEAAALLYAKEKGVDVSDFAD 142 (144)
T ss_pred ---CCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCCHHHHhh
Confidence 122334444444221 11222333346789999999998765
No 242
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.22 E-value=2.9e+02 Score=19.16 Aligned_cols=86 Identities=15% Similarity=0.006 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhccCCChHHHHhhhhhhccccCCC-CchhhHHHHHHHHHHHHHhhcccCCCCCccH
Q 044696 108 LGLSEGLVFADEAGLDVRKWRDAVKGGAAGSMAMELYGERMIEKDFRP-GGFAEYMVKDMGMGVDVVEESEDERVVVLPG 186 (220)
Q Consensus 108 ~~~aEa~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~ 186 (220)
..+.+.+.+...+|+++.....+...-...+.-.-..-|..+-.+... +| +.+-+.|++...+..-|-.+
T Consensus 6 ~~~~~~~~~L~~~gl~~~~a~kl~~~yg~~ai~~l~~nPY~L~~~i~gi~F---------~~aD~iA~~~g~~~~d~~Ri 76 (94)
T PF14490_consen 6 RGLRELMAFLQEYGLSPKLAMKLYKKYGDDAIEILKENPYRLIEDIDGIGF---------KTADKIALKLGIEPDDPRRI 76 (94)
T ss_dssp ---HHHHHHHHHTT--HHHHHHHHHHH-TTHHHHHHH-STCCCB-SSSSBH---------HHHHHHHHTTT--TT-HHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHChHHHHHHccCCCH---------HHHHHHHHHcCCCCCCHHHH
Confidence 356778899999999999888887763322222222234444443321 33 33334444551111334566
Q ss_pred HHHHHHHHHHHHHCCC
Q 044696 187 AALGKQLFSAMVANGD 202 (220)
Q Consensus 187 ~~~~~~~~~~a~~~G~ 202 (220)
.+++...++.+.+.|+
T Consensus 77 ~A~i~~~L~~~~~~Gh 92 (94)
T PF14490_consen 77 RAAILYVLREAEEQGH 92 (94)
T ss_dssp HHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777777777664
No 243
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=20.77 E-value=4.3e+02 Score=21.91 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=39.2
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCCcE--EEecCCC---ChHHhhccceeEEec
Q 044696 13 PGAVYVDTTSSHPALAREIFKVARERDCWA--VDAPVSG---GDIGARDGKLAIFAA 64 (220)
Q Consensus 13 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~--ldapV~g---~~~~a~~g~l~i~~g 64 (220)
.|.-+|-..|.+|+..+++++.++++++-+ +|-|-.+ .|.-...|.+.|-+|
T Consensus 84 ~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIS 140 (223)
T PRK05562 84 KDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALN 140 (223)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEE
Confidence 567778888999999999999999988654 4555433 255677777877664
No 244
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.65 E-value=85 Score=27.76 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=39.8
Q ss_pred HHHHhcCCcE---------EEecCCCChHHhhccceeEEecCCHHhHHHHHHHHH
Q 044696 33 KVARERDCWA---------VDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE 78 (220)
Q Consensus 33 ~~~~~~G~~~---------ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~ 78 (220)
.++.+.|+++ +|.||.--.++|..|+-.++++-+++.++.++.+++
T Consensus 130 ~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~ 184 (361)
T COG1759 130 KLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLK 184 (361)
T ss_pred HHHHHcCCCCCcccCChHHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHH
Confidence 5677778776 889999888999999988899999999999999887
No 245
>smart00877 BMC Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.
Probab=20.64 E-value=2.7e+02 Score=18.59 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=32.2
Q ss_pred EecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHH
Q 044696 18 VDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTP 75 (220)
Q Consensus 18 vd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~ 75 (220)
+++.+ .+......-..++..++.+++.-..++ |...+++.|+-..++.+..
T Consensus 5 iE~~~-~~~~i~aaD~a~KaA~V~l~~~~~~~~------g~~~~~v~Gdvs~V~~Av~ 55 (75)
T smart00877 5 IETRP-AAAAIEAADAALKAANVELVGYESIGG------GKVTVIITGDVAAVRAAVE 55 (75)
T ss_pred EEEeC-HHHHHHHHHHHhhhcCcEEEEEEecCC------CEEEEEEEEcHHHHHHHHH
Confidence 44443 233333444555667899988877664 5678889998877655433
No 246
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.62 E-value=4.2e+02 Score=23.03 Aligned_cols=54 Identities=22% Similarity=0.134 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCCcEE-EecC---CCC---------------h-HH-hhccceeEEecCCHHhHHHHHHHH
Q 044696 24 HPALAREIFKVARERDCWAV-DAPV---SGG---------------D-IG-ARDGKLAIFAAGDSAVVQWLTPLF 77 (220)
Q Consensus 24 ~p~~~~~la~~~~~~G~~~l-dapV---~g~---------------~-~~-a~~g~l~i~~gG~~~~~~~~~~~l 77 (220)
..+.++++.+++.++|+.++ +... .+. + .. ...-.+.+.+|||...+..++.+.
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~aar~~~ 89 (305)
T PRK02649 15 AVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVLSAARQLA 89 (305)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHHHHHHHHhc
Confidence 44667888899999998753 3210 010 0 11 123579999999999887766654
No 247
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.60 E-value=1.2e+02 Score=18.08 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=15.5
Q ss_pred HHHHHHcCCCHHHHHHHHhc
Q 044696 114 LVFADEAGLDVRKWRDAVKG 133 (220)
Q Consensus 114 ~~la~~~Gl~~~~~~~~l~~ 133 (220)
-.+|+..|++..+++.++..
T Consensus 25 ~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 25 AEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHhc
Confidence 46788999999999988764
No 248
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.48 E-value=1.2e+02 Score=28.16 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=59.4
Q ss_pred CEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHHhhccceeEEecCCHHhHHHHHHHHHHhcc-ceecC-CCCHH
Q 044696 15 AVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG-GAGCG 92 (220)
Q Consensus 15 ~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~a~~g~l~i~~gG~~~~~~~~~~~l~~~~~-~~~~G-~~G~a 92 (220)
.++||.+...|....++-+++++ .|.|.||+. |.-...+.++.+.++ |. .+-+| .+|+-
T Consensus 240 ~i~~D~a~g~~~~~~~~i~~i~~---~~~~~~vi~---------------g~~~t~~~~~~l~~~-G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 240 VLVIDTAHGHQVKMISAIKAVRA---LDLGVPIVA---------------GNVVSAEGVRDLLEA-GANIIKVGVGPGAM 300 (475)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHH---HCCCCeEEE---------------eccCCHHHHHHHHHh-CCCEEEECCcCCcc
Confidence 45566666666666665555554 234444443 333344556666654 55 77777 47877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHhcc
Q 044696 93 QSCKIANQIVVGANLLGLSEGLVFADEAGLD---------VRKWRDAVKGG 134 (220)
Q Consensus 93 ~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~---------~~~~~~~l~~~ 134 (220)
....... -+......++.|+...++++|++ +.++.+.|..+
T Consensus 301 ~ttr~~~-~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~G 350 (475)
T TIGR01303 301 CTTRMMT-GVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAG 350 (475)
T ss_pred ccCcccc-CCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 6554222 22335678888988888888765 56667777644
No 249
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=20.41 E-value=1.6e+02 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=33.1
Q ss_pred cCCC-CCEEEecCC-CCHHHHHHHHHHHHh---cCCcEEEecCCCC
Q 044696 10 ALNP-GAVYVDTTS-SHPALAREIFKVARE---RDCWAVDAPVSGG 50 (220)
Q Consensus 10 ~~~~-g~~ivd~ST-~~p~~~~~la~~~~~---~G~~~ldapV~g~ 50 (220)
.+.+ -++.||... -+++++.++.+.+.+ .++.|++-|+...
T Consensus 150 ~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~~~~ 195 (307)
T TIGR01927 150 ALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDA 195 (307)
T ss_pred HcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCCCCH
Confidence 3434 478999954 889999999999987 7899999999543
No 250
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=20.36 E-value=1.4e+02 Score=21.81 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=33.4
Q ss_pred CCccchhhcCCCC--CEEEecCCCCHHHHHHHHHHHHhcCCcEEE
Q 044696 2 LDPDGIVSALNPG--AVYVDTTSSHPALAREIFKVARERDCWAVD 44 (220)
Q Consensus 2 ~g~~gi~~~~~~g--~~ivd~ST~~p~~~~~la~~~~~~G~~~ld 44 (220)
.|.+.++..++.| ..||-.+..++.+.+++...+...++.++.
T Consensus 28 ~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~ 72 (108)
T PTZ00106 28 LGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHH 72 (108)
T ss_pred ecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEE
Confidence 4666677776654 568888999999999999999988876653
No 251
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=20.31 E-value=1.5e+02 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCHHHHHHHHhccCC
Q 044696 113 GLVFADEAGLDVRKWRDAVKGGAA 136 (220)
Q Consensus 113 a~~la~~~Gl~~~~~~~~l~~~~~ 136 (220)
...+++++|+++.+++.+++.+..
T Consensus 32 ~~eFak~anIP~StLYKil~G~dp 55 (170)
T COG4800 32 PSEFAKRANIPLSTLYKILKGSDP 55 (170)
T ss_pred HHHHHHHcCCCHHHHHHHHhCCCc
Confidence 357899999999999999997543
No 252
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.29 E-value=1.5e+02 Score=25.59 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=54.2
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCcEEEecCCCChHH----hhccceeEEecCCHHh--------HHHHHHHHHH
Q 044696 12 NPGAVYVDTTSSHPALAREIFKVARERDCWAVDAPVSGGDIG----ARDGKLAIFAAGDSAV--------VQWLTPLFEV 79 (220)
Q Consensus 12 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ldapV~g~~~~----a~~g~l~i~~gG~~~~--------~~~~~~~l~~ 79 (220)
.++-++||+| .|+.+.+..+.+.++|+.+|-+---..... .++....++++.+-.. .+.+..+|..
T Consensus 79 ~~~~VvIDFT--~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~~ 156 (286)
T PLN02775 79 YPNLIVVDYT--LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFPG 156 (286)
T ss_pred CCCEEEEECC--ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccc
Confidence 4555999999 699999999999999998887654333332 2344667788776532 1223333322
Q ss_pred ----hcc----ceecC--CCCHHHHHHHHHH
Q 044696 80 ----LGK----PTFMG--GAGCGQSCKIANQ 100 (220)
Q Consensus 80 ----~~~----~~~~G--~~G~a~~~Kl~~n 100 (220)
+-- .+|-. +. +|++++++..
T Consensus 157 ~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~ 186 (286)
T PLN02775 157 AFSGYTLEVVESHQATKLDT-SGTAKAVISS 186 (286)
T ss_pred ccCCCCEEEEECCCCCCCCC-cHHHHHHHHH
Confidence 101 34445 36 8888887654
No 253
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.26 E-value=4.2e+02 Score=23.65 Aligned_cols=41 Identities=5% Similarity=0.008 Sum_probs=30.5
Q ss_pred CCCCEEEecC--CCCHHHHHHHHHHHHhcCCcEEEecCCCChH
Q 044696 12 NPGAVYVDTT--SSHPALAREIFKVARERDCWAVDAPVSGGDI 52 (220)
Q Consensus 12 ~~g~~ivd~S--T~~p~~~~~la~~~~~~G~~~ldapV~g~~~ 52 (220)
+.|.-+-|-. +.+|+...-.++.+.+.|+++|-.+..+.+.
T Consensus 201 pRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~ 243 (348)
T PRK09250 201 LRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNG 243 (348)
T ss_pred ccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChh
Confidence 4555555544 4568888888888889999999999887543
No 254
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=20.15 E-value=2.5e+02 Score=23.34 Aligned_cols=74 Identities=5% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHcCCCHHHHHHHHhccC-C--------ChHHHHhhhhhhccccCCCCchhhHHHHHHHHHHHHHhhcccCCCCCccHHH
Q 044696 118 DEAGLDVRKWRDAVKGGA-A--------GSMAMELYGERMIEKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAA 188 (220)
Q Consensus 118 ~~~Gl~~~~~~~~l~~~~-~--------~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~~~~~g~~~p~~~ 188 (220)
+..|+|++.+++-|+... . .++........|.+.-+. ...+.+..+...+...+.-||-..|-..
T Consensus 43 ~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~~~Lid~I~~~hH~------~~r~~lp~l~~l~~kV~~VHg~~~p~l~ 116 (224)
T PRK13276 43 EKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSAYHE------PLREEFKNLTPYVTKLSKVHGPNHPYLV 116 (224)
T ss_pred HHcCCCHHHHHHHHHHHhhccccCccChhhCCHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 679999999999887541 0 011122223333332211 1233333334444333333366666666
Q ss_pred HHHHHHHHH
Q 044696 189 LGKQLFSAM 197 (220)
Q Consensus 189 ~~~~~~~~a 197 (220)
.+.++|...
T Consensus 117 ~l~~lf~~l 125 (224)
T PRK13276 117 ELKETYDTF 125 (224)
T ss_pred HHHHHHHHH
Confidence 777776543
No 255
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.14 E-value=7.3e+02 Score=23.31 Aligned_cols=102 Identities=9% Similarity=-0.005 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCCCC-hHHh-------hc------------cceeEEecCCHHhHHHHHHHHHHhc
Q 044696 22 SSHPALAREIFKVARERDCWAVDAPVSGG-DIGA-------RD------------GKLAIFAAGDSAVVQWLTPLFEVLG 81 (220)
Q Consensus 22 T~~p~~~~~la~~~~~~G~~~ldapV~g~-~~~a-------~~------------g~l~i~~gG~~~~~~~~~~~l~~~~ 81 (220)
..++++..++++.+.+.|+.++++-.-.. +... .. ..+..+.-..++.++++...+..-+
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~ 181 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAK 181 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccC
Confidence 36789999999999999999999944222 2221 10 1111222233333444333322212
Q ss_pred c-ceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044696 82 K-PTFMGGAGCGQSCKIANQIVVGANLLGLSEGLVFADEAGLD 123 (220)
Q Consensus 82 ~-~~~~G~~G~a~~~Kl~~n~~~~~~~~~~aEa~~la~~~Gl~ 123 (220)
. .+++--+-+-.-+|--.|.-.--.+..+.|++.+++..|+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~ 224 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFH 224 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 2 33332222223333333444455677788899999988864
Done!