BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044700
(795 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 26/191 (13%)
Query: 512 SFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLL---DQSRTTLRALDLSGQSWYENMT 568
+ P S++ + LR L I + C ++E LP+ L D S ++L
Sbjct: 141 ALPASIASLNRLRELSI----RACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 569 IKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINL 628
+PA I NL+ L+ L + ++ L + L L+ L+L CT L P G L
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 629 EHL-LNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSL 687
+ L L ++L ++P +I RLT +LE D RG LSRL L
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLT-----------QLEKLDLRGCVN------LSRLPSLIA 298
Query: 688 KDWTNCEQLAP 698
+ NC L P
Sbjct: 299 QLPANCIILVP 309
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 488 VDGNFEKPRRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEV--LPKL 545
D + E V L L L + S P S++ +QNL+SL+I+ S +L + LPKL
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKL 231
Query: 546 LDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQ 605
+ LDL G + N P G R + + LP ++ L L+
Sbjct: 232 EE--------LDLRGCTALRNYP---PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 606 TLELNWCTNLETLPQGMGKL 625
L+L C NL LP + +L
Sbjct: 281 KLDLRGCVNLSRLPSLIAQL 300
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 553 LRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWC 612
L L L+G S E +PAEI NL LR L+LS ++ LP EL + L+ +
Sbjct: 249 LTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF-FD 302
Query: 613 TNLETLPQGMGKLINLEHLLNVGTSL 638
+ TLP G L NL+ L G L
Sbjct: 303 NMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 541 VLPKLLDQSRTTLRALDLSGQSWYENMTI-KIPAEIGNLEFLRYLNLSLLKIAELPEELC 599
V+PK ALDLS N+ I I A I +FL L L+ + ELP E+
Sbjct: 214 VMPKDSKYDDQLWHALDLS------NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK 267
Query: 600 GLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRL 651
L NL+ L+L+ L +LP +G L++ + ++P E L L
Sbjct: 268 NLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 564 YENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMG 623
+ N +P L+ L + L + LP ELC LW N T+L LP G+
Sbjct: 129 FGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN----NQLTSLPMLPSGLQ 184
Query: 624 KLINLEHLLNVGTSLASMPKEIERL----TRLSAQP--PEYLMRLEIRDYRGSTFPSWID 677
+L ++ L SL ++P E+ +L RL++ P P L L + R ++ P
Sbjct: 185 ELSVSDNQL---ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS 241
Query: 678 LLSRLTILSLKDWTNCEQLAPLGNLPS-LESLSLF 711
L L + + +L L LPS L SLS++
Sbjct: 242 ELKELMV-------SGNRLTSLPMLPSGLLSLSVY 269
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 646 ERLTRLSAQPPEYLMRLEIRDYRGST-FPSWIDLLSRLTILSLKDWTNCEQ---LAPLGN 701
ER+ ++ +P + L + D RG T P +ID + + N Q LA + +
Sbjct: 32 ERIVEVTDRPVD-LPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQPNILAAIRS 90
Query: 702 LPSLESLSLFSMGSVRKVGNE----FLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECE 757
LP L+++ SVR G +++G+ S FP K+L GD+
Sbjct: 91 LPILDAMLSRGFTSVRDAGGADWSLMQAVETGLVSGPRIFPSGKALS--QTGGHGDFRPR 148
Query: 758 MANVMPCLC 766
+ PC C
Sbjct: 149 GDLLEPCSC 157
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 646 ERLTRLSAQPPEYLMRLEIRDYRGST-FPSWIDLLSRLTILSLKDWTNCEQ---LAPLGN 701
ER+ ++ +P + L + D RG T P +ID + + N Q LA + +
Sbjct: 32 ERIVEVTDRPVD-LPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQPNILAAIRS 90
Query: 702 LPSLESLSLFSMGSVRKVGNE----FLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECE 757
LP L+++ SVR G +++G+ S FP K+L GD+
Sbjct: 91 LPILDAMLSRGFTSVRDAGGADWSLMQAVETGLVSGPRIFPSGKALS--QTGGHGDFRPR 148
Query: 758 MANVMPCLC 766
+ PC C
Sbjct: 149 GDLLEPCSC 157
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 34/144 (23%)
Query: 541 VLPKLLDQSRTTLRALDLSGQSW--------------------YENMTIKIPAEIGNLEF 580
+LP L + TL+ L L + + ++ IP+ +G+L
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 581 LRYLNLSLLKI-AELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA 639
LR L L L + E+P+EL + L+TL L++ +P G+ NL + SL+
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-----SLS 495
Query: 640 SMPKEIERLTRLSAQPPEYLMRLE 663
+ RL+ + P+++ RLE
Sbjct: 496 N--------NRLTGEIPKWIGRLE 511
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 519 EVQNLRSLRIQYGS--KTCSLISEVLPKLLD---QSRTTLRALDLSGQSWYENMTIKIPA 573
E Q +RS ++ S C++ S V + ++ LD+S Y ++ IP
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS----YNMLSGYIPK 647
Query: 574 EIGNLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLL 632
EIG++ +L LNL I+ +P+E+ L L L+L+ +PQ M L L
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE-- 705
Query: 633 NVGTSLASMPKEIERLTRLSAQPPEYLMR 661
+ S ++ I + + PP +
Sbjct: 706 -IDLSNNNLSGPIPEMGQFETFPPAKFLN 733
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 34/144 (23%)
Query: 541 VLPKLLDQSRTTLRALDLSGQSW--------------------YENMTIKIPAEIGNLEF 580
+LP L + TL+ L L + + ++ IP+ +G+L
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 581 LRYLNLSLLKI-AELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA 639
LR L L L + E+P+EL + L+TL L++ +P G+ NL + SL+
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-----SLS 498
Query: 640 SMPKEIERLTRLSAQPPEYLMRLE 663
+ RL+ + P+++ RLE
Sbjct: 499 N--------NRLTGEIPKWIGRLE 514
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 548 QSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA-ELPEELCGLWNLQT 606
+ ++ LD+S Y ++ IP EIG++ +L LNL I+ +P+E+ L L
Sbjct: 629 DNNGSMMFLDMS----YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 607 LELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMR 661
L+L+ +PQ M L L + S ++ I + + PP +
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTE---IDLSNNNLSGPIPEMGQFETFPPAKFLN 736
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 253 RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI-GSTENIRRASDEA 311
R +L++DDVW +W L+ +IL+TT D+S+ D + G + S
Sbjct: 237 RSLLILDDVW----DSW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 312 SWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357
E + F + + L I+++C PL++ ++G L
Sbjct: 288 KEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALL 331
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 253 RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI-GSTENIRRASDEA 311
R +L++DDVW W L+ +IL+TT D+S+ D + G + S
Sbjct: 244 RSLLILDDVW----DPW-----VLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLG 294
Query: 312 SWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357
E + F + +E L I+++C PL++ ++G L
Sbjct: 295 REKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALL 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 253 RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI-GSTENIRRASDEA 311
R +L++DDVW W L+ +IL+TT D+S+ D + G + S
Sbjct: 237 RSLLILDDVW----DPW-----VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 312 SWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357
E + F + +E L I+++C PL++ ++G L
Sbjct: 288 REKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALL 331
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 253 RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI-GSTENIRRASDEA 311
R +L++DDVW +W L+ +IL+TT D+S+ D + G + S
Sbjct: 243 RSLLILDDVW----DSW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 312 SWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357
E + F + + L I+++C PL++ ++G L
Sbjct: 294 KEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALL 337
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 575 IGNLEFLRYLNLS--LLKIAELPEELCGLWNLQTLELN-------WCTNLETLPQ 620
IG+L+ L+ LN++ L++ +LPE L NL+ L+L+ +CT+L L Q
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 575 IGNLEFLRYLNLS--LLKIAELPEELCGLWNLQTLELN-------WCTNLETLPQ 620
IG+L+ L+ LN++ L++ +LPE L NL+ L+L+ +CT+L L Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 575 IGNLEFLRYLNLS--LLKIAELPEELCGLWNLQTLELN-------WCTNLETLPQ 620
IG+L+ L+ LN++ L++ +LPE L NL+ L+L+ +CT+L L Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,370,210
Number of Sequences: 62578
Number of extensions: 872776
Number of successful extensions: 2211
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2182
Number of HSP's gapped (non-prelim): 32
length of query: 795
length of database: 14,973,337
effective HSP length: 107
effective length of query: 688
effective length of database: 8,277,491
effective search space: 5694913808
effective search space used: 5694913808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)