Query 044700
Match_columns 795
No_of_seqs 542 out of 3943
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.5E-86 1.2E-90 764.3 43.6 744 5-791 25-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-63 2.8E-68 610.8 45.2 643 92-779 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-44 5.5E-49 378.8 10.8 276 151-430 1-283 (287)
4 KOG0444 Cytoskeletal regulator 99.8 4.1E-22 8.9E-27 209.6 -3.6 271 496-782 53-357 (1255)
5 PLN00113 leucine-rich repeat r 99.8 6.5E-20 1.4E-24 225.8 13.2 269 498-778 140-442 (968)
6 PLN00113 leucine-rich repeat r 99.8 2.5E-19 5.3E-24 220.7 15.7 273 498-781 164-470 (968)
7 KOG4194 Membrane glycoprotein 99.8 2.2E-19 4.9E-24 188.4 4.6 280 498-793 102-425 (873)
8 KOG0444 Cytoskeletal regulator 99.7 1.8E-19 3.9E-24 189.9 -0.7 163 593-778 213-377 (1255)
9 PLN03210 Resistant to P. syrin 99.7 5.6E-17 1.2E-21 200.1 20.5 299 470-781 489-843 (1153)
10 KOG4194 Membrane glycoprotein 99.7 3.2E-18 6.8E-23 179.8 3.0 250 496-773 171-426 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 1.7E-19 3.7E-24 181.5 -7.4 258 497-790 44-301 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.4E-18 7.4E-23 172.2 -5.2 266 496-781 181-544 (565)
13 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 147.5 -3.0 185 515-719 27-215 (264)
14 KOG0618 Serine/threonine phosp 99.6 5.9E-17 1.3E-21 179.4 -1.5 266 500-781 23-424 (1081)
15 PRK15370 E3 ubiquitin-protein 99.5 1.7E-14 3.7E-19 166.6 10.1 226 497-774 198-426 (754)
16 KOG0617 Ras suppressor protein 99.5 3.7E-16 7.9E-21 139.8 -4.0 162 497-679 32-195 (264)
17 PRK15370 E3 ubiquitin-protein 99.5 3.8E-14 8.2E-19 163.7 9.6 228 500-783 180-407 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.5E-18 158.6 13.0 219 497-774 221-456 (788)
19 PRK15387 E3 ubiquitin-protein 99.4 4.8E-13 1E-17 153.6 12.8 209 496-750 240-457 (788)
20 PRK04841 transcriptional regul 99.4 2.6E-11 5.6E-16 148.9 22.3 293 146-479 14-332 (903)
21 PRK00411 cdc6 cell division co 99.4 7.7E-11 1.7E-15 129.9 23.0 293 146-451 30-358 (394)
22 KOG0618 Serine/threonine phosp 99.3 9.6E-14 2.1E-18 154.3 -2.3 252 497-776 218-489 (1081)
23 TIGR03015 pepcterm_ATPase puta 99.3 6.4E-10 1.4E-14 115.8 23.4 181 168-357 42-242 (269)
24 TIGR02928 orc1/cdc6 family rep 99.2 1.1E-09 2.5E-14 119.3 23.9 296 146-451 15-350 (365)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.1E-12 2.4E-17 140.4 -0.1 58 581-638 110-177 (319)
26 KOG4237 Extracellular matrix p 99.2 1.8E-12 3.9E-17 131.3 -1.9 131 496-637 65-199 (498)
27 cd00116 LRR_RI Leucine-rich re 99.2 5E-12 1.1E-16 135.4 0.4 245 514-778 16-292 (319)
28 KOG4237 Extracellular matrix p 99.1 3.2E-12 6.9E-17 129.5 -1.9 243 508-774 56-357 (498)
29 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4E-17 136.9 -4.1 191 500-713 77-270 (722)
30 PF01637 Arch_ATPase: Archaeal 99.1 3.7E-10 7.9E-15 114.9 12.5 197 148-352 1-233 (234)
31 COG2909 MalT ATP-dependent tra 99.1 6.2E-09 1.4E-13 116.5 20.2 297 146-480 19-339 (894)
32 KOG4658 Apoptotic ATPase [Sign 99.1 6.5E-11 1.4E-15 139.3 4.8 234 517-779 519-786 (889)
33 KOG0532 Leucine-rich repeat (L 99.1 8.2E-12 1.8E-16 132.1 -2.7 172 520-714 74-245 (722)
34 PRK00080 ruvB Holliday junctio 99.1 3.4E-09 7.3E-14 113.2 17.1 275 146-451 25-310 (328)
35 TIGR00635 ruvB Holliday juncti 99.0 1.2E-08 2.6E-13 108.2 19.0 267 146-451 4-289 (305)
36 KOG3207 Beta-tubulin folding c 99.0 6.7E-11 1.5E-15 121.7 1.4 203 497-714 120-337 (505)
37 PF14580 LRR_9: Leucine-rich r 98.9 6.5E-10 1.4E-14 105.0 3.0 124 552-712 20-149 (175)
38 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.5E-14 120.7 4.9 148 552-714 141-288 (394)
39 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.5E-13 97.8 11.2 142 170-320 1-163 (166)
40 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.4E-14 118.0 6.7 176 550-752 115-291 (394)
41 KOG1259 Nischarin, modulator o 98.9 5.8E-10 1.3E-14 109.1 1.3 101 601-712 283-383 (490)
42 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 100.3 5.7 111 517-641 15-128 (175)
43 PTZ00112 origin recognition co 98.8 1.1E-07 2.5E-12 107.3 18.3 210 145-357 754-986 (1164)
44 PRK06893 DNA replication initi 98.8 6.2E-08 1.4E-12 97.5 14.9 151 168-353 38-203 (229)
45 KOG1259 Nischarin, modulator o 98.8 5.1E-10 1.1E-14 109.5 -0.4 129 575-714 280-410 (490)
46 PRK13342 recombination factor 98.8 5.1E-08 1.1E-12 107.4 13.7 174 146-353 12-196 (413)
47 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.9E-14 112.3 0.3 190 510-714 110-312 (505)
48 KOG1909 Ran GTPase-activating 98.7 1.3E-09 2.9E-14 109.5 -3.1 245 516-776 25-310 (382)
49 PF13401 AAA_22: AAA domain; P 98.6 9.5E-08 2.1E-12 87.4 8.4 118 168-291 3-125 (131)
50 PRK14961 DNA polymerase III su 98.6 1.3E-06 2.8E-11 94.4 18.4 193 146-350 16-217 (363)
51 PTZ00202 tuzin; Provisional 98.6 5.2E-06 1.1E-10 87.5 21.5 163 146-319 262-433 (550)
52 PRK05564 DNA polymerase III su 98.6 1.2E-06 2.6E-11 92.9 17.2 178 146-353 4-190 (313)
53 COG3899 Predicted ATPase [Gene 98.6 4.6E-07 9.9E-12 107.5 15.1 288 147-449 1-355 (849)
54 PF13173 AAA_14: AAA domain 98.6 1.2E-07 2.6E-12 86.1 7.8 118 169-312 2-127 (128)
55 cd00009 AAA The AAA+ (ATPases 98.6 5.6E-07 1.2E-11 83.9 12.3 125 149-293 1-131 (151)
56 PRK12402 replication factor C 98.6 1.1E-06 2.5E-11 94.7 16.3 193 146-351 15-224 (337)
57 COG2256 MGS1 ATPase related to 98.6 3E-07 6.5E-12 94.9 10.9 157 158-347 39-206 (436)
58 TIGR03420 DnaA_homol_Hda DnaA 98.6 1E-06 2.2E-11 89.1 14.7 167 151-354 22-202 (226)
59 PRK12323 DNA polymerase III su 98.6 1.5E-06 3.2E-11 96.9 16.6 178 146-353 16-225 (700)
60 PRK14960 DNA polymerase III su 98.6 1.7E-06 3.6E-11 96.7 16.9 176 146-351 15-217 (702)
61 PRK14949 DNA polymerase III su 98.6 1.7E-06 3.7E-11 99.7 17.3 181 146-353 16-220 (944)
62 PRK07003 DNA polymerase III su 98.6 1.6E-06 3.5E-11 97.9 16.7 177 146-352 16-220 (830)
63 PF13191 AAA_16: AAA ATPase do 98.6 1.3E-07 2.8E-12 92.3 7.1 47 147-193 1-48 (185)
64 PRK06645 DNA polymerase III su 98.5 3.1E-06 6.7E-11 94.0 18.2 196 146-350 21-226 (507)
65 PRK14957 DNA polymerase III su 98.5 3E-06 6.6E-11 94.7 17.4 181 146-353 16-221 (546)
66 PF05496 RuvB_N: Holliday junc 98.5 1.9E-06 4.1E-11 83.3 13.7 176 146-357 24-225 (233)
67 COG3903 Predicted ATPase [Gene 98.5 3E-07 6.6E-12 95.6 8.7 268 168-451 13-292 (414)
68 PRK14963 DNA polymerase III su 98.5 3.2E-06 7E-11 94.3 17.3 193 146-350 14-214 (504)
69 TIGR02903 spore_lon_C ATP-depe 98.5 1.7E-06 3.8E-11 99.3 15.1 205 146-356 154-398 (615)
70 PLN03025 replication factor C 98.5 3.5E-06 7.6E-11 89.6 16.3 178 146-348 13-195 (319)
71 PRK00440 rfc replication facto 98.4 6.6E-06 1.4E-10 88.0 17.5 177 146-349 17-199 (319)
72 cd01128 rho_factor Transcripti 98.4 2.7E-07 5.9E-12 93.0 6.3 93 168-261 15-112 (249)
73 PRK08691 DNA polymerase III su 98.4 5.3E-06 1.1E-10 93.7 16.7 176 146-351 16-218 (709)
74 PLN03150 hypothetical protein; 98.4 4.5E-07 9.8E-12 105.0 8.5 83 553-639 420-503 (623)
75 PRK14962 DNA polymerase III su 98.4 9.1E-06 2E-10 90.0 18.1 198 146-370 14-240 (472)
76 PRK14956 DNA polymerase III su 98.4 2.4E-06 5.2E-11 92.9 13.1 196 146-349 18-218 (484)
77 PRK13341 recombination factor 98.4 3.3E-06 7.1E-11 97.9 14.9 169 146-347 28-211 (725)
78 KOG2120 SCF ubiquitin ligase, 98.4 6E-09 1.3E-13 102.2 -6.3 158 577-749 208-374 (419)
79 PRK14951 DNA polymerase III su 98.4 8E-06 1.7E-10 92.6 17.3 198 146-352 16-224 (618)
80 PRK07994 DNA polymerase III su 98.4 6.4E-06 1.4E-10 93.5 16.6 196 146-353 16-220 (647)
81 PRK14964 DNA polymerase III su 98.4 1E-05 2.2E-10 89.2 17.7 179 146-350 13-214 (491)
82 PRK14958 DNA polymerase III su 98.4 1E-05 2.2E-10 90.6 17.4 179 146-350 16-217 (509)
83 PRK07940 DNA polymerase III su 98.4 9.4E-06 2E-10 87.7 16.4 189 146-354 5-214 (394)
84 TIGR02397 dnaX_nterm DNA polym 98.4 1.9E-05 4E-10 85.9 18.9 181 146-353 14-218 (355)
85 PRK08727 hypothetical protein; 98.4 9E-06 1.9E-10 82.1 15.1 168 146-350 19-201 (233)
86 PRK05896 DNA polymerase III su 98.4 1E-05 2.2E-10 90.6 16.6 197 146-354 16-222 (605)
87 TIGR00678 holB DNA polymerase 98.4 1.2E-05 2.7E-10 78.5 15.5 89 251-349 95-187 (188)
88 PRK04195 replication factor C 98.4 2.2E-05 4.7E-10 88.5 19.5 176 146-351 14-200 (482)
89 PLN03150 hypothetical protein; 98.3 7.1E-07 1.5E-11 103.4 7.6 106 522-637 419-526 (623)
90 PF13855 LRR_8: Leucine rich r 98.3 4E-07 8.6E-12 70.6 3.8 56 552-612 2-59 (61)
91 PRK09112 DNA polymerase III su 98.3 1.9E-05 4.1E-10 84.2 17.6 196 146-354 23-241 (351)
92 COG1474 CDC6 Cdc6-related prot 98.3 2.4E-05 5.3E-10 83.7 18.2 170 146-321 17-204 (366)
93 PRK07471 DNA polymerase III su 98.3 2.3E-05 5.1E-10 84.0 17.8 193 146-354 19-239 (365)
94 PRK14955 DNA polymerase III su 98.3 1.3E-05 2.9E-10 87.6 16.2 196 146-350 16-225 (397)
95 PRK15386 type III secretion pr 98.3 3E-06 6.4E-11 90.0 10.4 61 550-620 51-112 (426)
96 PRK09376 rho transcription ter 98.3 1.3E-06 2.8E-11 91.7 7.2 98 158-261 159-265 (416)
97 KOG4341 F-box protein containi 98.3 3.9E-08 8.5E-13 101.2 -4.1 256 517-790 160-458 (483)
98 PRK09087 hypothetical protein; 98.3 4.9E-05 1.1E-09 76.1 17.4 157 168-370 43-220 (226)
99 PRK14969 DNA polymerase III su 98.3 2.7E-05 5.9E-10 87.8 17.4 175 146-350 16-217 (527)
100 KOG1909 Ran GTPase-activating 98.2 2.7E-07 5.9E-12 93.2 0.9 224 544-777 24-283 (382)
101 PRK14952 DNA polymerase III su 98.2 4.3E-05 9.4E-10 86.4 17.9 197 146-354 13-221 (584)
102 PRK09111 DNA polymerase III su 98.2 3.7E-05 8.1E-10 87.4 17.4 198 146-352 24-232 (598)
103 PRK14959 DNA polymerase III su 98.2 4E-05 8.7E-10 86.3 17.4 199 146-357 16-225 (624)
104 PRK14970 DNA polymerase III su 98.2 4.1E-05 8.9E-10 83.4 16.8 177 146-348 17-204 (367)
105 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 66.8 4.5 59 579-638 1-61 (61)
106 PRK07764 DNA polymerase III su 98.2 4.1E-05 8.8E-10 90.1 17.4 192 146-349 15-217 (824)
107 PRK08903 DnaA regulatory inact 98.2 3.6E-05 7.8E-10 77.7 15.0 171 147-357 19-203 (227)
108 PRK08084 DNA replication initi 98.2 3.1E-05 6.7E-10 78.3 14.3 168 147-351 24-207 (235)
109 PRK07133 DNA polymerase III su 98.2 5.8E-05 1.3E-09 86.4 17.4 188 146-350 18-216 (725)
110 PRK14950 DNA polymerase III su 98.2 7.1E-05 1.5E-09 86.0 18.4 196 146-352 16-220 (585)
111 PRK14954 DNA polymerase III su 98.1 6.9E-05 1.5E-09 85.4 17.1 198 146-348 16-223 (620)
112 PHA02544 44 clamp loader, smal 98.1 7.9E-05 1.7E-09 79.5 16.8 146 146-318 21-171 (316)
113 KOG2543 Origin recognition com 98.1 0.00017 3.7E-09 74.3 17.5 169 146-319 6-192 (438)
114 PF00308 Bac_DnaA: Bacterial d 98.1 8.6E-05 1.9E-09 74.0 15.3 177 148-350 11-205 (219)
115 PRK14953 DNA polymerase III su 98.1 0.00014 2.9E-09 81.2 18.3 181 146-353 16-220 (486)
116 PRK14971 DNA polymerase III su 98.1 0.00011 2.4E-09 84.2 17.9 178 146-350 17-219 (614)
117 KOG2028 ATPase related to the 98.1 1.5E-05 3.2E-10 80.9 9.3 173 147-347 139-330 (554)
118 KOG1859 Leucine-rich repeat pr 98.1 1.7E-07 3.7E-12 102.5 -4.9 124 580-714 165-290 (1096)
119 TIGR01242 26Sp45 26S proteasom 98.1 1.1E-05 2.3E-10 87.7 8.7 173 146-347 122-328 (364)
120 TIGR00767 rho transcription te 98.1 1.3E-05 2.8E-10 84.8 8.9 94 168-262 167-265 (415)
121 PRK06305 DNA polymerase III su 98.1 8.7E-05 1.9E-09 82.2 15.8 175 146-348 17-217 (451)
122 PRK08451 DNA polymerase III su 98.0 0.00018 4E-09 80.2 18.0 178 146-353 14-218 (535)
123 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.4E-12 93.5 -6.4 176 580-773 186-373 (419)
124 PRK05642 DNA replication initi 98.0 9.4E-05 2E-09 74.7 14.5 150 169-353 45-208 (234)
125 KOG2982 Uncharacterized conser 98.0 1.9E-06 4.1E-11 85.1 1.9 193 546-757 66-268 (418)
126 CHL00181 cbbX CbbX; Provisiona 98.0 0.00027 5.8E-09 73.5 18.0 157 146-322 23-211 (287)
127 PRK14087 dnaA chromosomal repl 98.0 0.00015 3.2E-09 80.4 16.5 186 147-354 117-320 (450)
128 PRK14965 DNA polymerase III su 98.0 0.00019 4.1E-09 82.1 17.8 196 146-353 16-221 (576)
129 KOG0989 Replication factor C, 98.0 6.2E-05 1.4E-09 75.3 11.9 181 146-347 36-224 (346)
130 PRK06647 DNA polymerase III su 98.0 0.00024 5.2E-09 80.5 18.1 194 146-351 16-218 (563)
131 TIGR03345 VI_ClpV1 type VI sec 98.0 8.2E-05 1.8E-09 88.7 14.5 45 146-192 187-231 (852)
132 PRK14948 DNA polymerase III su 98.0 0.00029 6.2E-09 80.9 18.2 198 146-353 16-222 (620)
133 KOG2227 Pre-initiation complex 98.0 0.00011 2.3E-09 77.7 13.3 173 145-321 149-339 (529)
134 TIGR02880 cbbX_cfxQ probable R 97.9 0.00043 9.3E-09 72.0 17.2 155 147-321 23-209 (284)
135 PRK11331 5-methylcytosine-spec 97.9 3E-05 6.5E-10 83.5 8.7 121 146-277 175-298 (459)
136 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.4E-11 95.1 -0.1 110 515-639 89-199 (414)
137 PF05621 TniB: Bacterial TniB 97.9 0.00033 7.2E-09 71.3 15.6 201 146-351 34-259 (302)
138 TIGR02881 spore_V_K stage V sp 97.9 0.00019 4.1E-09 74.0 13.7 156 146-321 6-192 (261)
139 PRK05563 DNA polymerase III su 97.9 0.00059 1.3E-08 77.7 18.6 193 146-350 16-217 (559)
140 PRK03992 proteasome-activating 97.9 8.4E-05 1.8E-09 81.0 11.3 152 146-321 131-316 (389)
141 PRK15386 type III secretion pr 97.9 7.6E-05 1.7E-09 79.5 10.2 137 517-690 48-187 (426)
142 KOG4341 F-box protein containi 97.8 7.5E-07 1.6E-11 92.0 -4.7 255 522-794 139-439 (483)
143 KOG2982 Uncharacterized conser 97.8 1.2E-05 2.5E-10 79.6 3.4 201 502-711 49-287 (418)
144 TIGR02639 ClpA ATP-dependent C 97.8 0.00016 3.5E-09 85.6 13.7 154 146-320 182-358 (731)
145 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 55.7 3.8 33 580-612 2-34 (44)
146 KOG1859 Leucine-rich repeat pr 97.8 2.9E-07 6.3E-12 100.8 -8.6 107 575-693 183-292 (1096)
147 PF05673 DUF815: Protein of un 97.8 0.0013 2.9E-08 64.8 17.2 119 146-294 27-153 (249)
148 PRK07399 DNA polymerase III su 97.8 0.00044 9.6E-09 72.7 14.8 196 146-352 4-220 (314)
149 PRK05707 DNA polymerase III su 97.8 0.00073 1.6E-08 71.5 16.2 95 251-353 105-203 (328)
150 KOG0531 Protein phosphatase 1, 97.8 3.9E-06 8.4E-11 92.9 -1.2 192 550-773 71-265 (414)
151 TIGR00362 DnaA chromosomal rep 97.7 0.00074 1.6E-08 74.5 16.4 176 148-349 113-306 (405)
152 PF14516 AAA_35: AAA-like doma 97.7 0.0023 5E-08 68.2 19.1 202 146-360 11-246 (331)
153 PRK14088 dnaA chromosomal repl 97.7 0.001 2.3E-08 73.6 17.0 174 148-347 108-299 (440)
154 PRK08116 hypothetical protein; 97.7 0.00028 6.1E-09 72.6 11.6 103 170-291 115-220 (268)
155 COG5238 RNA1 Ran GTPase-activa 97.7 1.2E-05 2.6E-10 78.5 1.2 248 516-778 25-317 (388)
156 PRK06620 hypothetical protein; 97.7 0.00051 1.1E-08 68.2 12.6 131 170-348 45-184 (214)
157 CHL00095 clpC Clp protease ATP 97.7 0.00045 9.7E-09 82.9 14.3 153 146-319 179-353 (821)
158 PRK12422 chromosomal replicati 97.7 0.0006 1.3E-08 75.3 14.0 151 169-345 141-305 (445)
159 KOG4579 Leucine-rich repeat (L 97.6 2.7E-06 6E-11 74.4 -3.6 59 580-639 78-136 (177)
160 PF12799 LRR_4: Leucine Rich r 97.6 5.4E-05 1.2E-09 53.7 3.6 40 602-642 1-40 (44)
161 PRK14086 dnaA chromosomal repl 97.6 0.0019 4E-08 72.9 17.4 153 169-347 314-482 (617)
162 smart00382 AAA ATPases associa 97.6 0.00042 9.1E-09 63.7 10.3 89 169-265 2-91 (148)
163 COG2255 RuvB Holliday junction 97.6 0.00032 7E-09 69.5 9.6 174 146-355 26-225 (332)
164 PTZ00361 26 proteosome regulat 97.6 0.00023 4.9E-09 77.9 9.5 151 146-320 183-367 (438)
165 COG1373 Predicted ATPase (AAA+ 97.6 0.00084 1.8E-08 73.2 13.9 240 151-451 22-270 (398)
166 PRK00149 dnaA chromosomal repl 97.6 0.00074 1.6E-08 75.5 13.8 198 148-371 125-348 (450)
167 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 6.8E-10 89.5 2.9 133 496-639 120-263 (699)
168 PRK11034 clpA ATP-dependent Cl 97.6 0.00087 1.9E-08 78.5 14.6 155 146-320 186-362 (758)
169 KOG3665 ZYG-1-like serine/thre 97.5 1.7E-05 3.6E-10 91.8 -0.3 110 520-637 121-231 (699)
170 TIGR03689 pup_AAA proteasome A 97.5 0.00047 1E-08 76.5 10.9 159 146-320 182-378 (512)
171 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0013 2.8E-08 79.2 15.2 45 146-192 173-217 (852)
172 TIGR00602 rad24 checkpoint pro 97.5 0.00057 1.2E-08 78.0 11.3 47 146-192 84-133 (637)
173 PF00004 AAA: ATPase family as 97.5 0.00014 3.1E-09 66.2 5.4 21 172-192 1-21 (132)
174 COG0593 DnaA ATPase involved i 97.5 0.0024 5.3E-08 68.3 15.3 136 168-324 112-261 (408)
175 PRK08058 DNA polymerase III su 97.5 0.0021 4.5E-08 68.5 15.0 162 146-318 5-180 (329)
176 KOG0991 Replication factor C, 97.5 0.00078 1.7E-08 64.6 9.9 44 146-191 27-70 (333)
177 KOG4579 Leucine-rich repeat (L 97.5 1.7E-05 3.8E-10 69.5 -1.0 113 551-674 27-140 (177)
178 PF13177 DNA_pol3_delta2: DNA 97.5 0.0017 3.7E-08 61.4 12.4 122 150-293 1-143 (162)
179 PTZ00454 26S protease regulato 97.5 0.00044 9.5E-09 75.1 9.2 151 146-320 145-329 (398)
180 PRK10865 protein disaggregatio 97.4 0.0011 2.3E-08 79.6 13.1 45 146-192 178-222 (857)
181 PRK12377 putative replication 97.4 0.00092 2E-08 67.5 10.4 102 168-290 100-204 (248)
182 PRK06871 DNA polymerase III su 97.4 0.0063 1.4E-07 64.0 16.9 175 154-350 10-200 (325)
183 TIGR02639 ClpA ATP-dependent C 97.4 0.0064 1.4E-07 72.2 18.8 119 146-279 454-580 (731)
184 PRK08769 DNA polymerase III su 97.4 0.0067 1.4E-07 63.7 16.7 184 153-354 11-209 (319)
185 PRK07952 DNA replication prote 97.4 0.0012 2.6E-08 66.5 10.7 117 154-290 84-203 (244)
186 COG3267 ExeA Type II secretory 97.4 0.0085 1.9E-07 59.0 15.9 181 168-355 50-247 (269)
187 KOG1644 U2-associated snRNP A' 97.4 0.00027 5.8E-09 66.5 5.3 35 678-712 111-149 (233)
188 CHL00176 ftsH cell division pr 97.4 0.0011 2.3E-08 76.3 11.5 171 146-345 183-386 (638)
189 PRK10536 hypothetical protein; 97.4 0.0016 3.4E-08 65.2 11.0 133 146-290 55-211 (262)
190 PRK08118 topology modulation p 97.4 8.2E-05 1.8E-09 70.7 1.8 35 170-204 2-37 (167)
191 PRK06090 DNA polymerase III su 97.3 0.0069 1.5E-07 63.5 16.2 177 153-354 10-202 (319)
192 PRK10865 protein disaggregatio 97.3 0.0035 7.6E-08 75.3 15.6 134 146-291 568-720 (857)
193 KOG1644 U2-associated snRNP A' 97.3 0.00039 8.4E-09 65.5 5.7 82 660-749 67-151 (233)
194 PRK08181 transposase; Validate 97.3 0.00092 2E-08 68.4 8.8 101 170-292 107-209 (269)
195 PRK10787 DNA-binding ATP-depen 97.3 0.011 2.4E-07 70.0 18.3 159 146-320 322-506 (784)
196 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0042 9.1E-08 74.9 15.2 135 146-291 565-717 (852)
197 PRK09183 transposase/IS protei 97.2 0.002 4.4E-08 66.0 10.7 101 169-291 102-205 (259)
198 TIGR00763 lon ATP-dependent pr 97.2 0.0075 1.6E-07 72.0 17.0 46 146-191 320-369 (775)
199 TIGR01241 FtsH_fam ATP-depende 97.2 0.004 8.8E-08 70.5 14.0 172 146-346 55-259 (495)
200 PRK13531 regulatory ATPase Rav 97.2 0.0017 3.7E-08 70.9 10.3 151 146-319 20-193 (498)
201 PRK07993 DNA polymerase III su 97.2 0.011 2.5E-07 62.7 16.4 180 153-353 9-204 (334)
202 PRK08939 primosomal protein Dn 97.2 0.0019 4.1E-08 67.6 10.0 119 150-290 135-259 (306)
203 TIGR02640 gas_vesic_GvpN gas v 97.2 0.011 2.3E-07 61.0 15.5 56 153-217 9-64 (262)
204 PF01695 IstB_IS21: IstB-like 97.2 0.00049 1.1E-08 66.1 5.0 100 168-290 46-148 (178)
205 COG0466 Lon ATP-dependent Lon 97.2 0.0031 6.8E-08 70.6 11.6 101 146-262 323-427 (782)
206 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0014 3.1E-08 78.3 9.5 134 146-290 566-717 (852)
207 PRK06921 hypothetical protein; 97.1 0.0011 2.5E-08 68.0 7.5 38 168-207 116-154 (266)
208 PF04665 Pox_A32: Poxvirus A32 97.1 0.00073 1.6E-08 67.2 5.5 36 170-207 14-49 (241)
209 COG5238 RNA1 Ran GTPase-activa 97.1 0.00015 3.3E-09 71.0 0.7 218 550-774 29-283 (388)
210 KOG2004 Mitochondrial ATP-depe 97.1 0.0088 1.9E-07 66.8 13.9 100 146-261 411-514 (906)
211 PRK06526 transposase; Provisio 97.1 0.0016 3.5E-08 66.3 7.8 101 169-292 98-201 (254)
212 COG0542 clpA ATP-binding subun 97.1 0.0018 3.9E-08 74.4 8.8 119 146-279 491-620 (786)
213 COG0470 HolB ATPase involved i 97.0 0.0055 1.2E-07 65.6 12.1 140 147-306 2-167 (325)
214 PRK09361 radB DNA repair and r 97.0 0.0024 5.1E-08 64.3 8.4 47 168-217 22-68 (225)
215 PRK06835 DNA replication prote 97.0 0.0054 1.2E-07 64.8 11.3 102 169-290 183-287 (329)
216 PRK04296 thymidine kinase; Pro 97.0 0.0019 4.2E-08 62.9 7.4 115 170-293 3-117 (190)
217 TIGR02902 spore_lonB ATP-depen 97.0 0.0039 8.4E-08 70.9 10.7 44 146-191 65-108 (531)
218 PF02562 PhoH: PhoH-like prote 97.0 0.0027 5.7E-08 61.8 8.0 129 150-290 4-154 (205)
219 KOG2035 Replication factor C, 97.0 0.023 5E-07 56.4 14.3 205 147-373 14-259 (351)
220 COG1223 Predicted ATPase (AAA+ 97.0 0.0062 1.3E-07 59.7 10.2 151 146-320 121-297 (368)
221 PRK07261 topology modulation p 97.0 0.002 4.3E-08 61.6 7.0 34 171-204 2-36 (171)
222 CHL00095 clpC Clp protease ATP 96.9 0.0049 1.1E-07 74.1 11.7 134 146-291 509-661 (821)
223 TIGR02237 recomb_radB DNA repa 96.9 0.0031 6.8E-08 62.7 8.4 48 168-218 11-58 (209)
224 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0025 5.4E-08 64.7 7.6 56 168-224 18-77 (235)
225 PHA02244 ATPase-like protein 96.9 0.011 2.3E-07 62.4 12.2 41 147-191 97-141 (383)
226 PRK06964 DNA polymerase III su 96.9 0.021 4.5E-07 60.6 14.5 92 251-354 131-226 (342)
227 PRK12608 transcription termina 96.9 0.0051 1.1E-07 65.1 9.7 105 154-261 119-229 (380)
228 COG2884 FtsE Predicted ATPase 96.9 0.011 2.4E-07 55.5 10.6 131 168-301 27-206 (223)
229 COG1222 RPT1 ATP-dependent 26S 96.9 0.029 6.3E-07 57.9 14.6 195 147-371 152-391 (406)
230 cd01393 recA_like RecA is a b 96.9 0.0088 1.9E-07 60.3 11.2 91 168-261 18-123 (226)
231 COG1136 SalX ABC-type antimicr 96.9 0.011 2.3E-07 58.3 11.1 134 168-304 30-215 (226)
232 KOG0741 AAA+-type ATPase [Post 96.9 0.012 2.6E-07 63.4 12.2 142 168-343 537-704 (744)
233 PF00910 RNA_helicase: RNA hel 96.8 0.0028 6.1E-08 55.3 6.5 21 172-192 1-21 (107)
234 PF14532 Sigma54_activ_2: Sigm 96.8 0.0019 4E-08 59.4 5.6 108 149-292 1-110 (138)
235 KOG2739 Leucine-rich acidic nu 96.8 0.00056 1.2E-08 67.3 1.9 65 575-640 39-105 (260)
236 TIGR01243 CDC48 AAA family ATP 96.8 0.0054 1.2E-07 73.1 10.5 173 146-347 178-381 (733)
237 KOG1514 Origin recognition com 96.8 0.039 8.5E-07 61.9 16.1 164 146-320 396-589 (767)
238 cd03214 ABC_Iron-Siderophores_ 96.8 0.017 3.6E-07 55.9 12.0 127 168-297 24-163 (180)
239 PF00158 Sigma54_activat: Sigm 96.8 0.0066 1.4E-07 57.6 8.8 133 148-292 1-144 (168)
240 PRK05541 adenylylsulfate kinas 96.8 0.0056 1.2E-07 59.0 8.5 37 168-206 6-42 (176)
241 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3.1E-07 69.5 13.6 151 146-320 453-635 (733)
242 smart00763 AAA_PrkA PrkA AAA d 96.8 0.001 2.2E-08 70.0 3.5 48 146-193 51-102 (361)
243 KOG0731 AAA+-type ATPase conta 96.7 0.017 3.7E-07 66.2 13.0 177 146-350 311-521 (774)
244 PTZ00494 tuzin-like protein; P 96.7 0.26 5.6E-06 52.8 20.5 162 146-319 371-543 (664)
245 COG1484 DnaC DNA replication p 96.7 0.0057 1.2E-07 62.3 8.4 82 168-270 104-185 (254)
246 COG2607 Predicted ATPase (AAA+ 96.7 0.012 2.7E-07 57.1 10.1 117 146-292 60-183 (287)
247 TIGR02974 phageshock_pspF psp 96.7 0.04 8.8E-07 58.6 15.0 45 148-192 1-45 (329)
248 PRK04132 replication factor C 96.7 0.041 9E-07 64.9 16.2 150 177-350 574-728 (846)
249 PF13207 AAA_17: AAA domain; P 96.7 0.0011 2.5E-08 59.3 2.8 21 171-191 1-21 (121)
250 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0057 1.2E-07 62.2 7.9 53 168-222 68-122 (274)
251 cd01120 RecA-like_NTPases RecA 96.7 0.0047 1E-07 58.4 7.1 40 171-212 1-40 (165)
252 TIGR01817 nifA Nif-specific re 96.7 0.039 8.4E-07 63.3 15.7 135 146-292 196-341 (534)
253 PRK08699 DNA polymerase III su 96.6 0.024 5.3E-07 60.0 12.9 69 251-319 112-184 (325)
254 PRK11034 clpA ATP-dependent Cl 96.6 0.0099 2.2E-07 69.8 10.7 119 146-279 458-584 (758)
255 PF10443 RNA12: RNA12 protein; 96.6 0.094 2E-06 56.2 16.9 207 151-371 1-298 (431)
256 KOG0733 Nuclear AAA ATPase (VC 96.6 0.02 4.2E-07 63.0 12.0 93 146-262 190-292 (802)
257 PF00448 SRP54: SRP54-type pro 96.6 0.0047 1E-07 60.3 6.8 90 169-261 1-92 (196)
258 PF13604 AAA_30: AAA domain; P 96.6 0.0096 2.1E-07 58.3 9.0 103 168-289 17-128 (196)
259 cd03238 ABC_UvrA The excision 96.6 0.018 3.8E-07 55.2 10.5 120 168-297 20-154 (176)
260 cd00983 recA RecA is a bacter 96.6 0.0069 1.5E-07 63.4 8.3 87 168-261 54-142 (325)
261 KOG0730 AAA+-type ATPase [Post 96.6 0.018 3.8E-07 64.1 11.6 152 146-321 434-616 (693)
262 PHA00729 NTP-binding motif con 96.6 0.0068 1.5E-07 59.7 7.6 32 158-191 8-39 (226)
263 cd01394 radB RadB. The archaea 96.6 0.009 2E-07 59.8 8.7 43 168-212 18-60 (218)
264 PF07728 AAA_5: AAA domain (dy 96.6 0.0029 6.2E-08 58.3 4.6 89 172-277 2-90 (139)
265 KOG1947 Leucine rich repeat pr 96.5 0.00027 5.8E-09 80.3 -2.9 39 740-778 403-442 (482)
266 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.026 5.5E-07 52.3 10.9 107 168-297 25-132 (144)
267 PRK15429 formate hydrogenlyase 96.5 0.079 1.7E-06 62.8 17.7 135 146-292 376-521 (686)
268 PRK11608 pspF phage shock prot 96.5 0.014 3.1E-07 62.0 10.2 135 146-292 6-151 (326)
269 PRK09354 recA recombinase A; P 96.5 0.0093 2E-07 62.9 8.5 87 168-261 59-147 (349)
270 COG4608 AppF ABC-type oligopep 96.5 0.02 4.3E-07 57.4 10.3 130 168-301 38-179 (268)
271 cd03216 ABC_Carb_Monos_I This 96.5 0.011 2.3E-07 56.2 8.1 119 168-297 25-147 (163)
272 CHL00195 ycf46 Ycf46; Provisio 96.5 0.017 3.7E-07 64.4 10.6 152 146-321 228-406 (489)
273 cd03247 ABCC_cytochrome_bd The 96.5 0.031 6.7E-07 53.9 11.3 124 168-297 27-162 (178)
274 TIGR02012 tigrfam_recA protein 96.4 0.01 2.3E-07 62.0 8.4 87 168-261 54-142 (321)
275 cd03223 ABCD_peroxisomal_ALDP 96.4 0.031 6.7E-07 53.2 11.1 117 168-296 26-152 (166)
276 PF08423 Rad51: Rad51; InterP 96.4 0.0058 1.3E-07 62.5 6.4 57 168-225 37-97 (256)
277 PRK06696 uridine kinase; Valid 96.4 0.0031 6.8E-08 63.3 4.3 41 151-191 3-44 (223)
278 PRK13695 putative NTPase; Prov 96.4 0.0041 8.9E-08 59.8 4.7 22 171-192 2-23 (174)
279 KOG0734 AAA+-type ATPase conta 96.4 0.022 4.7E-07 61.6 10.1 126 146-295 304-452 (752)
280 KOG0735 AAA+-type ATPase [Post 96.3 0.055 1.2E-06 60.6 13.4 93 147-261 409-503 (952)
281 cd01131 PilT Pilus retraction 96.3 0.0077 1.7E-07 59.1 6.4 111 170-295 2-112 (198)
282 PRK15455 PrkA family serine pr 96.3 0.0035 7.7E-08 69.3 4.3 46 146-191 76-125 (644)
283 PRK11889 flhF flagellar biosyn 96.3 0.06 1.3E-06 57.3 13.2 113 168-287 240-357 (436)
284 PRK14974 cell division protein 96.3 0.035 7.7E-07 58.7 11.5 116 168-287 139-259 (336)
285 COG0468 RecA RecA/RadA recombi 96.3 0.023 5.1E-07 58.0 9.8 91 168-261 59-150 (279)
286 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.024 5.3E-07 52.7 9.0 121 170-293 3-139 (159)
287 PRK06067 flagellar accessory p 96.3 0.036 7.7E-07 56.1 11.1 90 168-262 24-130 (234)
288 PF13671 AAA_33: AAA domain; P 96.3 0.01 2.2E-07 54.9 6.5 21 171-191 1-21 (143)
289 cd03115 SRP The signal recogni 96.2 0.036 7.8E-07 53.1 10.3 21 171-191 2-22 (173)
290 cd03228 ABCC_MRP_Like The MRP 96.2 0.03 6.4E-07 53.6 9.5 123 168-297 27-160 (171)
291 KOG0733 Nuclear AAA ATPase (VC 96.2 0.089 1.9E-06 58.1 13.8 175 147-347 512-718 (802)
292 TIGR02858 spore_III_AA stage I 96.2 0.084 1.8E-06 54.2 13.2 132 154-296 97-233 (270)
293 cd03222 ABC_RNaseL_inhibitor T 96.2 0.042 9.1E-07 52.6 10.3 106 168-298 24-138 (177)
294 PRK07667 uridine kinase; Provi 96.2 0.0058 1.3E-07 59.7 4.5 37 155-191 3-39 (193)
295 COG2812 DnaX DNA polymerase II 96.1 0.029 6.4E-07 62.1 10.3 189 146-348 16-215 (515)
296 TIGR03499 FlhF flagellar biosy 96.1 0.02 4.4E-07 59.5 8.6 88 168-261 193-281 (282)
297 PLN03186 DNA repair protein RA 96.1 0.03 6.5E-07 59.5 9.8 65 161-226 115-183 (342)
298 TIGR00064 ftsY signal recognit 96.1 0.036 7.7E-07 57.2 10.1 91 168-261 71-163 (272)
299 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.038 8.1E-07 55.4 9.8 128 168-297 29-204 (254)
300 COG0542 clpA ATP-binding subun 96.1 0.021 4.5E-07 66.0 9.1 151 146-319 170-345 (786)
301 TIGR02239 recomb_RAD51 DNA rep 96.1 0.017 3.7E-07 60.9 7.9 65 161-226 88-156 (316)
302 KOG2228 Origin recognition com 96.1 0.079 1.7E-06 54.3 11.9 172 146-320 24-219 (408)
303 PRK00771 signal recognition pa 96.1 0.074 1.6E-06 58.4 12.9 58 168-227 94-152 (437)
304 cd00544 CobU Adenosylcobinamid 96.1 0.048 1E-06 51.8 10.0 152 171-348 1-167 (169)
305 PF07693 KAP_NTPase: KAP famil 96.1 0.054 1.2E-06 57.9 11.8 42 152-193 2-44 (325)
306 KOG1969 DNA replication checkp 96.1 0.018 3.8E-07 64.7 7.9 85 168-276 325-411 (877)
307 cd03229 ABC_Class3 This class 96.0 0.031 6.8E-07 53.8 9.0 127 168-297 25-166 (178)
308 KOG2739 Leucine-rich acidic nu 96.0 0.0018 3.9E-08 63.8 0.2 37 678-714 89-127 (260)
309 PRK00625 shikimate kinase; Pro 96.0 0.046 9.9E-07 52.2 9.7 21 171-191 2-22 (173)
310 PRK05800 cobU adenosylcobinami 96.0 0.038 8.2E-07 52.6 9.1 156 170-350 2-169 (170)
311 cd03230 ABC_DR_subfamily_A Thi 96.0 0.06 1.3E-06 51.6 10.6 125 168-298 25-161 (173)
312 PF00485 PRK: Phosphoribulokin 96.0 0.029 6.3E-07 54.9 8.5 83 171-256 1-87 (194)
313 KOG1051 Chaperone HSP104 and r 95.9 0.037 8.1E-07 64.9 10.4 119 146-279 562-687 (898)
314 PRK12724 flagellar biosynthesi 95.9 0.036 7.9E-07 59.7 9.5 23 169-191 223-245 (432)
315 COG0464 SpoVK ATPases of the A 95.9 0.066 1.4E-06 60.9 12.4 152 146-321 242-424 (494)
316 COG1618 Predicted nucleotide k 95.9 0.0072 1.6E-07 55.0 3.5 23 170-192 6-28 (179)
317 COG1875 NYN ribonuclease and A 95.9 0.041 8.9E-07 57.0 9.3 41 148-190 226-266 (436)
318 TIGR02238 recomb_DMC1 meiotic 95.9 0.044 9.6E-07 57.6 10.0 65 161-226 88-156 (313)
319 PLN00020 ribulose bisphosphate 95.9 0.012 2.5E-07 61.8 5.4 25 168-192 147-171 (413)
320 PRK07132 DNA polymerase III su 95.9 0.41 9E-06 49.9 16.9 167 155-352 5-184 (299)
321 TIGR02329 propionate_PrpR prop 95.9 0.13 2.8E-06 58.2 14.2 47 146-192 212-258 (526)
322 PRK04301 radA DNA repair and r 95.9 0.027 5.8E-07 59.9 8.4 57 168-225 101-161 (317)
323 PRK05703 flhF flagellar biosyn 95.9 0.084 1.8E-06 58.1 12.4 102 169-277 221-326 (424)
324 PF07724 AAA_2: AAA domain (Cd 95.9 0.015 3.3E-07 55.3 5.8 91 169-278 3-105 (171)
325 COG2842 Uncharacterized ATPase 95.9 0.32 7E-06 49.4 15.2 124 146-282 72-195 (297)
326 TIGR02236 recomb_radA DNA repa 95.9 0.03 6.4E-07 59.4 8.6 57 168-225 94-154 (310)
327 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.12 2.5E-06 52.2 12.6 118 168-290 19-164 (229)
328 PLN03187 meiotic recombination 95.8 0.052 1.1E-06 57.6 10.2 59 168-227 125-187 (344)
329 COG0572 Udk Uridine kinase [Nu 95.8 0.011 2.4E-07 57.5 4.7 24 168-191 7-30 (218)
330 KOG0744 AAA+-type ATPase [Post 95.8 0.03 6.5E-07 56.9 7.7 80 168-261 176-259 (423)
331 cd02025 PanK Pantothenate kina 95.8 0.029 6.2E-07 56.0 7.8 21 171-191 1-21 (220)
332 PF00154 RecA: recA bacterial 95.8 0.021 4.5E-07 59.6 6.9 87 168-261 52-140 (322)
333 PRK13540 cytochrome c biogenes 95.8 0.082 1.8E-06 52.0 11.0 25 168-192 26-50 (200)
334 cd01122 GP4d_helicase GP4d_hel 95.8 0.13 2.8E-06 53.4 12.9 55 168-225 29-83 (271)
335 PRK05022 anaerobic nitric oxid 95.8 0.041 8.8E-07 62.6 9.7 135 146-292 187-332 (509)
336 PTZ00301 uridine kinase; Provi 95.8 0.011 2.4E-07 58.3 4.4 23 169-191 3-25 (210)
337 COG1126 GlnQ ABC-type polar am 95.8 0.097 2.1E-06 50.5 10.5 131 168-301 27-205 (240)
338 PRK12723 flagellar biosynthesi 95.7 0.13 2.9E-06 55.6 12.9 104 168-278 173-282 (388)
339 PRK10820 DNA-binding transcrip 95.7 0.048 1E-06 62.1 10.1 134 146-292 204-349 (520)
340 PRK09270 nucleoside triphospha 95.7 0.041 8.9E-07 55.4 8.6 24 168-191 32-55 (229)
341 COG1120 FepC ABC-type cobalami 95.7 0.076 1.6E-06 53.5 10.2 133 168-301 27-208 (258)
342 cd03235 ABC_Metallic_Cations A 95.7 0.13 2.9E-06 51.1 12.1 25 168-192 24-48 (213)
343 cd03246 ABCC_Protease_Secretio 95.7 0.057 1.2E-06 51.7 9.1 122 168-296 27-160 (173)
344 PRK12726 flagellar biosynthesi 95.7 0.13 2.8E-06 54.8 12.0 103 168-276 205-311 (407)
345 COG0714 MoxR-like ATPases [Gen 95.7 0.044 9.6E-07 58.6 9.0 112 146-278 24-138 (329)
346 PF00560 LRR_1: Leucine Rich R 95.7 0.0051 1.1E-07 36.3 1.0 19 581-599 2-20 (22)
347 PRK15424 propionate catabolism 95.7 0.2 4.3E-06 56.7 14.4 47 146-192 219-265 (538)
348 PRK06547 hypothetical protein; 95.6 0.014 2.9E-07 55.7 4.4 33 158-192 6-38 (172)
349 PRK08533 flagellar accessory p 95.6 0.081 1.8E-06 53.2 10.2 49 168-220 23-71 (230)
350 cd03263 ABC_subfamily_A The AB 95.6 0.1 2.3E-06 52.1 11.1 25 168-192 27-51 (220)
351 cd03265 ABC_DrrA DrrA is the A 95.6 0.098 2.1E-06 52.3 10.8 25 168-192 25-49 (220)
352 cd03264 ABC_drug_resistance_li 95.6 0.11 2.4E-06 51.6 11.1 21 171-191 27-47 (211)
353 TIGR02324 CP_lyasePhnL phospho 95.6 0.2 4.3E-06 50.3 13.0 25 168-192 33-57 (224)
354 PRK14722 flhF flagellar biosyn 95.6 0.12 2.6E-06 55.4 11.7 88 168-263 136-226 (374)
355 TIGR03522 GldA_ABC_ATP gliding 95.6 0.13 2.8E-06 54.2 12.1 25 168-192 27-51 (301)
356 cd03226 ABC_cobalt_CbiO_domain 95.6 0.15 3.3E-06 50.4 11.9 25 168-192 25-49 (205)
357 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.08 1.7E-06 53.6 10.1 56 161-220 13-68 (237)
358 TIGR01650 PD_CobS cobaltochela 95.6 0.21 4.5E-06 52.3 13.1 61 147-216 46-106 (327)
359 TIGR00554 panK_bact pantothena 95.6 0.048 1E-06 56.5 8.4 79 168-252 61-141 (290)
360 TIGR00960 3a0501s02 Type II (G 95.6 0.12 2.6E-06 51.5 11.3 25 168-192 28-52 (216)
361 KOG1947 Leucine rich repeat pr 95.6 0.0025 5.5E-08 72.3 -1.1 43 705-756 403-445 (482)
362 TIGR01425 SRP54_euk signal rec 95.5 0.16 3.5E-06 55.3 12.7 24 168-191 99-122 (429)
363 PRK10733 hflB ATP-dependent me 95.5 0.068 1.5E-06 62.4 10.6 151 146-320 152-335 (644)
364 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.077 1.7E-06 51.3 9.5 21 171-191 1-21 (183)
365 PRK13543 cytochrome c biogenes 95.5 0.16 3.5E-06 50.5 12.0 25 168-192 36-60 (214)
366 PRK12727 flagellar biosynthesi 95.5 0.051 1.1E-06 60.2 8.8 89 168-262 349-438 (559)
367 TIGR00390 hslU ATP-dependent p 95.5 0.032 7E-07 59.9 7.1 77 146-224 12-104 (441)
368 PRK08233 hypothetical protein; 95.5 0.01 2.2E-07 57.5 3.1 24 169-192 3-26 (182)
369 PRK09544 znuC high-affinity zi 95.5 0.12 2.6E-06 52.8 11.2 25 168-192 29-53 (251)
370 PF13238 AAA_18: AAA domain; P 95.5 0.0088 1.9E-07 54.0 2.5 21 172-192 1-21 (129)
371 PRK10867 signal recognition pa 95.5 0.084 1.8E-06 57.9 10.4 24 168-191 99-122 (433)
372 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.14 2.9E-06 51.5 11.3 25 168-192 47-71 (224)
373 PRK13539 cytochrome c biogenes 95.5 0.11 2.4E-06 51.5 10.4 25 168-192 27-51 (207)
374 TIGR03740 galliderm_ABC gallid 95.5 0.14 3E-06 51.4 11.3 25 168-192 25-49 (223)
375 cd03259 ABC_Carb_Solutes_like 95.5 0.091 2E-06 52.3 9.9 25 168-192 25-49 (213)
376 cd03215 ABC_Carb_Monos_II This 95.5 0.068 1.5E-06 51.7 8.8 25 168-192 25-49 (182)
377 PTZ00035 Rad51 protein; Provis 95.5 0.094 2E-06 55.9 10.5 65 161-226 110-178 (337)
378 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.14 3E-06 52.1 11.3 132 168-299 24-183 (246)
379 TIGR03864 PQQ_ABC_ATP ABC tran 95.4 0.11 2.4E-06 52.6 10.6 25 168-192 26-50 (236)
380 TIGR00150 HI0065_YjeE ATPase, 95.4 0.02 4.4E-07 51.5 4.4 41 153-193 6-46 (133)
381 cd02019 NK Nucleoside/nucleoti 95.4 0.01 2.2E-07 47.0 2.2 22 171-192 1-22 (69)
382 PRK11248 tauB taurine transpor 95.4 0.18 4E-06 51.6 12.1 25 168-192 26-50 (255)
383 cd03266 ABC_NatA_sodium_export 95.4 0.098 2.1E-06 52.3 9.9 25 168-192 30-54 (218)
384 cd01121 Sms Sms (bacterial rad 95.4 0.06 1.3E-06 58.0 8.8 86 168-261 81-167 (372)
385 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.23 5E-06 49.1 12.4 24 168-191 33-56 (207)
386 PRK11388 DNA-binding transcrip 95.4 0.19 4.1E-06 59.1 13.6 131 146-291 325-466 (638)
387 PRK10247 putative ABC transpor 95.3 0.14 3.1E-06 51.4 11.0 25 168-192 32-56 (225)
388 cd03233 ABC_PDR_domain1 The pl 95.3 0.14 3E-06 50.5 10.6 25 168-192 32-56 (202)
389 PRK05480 uridine/cytidine kina 95.3 0.012 2.5E-07 58.5 2.9 25 168-192 5-29 (209)
390 PF03215 Rad17: Rad17 cell cyc 95.3 0.12 2.7E-06 58.1 11.2 56 147-206 20-78 (519)
391 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.065 1.4E-06 50.4 7.9 119 168-298 24-146 (157)
392 TIGR00959 ffh signal recogniti 95.3 0.2 4.4E-06 54.9 12.6 24 168-191 98-121 (428)
393 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.031 6.7E-07 55.5 5.9 124 169-298 29-160 (213)
394 PRK05439 pantothenate kinase; 95.3 0.063 1.4E-06 56.0 8.3 79 168-253 85-166 (311)
395 KOG1532 GTPase XAB1, interacts 95.3 0.07 1.5E-06 52.9 7.9 90 168-260 18-123 (366)
396 TIGR03771 anch_rpt_ABC anchore 95.3 0.22 4.7E-06 49.9 12.0 25 168-192 5-29 (223)
397 PRK14247 phosphate ABC transpo 95.3 0.17 3.6E-06 51.8 11.4 25 168-192 28-52 (250)
398 PF07726 AAA_3: ATPase family 95.2 0.016 3.6E-07 51.2 3.2 27 172-200 2-28 (131)
399 cd03218 ABC_YhbG The ABC trans 95.2 0.14 3.1E-06 51.7 10.6 25 168-192 25-49 (232)
400 PF03308 ArgK: ArgK protein; 95.2 0.025 5.3E-07 56.4 4.7 59 154-212 14-72 (266)
401 TIGR00235 udk uridine kinase. 95.2 0.012 2.7E-07 58.2 2.8 25 168-192 5-29 (207)
402 cd03231 ABC_CcmA_heme_exporter 95.2 0.17 3.8E-06 49.7 10.8 25 168-192 25-49 (201)
403 TIGR01277 thiQ thiamine ABC tr 95.2 0.18 3.9E-06 50.1 11.1 25 168-192 23-47 (213)
404 COG1102 Cmk Cytidylate kinase 95.2 0.02 4.3E-07 52.3 3.6 45 171-228 2-46 (179)
405 KOG4252 GTP-binding protein [S 95.2 0.076 1.6E-06 48.9 7.3 109 170-350 21-129 (246)
406 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.11 2.3E-06 51.2 9.3 25 168-192 25-49 (200)
407 cd03244 ABCC_MRP_domain2 Domai 95.2 0.15 3.2E-06 51.1 10.4 25 168-192 29-53 (221)
408 PRK10923 glnG nitrogen regulat 95.2 0.12 2.5E-06 58.5 10.8 47 146-192 138-184 (469)
409 cd03245 ABCC_bacteriocin_expor 95.1 0.22 4.8E-06 49.8 11.5 25 168-192 29-53 (220)
410 TIGR03411 urea_trans_UrtD urea 95.1 0.25 5.5E-06 50.2 12.2 25 168-192 27-51 (242)
411 cd03300 ABC_PotA_N PotA is an 95.1 0.15 3.3E-06 51.5 10.4 25 168-192 25-49 (232)
412 KOG2123 Uncharacterized conser 95.1 0.0021 4.6E-08 63.4 -2.9 99 520-632 18-123 (388)
413 PRK09519 recA DNA recombinatio 95.1 0.069 1.5E-06 62.3 8.7 88 168-262 59-148 (790)
414 cd03267 ABC_NatA_like Similar 95.1 0.15 3.2E-06 51.6 10.4 25 168-192 46-70 (236)
415 COG0563 Adk Adenylate kinase a 95.1 0.025 5.5E-07 54.1 4.4 22 171-192 2-23 (178)
416 TIGR00382 clpX endopeptidase C 95.1 0.14 3.1E-06 55.6 10.6 46 146-191 77-138 (413)
417 PRK10463 hydrogenase nickel in 95.1 0.17 3.8E-06 52.0 10.6 25 168-192 103-127 (290)
418 PF01583 APS_kinase: Adenylyls 95.1 0.026 5.6E-07 52.3 4.2 36 169-206 2-37 (156)
419 PRK11247 ssuB aliphatic sulfon 95.1 0.26 5.7E-06 50.5 12.1 25 168-192 37-61 (257)
420 PRK10416 signal recognition pa 95.1 0.15 3.2E-06 53.9 10.3 25 168-192 113-137 (318)
421 PRK05342 clpX ATP-dependent pr 95.1 0.057 1.2E-06 59.0 7.4 46 146-191 71-130 (412)
422 cd03295 ABC_OpuCA_Osmoprotecti 95.0 0.16 3.5E-06 51.7 10.4 25 168-192 26-50 (242)
423 PRK05201 hslU ATP-dependent pr 95.0 0.043 9.4E-07 59.0 6.2 77 146-224 15-107 (443)
424 PRK00409 recombination and DNA 95.0 0.08 1.7E-06 63.0 9.1 187 168-371 326-524 (782)
425 COG1703 ArgK Putative periplas 95.0 0.032 6.9E-07 56.4 4.8 59 155-213 37-95 (323)
426 PRK13409 putative ATPase RIL; 95.0 0.18 3.9E-06 58.3 11.7 131 168-301 364-523 (590)
427 TIGR01188 drrA daunorubicin re 95.0 0.23 5.1E-06 52.3 11.8 25 168-192 18-42 (302)
428 PRK06762 hypothetical protein; 95.0 0.017 3.6E-07 55.0 2.8 23 169-191 2-24 (166)
429 COG1131 CcmA ABC-type multidru 95.0 0.25 5.5E-06 51.6 11.8 25 168-192 30-54 (293)
430 cd03232 ABC_PDR_domain2 The pl 95.0 0.16 3.6E-06 49.5 9.8 24 168-191 32-55 (192)
431 cd03283 ABC_MutS-like MutS-lik 94.9 0.16 3.5E-06 49.8 9.6 22 170-191 26-47 (199)
432 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.095 2.1E-06 53.8 8.4 40 168-209 35-74 (259)
433 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.064 1.4E-06 52.8 6.8 124 168-299 28-158 (204)
434 PRK03839 putative kinase; Prov 94.9 0.017 3.6E-07 55.9 2.6 22 171-192 2-23 (180)
435 KOG0728 26S proteasome regulat 94.9 0.59 1.3E-05 45.8 12.9 150 147-320 147-331 (404)
436 PF12775 AAA_7: P-loop contain 94.9 0.028 6.1E-07 57.9 4.4 91 155-264 22-112 (272)
437 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.2 4.4E-06 50.8 10.6 25 168-192 28-52 (238)
438 TIGR00968 3a0106s01 sulfate AB 94.9 0.18 3.9E-06 51.1 10.2 25 168-192 25-49 (237)
439 cd01135 V_A-ATPase_B V/A-type 94.9 0.086 1.9E-06 53.6 7.6 55 168-222 68-125 (276)
440 PRK06002 fliI flagellum-specif 94.9 0.1 2.2E-06 57.0 8.7 89 168-261 164-263 (450)
441 PRK14269 phosphate ABC transpo 94.9 0.32 7E-06 49.6 12.1 25 168-192 27-51 (246)
442 KOG2123 Uncharacterized conser 94.9 0.0017 3.7E-08 64.1 -4.3 61 578-641 18-78 (388)
443 cd03236 ABC_RNaseL_inhibitor_d 94.8 0.32 7E-06 49.8 11.8 25 168-192 25-49 (255)
444 KOG0736 Peroxisome assembly fa 94.8 0.15 3.2E-06 57.9 9.8 93 146-262 672-774 (953)
445 cd03254 ABCC_Glucan_exporter_l 94.8 0.43 9.3E-06 48.0 12.7 25 168-192 28-52 (229)
446 PRK12597 F0F1 ATP synthase sub 94.8 0.075 1.6E-06 58.5 7.5 54 168-222 142-196 (461)
447 TIGR01360 aden_kin_iso1 adenyl 94.8 0.023 4.9E-07 55.3 3.2 24 168-191 2-25 (188)
448 cd03298 ABC_ThiQ_thiamine_tran 94.8 0.17 3.7E-06 50.3 9.5 25 168-192 23-47 (211)
449 cd03213 ABCG_EPDR ABCG transpo 94.8 0.3 6.4E-06 47.8 11.0 25 168-192 34-58 (194)
450 PRK10419 nikE nickel transport 94.7 0.38 8.2E-06 49.8 12.4 25 168-192 37-61 (268)
451 PRK13537 nodulation ABC transp 94.7 0.27 5.8E-06 51.9 11.4 25 168-192 32-56 (306)
452 COG1419 FlhF Flagellar GTP-bin 94.7 0.16 3.4E-06 54.2 9.4 104 168-278 202-309 (407)
453 PRK13650 cbiO cobalt transport 94.7 0.21 4.6E-06 52.0 10.4 25 168-192 32-56 (279)
454 TIGR01818 ntrC nitrogen regula 94.7 0.3 6.4E-06 55.2 12.4 135 146-292 134-279 (463)
455 cd02027 APSK Adenosine 5'-phos 94.7 0.23 4.9E-06 46.2 9.4 21 171-191 1-21 (149)
456 KOG3864 Uncharacterized conser 94.7 0.0021 4.6E-08 60.7 -4.1 86 682-776 103-189 (221)
457 PRK00279 adk adenylate kinase; 94.6 0.13 2.8E-06 51.3 8.3 21 171-191 2-22 (215)
458 PRK04328 hypothetical protein; 94.6 0.12 2.7E-06 52.6 8.3 41 168-210 22-62 (249)
459 PRK05917 DNA polymerase III su 94.6 0.57 1.2E-05 48.3 13.0 134 154-307 5-154 (290)
460 cd03278 ABC_SMC_barmotin Barmo 94.6 0.35 7.6E-06 47.4 11.1 21 170-190 23-43 (197)
461 COG1428 Deoxynucleoside kinase 94.6 0.021 4.5E-07 54.9 2.4 25 169-193 4-28 (216)
462 cd02023 UMPK Uridine monophosp 94.6 0.019 4.2E-07 56.4 2.2 21 171-191 1-21 (198)
463 PRK14259 phosphate ABC transpo 94.6 0.41 8.9E-06 49.5 12.2 25 168-192 38-62 (269)
464 cd02024 NRK1 Nicotinamide ribo 94.6 0.02 4.3E-07 55.2 2.2 22 171-192 1-22 (187)
465 PRK04040 adenylate kinase; Pro 94.6 0.024 5.2E-07 55.0 2.8 23 169-191 2-24 (188)
466 PF00006 ATP-synt_ab: ATP synt 94.6 0.089 1.9E-06 52.0 6.7 88 168-261 14-114 (215)
467 cd03240 ABC_Rad50 The catalyti 94.6 0.17 3.6E-06 49.9 8.8 54 245-298 132-189 (204)
468 PRK13545 tagH teichoic acids e 94.6 0.47 1E-05 53.1 12.9 25 168-192 49-73 (549)
469 PRK13643 cbiO cobalt transport 94.5 0.44 9.6E-06 49.8 12.4 25 168-192 31-55 (288)
470 COG1066 Sms Predicted ATP-depe 94.5 0.13 2.9E-06 54.3 8.1 97 157-262 81-178 (456)
471 PRK06217 hypothetical protein; 94.5 0.052 1.1E-06 52.6 5.0 23 171-193 3-25 (183)
472 TIGR03574 selen_PSTK L-seryl-t 94.5 0.13 2.8E-06 52.6 8.2 22 171-192 1-22 (249)
473 PRK14723 flhF flagellar biosyn 94.5 0.23 5E-06 57.9 10.9 87 169-262 185-273 (767)
474 cd03251 ABCC_MsbA MsbA is an e 94.5 0.59 1.3E-05 47.2 13.0 25 168-192 27-51 (234)
475 PRK08972 fliI flagellum-specif 94.5 0.12 2.7E-06 56.1 8.2 88 168-261 161-261 (444)
476 smart00534 MUTSac ATPase domai 94.5 0.035 7.6E-07 53.8 3.8 122 171-299 1-129 (185)
477 cd02028 UMPK_like Uridine mono 94.5 0.034 7.5E-07 53.5 3.6 22 171-192 1-22 (179)
478 PTZ00088 adenylate kinase 1; P 94.5 0.032 6.9E-07 55.9 3.4 21 171-191 8-28 (229)
479 PF03205 MobB: Molybdopterin g 94.4 0.059 1.3E-06 49.4 4.8 39 170-209 1-39 (140)
480 PRK10418 nikD nickel transport 94.4 0.55 1.2E-05 48.1 12.6 25 168-192 28-52 (254)
481 PF00560 LRR_1: Leucine Rich R 94.4 0.018 3.9E-07 33.9 0.9 18 604-622 2-19 (22)
482 PRK11147 ABC transporter ATPas 94.4 0.43 9.3E-06 56.0 13.2 25 168-192 28-52 (635)
483 TIGR02322 phosphon_PhnN phosph 94.4 0.028 6.1E-07 54.2 2.9 23 170-192 2-24 (179)
484 TIGR01288 nodI ATP-binding ABC 94.4 0.35 7.6E-06 51.0 11.3 25 168-192 29-53 (303)
485 cd03253 ABCC_ATM1_transporter 94.4 0.31 6.8E-06 49.3 10.6 55 243-297 146-201 (236)
486 TIGR03600 phage_DnaB phage rep 94.4 2.2 4.9E-05 47.3 18.2 56 168-226 193-248 (421)
487 cd01129 PulE-GspE PulE/GspE Th 94.3 0.086 1.9E-06 54.2 6.4 100 149-264 62-161 (264)
488 COG4618 ArpD ABC-type protease 94.3 0.25 5.5E-06 53.7 9.9 24 168-191 361-384 (580)
489 TIGR01069 mutS2 MutS2 family p 94.3 0.029 6.2E-07 66.4 3.2 188 168-371 321-519 (771)
490 PRK13634 cbiO cobalt transport 94.3 0.43 9.4E-06 49.9 11.8 25 168-192 32-56 (290)
491 PRK10751 molybdopterin-guanine 94.3 0.036 7.9E-07 52.5 3.3 25 168-192 5-29 (173)
492 TIGR00708 cobA cob(I)alamin ad 94.3 0.35 7.5E-06 45.7 9.7 120 169-292 5-140 (173)
493 COG1124 DppF ABC-type dipeptid 94.3 0.048 1E-06 53.6 4.1 24 168-191 32-55 (252)
494 PRK15064 ABC transporter ATP-b 94.3 0.54 1.2E-05 54.0 13.5 25 168-192 26-50 (530)
495 cd01125 repA Hexameric Replica 94.3 0.21 4.5E-06 50.7 9.0 21 171-191 3-23 (239)
496 PRK08927 fliI flagellum-specif 94.3 0.15 3.3E-06 55.6 8.3 88 168-261 157-257 (442)
497 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.1 2.2E-06 56.0 6.9 103 168-293 61-168 (362)
498 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.041 8.8E-07 57.5 3.7 46 146-191 61-110 (358)
499 TIGR03263 guanyl_kin guanylate 94.2 0.035 7.6E-07 53.6 3.1 22 170-191 2-23 (180)
500 TIGR02655 circ_KaiC circadian 94.2 0.21 4.6E-06 56.3 9.8 65 156-225 250-314 (484)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-86 Score=764.34 Aligned_cols=744 Identities=25% Similarity=0.342 Sum_probs=558.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhccccCCccchhcccchHHHHHHHHHHHHhhchhhHHHhHhhhHhhhhcCCCCC-
Q 044700 5 ELIRSVQVFLLRLGIIEEMVEDGEESRLNKTDSRTVIRGVMTSVKDWLDLVKVVATKSEDLVDELSTEFLRWKQHPDQS- 83 (795)
Q Consensus 5 ~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~y~~ed~ld~~~~~~~~~~~~~~~~- 83 (795)
++...+..|+..|..+|.+++||+.++... ..+..|.+.+++++|++||+++.|..+....+..+...
T Consensus 25 ~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-----------~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~ 93 (889)
T KOG4658|consen 25 GKDNYILELKENLKALQSALEDLDAKRDDL-----------ERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST 93 (889)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 456689999999999999999999998776 89999999999999999999999998876543322111
Q ss_pred C------C-C-C-ChhhHHHHHHHHHHHHHHhcCCC-CCcccccCCccccccccCCCCCCcccccccccCCCCceeecch
Q 044700 84 D------E-P-P-WPDFTNKIQDLNDVLRPILRLPK-QWFQLDRRSQDDFQNRYEGGPSGFVSTSFLQTCSRSETCGVDE 153 (795)
Q Consensus 84 ~------~-~-~-~~~~~~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~ 153 (795)
+ . + . ++.....+..+.+++..+.+.+. ++.......... ........++.+...+ .+ ||.+.
T Consensus 94 ~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~----~~~~~~~~e~~~~~~~---~~-VG~e~ 165 (889)
T KOG4658|consen 94 RSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGE----SLDPREKVETRPIQSE---SD-VGLET 165 (889)
T ss_pred hHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccc----cccchhhcccCCCCcc---cc-ccHHH
Confidence 0 0 0 0 12333444444444444444444 332221110000 0001112334444444 45 99999
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcc-hhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYK-VMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS 232 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 232 (795)
.++++.+.|..++ ..+|+|+||||+||||||+.++|+.. ++.+||.++||.||+.++..+++++|++.++.....+
T Consensus 166 ~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~- 242 (889)
T KOG4658|consen 166 MLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEW- 242 (889)
T ss_pred HHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCccc-
Confidence 9999999999984 49999999999999999999999987 9999999999999999999999999999999865532
Q ss_pred CCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh-hCCc--ccCCCCCh
Q 044700 233 SQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK-IGST--ENIRRASD 309 (795)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~-~~~~--~~l~~L~~ 309 (795)
.....++.+..+.+.|+++||+|||||||+.. +|+.+..++|...+||+|++|||++.|+.. +++. ++++.|+.
T Consensus 243 -~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 243 -EDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred -chhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 22334789999999999999999999999874 799999999999999999999999999998 6654 99999999
Q ss_pred HhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-CHHHHHHHHhhhcccc----cccccccc
Q 044700 310 EASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK-TEKEWQSILDSKMWQV----QYIERHHF 384 (795)
Q Consensus 310 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~-~~~~w~~~l~~~~~~~----~~~~~~~~ 384 (795)
+|||+||++.||.... ...+.++++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+...+.. .+..+.++
T Consensus 320 ~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred cccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999986533 2234489999999999999999999999999999 8999999999776552 23357899
Q ss_pred ceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCCh-------hhhhhHHHHHHHHcccccccccccCC
Q 044700 385 VPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHK-------EAVGQMCFDQMVARSWFQKFEFEEDD 457 (795)
Q Consensus 385 ~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~-------~~~~~~~~~~L~~~sll~~~~~~~~~ 457 (795)
++|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+ +++|..|+++|++++|++....
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~---- 474 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD---- 474 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc----
Confidence 99999999999999999999999999999999999999999999973 7999999999999999998721
Q ss_pred CCCcEEeeccCHHHHHHHHHHhh-----cccceeecc-CCcc---cCcccceeEEEEEeeCCCCCCccccccCcceEEee
Q 044700 458 DDGRILRCKMPVQVHKFVRFLAQ-----NYCASIEVD-GNFE---KPRRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRI 528 (795)
Q Consensus 458 ~~~~~~~c~mHdlv~d~~~~~~~-----~~~~~~~~~-~~~~---~~~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l 528 (795)
.++..+|+|||+||++|.++|+ .+++.+..+ +.+. ...+..+|++++.++.+..++... .+++|++|.+
T Consensus 475 -~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll 552 (889)
T KOG4658|consen 475 -EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLL 552 (889)
T ss_pred -ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEE
Confidence 2677889999999999999999 565444432 1111 114568899999998887765543 5568999999
Q ss_pred ccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEe
Q 044700 529 QYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLE 608 (795)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 608 (795)
..|.. .+......+|.. ++.|++|||++|... .++|..|++|.+||||+|+++.++.+|..+++|..|++||
T Consensus 553 ~~n~~---~l~~is~~ff~~-m~~LrVLDLs~~~~l----~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 553 QRNSD---WLLEISGEFFRS-LPLLRVLDLSGNSSL----SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred eecch---hhhhcCHHHHhh-CcceEEEECCCCCcc----CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 98841 134445556777 999999999999877 8999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccchhhccCcccceeecCCccccc---CcccccccccCC---Cc-----------CCCC----cceEEEecc
Q 044700 609 LNWCTNLETLPQGMGKLINLEHLLNVGTSLAS---MPKEIERLTRLS---AQ-----------PPEY----LMRLEIRDY 667 (795)
Q Consensus 609 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---lp~~i~~L~~L~---l~-----------~~~~----L~~L~l~~~ 667 (795)
+..+.....+|..+..|++||+|.+....... .-..+.+|++|. .. .... .+.+.+.++
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 99987777777777789999999987654211 111222222220 00 0000 011111112
Q ss_pred CCCCCCchhhhhcCccEEEEeCCCCC------------------------------CCCCCCCCCCccCeeecccccCce
Q 044700 668 RGSTFPSWIDLLSRLTILSLKDWTNC------------------------------EQLAPLGNLPSLESLSLFSMGSVR 717 (795)
Q Consensus 668 ~~~~lp~~i~~l~~L~~L~L~~~~~~------------------------------~~l~~l~~l~~L~~L~L~~~~~l~ 717 (795)
.....+..+..+.+|+.|.+.+|... ..+...-..|+|+.|.+..|+.++
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 22223334445566666666665553 222222346788888888888776
Q ss_pred eeCccccCCCCCCCccCCCCCCccee-eecCCcccccccccccccccccceeeecCCCCCcCCCCCCCcceeccC
Q 044700 718 KVGNEFLGIKSGIASSVTYFPRLKSL-KFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGIFLSQVIKPV 791 (795)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~L~~L~i~~~ 791 (795)
.+-+....... .......|.++..+ .+.+.+.+..+-..... +|+|+.+.+..||+++.+|. +..+.+.+|
T Consensus 785 ~~i~~~k~~~~-l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~-~~~l~~~~ve~~p~l~~~P~-~~~~~i~~~ 856 (889)
T KOG4658|consen 785 DIIPKLKALLE-LKELILPFNKLEGLRMLCSLGGLPQLYWLPLS-FLKLEELIVEECPKLGKLPL-LSTLTIVGC 856 (889)
T ss_pred cCCCHHHHhhh-cccEEecccccccceeeecCCCCceeEecccC-ccchhheehhcCcccccCcc-ccccceecc
Confidence 65443222111 11123456777777 46666666665444444 77899999999999999985 666666665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-63 Score=610.77 Aligned_cols=643 Identities=20% Similarity=0.252 Sum_probs=412.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCccccccccCCCCCCcccccccccCCCCceeecchhHHHHHHHHhCCCCCCcE
Q 044700 92 TNKIQDLNDVLRPILRLPKQWFQLDRRSQDDFQNRYEGGPSGFVSTSFLQTCSRSETCGVDEEKEDLVSKLLSSSTEIPI 171 (795)
Q Consensus 92 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~v 171 (795)
..++++|++++.++++..++.+.........+++++..+......++..+. .++|||+.+++++..+|..+.+.+++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~---~~~vG~~~~l~~l~~lL~l~~~~~~v 209 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDF---EDFVGIEDHIAKMSSLLHLESEEVRM 209 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCccc---ccccchHHHHHHHHHHHccccCceEE
Confidence 457999999999999998855544333344455555545544444444444 68999999999999999766668999
Q ss_pred EEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe---CCC-----------CC-HHHHHHHHHHHhcCCcccCCCCCC
Q 044700 172 ISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA---SAD-----------SD-VLSVASSIAEALGASASAFSSQGQ 236 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~ 236 (795)
|+||||||+||||||+++|+ ++..+|++.+|+.. +.. ++ ...++++++.++...... ...
T Consensus 210 vgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~---~~~ 284 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI---KIY 284 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc---ccC
Confidence 99999999999999999999 77889998888752 111 11 123455555555433211 111
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCCc--ccCCCCChHhHHH
Q 044700 237 ELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGST--ENIRRASDEASWS 314 (795)
Q Consensus 237 ~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~--~~l~~L~~~~~~~ 314 (795)
. ...+++.++++|+||||||||+. .+|+.+.....+.+.||+||||||++.++..++.. |+++.|+.++||+
T Consensus 285 ~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 285 H----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred C----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHH
Confidence 1 24577888999999999999764 58999988878888999999999999999876543 9999999999999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhccccccccccccceeeeccCCC
Q 044700 315 LFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDM 394 (795)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L 394 (795)
||+++||+... ++.++.+++++|+++|+|+|||++++|+.|++++..+|+.++++.... .+..+..+|++||++|
T Consensus 359 LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 359 MFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC---ccHHHHHHHHHhhhcc
Confidence 99999997643 345688999999999999999999999999999999999999876543 2457999999999999
Q ss_pred hH-HHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHHcccccccccccCCCCCcEEeeccCHHHHH
Q 044700 395 PF-AVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVARSWFQKFEFEEDDDDGRILRCKMPVQVHK 473 (795)
Q Consensus 395 ~~-~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d 473 (795)
++ ..|.||+++|+||.+..++ .+..|++.+... ++..++.|+++||++.. . ..+ .|||++|+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----~~~~l~~L~~ksLi~~~-------~-~~~--~MHdLl~~ 496 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----VNIGLKNLVDKSLIHVR-------E-DIV--EMHSLLQE 496 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----chhChHHHHhcCCEEEc-------C-CeE--EhhhHHHH
Confidence 86 5999999999999987554 477788876554 23348999999999875 2 235 99999999
Q ss_pred HHHHHhhccc-------ceeec---------c-CCcc--------------------cCcccceeEEEEEeeCCC-----
Q 044700 474 FVRFLAQNYC-------ASIEV---------D-GNFE--------------------KPRRVKLSHLFLRVSEGI----- 511 (795)
Q Consensus 474 ~~~~~~~~~~-------~~~~~---------~-~~~~--------------------~~~~~~l~~l~l~~~~~~----- 511 (795)
+++.+++.+. +.... . +... .....+++.|.+..+...
T Consensus 497 ~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~ 576 (1153)
T PLN03210 497 MGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV 576 (1153)
T ss_pred HHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccc
Confidence 9999986542 11000 0 0000 000112222222111000
Q ss_pred --CCCcccccc-CcceEEeeccCCCccc-----------------chhhhhhhHHhhhCCeeeEEecCCCCccccccccc
Q 044700 512 --SFPVSVSEV-QNLRSLRIQYGSKTCS-----------------LISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKI 571 (795)
Q Consensus 512 --~~~~~~~~~-~~Lr~L~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 571 (795)
.+|..+..+ .+||.|.+.++...+- .+. .++..+.. +++|+.|+|+++..+ ..+
T Consensus 577 ~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~-l~~Lk~L~Ls~~~~l----~~i 650 (1153)
T PLN03210 577 RWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHS-LTGLRNIDLRGSKNL----KEI 650 (1153)
T ss_pred eeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccccccc-CCCCCEEECCCCCCc----CcC
Confidence 012222222 2344444444321000 011 11122222 444555555444333 333
Q ss_pred ccccCCCCCCCeEEcCCCC-ccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCc--------------
Q 044700 572 PAEIGNLEFLRYLNLSLLK-IAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGT-------------- 636 (795)
Q Consensus 572 p~~i~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-------------- 636 (795)
| .++.+++|++|+|++|. +..+|.+++++++|+.|++++|..++.+|..+ ++++|++|++++|
T Consensus 651 p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~ 728 (1153)
T PLN03210 651 P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNIS 728 (1153)
T ss_pred C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcC
Confidence 3 24444555555554432 33445555555555555555544444444433 3444444444433
Q ss_pred -------ccccCcccc--cccccCCCc--------------------CCCCcceEEEeccC-CCCCCchhhhhcCccEEE
Q 044700 637 -------SLASMPKEI--ERLTRLSAQ--------------------PPEYLMRLEIRDYR-GSTFPSWIDLLSRLTILS 686 (795)
Q Consensus 637 -------~l~~lp~~i--~~L~~L~l~--------------------~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~ 686 (795)
.+..+|..+ .+|..|.+. .+++|+.|++++|. ...+|.+++++++|+.|+
T Consensus 729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 223333221 111111111 13456677777664 344677777888888888
Q ss_pred EeCCCCCCCCCCCCCCCccCeeecccccCceeeCcccc---------CCCCCCCccCCCCCCcceeeecCCccccccccc
Q 044700 687 LKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFL---------GIKSGIASSVTYFPRLKSLKFVNMEEWGDWECE 757 (795)
Q Consensus 687 L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 757 (795)
|++|...+.+|...++++|+.|++++|..+..++.... .....+|..+..+++|++|++.+|+++..++..
T Consensus 809 Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 88877777677655778888888888776654432100 001134455566777777777777777766655
Q ss_pred ccccccccceeeecCCCCCcCC
Q 044700 758 MANVMPCLCSLSFVYCPELKAL 779 (795)
Q Consensus 758 ~~~~~p~L~~L~l~~C~~L~~l 779 (795)
... +++|+.|++++|++|+.+
T Consensus 889 ~~~-L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 889 ISK-LKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccc-ccCCCeeecCCCcccccc
Confidence 444 677777777777777654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-44 Score=378.81 Aligned_cols=276 Identities=34% Similarity=0.579 Sum_probs=226.9
Q ss_pred cchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc
Q 044700 151 VDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA 230 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 230 (795)
||.++++|.++|.....+.++|+|+||||+||||||+++|++..++.+|+.++|++++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999656899999999999999999999999767899999999999999999999999999999987542
Q ss_pred CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCC--c-ccCCCC
Q 044700 231 FSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGS--T-ENIRRA 307 (795)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~--~-~~l~~L 307 (795)
. ....+.++....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. . +++++|
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred c-ccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 14567788999999999999999999999865 4898888888888889999999999999887764 2 999999
Q ss_pred ChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-CHHHHHHHHhhhcccccc---ccccc
Q 044700 308 SDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK-TEKEWQSILDSKMWQVQY---IERHH 383 (795)
Q Consensus 308 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~-~~~~w~~~l~~~~~~~~~---~~~~~ 383 (795)
+.+||++||.+.++... ........+.+++|+++|+|+||||+++|++|+.+ +..+|..++++....... ....+
T Consensus 158 ~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp -HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999997554 22345567889999999999999999999999776 889999999775544422 34678
Q ss_pred cceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCC
Q 044700 384 FVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVH 430 (795)
Q Consensus 384 ~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~ 430 (795)
+.++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|+|.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 89999999999999999999999999999999999999999999987
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=4.1e-22 Score=209.63 Aligned_cols=271 Identities=23% Similarity=0.237 Sum_probs=191.3
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
...++.||++.++....+...+..++.||++.+..|... ..-+|..+.+ +..|.+|||++| .+ .+.|..+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK----nsGiP~diF~-l~dLt~lDLShN-qL----~EvP~~L 122 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK----NSGIPTDIFR-LKDLTILDLSHN-QL----REVPTNL 122 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc----cCCCCchhcc-cccceeeecchh-hh----hhcchhh
Confidence 446788999998888877788888999999999888642 2234444556 899999999999 56 7899999
Q ss_pred CCCCCCCeEEcCCCCccccCcccC-CCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-----cCcccccccc
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELC-GLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-----SMPKEIERLT 649 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~ 649 (795)
.+-+++-+|+||+|+|..+|..+. +|..|-.|||++| .+..+|..+..|.+|++|.|++|.+. .+|+ +..|.
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhh
Confidence 999999999999999999997544 8899999999988 68899999999999999999998543 3331 22222
Q ss_pred cC--------------CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccC
Q 044700 650 RL--------------SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGS 715 (795)
Q Consensus 650 ~L--------------~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 715 (795)
.| .+..+.+|..++++.|+...+|..+.++++|+.|+||+|++.+.-...+...+|++|+++.|.
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ- 279 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ- 279 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-
Confidence 22 223345678888888888888888888888998888888876543334444455555555432
Q ss_pred ceeeCcccc--------------CCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 716 VRKVGNEFL--------------GIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 716 l~~~~~~~~--------------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
++.++...+ -...++|+-++.+.+|+.+...++ +++-+|..... |+.|++|.+..+ .|-.+|+
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcR-C~kL~kL~L~~N-rLiTLPe 356 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCR-CVKLQKLKLDHN-RLITLPE 356 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhh-hHHHHHhccccc-ceeechh
Confidence 222211110 011245566667777777777764 56666555444 777777777655 5666775
Q ss_pred C
Q 044700 782 I 782 (795)
Q Consensus 782 ~ 782 (795)
.
T Consensus 357 a 357 (1255)
T KOG0444|consen 357 A 357 (1255)
T ss_pred h
Confidence 3
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=6.5e-20 Score=225.82 Aligned_cols=269 Identities=22% Similarity=0.309 Sum_probs=155.0
Q ss_pred cceeEEEEEeeCCC-CCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGI-SFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
..++.|.+..+.+. .+|..+..+++|++|++++|. +...+|..+.. +++|++|+|++|... ..+|..++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-----l~~~~p~~~~~-l~~L~~L~L~~n~l~----~~~p~~l~ 209 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-----LVGKIPNSLTN-LTSLEFLTLASNQLV----GQIPRELG 209 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-----ccccCChhhhh-CcCCCeeeccCCCCc----CcCChHHc
Confidence 34555666555543 235555666666666666654 23334444555 566666666665322 44555566
Q ss_pred CCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccccccCC--
Q 044700 577 NLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIERLTRLS-- 652 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~-- 652 (795)
++++|++|+|++|.+. .+|..++++++|++|++++|...+.+|..+.++++|++|++++|.+. .+|..++.+++|.
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 6666666666666555 45555666666666666665444555555666666666666665554 3444444444330
Q ss_pred --------------CcCCCCcceEEEeccCCC-CCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCc
Q 044700 653 --------------AQPPEYLMRLEIRDYRGS-TFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 653 --------------l~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l 716 (795)
+..+++|+.|++++|... .+|.++..+++|+.|++++|.+.+.+|. ++.+++|+.|++++|...
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 112334577787777654 4567777888888888888877766665 777888888888776533
Q ss_pred eeeCccccC-------------CCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcC
Q 044700 717 RKVGNEFLG-------------IKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 717 ~~~~~~~~~-------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
..++..+.. ....+|..+..+++|+.|++.+|......+... ..+++|+.|++++| .+..
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N-~l~~ 442 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNN-NLQG 442 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCEEECcCC-cccC
Confidence 333222211 112334445567777777777764333333322 23778888888877 3443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.5e-19 Score=220.68 Aligned_cols=273 Identities=24% Similarity=0.244 Sum_probs=166.0
Q ss_pred cceeEEEEEeeCCC-CCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGI-SFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
.+++.|++..+.+. .+|..+.++++|++|++++|. +...+|..+.. +++|++|+|++|... ..+|..++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~-l~~L~~L~L~~n~l~----~~~p~~l~ 233 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-----LVGQIPRELGQ-MKSLKWIYLGYNNLS----GEIPYEIG 233 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-----CcCcCChHHcC-cCCccEEECcCCccC----CcCChhHh
Confidence 35566666555543 335556666666666666654 23334444555 566666666665322 34555566
Q ss_pred CCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccccccC---
Q 044700 577 NLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIERLTRL--- 651 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L--- 651 (795)
++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.+. .+|..+.++++|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 6666666666666554 45555666666666666655444555555556666666666655554 344444433333
Q ss_pred -------------CCcCCCCcceEEEeccCCC-CCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCc
Q 044700 652 -------------SAQPPEYLMRLEIRDYRGS-TFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 652 -------------~l~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l 716 (795)
.+..+++|+.|++++|... .+|.+++.+++|+.|++++|.+.+.+|. +..+++|+.|++++|...
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 1123456699999998865 5788999999999999999988765554 666666666666654422
Q ss_pred eeeCccc-------------cCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 717 RKVGNEF-------------LGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 717 ~~~~~~~-------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
..++..+ ......+|..+..+++|+.|++++|......+..... +|+|+.|++++|.-...+|.
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc-CCCCcEEECcCceeeeecCc
Confidence 2221111 1111134455678999999999998544444333333 99999999999966556775
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.2e-19 Score=188.36 Aligned_cols=280 Identities=23% Similarity=0.236 Sum_probs=146.3
Q ss_pred cceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccC
Q 044700 498 VKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~ 576 (795)
+++..+++..+....+|.......+|..|++.+|. +..+-.+.+.. ++.||+|||+.| .+ ..+| ..|.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-----I~sv~se~L~~-l~alrslDLSrN-~i----s~i~~~sfp 170 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-----ISSVTSEELSA-LPALRSLDLSRN-LI----SEIPKPSFP 170 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccc-----cccccHHHHHh-Hhhhhhhhhhhc-hh----hcccCCCCC
Confidence 34455555555555555444445555555555554 33333444444 666666666666 44 3444 2344
Q ss_pred CCCCCCeEEcCCCCccccC-cccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCcccccCc----cccccccc
Q 044700 577 NLEFLRYLNLSLLKIAELP-EELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTSLASMP----KEIERLTR 650 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp----~~i~~L~~ 650 (795)
.-.++++|+|++|.|+.+- ..|.+|.+|-+|.|+.| .+..+|. .|.+|++|+.|+|..|.|..+. .++..|.+
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 4456666666666666553 25566666666666666 3444443 3455666666666666554221 12222222
Q ss_pred C-------------CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccccC
Q 044700 651 L-------------SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSMGS 715 (795)
Q Consensus 651 L-------------~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~ 715 (795)
| .+..+.++++|++..|+...+ -.|+..++.|+.|+||+|.+...-+ ..+.+++|+.|+|++|.
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~- 328 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR- 328 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-
Confidence 2 122345566666666665554 3366666666666666666554332 35556666666666543
Q ss_pred ceeeCcc-ccCCC-------------CCCCccCCCCCCcceeeecCCccccccccc----ccccccccceeeecCCCCCc
Q 044700 716 VRKVGNE-FLGIK-------------SGIASSVTYFPRLKSLKFVNMEEWGDWECE----MANVMPCLCSLSFVYCPELK 777 (795)
Q Consensus 716 l~~~~~~-~~~~~-------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~p~L~~L~l~~C~~L~ 777 (795)
++.++.. |.+.. ..-...+.++++|+.|+|.++.- .|..+ ....+|.|++|.+.++ +|+
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gN-qlk 405 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGN-QLK 405 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCc-eee
Confidence 2222111 10000 00001233456666777666531 12221 2334777888888777 777
Q ss_pred CCC----CCCCcceeccCCC
Q 044700 778 ALP----GIFLSQVIKPVKD 793 (795)
Q Consensus 778 ~lP----~~L~~L~i~~~~~ 793 (795)
.+| .+|..|+..++.+
T Consensus 406 ~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred ecchhhhccCcccceecCCC
Confidence 777 3566666666543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.8e-19 Score=189.91 Aligned_cols=163 Identities=22% Similarity=0.251 Sum_probs=104.3
Q ss_pred ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCC
Q 044700 593 ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTF 672 (795)
Q Consensus 593 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l 672 (795)
.+|.++..|.||..+|++.| .+..+|+.+-++.+|+.|+|++|.|+++...++... +|++|+++.|....+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~--------~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE--------NLETLNLSRNQLTVL 283 (1255)
T ss_pred cCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh--------hhhhhccccchhccc
Confidence 34444444444444444443 344444444444445555555544444433333333 347778888888888
Q ss_pred CchhhhhcCccEEEEeCCCCC-CCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcc
Q 044700 673 PSWIDLLSRLTILSLKDWTNC-EQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEE 750 (795)
Q Consensus 673 p~~i~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 750 (795)
|..+.+++.|+.|.+.+|++. +.+|+ +|+|.+|+.+...+|. ++.+ |..+..|++|+.|.|..+ .
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElV-----------PEglcRC~kL~kL~L~~N-r 350 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELV-----------PEGLCRCVKLQKLKLDHN-R 350 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccC-----------chhhhhhHHHHHhccccc-c
Confidence 888888888888888888764 35555 8888888888887632 3332 344557899999999886 4
Q ss_pred cccccccccccccccceeeecCCCCCcC
Q 044700 751 WGDWECEMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 751 l~~~~~~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
+-.+|..+.- +|.|+.|++.++|+|--
T Consensus 351 LiTLPeaIHl-L~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 351 LITLPEAIHL-LPDLKVLDLRENPNLVM 377 (1255)
T ss_pred eeechhhhhh-cCCcceeeccCCcCccC
Confidence 5455554444 89999999999999864
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=5.6e-17 Score=200.06 Aligned_cols=299 Identities=20% Similarity=0.248 Sum_probs=157.9
Q ss_pred HHHHHHHHHhhcccceeecc-CCcc--------------cCcccceeEEEEEeeCCCCC---CccccccCcceEEeeccC
Q 044700 470 QVHKFVRFLAQNYCASIEVD-GNFE--------------KPRRVKLSHLFLRVSEGISF---PVSVSEVQNLRSLRIQYG 531 (795)
Q Consensus 470 lv~d~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~ 531 (795)
-|||+.+.++++........ +.+. ......++++++..+....+ ...|.+|++|+.|.+..+
T Consensus 489 ~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence 48899998888764433211 1110 01234677777766555433 456889999999999765
Q ss_pred CCcc-cchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEecc
Q 044700 532 SKTC-SLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELN 610 (795)
Q Consensus 532 ~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 610 (795)
.... ......+|..|......|+.|++.++ .+ ..+|..+ .+.+|+.|+|++|.+..+|..+..+++|+.|+|+
T Consensus 569 ~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l----~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PL----RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred cccccccceeecCcchhhcCcccEEEEecCC-CC----CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECC
Confidence 3110 00112233334331245777777766 34 5556555 4566666666666666666666666666666666
Q ss_pred CCCCCCccchhhccCcccceeecCCc-ccccCcccccccccCC---C------------cCCCCcceEEEeccCC-CCCC
Q 044700 611 WCTNLETLPQGMGKLINLEHLLNVGT-SLASMPKEIERLTRLS---A------------QPPEYLMRLEIRDYRG-STFP 673 (795)
Q Consensus 611 ~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~---l------------~~~~~L~~L~l~~~~~-~~lp 673 (795)
+|..+..+|. +..+++|++|++++| .+..+|..++++++|. + ..+.+|+.|.+++|.. ..+|
T Consensus 643 ~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 643 GSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc
Confidence 6655555653 556666666666665 3445665555555440 0 0112234555554431 1122
Q ss_pred chhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCc--------------------eeeCccccCCCCCCCcc
Q 044700 674 SWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSV--------------------RKVGNEFLGIKSGIASS 733 (795)
Q Consensus 674 ~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l--------------------~~~~~~~~~~~~~~~~~ 733 (795)
. ..++|+.|+|++|.+. .+|....+++|+.|.+.++... +.+.-.-......+|..
T Consensus 722 ~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 722 D---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred c---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 1 1234555555555432 2222223444444444432210 00000000011124455
Q ss_pred CCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 734 VTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 734 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
+..+++|+.|++.+|.+++.++... .+++|+.|++++|.+++.+|.
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc
Confidence 5677777777777777777665433 367777777777777666553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-18 Score=179.83 Aligned_cols=250 Identities=18% Similarity=0.161 Sum_probs=152.4
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccc-cc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKI-PA 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-p~ 573 (795)
...++.+|.+.++.+..+ ...|..+.+|-+|.++.|. +..+.+..|+. ++.|+.|+|..|. + ..+ .-
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-----ittLp~r~Fk~-L~~L~~LdLnrN~-i----rive~l 239 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-----ITTLPQRSFKR-LPKLESLDLNRNR-I----RIVEGL 239 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCc-----ccccCHHHhhh-cchhhhhhccccc-e----eeehhh
Confidence 445778888888887766 5667777788888888876 56666777777 8888888888773 3 222 23
Q ss_pred ccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-ccccccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-KEIERLTRL 651 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L 651 (795)
.|.+|++|+.|.|..|+|..+-+ .|..|.++++|+|..|+....--.++.+|++|++|++++|.|..+- .+..-.+
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-- 317 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-- 317 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc--
Confidence 46677777777777777776654 4556777777777776433333344666777777777777666442 2222223
Q ss_pred CCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccccCceeeCccccCCCCC
Q 044700 652 SAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSG 729 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 729 (795)
+|+.|++++|...++++ .+..++.|+.|+|++|.+...-. .|..+.+|+.|+|++|..--.+. .
T Consensus 318 ------kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE-D------- 383 (873)
T KOG4194|consen 318 ------KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-D------- 383 (873)
T ss_pred ------cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-c-------
Confidence 33667777777666644 34466666666666665433222 25566666666666543111110 0
Q ss_pred CCccCCCCCCcceeeecCCcccccccccccccccccceeeecCC
Q 044700 730 IASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYC 773 (795)
Q Consensus 730 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C 773 (795)
-...+.++++|+.|.|.++ +++.++......+++|+.|++.++
T Consensus 384 aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 0112334666666666664 556655555555666666666666
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.7e-19 Score=181.47 Aligned_cols=258 Identities=22% Similarity=0.276 Sum_probs=217.5
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...+..+.+.++....+...+.++..|.+|.+..|. ... +|..+.+ +..+..|+.++| .+ ..+|+.++
T Consensus 44 qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-----l~~-lp~aig~-l~~l~~l~vs~n-~l----s~lp~~i~ 111 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-----LSQ-LPAAIGE-LEALKSLNVSHN-KL----SELPEQIG 111 (565)
T ss_pred hcchhhhhhccCchhhccHhhhcccceeEEEeccch-----hhh-CCHHHHH-HHHHHHhhcccc-hH----hhccHHHh
Confidence 345566677777777777788889999999999886 333 4555666 788899999999 56 78999999
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPP 656 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~ 656 (795)
.+..|+.|++++|.+.++|++++.+..|+.|+..+| .+..+|+++.++.+|..|++.+|++..+|+..-+++.|
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L----- 185 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL----- 185 (565)
T ss_pred hhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH-----
Confidence 999999999999999999999999999999999987 78899999999999999999999999999887778877
Q ss_pred CCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCC
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTY 736 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (795)
++|+...|....+|+.++.+.+|..|+|..|++.. +|.|++|..|++|+++.+ .++.++.+.. ..
T Consensus 186 ---~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N-~i~~lpae~~----------~~ 250 (565)
T KOG0472|consen 186 ---KHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGEN-QIEMLPAEHL----------KH 250 (565)
T ss_pred ---HhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhccc-HHHhhHHHHh----------cc
Confidence 89999999999999999999999999999998754 569999999999999763 3444433332 37
Q ss_pred CCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCCCCCcceecc
Q 044700 737 FPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGIFLSQVIKP 790 (795)
Q Consensus 737 ~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~L~~L~i~~ 790 (795)
+++|..|++.++ ++++.|.+..- +.+|+.|+++|+ .++.+|..|.+|.++.
T Consensus 251 L~~l~vLDLRdN-klke~Pde~cl-LrsL~rLDlSNN-~is~Lp~sLgnlhL~~ 301 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDEICL-LRSLERLDLSNN-DISSLPYSLGNLHLKF 301 (565)
T ss_pred cccceeeecccc-ccccCchHHHH-hhhhhhhcccCC-ccccCCcccccceeee
Confidence 899999999996 78888887665 889999999999 7999999888875543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=3.4e-18 Score=172.18 Aligned_cols=266 Identities=24% Similarity=0.313 Sum_probs=186.8
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
.+..+.|+....+..+.+|+.++.+..|.-|++..|.. ..+| .|.+ |..|..|+++.| .+ ..+|..+
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki------~~lP-ef~g-cs~L~Elh~g~N-~i----~~lpae~ 247 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI------RFLP-EFPG-CSLLKELHVGEN-QI----EMLPAEH 247 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc------ccCC-CCCc-cHHHHHHHhccc-HH----HhhHHHH
Confidence 35678888888888888899999999999999988862 2344 4666 888999999888 56 7788776
Q ss_pred C-CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccc---------
Q 044700 576 G-NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEI--------- 645 (795)
Q Consensus 576 ~-~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i--------- 645 (795)
+ ++.+|..|||+.|+++++|..++.|++|+.||+++| .+..+|.++++| .|+.|-+.||.+..+-..|
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred hcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence 5 899999999999999999999999999999999987 688899999999 9999999988543221110
Q ss_pred ccccc------C-------------------------------------CCcC--------CCCcceEEEeccCCCC---
Q 044700 646 ERLTR------L-------------------------------------SAQP--------PEYLMRLEIRDYRGST--- 671 (795)
Q Consensus 646 ~~L~~------L-------------------------------------~l~~--------~~~L~~L~l~~~~~~~--- 671 (795)
..|.+ + ...| ..-....+++.|...+
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk 405 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK 405 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence 00000 0 0000 0112333333333322
Q ss_pred ---------------------CCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCcccc------
Q 044700 672 ---------------------FPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFL------ 724 (795)
Q Consensus 672 ---------------------lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~------ 724 (795)
+|..++.+++|..|+|++|.+...+..++.+..|+.|+++.+ .....+...+
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLE 484 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHH
Confidence 344455788899999998866665556888888999999875 2333322111
Q ss_pred -------CCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 725 -------GIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 725 -------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
.....-++.+.++.+|..|++.++ .+..+|-..+. |.+|++|.++++| .+ .|.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~Lgn-mtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGN-MTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCC-chhhCChhhcc-ccceeEEEecCCc-cC-CCH
Confidence 011111233678889999999886 67777777777 9999999999995 44 553
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.2e-17 Score=147.50 Aligned_cols=185 Identities=22% Similarity=0.300 Sum_probs=154.1
Q ss_pred ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcccc
Q 044700 515 VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAEL 594 (795)
Q Consensus 515 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l 594 (795)
..+.+++++..|.++.|. +.. .|..+.. +.+|++|++++| .+ .++|.+++.|++|+.|+++-|++..+
T Consensus 27 ~gLf~~s~ITrLtLSHNK-----l~~-vppnia~-l~nlevln~~nn-qi----e~lp~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-----LTV-VPPNIAE-LKNLEVLNLSNN-QI----EELPTSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred ccccchhhhhhhhcccCc-----eee-cCCcHHH-hhhhhhhhcccc-hh----hhcChhhhhchhhhheecchhhhhcC
Confidence 345678888899999887 333 3444666 899999999999 56 89999999999999999999999999
Q ss_pred CcccCCCCcCcEEeccCCCCC-CccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCC
Q 044700 595 PEELCGLWNLQTLELNWCTNL-ETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFP 673 (795)
Q Consensus 595 p~~i~~L~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp 673 (795)
|..|+.++.|+.|||.+|+.. ..+|..|..|..|+-|++++|.+..+|+.+++|++| +-|.+..|..-++|
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~l--------qil~lrdndll~lp 166 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNL--------QILSLRDNDLLSLP 166 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcce--------eEEeeccCchhhCc
Confidence 999999999999999988644 478999999999999999999999999999999988 88999999888899
Q ss_pred chhhhhcCccEEEEeCCCCCCCCCCCCCCC---ccCeeecccccCceee
Q 044700 674 SWIDLLSRLTILSLKDWTNCEQLAPLGNLP---SLESLSLFSMGSVRKV 719 (795)
Q Consensus 674 ~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~---~L~~L~L~~~~~l~~~ 719 (795)
..++.++.|+.|.+.+|.+.-.+|.++++. +=+.+.+.+++-+..+
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 999999999999999998877666666543 2334455555544433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=5.9e-17 Score=179.43 Aligned_cols=266 Identities=26% Similarity=0.330 Sum_probs=181.6
Q ss_pred eeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCC
Q 044700 500 LSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNL 578 (795)
Q Consensus 500 l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l 578 (795)
+.++.+..+..-..| +.+.+.-+|++|++++|.. ..+|..+.. +..|+.|+++.| .+ ..+|.+++++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~------~~fp~~it~-l~~L~~ln~s~n-~i----~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI------SSFPIQITL-LSHLRQLNLSRN-YI----RSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc------ccCCchhhh-HHHHhhcccchh-hH----hhCchhhhhh
Confidence 455555555443333 2233455599999998862 234555566 788999999988 66 7888888999
Q ss_pred CCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCc-ccc------------------
Q 044700 579 EFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGT-SLA------------------ 639 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~------------------ 639 (795)
.+|++|+|.+|.+..+|.++..+.+|+.|++++| ....+|..+..+..+..+..++| .+.
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG 169 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence 9999999999999999999999999999999988 56667766655555544444444 111
Q ss_pred -cCccccccccc-C----------------------------------------------------CCcCCCCcceEEEe
Q 044700 640 -SMPKEIERLTR-L----------------------------------------------------SAQPPEYLMRLEIR 665 (795)
Q Consensus 640 -~lp~~i~~L~~-L----------------------------------------------------~l~~~~~L~~L~l~ 665 (795)
.++.++..++. | ....+.+|++++++
T Consensus 170 ~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 170 GSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDIS 249 (1081)
T ss_pred cchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecc
Confidence 11222222222 1 11235679999999
Q ss_pred ccCCCCCCchhhhhcCccEEEEeCCCCCCC-----------------------CCCCCCCCccCeeecccccCceeeCcc
Q 044700 666 DYRGSTFPSWIDLLSRLTILSLKDWTNCEQ-----------------------LAPLGNLPSLESLSLFSMGSVRKVGNE 722 (795)
Q Consensus 666 ~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-----------------------l~~l~~l~~L~~L~L~~~~~l~~~~~~ 722 (795)
.+....+|+|++.+.+|+.|...+|.++.. ++.++++.+|++|+|..+. +...+..
T Consensus 250 ~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~ 328 (1081)
T KOG0618|consen 250 HNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDN 328 (1081)
T ss_pred hhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchH
Confidence 999999999999999999999988876432 2335668899999997654 2222211
Q ss_pred ccC---------------------------------------CCCCCCccCCCCCCcceeeecCCccccccccccccccc
Q 044700 723 FLG---------------------------------------IKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMP 763 (795)
Q Consensus 723 ~~~---------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p 763 (795)
+.. ........+.+|++|+.|+|+++ .+..++.....+++
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle 407 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLE 407 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchH
Confidence 110 00111234568889999999986 67777776666788
Q ss_pred ccceeeecCCCCCcCCCC
Q 044700 764 CLCSLSFVYCPELKALPG 781 (795)
Q Consensus 764 ~L~~L~l~~C~~L~~lP~ 781 (795)
.|++|+++++ +|+.||.
T Consensus 408 ~LeeL~LSGN-kL~~Lp~ 424 (1081)
T KOG0618|consen 408 ELEELNLSGN-KLTTLPD 424 (1081)
T ss_pred HhHHHhcccc-hhhhhhH
Confidence 8999999988 7888874
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.7e-14 Score=166.56 Aligned_cols=226 Identities=20% Similarity=0.272 Sum_probs=115.6
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
+..++.|.+..+.+..+|..+. ++|++|++++|.. .. +|..+ ..+|+.|+|++| .+ ..+|..+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-----ts-LP~~l---~~~L~~L~Ls~N-~L----~~LP~~l~ 261 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-----TS-IPATL---PDTIQEMELSIN-RI----TELPERLP 261 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-----cc-CChhh---hccccEEECcCC-cc----CcCChhHh
Confidence 3445556666555555554432 3566666655541 11 22222 234566666665 34 34444332
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPP 656 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~ 656 (795)
.+|++|++++|+++.+|..+. .+|+.|++++| .+..+|..+. .+|++|++++|.+..+|..+ +
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l----------~ 324 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPETL----------P 324 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCccc----------c
Confidence 356666666666665555443 35666666655 3444554332 35556666666555554332 1
Q ss_pred CCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCC
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTY 736 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (795)
++|+.|.+++|....+|..+. ++|+.|+|++|.+......+ .++|+.|+|++|. ++.++.. .
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~-------------l 386 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPEN-------------L 386 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCHh-------------H
Confidence 244666777766666665442 56777777777654322222 2567777776643 2221111 1
Q ss_pred CCCcceeeecCCcccccccccc---cccccccceeeecCCC
Q 044700 737 FPRLKSLKFVNMEEWGDWECEM---ANVMPCLCSLSFVYCP 774 (795)
Q Consensus 737 ~~~L~~L~l~~~~~l~~~~~~~---~~~~p~L~~L~l~~C~ 774 (795)
.+.|+.|++++| ++..++... ...+|++..|++.++|
T Consensus 387 ~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 125666777665 444443221 1124666777777664
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.7e-16 Score=139.80 Aligned_cols=162 Identities=29% Similarity=0.403 Sum_probs=143.4
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...+.++.++++.+..+|+.+..+.+|+.|++++|. .+.+|..++. ++.||.|++.-| .+ ..+|..|+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------ie~lp~~iss-l~klr~lnvgmn-rl----~~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------IEELPTSISS-LPKLRILNVGMN-RL----NILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------hhhcChhhhh-chhhhheecchh-hh----hcCccccC
Confidence 456788889999988889999999999999999987 3445666777 999999999988 55 68899999
Q ss_pred CCCCCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCc
Q 044700 577 NLEFLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQ 654 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~ 654 (795)
.++.|+.|||.+|++. .+|..|..+.-|+.|.|+.| ..+.+|..++++++|+.|.+..|.+.++|..++.|+.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l--- 175 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL--- 175 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH---
Confidence 9999999999999987 78988888999999999998 67889999999999999999999999999999999988
Q ss_pred CCCCcceEEEeccCCCCCCchhhhh
Q 044700 655 PPEYLMRLEIRDYRGSTFPSWIDLL 679 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~lp~~i~~l 679 (795)
+.|++.+|....+|+.++.+
T Consensus 176 -----relhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 176 -----RELHIQGNRLTVLPPELANL 195 (264)
T ss_pred -----HHHhcccceeeecChhhhhh
Confidence 99999999998889877754
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.8e-14 Score=163.71 Aligned_cols=228 Identities=19% Similarity=0.291 Sum_probs=156.5
Q ss_pred eeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCC
Q 044700 500 LSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLE 579 (795)
Q Consensus 500 l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 579 (795)
...+.+...++..+|..+. ++|+.|++++|. +.. +|..+ +++|++|++++| .+ ..+|..+. .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-----Lts-LP~~l---~~nL~~L~Ls~N-~L----tsLP~~l~--~ 241 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNE-----LKS-LPENL---QGNIKTLYANSN-QL----TSIPATLP--D 241 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-----CCc-CChhh---ccCCCEEECCCC-cc----ccCChhhh--c
Confidence 3556666666666666553 578888888886 232 33322 457888999888 56 55665543 4
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCc
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYL 659 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L 659 (795)
+|+.|+|++|.+..+|..+. .+|+.|++++| .+..+|..+. .+|++|++++|.++.+|..+. .+|
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp----------~sL 306 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP----------SGI 306 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch----------hhH
Confidence 78889999998888887664 57889999877 5667887664 488999999988888775432 234
Q ss_pred ceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCC
Q 044700 660 MRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPR 739 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 739 (795)
+.|++++|....+|..+ .++|+.|++++|.+......+. ++|+.|++++|. ++.++ .. ..++
T Consensus 307 ~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP-----------~~--lp~~ 368 (754)
T PRK15370 307 THLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLP-----------ET--LPPT 368 (754)
T ss_pred HHHHhcCCccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCC-----------hh--hcCC
Confidence 77888888877777644 3688888998887765332342 688899988764 22221 11 1357
Q ss_pred cceeeecCCcccccccccccccccccceeeecCCCCCcCCCCCC
Q 044700 740 LKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGIF 783 (795)
Q Consensus 740 L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~L 783 (795)
|++|++++| .+..++... .+.|+.|++++| +|+.+|..+
T Consensus 369 L~~LdLs~N-~Lt~LP~~l---~~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPENL---PAALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred cCEEECCCC-cCCCCCHhH---HHHHHHHhhccC-CcccCchhH
Confidence 888999887 455555432 346888888888 788887644
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.2e-13 Score=158.57 Aligned_cols=219 Identities=20% Similarity=0.171 Sum_probs=119.8
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
+..++.|.+..+.+..+|.. .++|++|++++|.. .. +|.. .++|+.|++++| .+ ..+|..
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-----ts-LP~l----p~sL~~L~Ls~N-~L----~~Lp~l-- 280 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-----TS-LPVL----PPGLLELSIFSN-PL----THLPAL-- 280 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-----Cc-ccCc----ccccceeeccCC-ch----hhhhhc--
Confidence 34677888888877776642 57788888888762 22 2221 466788888887 45 455542
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPP 656 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~ 656 (795)
..+|+.|+|++|+++.+|.. +++|+.|++++| .+..+|... .+|+.|++++|.+..+|...
T Consensus 281 -p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~lp----------- 341 (788)
T PRK15387 281 -PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLTSLPTLP----------- 341 (788)
T ss_pred -hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCCc---ccccccccccCccccccccc-----------
Confidence 24577788888888877753 467888888877 455555422 24555666666665555321
Q ss_pred CCcceEEEeccCCCCCCchhh-----------------hhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceee
Q 044700 657 EYLMRLEIRDYRGSTFPSWID-----------------LLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKV 719 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~-----------------~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 719 (795)
.+|+.|++++|....+|.... ...+|+.|+|++|.+.. +|.+ .++|+.|++++|. ++.+
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssI 417 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSL 417 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCC
Confidence 123445555554444443210 11345555555554432 2221 1345555555432 1111
Q ss_pred CccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 720 GNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
|. .+.+|+.|++++| ++..+|..... +++|+.|++++|+
T Consensus 418 -----------P~---l~~~L~~L~Ls~N-qLt~LP~sl~~-L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 -----------PM---LPSGLLSLSVYRN-QLTRLPESLIH-LSSETTVNLEGNP 456 (788)
T ss_pred -----------Cc---chhhhhhhhhccC-cccccChHHhh-ccCCCeEECCCCC
Confidence 11 1234566666654 44555443333 6667777776663
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=4.8e-13 Score=153.60 Aligned_cols=209 Identities=24% Similarity=0.200 Sum_probs=152.6
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
.+++++.|.+..|.+..+|.. .++|++|++++|. +.. +|.. ...|+.|++++| .+ ..+|..
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-----L~~-Lp~l----p~~L~~L~Ls~N-~L----t~LP~~- 300 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-----LTH-LPAL----PSGLCKLWIFGN-QL----TSLPVL- 300 (788)
T ss_pred CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-----hhh-hhhc----hhhcCEEECcCC-cc----cccccc-
Confidence 457899999999988887643 4689999999886 222 3332 466889999999 56 566653
Q ss_pred CCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCc-
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQ- 654 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~- 654 (795)
+++|++|+|++|+++.+|... .+|+.|++++| .+..+|.. ..+|++|++++|+++.+|....++..|.+.
T Consensus 301 --p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~ 371 (788)
T PRK15387 301 --PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLASLPTLPSELYKLWAYN 371 (788)
T ss_pred --ccccceeECCCCccccCCCCc---ccccccccccC-cccccccc---ccccceEecCCCccCCCCCCCcccceehhhc
Confidence 478999999999999888633 35777888887 55667742 247889999999888887655555544211
Q ss_pred --------CCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCC
Q 044700 655 --------PPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGI 726 (795)
Q Consensus 655 --------~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 726 (795)
.+.+|+.|++++|....+|.. .++|+.|++++|.+.. +|.+ ..+|+.|++++|. ++.
T Consensus 372 N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~Nq-Lt~-------- 436 (788)
T PRK15387 372 NRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQ-LTR-------- 436 (788)
T ss_pred cccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCc-ccc--------
Confidence 134789999999998888864 3689999999998765 4542 3578899998744 332
Q ss_pred CCCCCccCCCCCCcceeeecCCcc
Q 044700 727 KSGIASSVTYFPRLKSLKFVNMEE 750 (795)
Q Consensus 727 ~~~~~~~~~~~~~L~~L~l~~~~~ 750 (795)
+|..+..+++|+.|+|++|+-
T Consensus 437 ---LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 437 ---LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ---cChHHhhccCCCeEECCCCCC
Confidence 334455789999999999853
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=2.6e-11 Score=148.86 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=181.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeC-CCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGAS-ADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l 224 (795)
..+|-|+. |.+.|.... ..+++.|+|++|.||||++....+. ++.++|+++. ...++..+...++..+
T Consensus 14 ~~~~~R~r----l~~~l~~~~-~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRER----LLAKLSGAN-NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchH----HHHHHhccc-CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 56677765 444454432 6789999999999999999998862 2368999996 4456777778888877
Q ss_pred cCCcccC---------CCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCChhhHHHHHHh-hcCCCCCcEEEEEcCCh
Q 044700 225 GASASAF---------SSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIEDNSTWESLLQT-LQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 225 ~~~~~~~---------~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~~~~~~~l~~~-l~~~~~gs~iivTtR~~ 292 (795)
....... .............+...+. +.+++|||||+...+......+... +.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 5322110 0011222333333333333 6789999999966543444433333 34445677898999984
Q ss_pred H---HHHh-hCCc-ccCC----CCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-C-
Q 044700 293 S---IADK-IGST-ENIR----RASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK-T- 361 (795)
Q Consensus 293 ~---va~~-~~~~-~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~-~- 361 (795)
. .... .... .++. +|+.+|+.++|....-.. --.+...+|.+.|+|.|+++..++..++.. .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 2 1111 1111 4555 999999999997654111 123456789999999999999998776543 1
Q ss_pred HHHHHHHHhhhcccccc-ccccccceee-eccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHH
Q 044700 362 EKEWQSILDSKMWQVQY-IERHHFVPLW-LSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCF 439 (795)
Q Consensus 362 ~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~ 439 (795)
..... . .+.. ....+...+. -.|+.||++.+..++..|+++ .++.+.+-.. .. .+.+...+
T Consensus 236 ~~~~~---~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~-~~~~~~~L 298 (903)
T PRK04841 236 LHDSA---R----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG-EENGQMRL 298 (903)
T ss_pred hhhhh---H----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC-CCcHHHHH
Confidence 11111 0 1111 0112333222 236799999999999999986 3343222211 11 34457889
Q ss_pred HHHHHcccccccccccCCCCCcEEeeccCHHHHHHHHHHh
Q 044700 440 DQMVARSWFQKFEFEEDDDDGRILRCKMPVQVHKFVRFLA 479 (795)
Q Consensus 440 ~~L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~~~~~ 479 (795)
++|.+.+++... . +.++..| +.|++++++.+...
T Consensus 299 ~~l~~~~l~~~~--~--~~~~~~y--r~H~L~r~~l~~~l 332 (903)
T PRK04841 299 EELERQGLFIQR--M--DDSGEWF--RYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHCCCeeEe--e--cCCCCEE--ehhHHHHHHHHHHH
Confidence 999999986532 1 1144578 78999999987654
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=7.7e-11 Score=129.90 Aligned_cols=293 Identities=16% Similarity=0.185 Sum_probs=177.5
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
+.++||++++++|...|... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..|+.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 68999999999999998442 1245668899999999999999999854322212346777777777888999999999
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCC----hhhHHHHHHhhcCCCCCcE--EEEEcCChHHH
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIED----NSTWESLLQTLQEGRPGSK--ILVTTDDQSIA 295 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs~--iivTtR~~~va 295 (795)
+...... ......++....+.+.+. ++..+||||+++.-. .+.+..+...+.. ..+++ +|.++....+.
T Consensus 110 l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 110 LFGHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred hcCCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 9763211 123345666777777664 456899999995432 2233334333222 22333 56665554432
Q ss_pred Hh--------hCCc-ccCCCCChHhHHHHHHHHhhcC--CCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc-----CC
Q 044700 296 DK--------IGST-ENIRRASDEASWSLFESAAFFN--RSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL-----HF 359 (795)
Q Consensus 296 ~~--------~~~~-~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L-----~~ 359 (795)
.. .... +.+++++.++..+++...+-.. ...-.+..++.+++......|..+.|+.++-.+. ++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 22 2222 7899999999999998876321 1112223334444444444566777777664321 11
Q ss_pred --C-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccCC--CcccChhHHHHH--HHHc--CCCC
Q 044700 360 --K-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPK--DYLINKDELIRS--WMAQ--GYVH 430 (795)
Q Consensus 360 --~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~li~~--W~a~--g~i~ 430 (795)
. +.+....+++... .....-.+..||.+.|..+..++..-+ ...+...++... .+++ |.-.
T Consensus 267 ~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~ 336 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP 336 (394)
T ss_pred CCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 2 6667766665431 111233577899888776655543221 123455555432 2332 2211
Q ss_pred -hhhhhhHHHHHHHHccccccc
Q 044700 431 -KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 431 -~~~~~~~~~~~L~~~sll~~~ 451 (795)
.......|+++|...++|...
T Consensus 337 ~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 337 RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcHHHHHHHHHHHHhcCCeEEE
Confidence 134556699999999999875
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=9.6e-14 Score=154.34 Aligned_cols=252 Identities=23% Similarity=0.243 Sum_probs=168.0
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
..+++++....+........ .--.+|++++++.|. ...+|+.+.. +.+|..|+..+| .+ ..+|..+.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~------l~~lp~wi~~-~~nle~l~~n~N-~l----~~lp~ri~ 284 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH-PVPLNLQYLDISHNN------LSNLPEWIGA-CANLEALNANHN-RL----VALPLRIS 284 (1081)
T ss_pred CcchheeeeccCcceeeccc-cccccceeeecchhh------hhcchHHHHh-cccceEecccch-hH----HhhHHHHh
Confidence 44667777766665533111 234578888888775 2335577777 888999988888 55 67888888
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhcc-Cc-ccceeecCCcccccCccc----cccccc
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGK-LI-NLEHLLNVGTSLASMPKE----IERLTR 650 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-l~-~L~~L~l~~~~l~~lp~~----i~~L~~ 650 (795)
.+.+|++|++.+|.++.+|....++++|++|+|..| .+..+|..+-. +. .|+.|+.+.|.+..+|.. ...|..
T Consensus 285 ~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 888899999999998888888888899999999887 67777765322 22 255555555555544411 111111
Q ss_pred C-------------CCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCc
Q 044700 651 L-------------SAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 651 L-------------~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 716 (795)
| .+..+.+|+.|++++|....+|.. +.++..|+.|+||+|++......+.+++.|++|...+|. +
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l 442 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-L 442 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-e
Confidence 1 123355677888888877777764 447778888888888766555557777777777776532 2
Q ss_pred eeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCC
Q 044700 717 RKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPEL 776 (795)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L 776 (795)
... | .+..++.|+.++++.+ ++..........-|+|+.|++++++++
T Consensus 443 ~~f-----------P-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 443 LSF-----------P-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eec-----------h-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccc
Confidence 211 1 2346788889998875 666655544442489999999988754
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=6.4e-10 Score=115.79 Aligned_cols=181 Identities=18% Similarity=0.173 Sum_probs=116.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH-
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR- 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~- 246 (795)
+..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++.... ..+.......+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~ 113 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELED 113 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHH
Confidence 45689999999999999999999854321 11 12333 33456778899999988876532 122222233333
Q ss_pred ---Hh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCC---CCCcEEEEEcCChHHHHhh------------CCcccCCCC
Q 044700 247 ---KS-IARNRFILVIDDVWIEDNSTWESLLQTLQEG---RPGSKILVTTDDQSIADKI------------GSTENIRRA 307 (795)
Q Consensus 247 ---~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~---~~gs~iivTtR~~~va~~~------------~~~~~l~~L 307 (795)
.. ..+++.++|+||++..+...++.+....... .....|++|.... ..... ...++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 22 3678899999999887766777765433211 2223445555432 22111 111789999
Q ss_pred ChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 044700 308 SDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357 (795)
Q Consensus 308 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L 357 (795)
+.+|..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999987764322111112235788999999999999999988765
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=1.1e-09 Score=119.31 Aligned_cols=296 Identities=13% Similarity=0.125 Sum_probs=170.4
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchh-ccC---ceeEEEEeCCCCCHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVM-RYF---DIRIWVGASADSDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~ 219 (795)
..++||++++++|...|... ......+.|+|++|+|||++++.+++..... ... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 58999999999999998742 1245679999999999999999999843211 111 14578888877788899999
Q ss_pred HHHHhcCCcccCCCCCCChHHHHHHHHHhc--CCCeEEEEEeCCCCCC---hhhHHHHHHhhcC-CC--CCcEEEEEcCC
Q 044700 220 IAEALGASASAFSSQGQELEPYLRYIRKSI--ARNRFILVIDDVWIED---NSTWESLLQTLQE-GR--PGSKILVTTDD 291 (795)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdvw~~~---~~~~~~l~~~l~~-~~--~gs~iivTtR~ 291 (795)
|++++.......+....+..+....+.+.+ .+++++||||+++.-. ...+..+...... .. ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999995211001112234445555555555 3567899999985431 1112222221101 11 22344555543
Q ss_pred hHHHH--------hhCCc-ccCCCCChHhHHHHHHHHhhcC-CCchhhhhHHHHHHHHHHHcCCCchHH-HHHhhhc---
Q 044700 292 QSIAD--------KIGST-ENIRRASDEASWSLFESAAFFN-RSQEVREHLEHIGRKIVQQCHDLPLLI-KIVGRTL--- 357 (795)
Q Consensus 292 ~~va~--------~~~~~-~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~G~PLai-~~lg~~L--- 357 (795)
..... .+... +.+++.+.++..+++..++-.. ......++..+....++....|.|-.+ .++-.+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33211 11122 7899999999999999886311 111122333344555677777887433 3222111
Q ss_pred --C--CC-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccC--CCcccChhHHHHHH--HHc--
Q 044700 358 --H--FK-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFP--KDYLINKDELIRSW--MAQ-- 426 (795)
Q Consensus 358 --~--~~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~li~~W--~a~-- 426 (795)
. .. +.+....+.+.... ....-+...||.+.+..+..++..- ++..+...++...+ +++
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~----------~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~ 324 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK----------DRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI 324 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc
Confidence 1 12 55555555543210 1122355688888776655544221 33345666666532 122
Q ss_pred CCCC-hhhhhhHHHHHHHHccccccc
Q 044700 427 GYVH-KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 427 g~i~-~~~~~~~~~~~L~~~sll~~~ 451 (795)
|... .......++++|...+++...
T Consensus 325 ~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 325 GVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2111 166677788999999999876
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.1e-12 Score=140.44 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=24.8
Q ss_pred CCeEEcCCCCcc-----ccCcccCCC-CcCcEEeccCCCCCC----ccchhhccCcccceeecCCccc
Q 044700 581 LRYLNLSLLKIA-----ELPEELCGL-WNLQTLELNWCTNLE----TLPQGMGKLINLEHLLNVGTSL 638 (795)
Q Consensus 581 L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~l 638 (795)
|++|++++|.+. .+...+..+ ++|+.|++++|.... .++..+..+.+|++|++++|.+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 555555555443 122233334 455555555543221 1222333444455555555444
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.8e-12 Score=131.30 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=108.7
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA- 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~- 573 (795)
.|.....+.+..|++..+ +..|..+++||.|+++.|. +..+-|+.|.. +++|..|-+.++..+ ..+|.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~G-L~~l~~Lvlyg~NkI----~~l~k~ 134 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKG-LASLLSLVLYGNNKI----TDLPKG 134 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc-----hhhcChHhhhh-hHhhhHHHhhcCCch----hhhhhh
Confidence 677888999999999988 4568899999999999987 77888899988 888888888775467 67774
Q ss_pred ccCCCCCCCeEEcCCCCccccC-cccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCcc
Q 044700 574 EIGNLEFLRYLNLSLLKIAELP-EELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTS 637 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 637 (795)
.|++|..|+-|.+.-|++..++ ..+..|++|..|.+..| .+..++. .+..+.+++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 4888999999999999988665 47888999999999987 6777776 58888899988877664
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=5e-12 Score=135.37 Aligned_cols=245 Identities=20% Similarity=0.144 Sum_probs=158.2
Q ss_pred CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccc---ccccccccccCCCCCCCeEEcCCCC
Q 044700 514 PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYE---NMTIKIPAEIGNLEFLRYLNLSLLK 590 (795)
Q Consensus 514 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~lp~~i~~l~~L~~L~L~~~~ 590 (795)
...+..+.+|+.|.+.++...... ...++..+.. .+.|+.|+++++. +. .....++..+.++++|++|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~-~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEA-AKALASALRP-QPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHH-HHHHHHHHhh-CCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 445567788999999998742211 1234445555 7889999999883 32 1112344567789999999999999
Q ss_pred cc-ccCcccCCCC---cCcEEeccCCCCCC----ccchhhccC-cccceeecCCccccc-----CcccccccccCCCcCC
Q 044700 591 IA-ELPEELCGLW---NLQTLELNWCTNLE----TLPQGMGKL-INLEHLLNVGTSLAS-----MPKEIERLTRLSAQPP 656 (795)
Q Consensus 591 l~-~lp~~i~~L~---~L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~l~~-----lp~~i~~L~~L~l~~~ 656 (795)
+. ..+..+..+. +|++|++++|.... .+...+..+ ++|+.|++++|.++. ++..+..++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~------- 165 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR------- 165 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC-------
Confidence 87 3444444444 49999999986442 233456677 899999999998772 223333333
Q ss_pred CCcceEEEeccCCCC-----CCchhhhhcCccEEEEeCCCCCCC----C-CCCCCCCccCeeecccccCceeeCc-cccC
Q 044700 657 EYLMRLEIRDYRGST-----FPSWIDLLSRLTILSLKDWTNCEQ----L-APLGNLPSLESLSLFSMGSVRKVGN-EFLG 725 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~ 725 (795)
+|+.|+++++.... ++..+..+++|+.|++++|.+... + ..+..+++|++|++++|.. +..+. .+..
T Consensus 166 -~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~ 243 (319)
T cd00116 166 -DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALAS 243 (319)
T ss_pred -CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHHH
Confidence 44899999887652 223334556999999999987532 1 2267889999999998752 21110 0000
Q ss_pred CCCCCCccCCCCCCcceeeecCCcccccccc----cccccccccceeeecCCCCCcC
Q 044700 726 IKSGIASSVTYFPRLKSLKFVNMEEWGDWEC----EMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 726 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
......+.|++|++.+|. ++.... .....+++|+.|++++| .+..
T Consensus 244 ------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~ 292 (319)
T cd00116 244 ------ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN-KFGE 292 (319)
T ss_pred ------HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC-CCcH
Confidence 000135799999999984 331111 12223689999999998 4553
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=3.2e-12 Score=129.53 Aligned_cols=243 Identities=22% Similarity=0.211 Sum_probs=163.1
Q ss_pred eCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcC
Q 044700 508 SEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLS 587 (795)
Q Consensus 508 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~ 587 (795)
.+..++|..+. +....+.+..|. +..+.+..|.. +++||.|||++| .+. ..-|..|.++..|-.|-+.
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~-----I~~iP~~aF~~-l~~LRrLdLS~N-~Is---~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQ-----ISSIPPGAFKT-LHRLRRLDLSKN-NIS---FIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCC-----cccCChhhccc-hhhhceeccccc-chh---hcChHhhhhhHhhhHHHhh
Confidence 34455555442 345677888886 67788888998 999999999999 452 4557889999988777666
Q ss_pred C-CCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcc-cccccccCC---C--cC----
Q 044700 588 L-LKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPK-EIERLTRLS---A--QP---- 655 (795)
Q Consensus 588 ~-~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~---l--~~---- 655 (795)
+ |+|+.+|. .|.+|..||.|.+.-|+........+..|++|..|.+.+|.+..++. .+..+.++. + .|
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 5 99999997 78899999999999986666667779999999999999998877765 333333330 0 00
Q ss_pred -----------------------------------------CCCcceE----EEeccCCCCCCc-hhhhhcCccEEEEeC
Q 044700 656 -----------------------------------------PEYLMRL----EIRDYRGSTFPS-WIDLLSRLTILSLKD 689 (795)
Q Consensus 656 -----------------------------------------~~~L~~L----~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 689 (795)
...++.+ ....+.....|. .+..+++|++|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 0000000 011111111121 345788888888888
Q ss_pred CCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccccccccccccccccee
Q 044700 690 WTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSL 768 (795)
Q Consensus 690 ~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L 768 (795)
|++...-+. |.++..++.|.|..|. +..+... .+.++..|+.|+|.++ +++.+....+....+|.+|
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~----------~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNK-LEFVSSG----------MFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcch-HHHHHHH----------hhhccccceeeeecCC-eeEEEecccccccceeeee
Confidence 887765443 8888888888887643 2222211 2346788888999886 5555544444556778888
Q ss_pred eecCCC
Q 044700 769 SFVYCP 774 (795)
Q Consensus 769 ~l~~C~ 774 (795)
++-.+|
T Consensus 352 ~l~~Np 357 (498)
T KOG4237|consen 352 NLLSNP 357 (498)
T ss_pred ehccCc
Confidence 876543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.9e-12 Score=136.93 Aligned_cols=191 Identities=24% Similarity=0.286 Sum_probs=148.3
Q ss_pred eeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCC
Q 044700 500 LSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLE 579 (795)
Q Consensus 500 l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 579 (795)
.....++.+.+..+|..+..|..|..+.++.|.. ..+|..+.. +..|..|||+.| .+ ..+|..++.|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~------r~ip~~i~~-L~~lt~l~ls~N-ql----S~lp~~lC~lp 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI------RTIPEAICN-LEALTFLDLSSN-QL----SHLPDGLCDLP 144 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc------eecchhhhh-hhHHHHhhhccc-hh----hcCChhhhcCc
Confidence 3445566666777777777788888888877752 234555666 788888888888 45 67888887776
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCc
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYL 659 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L 659 (795)
|+.|-+++|+++.+|+.++.+..|..||.+.| .+..+|..++.+.+|+.|.+..|++..+|+.+..|+ |
T Consensus 145 -Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp---------L 213 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP---------L 213 (722)
T ss_pred -ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc---------e
Confidence 88888888888888888888888888888877 677888888888888888888888888888776443 4
Q ss_pred ceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC---CCCCCccCeeecccc
Q 044700 660 MRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP---LGNLPSLESLSLFSM 713 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~ 713 (795)
..|++++|....+|-.|.+++.|++|.|.+|.+...... -|...-.++|+..-|
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 889999999999999999999999999999987654443 355566788888776
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=3.7e-10 Score=114.93 Aligned_cols=197 Identities=19% Similarity=0.200 Sum_probs=102.2
Q ss_pred eeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHH-------
Q 044700 148 TCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSI------- 220 (795)
Q Consensus 148 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i------- 220 (795)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+. ....-..++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHHHHHH
Confidence 789999999999999876 5689999999999999999999983 32211245555554443322 12222
Q ss_pred ---HHHhcCCcccCC------CCCCChHHHHHHHHHhc--CCCeEEEEEeCCCCCC------hhhHHHHHHhhcC--CCC
Q 044700 221 ---AEALGASASAFS------SQGQELEPYLRYIRKSI--ARNRFILVIDDVWIED------NSTWESLLQTLQE--GRP 281 (795)
Q Consensus 221 ---~~~l~~~~~~~~------~~~~~~~~~~~~l~~~l--~~~~~LlVlDdvw~~~------~~~~~~l~~~l~~--~~~ 281 (795)
.+.+........ ............+.+.+ .+++++||+||+.... ..-...+...+.. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 122211110000 00111122222222222 2355999999984322 1223334444433 223
Q ss_pred CcEEEEEcCChHHHHh--------hCCc--ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 282 GSKILVTTDDQSIADK--------IGST--ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 282 gs~iivTtR~~~va~~--------~~~~--~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
...+|++.....+... .+.. +.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+|..|.
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 3344455544544433 1111 8999999999999998865322 111 1234556899999999998876
Q ss_pred H
Q 044700 352 I 352 (795)
Q Consensus 352 ~ 352 (795)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=6.2e-09 Score=116.45 Aligned_cols=297 Identities=18% Similarity=0.189 Sum_probs=193.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC-CCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA-DSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l 224 (795)
...|-|.. +.+.|.... ..+.+.|..++|.|||||+-+.... . ..=..+.|.++.+ +.++..+...++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRAN-DYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 45666655 666666554 7899999999999999999998751 1 1223689999875 457889999999888
Q ss_pred cCCcccC---------CCCCCChHHHHHHHHHhcCC--CeEEEEEeCCCCCChhhHHH-HHHhhcCCCCCcEEEEEcCCh
Q 044700 225 GASASAF---------SSQGQELEPYLRYIRKSIAR--NRFILVIDDVWIEDNSTWES-LLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 225 ~~~~~~~---------~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~ 292 (795)
+...+.. .....+...+.+.+...+.. ++..+||||..-........ +.-.+.....+-.+|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 8543321 11345555666666665553 68999999975433233333 333344556788999999988
Q ss_pred HHHHhhC----Cc-ccCC----CCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-CH
Q 044700 293 SIADKIG----ST-ENIR----RASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK-TE 362 (795)
Q Consensus 293 ~va~~~~----~~-~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~-~~ 362 (795)
.-..... .. ++++ .++.+|+-++|.... +. +-.+..++.+.+..+|.+-|+..++=.++.+ +.
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SL----PLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CC----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 5322211 11 4444 789999999997754 11 1123457789999999999999999888844 33
Q ss_pred HHHHHHHhhhccccccccccccc-eeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHH
Q 044700 363 KEWQSILDSKMWQVQYIERHHFV-PLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQ 441 (795)
Q Consensus 363 ~~w~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~ 441 (795)
+.-...+...... +.. ...--++.||+++|..++-+|+++.- . ..|+..-- +++-+..++++
T Consensus 244 ~q~~~~LsG~~~~-------l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Lt------g~~ng~amLe~ 306 (894)
T COG2909 244 EQSLRGLSGAASH-------LSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALT------GEENGQAMLEE 306 (894)
T ss_pred HHHhhhccchHHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHh------cCCcHHHHHHH
Confidence 3333322211000 000 01113578999999999999998551 1 12222111 16678889999
Q ss_pred HHHcccccccccccCCCCCcEEeeccCHHHHHHHHHHhh
Q 044700 442 MVARSWFQKFEFEEDDDDGRILRCKMPVQVHKFVRFLAQ 480 (795)
Q Consensus 442 L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~~~~~~ 480 (795)
|.+++++-.. -++.+..| +.|.++.||.+.-..
T Consensus 307 L~~~gLFl~~----Ldd~~~Wf--ryH~LFaeFL~~r~~ 339 (894)
T COG2909 307 LERRGLFLQR----LDDEGQWF--RYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHhCCCceee----ecCCCcee--ehhHHHHHHHHhhhc
Confidence 9999966533 12377888 999999999876543
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=6.5e-11 Score=139.26 Aligned_cols=234 Identities=26% Similarity=0.303 Sum_probs=143.2
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCc-ccccccccc-cccCCCCCCCeEEcCCCC-ccc
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSW-YENMTIKIP-AEIGNLEFLRYLNLSLLK-IAE 593 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~lp-~~i~~l~~L~~L~L~~~~-l~~ 593 (795)
..+....|.+.+.+|.. ...+... . ++.|++|-+.+|.. + ..++ ..|..|+.|++|||++|. +..
T Consensus 519 ~~~~~~~rr~s~~~~~~------~~~~~~~-~-~~~L~tLll~~n~~~l----~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKI------EHIAGSS-E-NPKLRTLLLQRNSDWL----LEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred ccchhheeEEEEeccch------hhccCCC-C-CCccceEEEeecchhh----hhcCHHHHhhCcceEEEECCCCCccCc
Confidence 34557788888877751 2222222 2 56799999998842 3 3444 347789999999999775 679
Q ss_pred cCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccccccCCCcCCCCcceEEEeccCCC--
Q 044700 594 LPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIERLTRLSAQPPEYLMRLEIRDYRGS-- 670 (795)
Q Consensus 594 lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~-- 670 (795)
+|++|+.|-+|++|+++++ .+..+|.++.+|.+|.+|++..+.-. .+|..+..|++| ++|.+......
T Consensus 587 LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L--------r~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL--------RVLRLPRSALSND 657 (889)
T ss_pred CChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccc--------cEEEeeccccccc
Confidence 9999999999999999998 78899999999999999999987533 333333336655 55555433211
Q ss_pred -CCCchhhhhcCccEEEEe--------------------------CCCCCCCCCCCCCCCccCeeecccccCceeeCccc
Q 044700 671 -TFPSWIDLLSRLTILSLK--------------------------DWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEF 723 (795)
Q Consensus 671 -~lp~~i~~l~~L~~L~L~--------------------------~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 723 (795)
..-..+.++.+|+.|... +|........++.+++|+.|.+.+|..........
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 011112233333333332 22223334457778888888888877543322111
Q ss_pred cCCCCCCCccCC-CCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCC
Q 044700 724 LGIKSGIASSVT-YFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKAL 779 (795)
Q Consensus 724 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~l 779 (795)
... ... .|++|..+...+|..+...... .. .|+|+.|.+..|+.++.+
T Consensus 738 ~~~------~~~~~f~~l~~~~~~~~~~~r~l~~~-~f-~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 738 ESL------IVLLCFPNLSKVSILNCHMLRDLTWL-LF-APHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccc------chhhhHHHHHHHHhhccccccccchh-hc-cCcccEEEEecccccccC
Confidence 110 001 2556666666555444432211 12 567777777777666653
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=8.2e-12 Score=132.15 Aligned_cols=172 Identities=26% Similarity=0.296 Sum_probs=117.0
Q ss_pred cCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccC
Q 044700 520 VQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELC 599 (795)
Q Consensus 520 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~ 599 (795)
+..-...+++.|. ...+|..++. |-.|..|.|+.| .+ ..+|..++++..|.||+|+.|++..+|..++
T Consensus 74 ltdt~~aDlsrNR------~~elp~~~~~-f~~Le~liLy~n-~~----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 74 LTDTVFADLSRNR------FSELPEEACA-FVSLESLILYHN-CI----RTIPEAICNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred ccchhhhhccccc------cccCchHHHH-HHHHHHHHHHhc-cc----eecchhhhhhhHHHHhhhccchhhcCChhhh
Confidence 3334455555554 2234444555 666777777766 34 5677777777777777777777777777777
Q ss_pred CCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhh
Q 044700 600 GLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLL 679 (795)
Q Consensus 600 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l 679 (795)
.|+ |+.|-+++| .++.+|..++.+..|.+|+.+.|.+..+|+.++.+.+| +.|.+..|....+|..+..|
T Consensus 142 ~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~sl--------r~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 142 DLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSL--------RDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred cCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHH--------HHHHHhhhhhhhCCHHHhCC
Confidence 665 777777765 66777777777777777777777777777777777766 66777777766777776644
Q ss_pred cCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 680 SRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 680 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
+ |..||++.|++...+-.|.+|..|++|-|.+|+
T Consensus 212 p-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 212 P-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred c-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4 777777777766655557777777777777655
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=3.4e-09 Score=113.21 Aligned_cols=275 Identities=14% Similarity=0.111 Sum_probs=144.2
Q ss_pred CceeecchhHHHHHHHHhC---CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
.+|+|+++.++.+..++.. .......+.|+|++|+||||||+.+++. ....+ .++..+ .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 5899999999999888764 2225678899999999999999999983 33222 112111 1111111222222
Q ss_pred HhcCCcccCCCCCCC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh----
Q 044700 223 ALGASASAFSSQGQE-LEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK---- 297 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~---- 297 (795)
.+....--.-.+... .......+...+...+..+|+|+...... +...+ .+.+-|..||+...+...
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHHHh
Confidence 221110000000000 00111122223333333333333211100 00000 123445567775544332
Q ss_pred hCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhccccc
Q 044700 298 IGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQVQ 377 (795)
Q Consensus 298 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~~~ 377 (795)
++..+++++++.++..+++.+.+...+.. --.+.+..|++.|+|.|-.+..+...+. .|....... .+.
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~~~--~I~ 239 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKGDG--VIT 239 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcCCC--CCC
Confidence 33338999999999999999887443221 1235688999999999965555544221 121111100 000
Q ss_pred c-ccccccceeeeccCCChHHHHHHhh-hhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHH-HHHHccccccc
Q 044700 378 Y-IERHHFVPLWLSFTDMPFAVRMCFL-YCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFD-QMVARSWFQKF 451 (795)
Q Consensus 378 ~-~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~-~L~~~sll~~~ 451 (795)
. .-......+...+..|++..+..+. ....|+.+ .+..+.+....- ...+.++..++ .|++.+|++..
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~lg-----~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAALG-----EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHHC-----CCcchHHHHhhHHHHHcCCcccC
Confidence 0 0012223456778889888887775 66677665 455555433321 12456666666 89999999754
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=1.2e-08 Score=108.22 Aligned_cols=267 Identities=14% Similarity=0.090 Sum_probs=144.4
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
.+|||+++.++++..++... ......+.++|++|+|||+||+.+++. ....| ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHHH
Confidence 57999999999999988642 114567889999999999999999983 32222 1222111111111 112222
Q ss_pred HhcCCcccCCCC-CCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh----
Q 044700 223 ALGASASAFSSQ-GQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK---- 297 (795)
Q Consensus 223 ~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~---- 297 (795)
.+....--.-.+ ..-.......+...+.+.+..+|+++..... .|. ..+ .+.+-|..||+...+...
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LDL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ecC---CCeEEEEecCCccccCHHHHhh
Confidence 222111000000 0000112233344444444445555442221 110 011 124455667776544332
Q ss_pred hCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcC-------CC--CHHHHHHH
Q 044700 298 IGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLH-------FK--TEKEWQSI 368 (795)
Q Consensus 298 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~-------~~--~~~~w~~~ 368 (795)
++..+.+++++.++..+++.+.+...+.. -..+....|++.|+|.|-.+..++..+. .. +.+....+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA 225 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 32237899999999999999887432221 1245667899999999976655554221 00 22222222
Q ss_pred HhhhccccccccccccceeeeccCCChHHHHHHhh-hhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHH-HHHHcc
Q 044700 369 LDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFL-YCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFD-QMVARS 446 (795)
Q Consensus 369 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~-~L~~~s 446 (795)
+ ..+..+|..++++.+..+. .++.+..+ .+..+.+.... -.....++..++ .|++++
T Consensus 226 l---------------~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----g~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 226 L---------------EMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----GEDADTIEDVYEPYLLQIG 284 (305)
T ss_pred H---------------HHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----CCCcchHHHhhhHHHHHcC
Confidence 2 1146678889988877666 55666544 34433333221 112556677778 699999
Q ss_pred ccccc
Q 044700 447 WFQKF 451 (795)
Q Consensus 447 ll~~~ 451 (795)
|++..
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99754
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.7e-11 Score=121.74 Aligned_cols=203 Identities=18% Similarity=0.110 Sum_probs=140.8
Q ss_pred ccceeEEEEEeeCCCCCC--ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 497 RVKLSHLFLRVSEGISFP--VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
-++++.+++.++.....+ .....|++++.|+++.|-.. -...+..+... +++|+.|+|+.|... ..... ..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eq-Lp~Le~LNls~Nrl~-~~~~s--~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQ-LPSLENLNLSSNRLS-NFISS--NT 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH---hHHHHHHHHHh-cccchhccccccccc-CCccc--cc
Confidence 346777777777665544 25678999999999988531 12223344555 999999999998422 11111 11
Q ss_pred cCCCCCCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc--cccccccc
Q 044700 575 IGNLEFLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP--KEIERLTR 650 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~ 650 (795)
-..+++|+.|.|+.|.++ .+-..+-.+++|+.|+|.+|..+..-......+..|+.|+|++|.+..++ ..++.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 236789999999999987 34444557899999999998533333333455778999999999888776 34566665
Q ss_pred CCCcCCCCcceEEEeccCCCCC--Cch-----hhhhcCccEEEEeCCCC--CCCCCCCCCCCccCeeeccccc
Q 044700 651 LSAQPPEYLMRLEIRDYRGSTF--PSW-----IDLLSRLTILSLKDWTN--CEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 651 L~l~~~~~L~~L~l~~~~~~~l--p~~-----i~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
| ..|.++.++..++ |+. ...+++|++|++..|++ +..+..+..+++|+.|.+..+.
T Consensus 273 L--------~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 L--------NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred h--------hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 5 7777777776554 443 23789999999999998 5566667788888888865443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=6.5e-10 Score=105.05 Aligned_cols=124 Identities=31% Similarity=0.432 Sum_probs=35.5
Q ss_pred eeeEEecCCCCcccccccccccccC-CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhh-ccCcccc
Q 044700 552 TLRALDLSGQSWYENMTIKIPAEIG-NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGM-GKLINLE 629 (795)
Q Consensus 552 ~L~~L~L~~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~l~~L~ 629 (795)
.++.|+|++| .+ ..+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..++..+ ..+++|+
T Consensus 20 ~~~~L~L~~n-~I----~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGN-QI----STI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccc-cc----ccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 4555666655 33 222 2333 3555566666666555553 3445555666666555 344444333 2455555
Q ss_pred eeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCC----CCCCCCcc
Q 044700 630 HLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLA----PLGNLPSL 705 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L 705 (795)
+|++++|.|..+.. -..+..+++|+.|+|.+|+.+.... .+..+|+|
T Consensus 92 ~L~L~~N~I~~l~~-----------------------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 92 ELYLSNNKISDLNE-----------------------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp EEE-TTS---SCCC-----------------------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred EEECcCCcCCChHH-----------------------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 55555555433210 1223456666677776666554321 04556666
Q ss_pred Ceeeccc
Q 044700 706 ESLSLFS 712 (795)
Q Consensus 706 ~~L~L~~ 712 (795)
+.|+-..
T Consensus 143 k~LD~~~ 149 (175)
T PF14580_consen 143 KVLDGQD 149 (175)
T ss_dssp SEETTEE
T ss_pred heeCCEE
Confidence 6666543
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.2e-09 Score=120.68 Aligned_cols=148 Identities=30% Similarity=0.398 Sum_probs=81.4
Q ss_pred eeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCccccee
Q 044700 552 TLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHL 631 (795)
Q Consensus 552 ~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 631 (795)
+|+.|++++| .+ ..+|..++.+++|+.|++++|++..+|...+.+++|+.|++++| .+..+|..+..+..|++|
T Consensus 141 nL~~L~l~~N-~i----~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDN-KI----ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEEL 214 (394)
T ss_pred hccccccccc-ch----hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhh
Confidence 5566666655 34 44444555566666666666666655555555556666666655 455555554445556666
Q ss_pred ecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecc
Q 044700 632 LNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLF 711 (795)
Q Consensus 632 ~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 711 (795)
.+++|.+...+..+.++.++ ..|.+.++....++..++.+++|+.|++++|.+..... ++.+.+|+.|+++
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l--------~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNL--------SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhcCCcceecchhhhhcccc--------cccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEecc
Confidence 66555444444444444444 44445555544445555666666666666665544333 5666666666665
Q ss_pred ccc
Q 044700 712 SMG 714 (795)
Q Consensus 712 ~~~ 714 (795)
++.
T Consensus 286 ~n~ 288 (394)
T COG4886 286 GNS 288 (394)
T ss_pred Ccc
Confidence 543
No 39
>PF05729 NACHT: NACHT domain
Probab=98.89 E-value=1.1e-08 Score=97.80 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=87.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHH---HHHHHHHHHhcCCcccCCCCCCChHHHH
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVL---SVASSIAEALGASASAFSSQGQELEPYL 242 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 242 (795)
+++.|+|.+|+||||+++.++........ +...+|+......... .+...|..+...... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHHHH
Confidence 58999999999999999999985433322 3456677766543322 344444444332221 111111
Q ss_pred HHHHHhcCCCeEEEEEeCCCCCCh--h-----hHHHHHHhh-cC-CCCCcEEEEEcCChHHH---HhhCCc--ccCCCCC
Q 044700 243 RYIRKSIARNRFILVIDDVWIEDN--S-----TWESLLQTL-QE-GRPGSKILVTTDDQSIA---DKIGST--ENIRRAS 308 (795)
Q Consensus 243 ~~l~~~l~~~~~LlVlDdvw~~~~--~-----~~~~l~~~l-~~-~~~gs~iivTtR~~~va---~~~~~~--~~l~~L~ 308 (795)
.. .....++++||+|++.+-.. . .+..+...+ .. ...+.+++||+|..... ...... +++.+|+
T Consensus 74 ~~--~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QE--LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HH--HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 11 12257899999999844321 1 133333322 22 25789999999988763 223333 8999999
Q ss_pred hHhHHHHHHHHh
Q 044700 309 DEASWSLFESAA 320 (795)
Q Consensus 309 ~~~~~~Lf~~~a 320 (795)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2.5e-09 Score=118.00 Aligned_cols=176 Identities=30% Similarity=0.389 Sum_probs=131.2
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCC-CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLE-FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINL 628 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 628 (795)
++.+..|++.++ .+ ..+|.....+. +|+.|++++|.+..+|..+..+++|+.|++++| .+..+|.....+++|
T Consensus 115 ~~~l~~L~l~~n-~i----~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNN-NI----TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred ccceeEEecCCc-cc----ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 567888888888 55 67777777774 888888888888888878888888888888887 677787777688888
Q ss_pred ceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCee
Q 044700 629 EHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESL 708 (795)
Q Consensus 629 ~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 708 (795)
+.|++++|.+..+|..+..+..| ..|.+++|.....+..+..+.++..|.+.+|.+...+..++.+++|+.|
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L--------~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSAL--------EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred hheeccCCccccCchhhhhhhhh--------hhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 88888888888888766444444 7778888765567777788888888887777766555557788888888
Q ss_pred ecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccc
Q 044700 709 SLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWG 752 (795)
Q Consensus 709 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 752 (795)
+++++. +..+.. +..+.+|+.|+++++....
T Consensus 261 ~~s~n~-i~~i~~------------~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 261 DLSNNQ-ISSISS------------LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccc-cccccc------------ccccCccCEEeccCccccc
Confidence 887643 222211 3467788888888765433
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.8e-10 Score=109.14 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhc
Q 044700 601 LWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLS 680 (795)
Q Consensus 601 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~ 680 (795)
++.|++|||++| .+..+-+++.-+++++.|+++.|.+..+.. +..|. +|+.|++++|....+-.|-.++.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~--------~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELP--------QLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcc--------cceEeecccchhHhhhhhHhhhc
Confidence 344555555555 444555555555555555555555443311 22222 23555555555555555555555
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccCeeeccc
Q 044700 681 RLTILSLKDWTNCEQLAPLGNLPSLESLSLFS 712 (795)
Q Consensus 681 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 712 (795)
|+++|.|++|. .+.+..++++-+|..|++++
T Consensus 353 NIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 353 NIKTLKLAQNK-IETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred CEeeeehhhhh-HhhhhhhHhhhhheeccccc
Confidence 55555555553 23334455555555555554
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=3.3e-09 Score=100.30 Aligned_cols=111 Identities=27% Similarity=0.298 Sum_probs=42.4
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE 596 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~ 596 (795)
+.+..+++.|++.+|.. .. +.. +...+.+|++|+|++| .+ ..+. .+..+++|++|++++|.|+.+++
T Consensus 15 ~~n~~~~~~L~L~~n~I-----~~-Ie~-L~~~l~~L~~L~Ls~N-~I----~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-----ST-IEN-LGATLDKLEVLDLSNN-QI----TKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS-------S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccc-----cc-ccc-hhhhhcCCCEEECCCC-CC----cccc-CccChhhhhhcccCCCCCCcccc
Confidence 44666889999999873 22 122 2212788999999999 56 4554 57789999999999999999876
Q ss_pred cc-CCCCcCcEEeccCCCCCCccc--hhhccCcccceeecCCcccccC
Q 044700 597 EL-CGLWNLQTLELNWCTNLETLP--QGMGKLINLEHLLNVGTSLASM 641 (795)
Q Consensus 597 ~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~l 641 (795)
.+ ..+++|++|++++|+ +..+- ..+..+++|++|++.+|.+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch
Confidence 55 368999999999984 43332 3467889999999999977643
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=1.1e-07 Score=107.29 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=126.9
Q ss_pred CCceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchh---ccCc--eeEEEEeCCCCCHHHH
Q 044700 145 RSETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVM---RYFD--IRIWVGASADSDVLSV 216 (795)
Q Consensus 145 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~ 216 (795)
|+.+.|||+|+++|...|... .....++.|+|.+|.|||+.++.|.+..+.. .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 368999999999999988642 2244678899999999999999998743211 1111 3578888777788899
Q ss_pred HHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcC---CCeEEEEEeCCCCCChhhHHHHHHhhcC-CCCCcEEEE--EcC
Q 044700 217 ASSIAEALGASASAFSSQGQELEPYLRYIRKSIA---RNRFILVIDDVWIEDNSTWESLLQTLQE-GRPGSKILV--TTD 290 (795)
Q Consensus 217 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR 290 (795)
+..|.+++....+. ......+....+...+. +...+||||+|..-....-+.|...+.+ ...+++|+| +|.
T Consensus 834 YqvI~qqL~g~~P~---~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP---NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCCC---ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 99999999654321 23333344555555442 2346899999843221121223333332 234556554 332
Q ss_pred ChH--------HHHhhCCc-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 044700 291 DQS--------IADKIGST-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357 (795)
Q Consensus 291 ~~~--------va~~~~~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L 357 (795)
..+ +...++.. +...+.+.++-.+++..++-.......+..++-+|+.++..-|..-.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 222 11222222 66789999999999999885322222334445555555555455556666555443
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=6.2e-08 Score=97.52 Aligned_cols=151 Identities=14% Similarity=0.233 Sum_probs=92.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+.+.++|.+|+|||+||+++++ +.......+.|+++.... .... .+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~-------------------------~~~~ 87 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSP-------------------------AVLE 87 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhH-------------------------HHHh
Confidence 446789999999999999999998 443344456777654210 0000 1111
Q ss_pred hcCCCeEEEEEeCCCCCC-hhhHHH-HHHhhcCC-CCCcEEEE-EcCC---------hHHHHhhCCc--ccCCCCChHhH
Q 044700 248 SIARNRFILVIDDVWIED-NSTWES-LLQTLQEG-RPGSKILV-TTDD---------QSIADKIGST--ENIRRASDEAS 312 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~va~~~~~~--~~l~~L~~~~~ 312 (795)
.+. +.-+||+||+|... ..+|+. +...+... ..|..+|| |+.. +.+...+... +++++++.++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 112 23489999998642 235553 33333322 24556654 4543 3555554433 89999999999
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 313 WSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
++++.+.++..+-. --++...-|++.+.|..-++..+
T Consensus 167 ~~iL~~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 167 IIVLQRNAYQRGIE----LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHH
Confidence 99999988654321 12456677888888766544433
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=5.1e-10 Score=109.53 Aligned_cols=129 Identities=26% Similarity=0.209 Sum_probs=88.1
Q ss_pred cCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCc
Q 044700 575 IGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQ 654 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~ 654 (795)
+...+.|..||||+|.|+.+-+++.-++.++.|++++|. +..+. ++..|++|++|++++|.+.++.-+-.+|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG----- 352 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLG----- 352 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhc-----
Confidence 334566777888888877777777777788888888773 33332 36777788888888876665533322232
Q ss_pred CCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCC--CCCCCCCCCccCeeeccccc
Q 044700 655 PPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCE--QLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~ 714 (795)
+++.|.+++|....+ +.+.++-+|..||+++|++.. ....+|++|-|+.|.|.+|+
T Consensus 353 ---NIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 ---NIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---CEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 336667777665433 346677788888888887643 45568888888888888776
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=5.1e-08 Score=107.36 Aligned_cols=174 Identities=20% Similarity=0.202 Sum_probs=106.0
Q ss_pred CceeecchhHHH---HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKED---LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
+++||.+..+.. +..++... ....+.++|++|+||||||+.+++. .... |+.++....-.+-++.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 578888877665 77777665 5667889999999999999999983 3223 2333222111111122222
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChH--HHHh
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV--TTDDQS--IADK 297 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--va~~ 297 (795)
..... ..+++.+|++|+++.....+.+.+...+.. |..+++ ||.+.. +...
T Consensus 83 ---------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 83 ---------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred ---------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 11111 245788999999987766667766665543 445554 344432 1111
Q ss_pred hCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 298 IGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 298 ~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
... .+.+.+++.++.+.++.+.+..... ....-..+..+.|++.|+|.|..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 111 2899999999999999886532111 000122456778899999998755443
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-09 Score=112.32 Aligned_cols=190 Identities=19% Similarity=0.133 Sum_probs=115.3
Q ss_pred CCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCC
Q 044700 510 GISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLL 589 (795)
Q Consensus 510 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~ 589 (795)
++.+...=.++++||...+.++...+.... ..... |++++.|||++|-..++ ..+-.....|++|+.|+|+.|
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~----~~~k~-~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIE----EYSKI-LPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchh----hhhhh-CCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccc
Confidence 333333445788999999988764432222 34455 99999999999833222 334455678999999999999
Q ss_pred CccccCcc--cCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcc-cccCcccccccccCCCcCCCCcceEEEe
Q 044700 590 KIAELPEE--LCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTS-LASMPKEIERLTRLSAQPPEYLMRLEIR 665 (795)
Q Consensus 590 ~l~~lp~~--i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~l~~~~~L~~L~l~ 665 (795)
++.....+ -..+.+|..|.|+.|.... .+-......++|..|++.+|. +..-......+ ..|+.|+++
T Consensus 183 rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--------~~L~~LdLs 254 (505)
T KOG3207|consen 183 RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--------QTLQELDLS 254 (505)
T ss_pred cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--------hHHhhcccc
Confidence 98754332 2257888999999885442 233334567888888888873 21111111111 223666777
Q ss_pred ccCCCCCC--chhhhhcCccEEEEeCCCCCC-CCCC------CCCCCccCeeeccccc
Q 044700 666 DYRGSTFP--SWIDLLSRLTILSLKDWTNCE-QLAP------LGNLPSLESLSLFSMG 714 (795)
Q Consensus 666 ~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~-~l~~------l~~l~~L~~L~L~~~~ 714 (795)
+|..-.++ .-++.++.|+.|+++.|.+.. ..|+ ...+|+|++|++..|+
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 66655554 234566777777777666543 1222 2456666666666544
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=1.3e-09 Score=109.50 Aligned_cols=245 Identities=21% Similarity=0.201 Sum_probs=153.6
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc-------cCCCCCCCeEEcCC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE-------IGNLEFLRYLNLSL 588 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~-------i~~l~~L~~L~L~~ 588 (795)
.+..+..+..+++++|..+. .-...+...+.+ .+.|+.-+++.. ...+....+|+. +-..++|++||||.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~-EAa~~i~~~L~~-~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGT-EAARAIAKVLAS-KKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhH-HHHHHHHHHHhh-cccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 44567778888888886421 122334455555 678888888876 343333444433 34557899999999
Q ss_pred CCcc-c----cCcccCCCCcCcEEeccCCCCCCccch--------------hhccCcccceeecCCcccccCcccccccc
Q 044700 589 LKIA-E----LPEELCGLWNLQTLELNWCTNLETLPQ--------------GMGKLINLEHLLNVGTSLASMPKEIERLT 649 (795)
Q Consensus 589 ~~l~-~----lp~~i~~L~~L~~L~L~~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~l~~lp~~i~~L~ 649 (795)
|.+. . +-.-+.++..|++|.|.+|. ++.... -+.+-++|+.+...+|.+..-+....
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~--- 177 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL--- 177 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH---
Confidence 9876 2 22346678899999999884 332211 13445689999999887764432100
Q ss_pred cCCCcCCCCcceEEEeccCCCC-----CCchhhhhcCccEEEEeCCCCCCC----CC-CCCCCCccCeeecccccCceee
Q 044700 650 RLSAQPPEYLMRLEIRDYRGST-----FPSWIDLLSRLTILSLKDWTNCEQ----LA-PLGNLPSLESLSLFSMGSVRKV 719 (795)
Q Consensus 650 ~L~l~~~~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~l~~~ 719 (795)
...+..++.|+.+.+..|.+.. +-..+..+++|+.|+|.+|.+... +. .++.+|+|+.|++++|.. +.-
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~~ 256 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENE 256 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-ccc
Confidence 0011223455888888876532 122345899999999999987642 22 277889999999999862 222
Q ss_pred Ccc-ccCCCCCCCccCCCCCCcceeeecCCccccc----ccccccccccccceeeecCCCCC
Q 044700 720 GNE-FLGIKSGIASSVTYFPRLKSLKFVNMEEWGD----WECEMANVMPCLCSLSFVYCPEL 776 (795)
Q Consensus 720 ~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~p~L~~L~l~~C~~L 776 (795)
|.. +.. .....+|+|+.|.+.+|..-.+ +...... .|.|.+|++++| .+
T Consensus 257 Ga~a~~~------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 257 GAIAFVD------ALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGN-RL 310 (382)
T ss_pred cHHHHHH------HHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcc-cc
Confidence 211 111 0113589999999999743222 1112334 899999999999 45
No 49
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=9.5e-08 Score=87.39 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=80.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh---ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM---RYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 244 (795)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+.+.|+.+++.... ...+..++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHHH
Confidence 35789999999999999999999843110 003456799998888999999999999998765 34566777788
Q ss_pred HHHhcCCCe-EEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCC
Q 044700 245 IRKSIARNR-FILVIDDVWIE-DNSTWESLLQTLQEGRPGSKILVTTDD 291 (795)
Q Consensus 245 l~~~l~~~~-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 291 (795)
+.+.+...+ .+||+|++..- ..+.++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 887776544 59999999543 4444555544333 566777776554
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.3e-06 Score=94.43 Aligned_cols=193 Identities=18% Similarity=0.147 Sum_probs=110.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++...-....... .+.....- +.+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c----~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIIC----KEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHH----HHHhcCCC
Confidence 579999999999999988753 34567899999999999999998732110000000 00000000 00000000
Q ss_pred CCcccCCC-CCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhC
Q 044700 226 ASASAFSS-QGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~ 299 (795)
........ .....+++...+... ..+++-++|+|++.......++.+...+.......++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 00000000 001122222211111 12455699999997766667888888887666677777766544 3333322
Q ss_pred C---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 300 S---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 300 ~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
. .+++.+++.++..+.+...+...+.. -.++.+..|++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 2 29999999999998888766432211 12345678889999988643
No 51
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=5.2e-06 Score=87.50 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=100.2
Q ss_pred CceeecchhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
..|+||+.+..++...|...+. ..+++.|+|++|+|||||++.+..... + ...+++.. +..++++.|+.+|
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHc
Confidence 7999999999999999975433 456999999999999999999997432 1 13333333 6799999999999
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhc-C-CCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhC--
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSI-A-RNRFILVIDDVWIED-NSTWESLLQTLQEGRPGSKILVTTDDQSIADKIG-- 299 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~-- 299 (795)
+.+... ....-.+.+.+.+.+.- . +++.+||+-=-.-.+ .-.+.+.. .+.....-|.|++---.+.+.....
T Consensus 334 GV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 334 GVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred CCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccC
Confidence 974321 01112233333333322 3 667777774210011 11222222 2334456678887654444322211
Q ss_pred Cc---ccCCCCChHhHHHHHHHH
Q 044700 300 ST---ENIRRASDEASWSLFESA 319 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~ 319 (795)
+. |-+++++.++|...-.+.
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 11 889999999998876654
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.2e-06 Score=92.89 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=117.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc----chhccCceeEEEEe-CCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY----KVMRYFDIRIWVGA-SADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~~~~i 220 (795)
.+++|-+..++.+.+++..+. -...+.++|+.|+||||+|+.+++.. ....|+|...|... +....+++ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 578899999999999997763 45677899999999999999988721 12345565555442 22223323 2233
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHH-HhhC
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIA-DKIG 299 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va-~~~~ 299 (795)
.+.+.... ..+++-++|+|++...+...++.+...+..-..++.+|++|.+.+.. ....
T Consensus 82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 33332211 12456677778776666778999999998777889999888766432 2222
Q ss_pred C---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 300 S---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 300 ~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
. .+++.+++.++....+.+.. .+. ..+.++.++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~-~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKY-NDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHh-cCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 28999999999987776543 111 1233667889999998765443
No 53
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=4.6e-07 Score=107.54 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=164.2
Q ss_pred ceeecchhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe---CCCC---CHHHHHHH
Q 044700 147 ETCGVDEEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA---SADS---DVLSVASS 219 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~---~~~~~~~~ 219 (795)
.++||+.+++.|...+..-.. ...++.+.|..|||||+|++.|.. .+.+.+...+--.+ ..+. ...+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 368999999999999876443 567999999999999999999998 44333221111111 1111 12344445
Q ss_pred HHHHhcCC-------------------cccC------------------CCCCCChHH-----HHHHHHHhc-CCCeEEE
Q 044700 220 IAEALGAS-------------------ASAF------------------SSQGQELEP-----YLRYIRKSI-ARNRFIL 256 (795)
Q Consensus 220 i~~~l~~~-------------------~~~~------------------~~~~~~~~~-----~~~~l~~~l-~~~~~Ll 256 (795)
++.++... .... ......... ....+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 55444211 1000 000111111 112222223 4569999
Q ss_pred EEeCCCCCChhhHHHHHHhhcCCCC----CcEE--EEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCc
Q 044700 257 VIDDVWIEDNSTWESLLQTLQEGRP----GSKI--LVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQ 326 (795)
Q Consensus 257 VlDdvw~~~~~~~~~l~~~l~~~~~----gs~i--ivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~ 326 (795)
|+||+...|....+-+......... -..+ +.|.+.. ......... +.+.||+..+...+.....-..
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 9999977766566555444433220 1122 2233332 111121221 9999999999999998765211
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-------CHHHHHHHHhhhccccccccccccceeeeccCCChHHHH
Q 044700 327 EVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK-------TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVR 399 (795)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~-------~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k 399 (795)
.....+....|+++..|+|+.+..+-..+... +...|..=..+. .....-+++...+..-.+.||...|
T Consensus 236 --~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 236 --KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred --ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHHHH
Confidence 22345678899999999999998888777653 333333211110 0011111233446777889999999
Q ss_pred HHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHHccccc
Q 044700 400 MCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVARSWFQ 449 (795)
Q Consensus 400 ~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~~sll~ 449 (795)
......|++-..+ +...|...|-.- ....+....+.|....++-
T Consensus 312 ~Vl~~AA~iG~~F--~l~~La~l~~~~----~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 312 EVLKAAACIGNRF--DLDTLAALAEDS----PALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHHHHhCccC--CHHHHHHHHhhc----hHHHHHHHHHHhHhhceec
Confidence 9999999997554 555555544321 1445555555555544443
No 54
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=1.2e-07 Score=86.13 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
.+++.|.|+.|+|||||+++++.+.. ....++|+++.......... .+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~--------------------~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD--------------------PD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh--------------------hh-hHHHHHHh
Confidence 47899999999999999999997432 23456777765443211000 00 22333343
Q ss_pred cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhC-----Cc---ccCCCCChHhH
Q 044700 249 IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIG-----ST---ENIRRASDEAS 312 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~-----~~---~~l~~L~~~~~ 312 (795)
...++.+|+||++... ..|......+.+.....+|++|+.+......-. .. ++|.||+..|.
T Consensus 58 ~~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4447789999999543 578887777777666789999998887664311 11 78899987763
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=5.6e-07 Score=83.92 Aligned_cols=125 Identities=23% Similarity=0.178 Sum_probs=75.3
Q ss_pred eecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 044700 149 CGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASA 228 (795)
Q Consensus 149 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 228 (795)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47888999999998775 557899999999999999999998432 222356677665443322211111000
Q ss_pred ccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC------CCCcEEEEEcCChH
Q 044700 229 SAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG------RPGSKILVTTDDQS 293 (795)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 293 (795)
............++.++|+||++.........+...+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999754222333333333332 36778888887553
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.58 E-value=1.1e-06 Score=94.67 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=109.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-Cc-eeEEEEeCCCCCHHHHHHHHH--
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-FD-IRIWVGASADSDVLSVASSIA-- 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~-- 221 (795)
++++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++. .... +. ..+.++++.-.+. ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQ--GKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhc--chhhhhcC
Confidence 57899999999999998776 4557889999999999999999873 2222 22 2344544321100 000000
Q ss_pred ----HHhcCCcccCCCCCCChHHHHHHHHHh---c--CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 222 ----EALGASASAFSSQGQELEPYLRYIRKS---I--ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 222 ----~~l~~~~~~~~~~~~~~~~~~~~l~~~---l--~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
..++.... ......+.....++.. . .+.+-+||+||+..........+...+.......++|+||...
T Consensus 89 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 89 PRFAHFLGTDKR---IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cchhhhhhhhhh---hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00000000 0001112222222221 1 2344589999995554445555666665545567788777543
Q ss_pred H-HHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 293 S-IADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 293 ~-va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
. +....... +++.+++.++....+.+.+...+.. --.+..+.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 2 22222222 8889999999998888876433221 124567788888888765443
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.58 E-value=3e-07 Score=94.94 Aligned_cols=157 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCC
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQE 237 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 237 (795)
|..++..+ .+.-+..||++|+||||||+.+.. .....| ..++...+-.+=
T Consensus 39 lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkd--------------------- 88 (436)
T COG2256 39 LRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKD--------------------- 88 (436)
T ss_pred HHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHH---------------------
Confidence 33444444 677788999999999999999998 444444 333332221122
Q ss_pred hHHHHHHH-HHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChHH--HHhh--CCc-ccCCCCCh
Q 044700 238 LEPYLRYI-RKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV--TTDDQSI--ADKI--GST-ENIRRASD 309 (795)
Q Consensus 238 ~~~~~~~l-~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v--a~~~--~~~-~~l~~L~~ 309 (795)
+.++.+.- +....+++.+|++|.|..-+..+-+.+... -..|.-|+| ||.++.. -... ... +++++|+.
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~ 165 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSS 165 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCH
Confidence 22222222 223358999999999977666565555444 456777776 6665532 1111 122 99999999
Q ss_pred HhHHHHHHHHhhcCC-Cch-hhh-hHHHHHHHHHHHcCCCc
Q 044700 310 EASWSLFESAAFFNR-SQE-VRE-HLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 310 ~~~~~Lf~~~a~~~~-~~~-~~~-~~~~~~~~i~~~c~G~P 347 (795)
++-.+++.+.+.... ... ... -.++.-..++..++|--
T Consensus 166 ~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 166 EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 999999988432111 100 001 11345566777777754
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.58 E-value=1e-06 Score=89.12 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=98.1
Q ss_pred cchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc
Q 044700 151 VDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA 230 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 230 (795)
.+..++.+.+++... ....|.|+|.+|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH----------
Confidence 345677777776543 5678999999999999999999983 333334456665543211 00
Q ss_pred CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChh-h-HHHHHHhhcC-CCCCcEEEEEcCChH---------HHHhh
Q 044700 231 FSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNS-T-WESLLQTLQE-GRPGSKILVTTDDQS---------IADKI 298 (795)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~-~-~~~l~~~l~~-~~~gs~iivTtR~~~---------va~~~ 298 (795)
. .+...+.+ .-+||+||+..-... . .+.+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 01111222 238999999653322 2 3334443332 123457888887532 22233
Q ss_pred C--CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 299 G--STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 299 ~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
. ..+++.+++.++...++...+-..+-. --.+..+.+++.+.|.|..+..+-
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHH
Confidence 2 238999999999999987755322211 123455677777888887665543
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.5e-06 Score=96.86 Aligned_cols=178 Identities=21% Similarity=0.183 Sum_probs=114.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc------------------------cCce
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR------------------------YFDI 201 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F~~ 201 (795)
+++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+..--.. .|.-
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 579999999999999998763 345678999999999999999887321100 0001
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhc
Q 044700 202 RIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQ 277 (795)
Q Consensus 202 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~ 277 (795)
.++++.+. ...++++.+.+... ..++.-++|+|++...+...++.|...+.
T Consensus 95 viEIdAas-------------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 95 YIEMDAAS-------------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred ceEecccc-------------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 11111111 12233333333222 13566799999998777778888888886
Q ss_pred CCCCCcEEE-EEcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 278 EGRPGSKIL-VTTDDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 278 ~~~~gs~ii-vTtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.-..+.++| +||....+...+.+. +.++.++.++..+.+.+.+-..+.. ...+..+.|++.++|.|.....+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 655555655 455444554333322 9999999999999888765322211 11345678899999999654443
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.7e-06 Score=96.73 Aligned_cols=176 Identities=18% Similarity=0.141 Sum_probs=112.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc-------------------cCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR-------------------YFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 206 (795)
+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++..--.. .|--++.++
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 589999999999999998763 356889999999999999999987321000 010111121
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.+.. ...+++...+... ..++.-++|+|++...+....+.+...+.....+
T Consensus 94 AAs~-------------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 94 AASR-------------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred cccc-------------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 1223332222211 2356678999999776667788888888766566
Q ss_pred cEEEEEcCCh-HHHHhhCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 283 SKILVTTDDQ-SIADKIGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 283 s~iivTtR~~-~va~~~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
.++|++|.+. .+...... .+++++++.++..+.+.+.+-..+.. --.+....|++.++|.+..+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 7777777554 23222112 29999999999999888776433221 123456788889999875443
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.7e-06 Score=99.65 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=114.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-------------------CceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-------------------FDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 206 (795)
.++||-+..+..|.+++..+. -...+.++|..|+||||+|+.+++...-... |.-+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 589999999999999988762 3445689999999999999999984311111 10111221
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH-hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK-SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI 285 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 285 (795)
.+....+ ..+.++...+.. -..+++-++|||++.......++.|...+..-....++
T Consensus 95 Aas~~kV----------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 95 AASRTKV----------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred cccccCH----------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 1111111 111222222211 12467779999999877778888888888765566677
Q ss_pred EEEcCCh-HHHHhhCC--c-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 286 LVTTDDQ-SIADKIGS--T-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 286 ivTtR~~-~va~~~~~--~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
|++|.+. .+...+.. . +++++|+.++....+.+.+-..+. ....+....|++.++|.|-.+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6655443 44332221 2 999999999999988876532211 112456778999999988644433
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.6e-06 Score=97.87 Aligned_cols=177 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc-------------------cCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR-------------------YFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 206 (795)
+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-.. .|...++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 589999999999999998763 345668999999999999998877321111 111122222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.+.. ...+++...+... ..++.-++|||++...+...++.+...+..-...
T Consensus 95 Aas~-------------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 95 AASN-------------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred cccc-------------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 2111 1222222222221 1345568899999877777889888888766667
Q ss_pred cEEEEEcCChH-HHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHH
Q 044700 283 SKILVTTDDQS-IADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKI 352 (795)
Q Consensus 283 s~iivTtR~~~-va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~ 352 (795)
.++|+||.+.. +...+... +.++.++.++..+.+.+.+-..+.. -..+..+.|++.++|..- |+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78877776653 32222222 9999999999999998766332211 124566788899988663 4443
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.55 E-value=1.3e-07 Score=92.28 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=32.4
Q ss_pred ceeecchhHHHHHHHHhCC-CCCCcEEEEEcCCCChHHHHHHHHhcCc
Q 044700 147 ETCGVDEEKEDLVSKLLSS-STEIPIISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
.||||+++++++...|... ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999422 2267999999999999999999999843
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=3.1e-06 Score=94.01 Aligned_cols=196 Identities=19% Similarity=0.171 Sum_probs=114.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++...-..... ...+..+....+ -..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcCC
Confidence 578999999998888777652 346889999999999999999987321111100 000000110000 00000000
Q ss_pred cCCcccCC-CCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChHHHHhh
Q 044700 225 GASASAFS-SQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV-TTDDQSIADKI 298 (795)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~~~ 298 (795)
.......+ ......+++...+... +.+++-++|+|+++.-....++.+...+......+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00000000 0112223333322221 245677999999988777789999888876666666664 55555554433
Q ss_pred CCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 299 GST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 299 ~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
... +++.+++.++....+.+.+-..+... ..+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 322 89999999999999988874333211 1345677888999987443
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3e-06 Score=94.66 Aligned_cols=181 Identities=22% Similarity=0.193 Sum_probs=111.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh-------------------ccCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM-------------------RYFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 206 (795)
.+++|-+..+..+...+.... ....+.++|+.|+||||+|+.+++...-. ..|...++++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 579999999999999997752 34567899999999999999998721100 0121222232
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI 285 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 285 (795)
......++ +..++.+.+... ..+++-++|+|++...+...++.+...+......+.+
T Consensus 95 aas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 95 AASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred cccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22211111 112222222211 2356679999999777777888888888876566666
Q ss_pred EE-EcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHH
Q 044700 286 LV-TTDDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIV 353 (795)
Q Consensus 286 iv-TtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~l 353 (795)
|+ ||....+....... +++.+++.++....+.+.+-..+- .-.......|++.++|.+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 64 55444444332222 999999999988887765532221 1124456778888998764 44333
No 66
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=1.9e-06 Score=83.33 Aligned_cols=176 Identities=19% Similarity=0.230 Sum_probs=101.7
Q ss_pred CceeecchhHHHHHHHHhC---CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
++|||.++-++.+.-++.. ..+...-+.+||++|+||||||.-+++ +....|. +++. +
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg--~------------ 84 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSG--P------------ 84 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEEC--C------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccc--h------------
Confidence 6899999888876655542 233677899999999999999999999 4444442 2221 1
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC--------CCCc-----------
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG--------RPGS----------- 283 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs----------- 283 (795)
......++...+.. + +++-+|++|++..-+..+-+.+...+.++ +.++
T Consensus 85 -----------~i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 85 -----------AIEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -----------C--SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -----------hhhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11112233333332 2 24558888999877766677777766553 1122
Q ss_pred EEEEEcCChHHHHhhCCc----ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 044700 284 KILVTTDDQSIADKIGST----ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357 (795)
Q Consensus 284 ~iivTtR~~~va~~~~~~----~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L 357 (795)
-|=.|||...+....... .++...+.+|-.++..+.+-.-+- +-.++.+.+|++.+.|-|--+.-+-+..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 223588876665544443 579999999999999877632221 2235678999999999997555444433
No 67
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=3e-07 Score=95.63 Aligned_cols=268 Identities=18% Similarity=0.183 Sum_probs=175.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
..+.+.++|.|||||||++-.+.. +..-| +.+.++....-.|...+.-.....++.... +.+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 468999999999999999999987 45567 566677766666666666666665666543 2233455666
Q ss_pred HhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCCcccCCCCCh-HhHHHHHHHHhhcCCC
Q 044700 247 KSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGSTENIRRASD-EASWSLFESAAFFNRS 325 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~l~~L~~-~~~~~Lf~~~a~~~~~ 325 (795)
.....+|.++|+||.-+- ..+-..+...+..+...-.|+.|+|....... .....++.|+. +++.++|...+.....
T Consensus 83 ~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~g-e~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 83 RRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVAG-EVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcccc-cccccCCccccCCchhHHHHHHHHHhcc
Confidence 777889999999997211 11222233344444455567788876543221 11266777765 4788998877632221
Q ss_pred c-hhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhccccccc-------cccccceeeeccCCChHH
Q 044700 326 Q-EVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQVQYI-------ERHHFVPLWLSFTDMPFA 397 (795)
Q Consensus 326 ~-~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~~~~~-------~~~~~~~l~~sy~~L~~~ 397 (795)
. .....-.....+|.+...|.|++|...++..+.-.+.+-.+-++.....+.+. +....+.+.+||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1 22233467888999999999999999999888876666666555433322222 256788999999999999
Q ss_pred HHHHhhhhcccCCCcccChhHHHHHHHHcCCCC--hhhhhhHHHHHHHHccccccc
Q 044700 398 VRMCFLYCAIFPKDYLINKDELIRSWMAQGYVH--KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 398 ~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~--~~~~~~~~~~~L~~~sll~~~ 451 (795)
.+--|--++.|...+... ...|.+-|-.. +.-..-..+..++++|++...
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 999999999998887544 33444444321 122223345567777776654
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.2e-06 Score=94.33 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=114.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
++++|-+..++.|..++.... -...+.++|++|+||||+|+.+++...-...+...+|.|.+.. .+......-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 578999999999988888763 3456799999999999999999884321122222333332110 00000000000000
Q ss_pred CCcccCCCCCCChHHHH---HHHHH-hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC-ChHHHHhhCC
Q 044700 226 ASASAFSSQGQELEPYL---RYIRK-SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTD-DQSIADKIGS 300 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~va~~~~~ 300 (795)
.. .....+++. ..+.. -..+++-++|+|+++......++.+...+........+|++|. ...+......
T Consensus 92 ~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 111122222 22211 1234667999999987776788888888876555656665554 3343332322
Q ss_pred c---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 301 T---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 301 ~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
. +++.+++.++..+.+.+.+...+... ..+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 2 99999999999999988774433211 2456788999999988544
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.49 E-value=1.7e-06 Score=99.27 Aligned_cols=205 Identities=19% Similarity=0.153 Sum_probs=122.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC---ceeEEEEeCCC---CCHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF---DIRIWVGASAD---SDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~~ 219 (795)
++++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 57999999999998888654 56789999999999999999998754332222 12345554321 222222111
Q ss_pred H---------------HHHhcCCcc-------------cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHH
Q 044700 220 I---------------AEALGASAS-------------AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWES 271 (795)
Q Consensus 220 i---------------~~~l~~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~ 271 (795)
+ +...+.... -.+....-....+..+.+.+..+++.++-|+.|..+...|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1 111111000 000001111235677888888899999988887777677888
Q ss_pred HHHhhcCCCCCcEEEE--EcCChHH-HHhhCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC
Q 044700 272 LLQTLQEGRPGSKILV--TTDDQSI-ADKIGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD 345 (795)
Q Consensus 272 l~~~l~~~~~gs~iiv--TtR~~~v-a~~~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 345 (795)
+...+....+...+++ ||++... ...+.. .+.+.+++.+|.+.++.+.+-..+. .. -.+..+.|++.+..
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIARYTIE 387 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHCCCc
Confidence 8777776666555555 5664432 222211 1788999999999999987632211 11 13344555555544
Q ss_pred CchHHHHHhhh
Q 044700 346 LPLLIKIVGRT 356 (795)
Q Consensus 346 ~PLai~~lg~~ 356 (795)
-+-|+..++..
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 45566655543
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.48 E-value=3.5e-06 Score=89.59 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=107.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
.+++|.++.++.|.+++... ....+.++|++|+||||+|+.+++.. ....|. .++-++.+...... ..+.+++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHH
Confidence 57899999888888887765 45567899999999999999998832 112232 12222222222222 222322222
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhC---C
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIG---S 300 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~---~ 300 (795)
..... ..-.++.-++|+|++..........+...+......+++++++... .+..... .
T Consensus 89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 11100 0002456699999997666556666766665545667777766433 2222111 2
Q ss_pred cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 301 TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 301 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
.+++++++.++....+...+-..+-.-. .+....|++.++|-.-
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 2899999999999988887743322111 3456788888888664
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.44 E-value=6.6e-06 Score=88.00 Aligned_cols=177 Identities=16% Similarity=0.103 Sum_probs=107.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe--CCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA--SADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~ 223 (795)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++... ...+. ..++.+ +...... ..++.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHHHHHH
Confidence 57899999999999999765 455689999999999999999988321 11121 122222 2222221 12222222
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhh---C
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKI---G 299 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~---~ 299 (795)
+....+ .....+-++++|++..-.......+...+......+++|+++... .+.... .
T Consensus 92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 211110 001235689999985544445666776666555567777766432 221111 1
Q ss_pred CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchH
Q 044700 300 STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 300 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
..+++.+++.++....+...+...+..- -.+....+++.++|.+--
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 1288999999999888887764332211 134677888889988754
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=2.7e-07 Score=93.03 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC--CCHHHHHHHHHHHhcCCcccCCC-C-CCChHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD--SDVLSVASSIAEALGASASAFSS-Q-GQELEPYLR 243 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~-~-~~~~~~~~~ 243 (795)
....++|+|++|+|||||++++|++.... +|+.++|+.+++. +++.++++.+...+-......+. . ..-......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 55789999999999999999999976544 8999999997776 79999999994333322211000 0 000112222
Q ss_pred HHHHh-cCCCeEEEEEeCC
Q 044700 244 YIRKS-IARNRFILVIDDV 261 (795)
Q Consensus 244 ~l~~~-l~~~~~LlVlDdv 261 (795)
..... -.+++.++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 2579999999998
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=5.3e-06 Score=93.73 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=110.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-------------------CceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-------------------FDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 206 (795)
.++||.+..+..|..++.... -...+.++|..|+||||+|+.+.+..--... |-..+.++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 589999999999999998763 3457899999999999999998873211000 10011221
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.+.. ...+++...+... ..+++-++|+|++...+....+.+...+..-...
T Consensus 95 aAs~-------------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 95 AASN-------------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred cccc-------------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 1111 1222222222211 1346678999999666655677777777654456
Q ss_pred cEEEEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 283 SKILVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 283 s~iivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
.++|++|.+. .+....... +.+++++.++....+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHHH
Confidence 6677666443 332222122 8889999999999888776433221 124567889999999885443
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=4.5e-07 Score=104.98 Aligned_cols=83 Identities=30% Similarity=0.444 Sum_probs=40.6
Q ss_pred eeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCccccee
Q 044700 553 LRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHL 631 (795)
Q Consensus 553 L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 631 (795)
++.|+|++|... ..+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|++|
T Consensus 420 v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 444555544221 344444555555555555555544 444445555555555555554444455555555555555
Q ss_pred ecCCcccc
Q 044700 632 LNVGTSLA 639 (795)
Q Consensus 632 ~l~~~~l~ 639 (795)
++++|.+.
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 55555443
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=9.1e-06 Score=89.98 Aligned_cols=198 Identities=21% Similarity=0.215 Sum_probs=114.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-------------------CceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-------------------FDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 206 (795)
+++||.+..+..|...+..+. -...+.++|++|+||||+|+.+++....... +.....++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 579999988888888877662 3356899999999999999999873211000 00112222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH-hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK-SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI 285 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 285 (795)
.+....+..+ ++|.+ .+.. -..+++-++|+|++..-...+.+.+...+........+
T Consensus 93 aa~~~gid~i-R~i~~---------------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 93 AASNRGIDEI-RKIRD---------------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred CcccCCHHHH-HHHHH---------------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 2211111111 11211 1111 12346679999999655555667777777654444555
Q ss_pred EEEcCC-hHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC-CchHHHHHhhhcC--
Q 044700 286 LVTTDD-QSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD-LPLLIKIVGRTLH-- 358 (795)
Q Consensus 286 ivTtR~-~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~lg~~L~-- 358 (795)
|++|.+ ..+....... +++.+++.++....+.+.+...+..- -.+....|++.++| .+.|+..+-.+..
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 544433 4444433333 88999999999888888764332211 13456678877765 4666666654332
Q ss_pred -CC-CHHHHHHHHh
Q 044700 359 -FK-TEKEWQSILD 370 (795)
Q Consensus 359 -~~-~~~~w~~~l~ 370 (795)
.. +.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 22 5555555553
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.4e-06 Score=92.93 Aligned_cols=196 Identities=15% Similarity=0.102 Sum_probs=113.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.++||-+..+..|..++.... -...+.++|+.|+||||+|+.+++...-..... ...+....+-..+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCCccce
Confidence 579999999999999988763 234689999999999999999988321110000 0011111111111111100000
Q ss_pred CCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChHHHHhhCCc--
Q 044700 226 ASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV-TTDDQSIADKIGST-- 301 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~~~~~~-- 301 (795)
.-.........+..++...+... ..++.-++|+|++..-+...++.+...+..-.....+|. ||....+.......
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 00000000111222233333221 245667999999987777788998888865445555554 44444444333332
Q ss_pred -ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchH
Q 044700 302 -ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 302 -~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
+.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+.-
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHHH
Confidence 8999999999988888776432211 1245678899999998853
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.41 E-value=3.3e-06 Score=97.90 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=97.7
Q ss_pred CceeecchhHH---HHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKE---DLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
++|+|.+..+. .+...+... ....+.++|++|+||||||+.+++ .....|. .++.+. ..+.+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~d------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVKD------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhHH-------
Confidence 47899888774 455666554 566788999999999999999998 3444441 111110 00110
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhc--CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE--cCChH--HHH
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSI--ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVT--TDDQS--IAD 296 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--va~ 296 (795)
..+........+ .+++.++||||++.-+..+++.+...+. .|+.++++ |.+.. +..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 111111221111 2467799999997666566666665443 35555553 44432 222
Q ss_pred hhC---CcccCCCCChHhHHHHHHHHhhcCC---CchhhhhHHHHHHHHHHHcCCCc
Q 044700 297 KIG---STENIRRASDEASWSLFESAAFFNR---SQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 297 ~~~---~~~~l~~L~~~~~~~Lf~~~a~~~~---~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
... ..+.+++|+.++...++.+.+-... ......-..+....|++.+.|..
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 221 1289999999999999987653100 00001112345677788887764
No 78
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6e-09 Score=102.24 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccch--hhccCcccceeecCCcccccCcccccccccCCC
Q 044700 577 NLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQ--GMGKLINLEHLLNVGTSLASMPKEIERLTRLSA 653 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l 653 (795)
.+.+|+.|+|.++.+. .+...+.+-.+|+.|+|+.|+.+++... -+.+++.|..|+++.|.+.. |. .+-+..
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-~~----Vtv~V~ 282 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-EK----VTVAVA 282 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-hh----hhHHHh
Confidence 3444444444444443 2333444445555555555544433221 24555566666665553321 00 000000
Q ss_pred cCCCCcceEEEeccCCC----CCCchhhhhcCccEEEEeCCCCCCC--CCCCCCCCccCeeecccccCceeeCccccCCC
Q 044700 654 QPPEYLMRLEIRDYRGS----TFPSWIDLLSRLTILSLKDWTNCEQ--LAPLGNLPSLESLSLFSMGSVRKVGNEFLGIK 727 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~----~lp~~i~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 727 (795)
.-.++|..|+++|+.-. .+......+++|..|||++|..... ...+.+++.|++|.++.|..+. ++.+..
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~-- 358 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLE-- 358 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeee--
Confidence 11123455666665421 1222234778888888888865442 2237788888888888876432 222222
Q ss_pred CCCCccCCCCCCcceeeecCCc
Q 044700 728 SGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 728 ~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
+...|.|.+|++.+|-
T Consensus 359 ------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 359 ------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ------eccCcceEEEEecccc
Confidence 3457788888888764
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8e-06 Score=92.59 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=111.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
+++||-+..+..|.+++.... -...+.++|..|+||||+|+.+++..--.... .+.-.-.+... ..-+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHcC
Confidence 579998888888999888763 34677999999999999999996521100000 00000000000 001111000
Q ss_pred hcCCcccCC-CCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHHHHh
Q 044700 224 LGASASAFS-SQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSIADK 297 (795)
Q Consensus 224 l~~~~~~~~-~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~va~~ 297 (795)
-.......+ .....++++...+... ..++.-++|||++...+...++.+...+..-....++|++| ....+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 000000000 0112223333332221 12445589999998877778888888887655566666555 43444332
Q ss_pred hCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 298 IGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 298 ~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
.... +++++++.++..+.+.+.+-..+... ..+....|++.++|.+--+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 2222 99999999999988887664322211 134567888899998754433
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=6.4e-06 Score=93.51 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=113.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.++||-+..+..|...+..+. -...+.++|..|+||||+|+.+++..--...+.. -.+... ..-+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHHcCCC
Confidence 589999999999999988762 3355789999999999999999873211100000 001110 11111110000
Q ss_pred CCcccCCC-CCCChHHHHHHHHH---h-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhhC
Q 044700 226 ASASAFSS-QGQELEPYLRYIRK---S-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l~~---~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~ 299 (795)
........ ....++++...+.. . ..+++-++|+|++...+....+.|...+..-....++|++|.+ ..+...+.
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 00000000 01122333322221 1 2456779999999877777888888888765556666655544 44433222
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.. +.+++++.++....+.+.+-..+. .........|++.++|.+-.+..+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 999999999999988876532221 112345678999999988644443
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1e-05 Score=89.16 Aligned_cols=179 Identities=21% Similarity=0.183 Sum_probs=113.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc------c------------hh-ccCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY------K------------VM-RYFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------~------------~~-~~F~~~~wv~ 206 (795)
.++||-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.. . +. ..+.-++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 589999998888888887762 34589999999999999999887611 0 00 1111233444
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKIL 286 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 286 (795)
.+....+.+ .+.|++..... -..++.-++|+|++...+.+..+.+...+..-...+++|
T Consensus 92 aas~~~vdd-IR~Iie~~~~~--------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 92 AASNTSVDD-IKVILENSCYL--------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred cccCCCHHH-HHHHHHHHHhc--------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 333323222 12222222111 013456689999997666667888888887666677777
Q ss_pred EEc-CChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 287 VTT-DDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 287 vTt-R~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
++| ....+....... +++.+++.++....+.+.+...+.. -..+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 655 334444433322 8999999999999988877433321 12345678899999887543
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1e-05 Score=90.56 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=110.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh-------------------ccCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM-------------------RYFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 206 (795)
+++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+++..--. +.|.-++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 589999999999999998763 34567899999999999999988732110 0111122333
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKIL 286 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 286 (795)
.+....++++ +++++.+... -..++.-++|+|++...+....+.+...+..-...+++|
T Consensus 95 aas~~~v~~i-R~l~~~~~~~--------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA--------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc--------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 2222222221 2222222111 113556689999997777778888888887665667776
Q ss_pred EEcCC-hHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 287 VTTDD-QSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 287 vTtR~-~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
++|.+ ..+....... +++++++.++....+.+.+-..+... ..+....|++.++|.+..+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHH
Confidence 65543 3343332222 88999999988777666553322111 1334667888899987544
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=9.4e-06 Score=87.70 Aligned_cols=189 Identities=12% Similarity=0.090 Sum_probs=109.6
Q ss_pred CceeecchhHHHHHHHHhCCCC--------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSST--------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 217 (795)
++++|-+..++.|.+.+..... -...+.++|+.|+||||+|+.+++. +-..... +-++....+ -
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~~~Cg~C~~----C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--EPGCGECRA----C 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--CCCCCCCHH----H
Confidence 5789999999999999987531 2456889999999999999998762 1111000 000100000 0
Q ss_pred HHHHHHhcCCcccC-----CCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE
Q 044700 218 SSIAEALGASASAF-----SSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVT 288 (795)
Q Consensus 218 ~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 288 (795)
+.+. .+..+.. .......+++...+... ..+++-++|+|++...+....+.+...+.....+..+|++
T Consensus 77 ~~~~---~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 77 RTVL---AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHh---cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 0000 0000000 00111222322222111 1245568888999777766777788777665566666666
Q ss_pred cCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 289 TDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 289 tR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
|.+. .+....... +.+++++.++..+.+.+.. +. ..+.+..++..++|.|.....+.
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~------~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV------DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 5554 444333322 8999999999988886432 11 13446788999999997665443
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.37 E-value=1.9e-05 Score=85.86 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=110.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch--h------------------ccCceeEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV--M------------------RYFDIRIWV 205 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~------------------~~F~~~~wv 205 (795)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+.+...- . .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 578999999999999997753 3457889999999999999888763210 0 12221 222
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 044700 206 GASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI 285 (795)
Q Consensus 206 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 285 (795)
+-+....+. -.+.+...+... -..+++-++|+|++........+.+...+......+.+
T Consensus 92 ~~~~~~~~~-~~~~l~~~~~~~--------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNVKYA--------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred eccccCCHH-HHHHHHHHHhcC--------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 221111111 112222222111 01245568899998555555677787777655566777
Q ss_pred EEEcCChH-HHHhhCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 286 LVTTDDQS-IADKIGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 286 ivTtR~~~-va~~~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
|++|.+.. +...... .+++.+++.++..+.+...+-..+... -.+.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHH
Confidence 77765543 3322222 288889999999888887764332211 1356778889999988655443
No 85
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=9e-06 Score=82.08 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=94.9
Q ss_pred Cceeecc-hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVD-EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
++|++.. .....+....... ....+.|+|..|+|||+|++++++ ........+.|+++.+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhHH---
Confidence 3555444 3344333333222 446799999999999999999988 3333434566776432 111111
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-hhhHHH-HHHhhcC-CCCCcEEEEEcCChH--------
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-NSTWES-LLQTLQE-GRPGSKILVTTDDQS-------- 293 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~-------- 293 (795)
..+. .+ .+.-+||+||+.... ...|.. +...+.. ...|..||+|++...
T Consensus 86 ------------------~~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 ------------------DALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ------------------HHHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 1111 11 123489999984321 123432 2222221 134667999997432
Q ss_pred -HHHhhCC--cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 294 -IADKIGS--TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 294 -va~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
+...+.. .+++++++.++-.+++.+++...+-. --++...-|++.+.|-.-++
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 2222212 28999999999999999877543221 12455677888887765444
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1e-05 Score=90.61 Aligned_cols=197 Identities=19% Similarity=0.171 Sum_probs=110.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|.+..++.+.+++..+. ....+.++|+.|+||||+|+.+++.. .. .-|.... .+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L--~C----~~~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAI--NC----LNPKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh--cC----CCCCCCC-CCcccHHHHHHHcCCC
Confidence 579999999999999987753 34678899999999999999998732 10 0111100 0000011111111000
Q ss_pred CCcccCCC-CCCChHHHHHHH---HHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC-ChHHHHhhC
Q 044700 226 ASASAFSS-QGQELEPYLRYI---RKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTD-DQSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l---~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~va~~~~ 299 (795)
........ .....+++...+ ... ..+++-++|+|++...+...++.+...+........+|++|. ...+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00000000 011222222221 111 123444799999976666778888888776555666665553 333432222
Q ss_pred C---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHHh
Q 044700 300 S---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIVG 354 (795)
Q Consensus 300 ~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~lg 354 (795)
. .+++.+++.++....+...+-..+... -.+.+..+++.++|.+- |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 299999999999988887663322111 13457788899999764 443333
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.36 E-value=1.2e-05 Score=78.45 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCc
Q 044700 251 RNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQ 326 (795)
Q Consensus 251 ~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~ 326 (795)
+.+-++|+|++.......++.+...+......+.+|++|++. .+....... +++.+++.++..+.+.+. +-
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---gi-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---GI-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---CC--
Confidence 566789999996666667888888887666667777776654 232222222 999999999998888775 11
Q ss_pred hhhhhHHHHHHHHHHHcCCCchH
Q 044700 327 EVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
.++.+..|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=2.2e-05 Score=88.45 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=107.5
Q ss_pred CceeecchhHHHHHHHHhCCC--CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS--TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++++|.++.++++.+|+..-. ...+.+.|+|++|+||||+|+.++++. . |+ .+-++.+...+. +....++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHHHH
Confidence 579999999999999987532 137899999999999999999999843 1 22 233444433222 233333333
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh----hhHHHHHHhhcCCCCCcEEEEEcCCh-HHHH-h
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN----STWESLLQTLQEGRPGSKILVTTDDQ-SIAD-K 297 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~-~va~-~ 297 (795)
...... ....++-+||+|++..... ..+..+...+.. .+..||+|+.+. .... .
T Consensus 88 ~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 88 AATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred hhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 221110 0113677999999854321 335556655553 233455555332 2211 1
Q ss_pred hC---CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 298 IG---STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 298 ~~---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
.. ..+++.+++.++....+.+.+...+.... .+....|++.++|-.-.+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 21 22889999999999888877644332211 3567788889988765443
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=7.1e-07 Score=103.36 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=90.6
Q ss_pred cceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcc-ccCcccCC
Q 044700 522 NLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA-ELPEELCG 600 (795)
Q Consensus 522 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~ 600 (795)
.++.|++.+|. +...+|..+.. +++|+.|+|++|... ..+|..++++++|++|+|++|.+. .+|..+++
T Consensus 419 ~v~~L~L~~n~-----L~g~ip~~i~~-L~~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQG-----LRGFIPNDISK-LRHLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCC-----ccccCCHHHhC-CCCCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 47788888886 45567777888 999999999999543 688989999999999999999998 78999999
Q ss_pred CCcCcEEeccCCCCCCccchhhccC-cccceeecCCcc
Q 044700 601 LWNLQTLELNWCTNLETLPQGMGKL-INLEHLLNVGTS 637 (795)
Q Consensus 601 L~~L~~L~L~~~~~~~~lp~~i~~l-~~L~~L~l~~~~ 637 (795)
|++|++|+|++|...+.+|..+..+ .++..+++.+|.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999998888999988764 467788888774
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4e-07 Score=70.56 Aligned_cols=56 Identities=34% Similarity=0.445 Sum_probs=26.1
Q ss_pred eeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCC
Q 044700 552 TLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWC 612 (795)
Q Consensus 552 ~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 612 (795)
+|++|++++| .+ ..+| ..|.++++|++|++++|.++.+|. .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KL----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TE----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CC----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555554 33 3333 234445555555555555544432 4444555555555444
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.9e-05 Score=84.19 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=116.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
..++|-++..+.+...+..+. ....+.|+|..|+||||+|..+++. +-.. +... ........-...+.|.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 679999999999999998763 3457999999999999999988873 2111 1111 0000111111222222
Q ss_pred HH-------hcCCcccC---CCCCCChHHHHHHHHHhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE-
Q 044700 222 EA-------LGASASAF---SSQGQELEPYLRYIRKSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI- 285 (795)
Q Consensus 222 ~~-------l~~~~~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i- 285 (795)
.. +..+.... ......++++. .+.+.+ .+++-++|+|++...+....+.+...+..-.....+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 11 10000000 00122244443 233333 356679999999887777888888888654444554
Q ss_pred EEEcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 286 LVTTDDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 286 ivTtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
++|++...+.....+. +.+.+++.++..+++.+..... . -..+.+..+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4554444443333222 9999999999999998743111 1 113446788999999998665444
No 92
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.4e-05 Score=83.65 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=114.6
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-e-eEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-I-RIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i~ 221 (795)
+.+.+|+++++++...|... .....-+.|+|..|.|||+.++.|.+ ++..... . +++|++-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 46889999999999887542 11334499999999999999999999 4444432 2 79999999999999999999
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCChhhHHHHHHhhcCCCC-CcEEE--EEcCChHHHH
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIEDNSTWESLLQTLQEGRP-GSKIL--VTTDDQSIAD 296 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~ii--vTtR~~~va~ 296 (795)
.+++.... ......+....+.+.+. ++.+++|||++..-....-+.+...+..... .++|+ ..+-+.....
T Consensus 95 ~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 95 NKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 99983322 45566677777777765 4789999999843211111333343433322 45443 3333333333
Q ss_pred hhCC--------c-ccCCCCChHhHHHHHHHHhh
Q 044700 297 KIGS--------T-ENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 297 ~~~~--------~-~~l~~L~~~~~~~Lf~~~a~ 321 (795)
.+.. . +..++-+.+|-.+++..++-
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 3322 1 56778888888888888773
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=2.3e-05 Score=83.95 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=114.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeE------EEEeCCCCCHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRI------WVGASADSDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~~~~ 219 (795)
.+++|-+..+..+.+.+..+. -...+.++|+.|+||+|+|..+++..--........ =..+.... ..-+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHHH
Confidence 579999999999999998873 355799999999999999988776221000000000 00000000 01111
Q ss_pred HHHHhcCCccc---CC----C------CCCChHHHHHHHHHhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCC
Q 044700 220 IAEALGASASA---FS----S------QGQELEPYLRYIRKSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRP 281 (795)
Q Consensus 220 i~~~l~~~~~~---~~----~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 281 (795)
|.. ...+. .. . ....++++.. +.+.+ .+++.++|+|++...+....+.+...+..-..
T Consensus 95 i~~---~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 95 IAA---GAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHc---cCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 110 00000 00 0 1123344333 22332 25667999999988887888888888876555
Q ss_pred CcEEEEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 282 GSKILVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 282 gs~iivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
++.+|++|.+. .+....... +.+.+++.++..+++..... . . . ......+++.++|.|+.+..+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~-~--~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D-L--P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-C--C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 66677766655 343333322 99999999999999977531 1 0 1 1122678999999998665554
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=87.63 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=111.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEE-----EeCCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWV-----GASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~vs~~~~~~~~~~~i 220 (795)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-...++...|. .+.... .-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~----~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE----SCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH----HHHHH
Confidence 579999999999999888762 33458899999999999999988732111111111111 111110 00111
Q ss_pred HHHhcCCcccCCC-CCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHH
Q 044700 221 AEALGASASAFSS-QGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSI 294 (795)
Q Consensus 221 ~~~l~~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 294 (795)
............. .....+++.+..... ..+++-++|+|++.....+.++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1000000000000 111233333322222 13456688999997666678888888887666677766555 44444
Q ss_pred HHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 295 ADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 295 a~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
....... +++.+++.++....+...+-..+. .-..+.+..|++.++|.+--+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 4332222 899999999988888776532211 112456788999999987533
No 95
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=3e-06 Score=90.02 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCC-CccccCcccCCCCcCcEEeccCCCCCCccch
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLL-KIAELPEELCGLWNLQTLELNWCTNLETLPQ 620 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 620 (795)
+++++.|++++| .+ ..+|. -..+|+.|.+++| .++.+|..+. .+|+.|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c-~L----~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-DI----ESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCC-CC----cccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 566666666666 44 44441 1124666666653 3445554332 4566666666655555554
No 96
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=1.3e-06 Score=91.69 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=65.5
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCcccCCCCC
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS--DVLSVASSIAEALGASASAFSSQG 235 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 235 (795)
+++.+.--. ..+-.+|+|++|+||||||++||++.... +|+.++||.+++.. .+.++++.|...+-.+.. +.
T Consensus 159 vID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~----d~ 232 (416)
T PRK09376 159 IIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF----DE 232 (416)
T ss_pred eeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC----CC
Confidence 444443322 55778999999999999999999965444 89999999999887 778888888643222221 11
Q ss_pred CChH------HHHHHHHHh-cCCCeEEEEEeCC
Q 044700 236 QELE------PYLRYIRKS-IARNRFILVIDDV 261 (795)
Q Consensus 236 ~~~~------~~~~~l~~~-l~~~~~LlVlDdv 261 (795)
.... ......+.. -.+++++|++|++
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 1111 111222222 3679999999999
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=3.9e-08 Score=101.20 Aligned_cols=256 Identities=21% Similarity=0.167 Sum_probs=141.0
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCC-cc--c
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLK-IA--E 593 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-l~--~ 593 (795)
...++++..|.+.++.. +.+..-..+.+.++.|+.|+|..|..+++ ..+-.....+++|.||++++|. |+ .
T Consensus 160 ~~~CpnIehL~l~gc~~----iTd~s~~sla~~C~~l~~l~L~~c~~iT~--~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKK----ITDSSLLSLARYCRKLRHLNLHSCSSITD--VSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhhCCchhhhhhhccee----ccHHHHHHHHHhcchhhhhhhcccchhHH--HHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34677777777766542 33333333444477788888887755533 1122233457778888887774 22 1
Q ss_pred cCcccCCCCcCcEEeccCCCCCC--------------------------ccc--hhhccCcccceeecCCcccccCccc-
Q 044700 594 LPEELCGLWNLQTLELNWCTNLE--------------------------TLP--QGMGKLINLEHLLNVGTSLASMPKE- 644 (795)
Q Consensus 594 lp~~i~~L~~L~~L~L~~~~~~~--------------------------~lp--~~i~~l~~L~~L~l~~~~l~~lp~~- 644 (795)
+-.-..+..+|+.+.+++|.... ... ..-..+..|+.|..+++.- ++..
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~ 311 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD--ITDEV 311 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC--CchHH
Confidence 22223345555666555553221 110 0001233444444444321 1110
Q ss_pred ccccccCCCcCCCCcceEEEeccCC-CCC--CchhhhhcCccEEEEeCCCCCCC--CCC-CCCCCccCeeecccccCcee
Q 044700 645 IERLTRLSAQPPEYLMRLEIRDYRG-STF--PSWIDLLSRLTILSLKDWTNCEQ--LAP-LGNLPSLESLSLFSMGSVRK 718 (795)
Q Consensus 645 i~~L~~L~l~~~~~L~~L~l~~~~~-~~l--p~~i~~l~~L~~L~L~~~~~~~~--l~~-l~~l~~L~~L~L~~~~~l~~ 718 (795)
+.. | -....+|+.|.+.++.. +.. ...-.+.+.|+.+++..|....+ +.. -.++|.|+.|.+++|..+++
T Consensus 312 l~a---L-g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 312 LWA---L-GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred HHH---H-hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 000 0 01224556777766652 111 11112667788888887765432 333 34788999999998888776
Q ss_pred eCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC-----CCCCcceecc
Q 044700 719 VGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP-----GIFLSQVIKP 790 (795)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP-----~~L~~L~i~~ 790 (795)
.|....... ......|+.|.|.+++.+.+-..+....+++|+.+++.+|...+.=| ..++++++..
T Consensus 388 ~gi~~l~~~------~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 388 EGIRHLSSS------SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhc------cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 644433321 23577889999999988877666655668899999999987666522 3455555443
No 98
>PRK09087 hypothetical protein; Validated
Probab=98.26 E-value=4.9e-05 Score=76.10 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=91.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+.+.|+|..|+|||+|++.+++... ..|++.. .+...++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~------------------------- 84 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN------------------------- 84 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-------------------------
Confidence 456799999999999999999887421 2244321 11111111
Q ss_pred hcCCCeEEEEEeCCCCC--ChhhHHHHHHhhcCCCCCcEEEEEcCCh---------HHHHhhCCc--ccCCCCChHhHHH
Q 044700 248 SIARNRFILVIDDVWIE--DNSTWESLLQTLQEGRPGSKILVTTDDQ---------SIADKIGST--ENIRRASDEASWS 314 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iivTtR~~---------~va~~~~~~--~~l~~L~~~~~~~ 314 (795)
.+.+ -+|++||+... +.+.+-.+...+. ..|..||+|++.. ++...+... +++++++.++-.+
T Consensus 85 ~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 85 AAAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred hhhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 1111 27888998432 2233333333333 3466789888742 233333322 9999999999999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc------CCC--CHHHHHHHHh
Q 044700 315 LFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL------HFK--TEKEWQSILD 370 (795)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L------~~~--~~~~w~~~l~ 370 (795)
++.+.+-..+- . --+++..-|++.+.|..-++..+-..| ..+ +....+.+++
T Consensus 161 iL~~~~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 161 VIFKLFADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHHHHHHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99988743221 1 124567778888888776655322222 122 5666666654
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.7e-05 Score=87.81 Aligned_cols=175 Identities=20% Similarity=0.178 Sum_probs=108.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc-------------------cCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR-------------------YFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 206 (795)
++++|-+..++.+.+++.... -...+.++|..|+||||+|+.+++..--.. .|.-.++++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 579999999999999998763 345678999999999999999976321100 111112222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.+.. ...+++...+... ..+++-++|+|++........+.+...+..-...
T Consensus 95 ~~~~-------------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 95 AASN-------------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred cccc-------------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1111 1222222222111 1356679999999776666788888888765556
Q ss_pred cEEEEEcCC-hHHHHhhCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 283 SKILVTTDD-QSIADKIGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 283 s~iivTtR~-~~va~~~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
+.+|++|.+ ..+...... .+++++++.++..+.+.+.+-..+. .........|++.++|.+--+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 666655543 333322221 1899999999998888776532221 112345678888999987533
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=2.7e-07 Score=93.15 Aligned_cols=224 Identities=21% Similarity=0.172 Sum_probs=144.7
Q ss_pred hHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCc----cccCc-------ccCCCCcCcEEeccCC
Q 044700 544 KLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKI----AELPE-------ELCGLWNLQTLELNWC 612 (795)
Q Consensus 544 ~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l----~~lp~-------~i~~L~~L~~L~L~~~ 612 (795)
..... +..+..|+|+||..-..-...+.+.+.+.++|+.-+++.-.. .++|+ .+-..++|++||||.|
T Consensus 24 ~~~~~-~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEP-MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcc-cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 33445 789999999999432110112334566778999999886432 14444 3446779999999999
Q ss_pred CCCCccch----hhccCcccceeecCCcccccCc-----ccccccccC-CCcCCCCcceEEEeccCCCCCCc-----hhh
Q 044700 613 TNLETLPQ----GMGKLINLEHLLNVGTSLASMP-----KEIERLTRL-SAQPPEYLMRLEIRDYRGSTFPS-----WID 677 (795)
Q Consensus 613 ~~~~~lp~----~i~~l~~L~~L~l~~~~l~~lp-----~~i~~L~~L-~l~~~~~L~~L~l~~~~~~~lp~-----~i~ 677 (795)
-.-..-+. -+.++..|++|+|.+|.+.... ..+..|... ....++.|+.+...+|+....+. .+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 65444433 3577899999999999875322 111222211 23345678999999888665443 344
Q ss_pred hhcCccEEEEeCCCCCC-CC----CCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccc
Q 044700 678 LLSRLTILSLKDWTNCE-QL----APLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWG 752 (795)
Q Consensus 678 ~l~~L~~L~L~~~~~~~-~l----~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 752 (795)
..+.|+.+.++.|.+.. .. ..+..+|+|+.|+|..|.- +.-+.. .+...+..++.|+.|.+.+| .++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~------~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSV------ALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHH------HHHHHhcccchheeeccccc-ccc
Confidence 67899999999998753 22 1278999999999987431 111111 11234557889999999998 443
Q ss_pred ccccc-----ccccccccceeeecCCCCCc
Q 044700 753 DWECE-----MANVMPCLCSLSFVYCPELK 777 (795)
Q Consensus 753 ~~~~~-----~~~~~p~L~~L~l~~C~~L~ 777 (795)
.-... .....|+|+.|.+.+| .++
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt 283 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGN-EIT 283 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcc-hhH
Confidence 31111 1223899999999999 444
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.3e-05 Score=86.39 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=112.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-....+ +-.+.... .-+.|...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~----~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCE----SCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccH----HHHHhhcccC
Confidence 589999999999999998762 344578999999999999999987321000000 00111100 0001100000
Q ss_pred CCccc--CCC-CCCChHHH---HHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHHHHh
Q 044700 226 ASASA--FSS-QGQELEPY---LRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSIADK 297 (795)
Q Consensus 226 ~~~~~--~~~-~~~~~~~~---~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~va~~ 297 (795)
..... .+. ....++++ .+.+... ..+++-++|+|++........+.|...+..-.....+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00000 000 01112222 2222211 13456689999997777778888888887766666666555 44444433
Q ss_pred hCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHHh
Q 044700 298 IGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIVG 354 (795)
Q Consensus 298 ~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~lg 354 (795)
... .+++..++.++..+.+.+.+-..+... ..+....|++.++|.+- |+..+-
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 299999999998888877654322111 13456778888999774 444443
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.7e-05 Score=87.43 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=113.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc--eeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD--IRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++...-..... ...+-.+.... --+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~----~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE----HCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH----HHHHHhcC
Confidence 579999999999999998763 345788999999999999999987321111110 00000011100 00111110
Q ss_pred hcCCcccCC-CCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHHHHh
Q 044700 224 LGASASAFS-SQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSIADK 297 (795)
Q Consensus 224 l~~~~~~~~-~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~va~~ 297 (795)
-........ ......+++...+... ..+++-++|+|++...+....+.|...+..-...+.+|++| ....+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 000000000 0112233333222211 13455689999997666667888888887665667776554 44444333
Q ss_pred hCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 298 IGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 298 ~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
+... +++..++.++....+.+.+-..+... -.+....|++.++|.+.-+..
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3222 89999999999998888764322211 135677889999998865443
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4e-05 Score=86.33 Aligned_cols=199 Identities=15% Similarity=0.180 Sum_probs=113.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|-+..+..|...+.... -...+.++|+.|+||||+|+.+++..--....+.. .+... ..-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHhcCCC
Confidence 578999888888888887652 35678899999999999999998733111000000 00000 00111100000
Q ss_pred CCcccCC-CCCCChHHHHHHHHHh-----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhh
Q 044700 226 ASASAFS-SQGQELEPYLRYIRKS-----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKI 298 (795)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~ 298 (795)
....... .....++++.. +.+. ..+++-+||+|++...+...++.|...+..-.....+|++|.+ ..+...+
T Consensus 88 pDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000000 00111222221 2111 2356679999999776667788888887654445566665544 4444332
Q ss_pred CC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc-hHHHHHhhhc
Q 044700 299 GS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP-LLIKIVGRTL 357 (795)
Q Consensus 299 ~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~lg~~L 357 (795)
.. .+++++++.++....+...+...+.. -..+.++.|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 28999999999998888766433221 12356778888899865 5666665433
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.1e-05 Score=83.40 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=104.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch------hccCce-eEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV------MRYFDI-RIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~-~~wv~vs~~~~~~~~~~ 218 (795)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...- ...|.. ++-++.....++ +-.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 578999999999999998753 3468899999999999999999773211 011211 111111111111 1111
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHHHHh
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSIADK 297 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~va~~ 297 (795)
.+++++... -..+++-++|+|++.......++.+...+........+|++| ....+...
T Consensus 95 ~l~~~~~~~--------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 95 NLIDQVRIP--------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHhhc--------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 222221110 012345589999986555556777777665544455555554 33333222
Q ss_pred hC---CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 298 IG---STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 298 ~~---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
.. ..++..+++.++....+...+...+..- ..+.+..+++.++|.+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHH
Confidence 22 1288999999999888887764433211 13567778888888664
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.8e-06 Score=66.84 Aligned_cols=59 Identities=34% Similarity=0.425 Sum_probs=49.3
Q ss_pred CCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCccc
Q 044700 579 EFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSL 638 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l 638 (795)
++|++|++++|+++.+|. .+.++++|++|++++|. +..+| ..|..+++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999885 77889999999999884 45554 5689999999999999864
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.1e-05 Score=90.12 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-....... .+....+ -+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHHcCCC
Confidence 579999999999999998763 34568899999999999999998732110110000 0000000 000000000
Q ss_pred CCc--ccCCC-CCCChHHHHHHHHH----hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC-ChHHHHh
Q 044700 226 ASA--SAFSS-QGQELEPYLRYIRK----SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTD-DQSIADK 297 (795)
Q Consensus 226 ~~~--~~~~~-~~~~~~~~~~~l~~----~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~va~~ 297 (795)
... ..+.. ....++++.....+ -..++.-++|||++...+...++.|...+..-...+.+|++|. ...+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000 00000 11122333222111 1235566889999987777888899998887666767665554 3344433
Q ss_pred hCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchH
Q 044700 298 IGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 298 ~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
+... |++..++.++..+.+.+..-..+.. -..+....|++.++|.+..
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 3322 8999999999888887654222211 1134456788899998843
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=3.6e-05 Score=77.71 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=93.5
Q ss_pred cee-ecchhH-HHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 147 ETC-GVDEEK-EDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 147 ~~v-Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
+|+ |..... ..+.++... ......+.|+|..|+|||+||+.+++... ... ....+++...... . +
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~ 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H
Confidence 444 554444 344444332 22557889999999999999999998321 111 2344554332110 0 0
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCc-EEEEEcCChHHHH------
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-RPGS-KILVTTDDQSIAD------ 296 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~va~------ 296 (795)
... ...-++|+||+...+...-..+...+... ..|. .+|+|++......
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 011 12337889999543323333444444321 2344 4677776543221
Q ss_pred --hhC--CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 044700 297 --KIG--STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL 357 (795)
Q Consensus 297 --~~~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L 357 (795)
.+. ..+++++++.++-..++.+.+-..+- .--++....+++.+.|.+..+..+-..+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222 22889999998777776654422111 1124567777788888888776665443
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=3.1e-05 Score=78.29 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=93.9
Q ss_pred ceeecch-hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 147 ETCGVDE-EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 147 ~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
-++|... .+..+.++.... ....+.|+|+.|+|||+|++.+++ .....-..+.|+++.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh-------------
Confidence 3446333 344444443333 456899999999999999999998 3333333456766542100
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-hhhHHHH-HHhhcCC-CCC-cEEEEEcCChH--------
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-NSTWESL-LQTLQEG-RPG-SKILVTTDDQS-------- 293 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-~~~~~~l-~~~l~~~-~~g-s~iivTtR~~~-------- 293 (795)
...+..+.+.+ --++++||+.... ..+|+.. ...+... ..| .++|+||+...
T Consensus 87 -----------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 -----------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -----------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 00011111111 1378999994422 1345432 2222211 133 37899987552
Q ss_pred -HHHhhCCc--ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 294 -IADKIGST--ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 294 -va~~~~~~--~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
+...+... +++++++.++-.+++.+++...+- .--+++..-|++.+.|..-++.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF----ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHH
Confidence 22333222 899999999999999886643221 1124567777888877654443
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=5.8e-05 Score=86.39 Aligned_cols=188 Identities=19% Similarity=0.167 Sum_probs=108.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--....+ .+-.+... ... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C-------~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQEC-------IEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHH-------HHh---hc
Confidence 579999999999999998763 456678999999999999999986211000000 00000000 000 00
Q ss_pred CCccc--CCC-CCCChH---HHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChHHHHh
Q 044700 226 ASASA--FSS-QGQELE---PYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKIL-VTTDDQSIADK 297 (795)
Q Consensus 226 ~~~~~--~~~-~~~~~~---~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~va~~ 297 (795)
..... ... .....+ ++...+... ..+++-++|+|++.......+..+...+..-.....+| +||+...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 000 001122 222222211 13566699999997666678888888876654555555 45444444433
Q ss_pred hCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 298 IGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 298 ~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
... .+++.+++.++....+...+-..+.. -..+.++.|++.++|.+--+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 222 29999999999988887765332211 11345778899999977533
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=7.1e-05 Score=86.01 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=112.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+++||-+..++.|..++.... -...+.++|..|+||||+|+.+++. +...... .-...++.-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~----~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTTND----PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC----CCCCCCccCHHHHHHhcCCC
Confidence 589999999999998888762 3456789999999999999999873 2111100 00001111122222221111
Q ss_pred CCcccCCC-CCCChHHHHHHH---HHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhhC
Q 044700 226 ASASAFSS-QGQELEPYLRYI---RKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l---~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~ 299 (795)
........ .....+++...+ ... ..+++-++|+|++...+.+..+.|...+......+.+|++|.+ ..+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 00000000 112223322222 111 1245678999999666666778888877765556666665543 33333222
Q ss_pred C---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 300 S---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 300 ~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
. .+++..++.++....+...+...+.. -..+.+..|++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 28888999999888887776433221 1135677899999998864443
No 111
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.9e-05 Score=85.41 Aligned_cols=198 Identities=15% Similarity=0.156 Sum_probs=110.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE-eCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG-ASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 224 (795)
.++||-+..+..|.+.+..+. -...+.++|+.|+||||+|+.+++...-...++...|.. +...+..=..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 589999999999999887752 345588999999999999998887321111111001110 000000000011110000
Q ss_pred cCCcccCCC-CCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChHHHHhh
Q 044700 225 GASASAFSS-QGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV-TTDDQSIADKI 298 (795)
Q Consensus 225 ~~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~~~ 298 (795)
...-...+. .....+++...+... ..+++-++|+|++...+....+.|...+..-...+.+|+ |++...+....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000000000 112234444333222 234556889999977666678888888876555566554 44444444333
Q ss_pred CCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 299 GST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 299 ~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
... +++.+++.++....+.+.+-..+.. -..+.+..|++.++|..-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHH
Confidence 222 9999999999888777665322211 124567788999999664
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.12 E-value=7.9e-05 Score=79.45 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=86.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
++++|.+...+.+.+++..+. ...++.++|.+|+||||+|+.+++. .... ...++.+. ... +..+..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHHHHHH
Confidence 578999999999999998653 4567778999999999999999883 2222 23444443 222 12222111111
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCChHH-HHhhCC---
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQEGRPGSKILVTTDDQSI-ADKIGS--- 300 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~~~--- 300 (795)
... .+.+.+-++|+||+... ..+....+...+.....++++|+||....- ......
T Consensus 93 ~~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 93 STV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred Hhh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 000 01134568899999544 223334455545555567888888865431 111111
Q ss_pred cccCCCCChHhHHHHHHH
Q 044700 301 TENIRRASDEASWSLFES 318 (795)
Q Consensus 301 ~~~l~~L~~~~~~~Lf~~ 318 (795)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 166666677776666543
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.10 E-value=0.00017 Score=74.29 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=104.0
Q ss_pred CceeecchhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
+.+.+|+.++..+..++...+. -...|.|+|.+|.|||.+.+++.+... . ..+|+++-+.++.+.++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHHHh
Confidence 6788999999999999988765 456669999999999999999998542 1 358999999999999999999999
Q ss_pred cC-CcccCCCCC--CChHHHHHHHHH--hcC--CCeEEEEEeCCCCC---ChhhHHHHHHhhcCCCCCcEEEEEcCChHH
Q 044700 225 GA-SASAFSSQG--QELEPYLRYIRK--SIA--RNRFILVIDDVWIE---DNSTWESLLQTLQEGRPGSKILVTTDDQSI 294 (795)
Q Consensus 225 ~~-~~~~~~~~~--~~~~~~~~~l~~--~l~--~~~~LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (795)
.. ......... ....+....+.+ ... ++.++||||++..- +..-+..+...-.-.....-+|+++-...-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 62 221100001 112222333333 222 46899999998321 111111111111111122333444332222
Q ss_pred HH---hhCCc----ccCCCCChHhHHHHHHHH
Q 044700 295 AD---KIGST----ENIRRASDEASWSLFESA 319 (795)
Q Consensus 295 a~---~~~~~----~~l~~L~~~~~~~Lf~~~ 319 (795)
.. .++.. +..+.-+.+|...++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 12322 677888999999988664
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=8.6e-05 Score=74.03 Aligned_cols=177 Identities=14% Similarity=0.204 Sum_probs=96.9
Q ss_pred eeec-chhHHHHHHHHhCC-CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 148 TCGV-DEEKEDLVSKLLSS-STEIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 148 ~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++|- .+..-.....+... ......+.|+|..|+|||.|.+++++ +..+.. ..++|+ +..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHH
Confidence 3464 23333444444443 32456789999999999999999999 444333 245666 355666666666
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh-hhHHH-HHHhhcCC-CCCcEEEEEcCChH-------
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN-STWES-LLQTLQEG-RPGSKILVTTDDQS------- 293 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~gs~iivTtR~~~------- 293 (795)
+.... . ..++..+. .-=++++||+..-.. ..|.+ +...+... ..|.+||+|++...
T Consensus 83 ~~~~~---------~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 83 LRDGE---------I----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHTTS---------H----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHccc---------c----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 65422 1 22333334 334889999954322 23333 22222211 35668999995432
Q ss_pred --HHHhhCCc--ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 294 --IADKIGST--ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 294 --va~~~~~~--~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
+...+... +++++++.++-..++.+++...+-. --++++.-|++.+.+..-.+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHH
Confidence 22222222 8999999999999999988543322 12455666777766655444
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00014 Score=81.21 Aligned_cols=181 Identities=16% Similarity=0.149 Sum_probs=107.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch--h-----------------ccCceeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV--M-----------------RYFDIRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~~~~wv~ 206 (795)
.+++|-+..+..+.+++.... -...+.++|+.|+||||+|+.++....- . ..|...++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 578999999999999998763 3456778999999999999998763210 0 0011111221
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKI 285 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 285 (795)
.+....+ .+.+.+.+.+... ..+++-++|+|++........+.+...+........+
T Consensus 95 aas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 95 AASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred CccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1111111 1111222222111 1356679999999666656777787777665455555
Q ss_pred EEEc-CChHHHHhhC---CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 286 LVTT-DDQSIADKIG---STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 286 ivTt-R~~~va~~~~---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
|++| +...+..... ..+++.+++.++....+.+.+-..+.. -..+.+..|++.++|.+..+..+
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 4333332222 228899999999888888766332211 11345677888888877544433
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=84.22 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=111.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcc---------------------hhccCceeEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYK---------------------VMRYFDIRIW 204 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~w 204 (795)
++++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+... ...+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 579999999999999998763 345688999999999999988776321 011232 122
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcE
Q 044700 205 VGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSK 284 (795)
Q Consensus 205 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 284 (795)
++.+....+.++ +.+++++.... ..+++-++|+|++...+...++.|...+..-..++.
T Consensus 95 ld~~~~~~vd~I-r~li~~~~~~P--------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 95 LDAASNNSVDDI-RNLIEQVRIPP--------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred ecccccCCHHHH-HHHHHHHhhCc--------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 222222112111 12222221111 123555889999977776788888888876656667
Q ss_pred EEE-EcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 285 ILV-TTDDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 285 iiv-TtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
+|+ ||+...+....... +++.+++.++....+.+.+-..+-. -..+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 665 44545554433322 8999999999998888766432211 11345778889999876533
No 117
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.08 E-value=1.5e-05 Score=80.90 Aligned_cols=173 Identities=22% Similarity=0.194 Sum_probs=105.0
Q ss_pred ceeecchhHH---HHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 147 ETCGVDEEKE---DLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 147 ~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++||.+..+. -|.+++.++ ...-+.+||++|+||||||+.+.+..+-.. ..||..|....-..-.++|.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 4666554332 344445554 778888999999999999999998554333 4577777654433344444443
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChHH---HHhh
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV--TTDDQSI---ADKI 298 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---a~~~ 298 (795)
... ...+.++|.+|++|.|..-+..+-+.+ +|.-.+|+-++| ||.++.. +...
T Consensus 213 aq~-------------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 213 AQN-------------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHH-------------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHH
Confidence 321 123467899999999965444343333 455567887776 6666543 1111
Q ss_pred C--CcccCCCCChHhHHHHHHHHhh--cC-CC---chhh---hhHHHHHHHHHHHcCCCc
Q 044700 299 G--STENIRRASDEASWSLFESAAF--FN-RS---QEVR---EHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 299 ~--~~~~l~~L~~~~~~~Lf~~~a~--~~-~~---~~~~---~~~~~~~~~i~~~c~G~P 347 (795)
. ..+-++.|+.++-..++.+..- +. .. +-+. .-...+.+-++..|.|-.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 1288999999999998887432 11 10 1111 123456666777777754
No 118
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=1.7e-07 Score=102.53 Aligned_cols=124 Identities=27% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCc
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYL 659 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L 659 (795)
.|.+-+.++|.+..+-.++.-++.|+.|||++|+ ....- .+..|++|+||+|+.|.+..+|.- ....+ .|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l-------~~~gc-~L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQL-------SMVGC-KL 234 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhcccccc-------chhhh-hh
Confidence 4555666666666666666666667777777663 33332 466666677777776666655521 00000 13
Q ss_pred ceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCC--CCCCCCCCCccCeeeccccc
Q 044700 660 MRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCE--QLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~ 714 (795)
..|.++||...++ ..+.++.+|+.||+++|-+.+ .+..++.|..|+.|.|.+|+
T Consensus 235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5566666655433 235566667777777665543 34445666666666666654
No 119
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.06 E-value=1.1e-05 Score=87.66 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=97.4
Q ss_pred CceeecchhHHHHHHHHhCCC-----------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS-----------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|+++.+++|.+.+...- ...+-+.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----H
Confidence 579999999999998874321 13456999999999999999999983 33333 22221 1
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNS---TWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~-- 278 (795)
.+. ....+. ....+...+...-...+.+|++|+++.- +.. .+..+...+..
T Consensus 191 ~l~----~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 191 ELV----RKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHH----HHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 111000 0111112222222346789999998432 111 22233332322
Q ss_pred CCCCcEEEEEcCChHHHH-hh------CCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 279 GRPGSKILVTTDDQSIAD-KI------GSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~-~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
...+.+||.||...+... .. ...++++..+.++..++|...+...... .... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 134677888887553221 11 1128899999999999998877433211 1112 346667776654
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.3e-05 Score=84.85 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC--CCHHHHHHHHHHHhcCCcccCCCCC--CChHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD--SDVLSVASSIAEALGASASAFSSQG--QELEPYLR 243 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~~~~ 243 (795)
....++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.|...+-......+... .-......
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 5678999999999999999999996433 37999999999866 7899999999655444432110000 00011222
Q ss_pred HHHHh-cCCCeEEEEEeCCC
Q 044700 244 YIRKS-IARNRFILVIDDVW 262 (795)
Q Consensus 244 ~l~~~-l~~~~~LlVlDdvw 262 (795)
..+.. -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 36899999999993
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=8.7e-05 Score=82.19 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=105.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh---------------------ccCceeEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM---------------------RYFDIRIW 204 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~w 204 (795)
.+++|.+..+..+.+++..+. -...+.++|..|+||||+|+.+++..--. .+++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 589999999999999998762 34668899999999999999887622100 0111 111
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH-hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCc
Q 044700 205 VGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK-SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGS 283 (795)
Q Consensus 205 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 283 (795)
+.-.....+. +..++...+.. -..+++-++|+|++........+.+...+.......
T Consensus 95 i~g~~~~gid----------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 95 IDGASHRGIE----------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eeccccCCHH----------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1100000111 11111111111 112566788999986555556777777777655566
Q ss_pred EEEEEcC-ChHHHHhhCC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 284 KILVTTD-DQSIADKIGS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 284 ~iivTtR-~~~va~~~~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
.+|++|. ...+...... .+++.+++.++....+.+.+-..+.. -..+.+..|++.++|.+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 6666653 3333322222 28999999999988887765322211 124567788999998764
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00018 Score=80.17 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=111.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch--hcc----------------Cc-eeEEEE
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV--MRY----------------FD-IRIWVG 206 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~~wv~ 206 (795)
++++|-+..++.+...+..+. -..++.++|..|+||||+|+.+++..-- ... +. .++.++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 579999999999999997763 3456789999999999999987762100 000 00 111221
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 207 ASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 207 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.+.. ...+++...+... ..+++-++|+|++...+.+..+.+...+..-...
T Consensus 93 aas~-------------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 93 AASN-------------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred cccc-------------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 1111 1123333333221 1245668999999777777888888888766666
Q ss_pred cEEEEEcCCh-HHHHhhC---CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 283 SKILVTTDDQ-SIADKIG---STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 283 s~iivTtR~~-~va~~~~---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
+++|++|.+. .+..... ..+++.+++.++....+.+.+-..+.. -..+.++.|++.++|.+.-+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 7777666553 2222221 129999999999988887766332221 12456788999999988544433
No 123
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.1e-07 Score=93.54 Aligned_cols=176 Identities=21% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcc-cccCc--ccccccccCCCc
Q 044700 580 FLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTS-LASMP--KEIERLTRLSAQ 654 (795)
Q Consensus 580 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~lp--~~i~~L~~L~l~ 654 (795)
.|++|||++..|+ .+---++.+.+|+.|.|.++..-..+-..|.+-.+|+.|+++.|+ +++.. --+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L--- 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL--- 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH---
Confidence 4888888888877 444456778889999999986666666778888999999999873 43221 123444444
Q ss_pred CCCCcceEEEeccCCCC--CCchhh-hhcCccEEEEeCCCCCC---CCCC-CCCCCccCeeecccccCceeeCccccCCC
Q 044700 655 PPEYLMRLEIRDYRGST--FPSWID-LLSRLTILSLKDWTNCE---QLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIK 727 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~--lp~~i~-~l~~L~~L~L~~~~~~~---~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 727 (795)
..|+++=+.... +...+. --++|..|+|+++...- .+.. ...+|+|..|+|+.|..++. .-+.
T Consensus 263 -----~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~--- 332 (419)
T KOG2120|consen 263 -----DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQ--- 332 (419)
T ss_pred -----hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHH---
Confidence 666766554321 111222 23678889998886422 2222 46789999999998876654 1121
Q ss_pred CCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCC
Q 044700 728 SGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYC 773 (795)
Q Consensus 728 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C 773 (795)
.+..|+.|++|.++.|-.+.--.......+|.|..|++-+|
T Consensus 333 -----~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 -----EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -----HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 23469999999999886554322333344999999999988
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=9.4e-05 Score=74.70 Aligned_cols=150 Identities=13% Similarity=0.225 Sum_probs=87.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
...+.|+|..|+|||.|++++++ +....-..++|++... +... .. .+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------~~----~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------GP----ELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------hH----HHHHh
Confidence 46889999999999999999987 3332223567776432 2111 01 11222
Q ss_pred cCCCeEEEEEeCCCCC-ChhhHHH-HHHhhcC-CCCCcEEEEEcCChHH---------HHhhCC--cccCCCCChHhHHH
Q 044700 249 IARNRFILVIDDVWIE-DNSTWES-LLQTLQE-GRPGSKILVTTDDQSI---------ADKIGS--TENIRRASDEASWS 314 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~iivTtR~~~v---------a~~~~~--~~~l~~L~~~~~~~ 314 (795)
+.+- =++|+||+... ....|.. +...+.. ...|..+|+|++...- ...+.. .+++++++.++-..
T Consensus 95 ~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 95 LEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 2222 26889999532 1234543 4433322 1346778888875432 112211 18899999999999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 315 LFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
++.+++...+- .. -+++..-|++.+.|..-++..+
T Consensus 174 il~~ka~~~~~-~l---~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 174 ALQLRASRRGL-HL---TDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 99877644321 11 1466777788777765544433
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.9e-06 Score=85.07 Aligned_cols=193 Identities=19% Similarity=0.141 Sum_probs=105.1
Q ss_pred HhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCccc-CCCCcCcEEeccCCCCC-Cccchhhc
Q 044700 546 LDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEEL-CGLWNLQTLELNWCTNL-ETLPQGMG 623 (795)
Q Consensus 546 ~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~~-~~lp~~i~ 623 (795)
|...++.++.|||.+|....+ .++...+.+|++|++|+|+.|.+..--..+ -.+.+|++|-|.++... ......+.
T Consensus 66 ~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 333367788888888843322 344455678888888888888765322222 24568888888876433 23444567
Q ss_pred cCcccceeecCCcccccCc---ccccccccCCCcCCCCcceEEEeccCCCC---CCchhhhhcCccEEEEeCCCCCCCCC
Q 044700 624 KLINLEHLLNVGTSLASMP---KEIERLTRLSAQPPEYLMRLEIRDYRGST---FPSWIDLLSRLTILSLKDWTNCEQLA 697 (795)
Q Consensus 624 ~l~~L~~L~l~~~~l~~lp---~~i~~L~~L~l~~~~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~L~~~~~~~~l~ 697 (795)
.++.++.|.++.|++..+- ..+.. ..+.+.+|+..+|.... +-.....++|+..+-+..|.+...-.
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 7788888888877443221 00000 01122344444433210 01111246777777777776543221
Q ss_pred --CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccccccc
Q 044700 698 --PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECE 757 (795)
Q Consensus 698 --~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 757 (795)
....+|.+-.|+|+.+. +... ... ..+.+||.|..|.+.++|-++.+.+.
T Consensus 217 ek~se~~p~~~~LnL~~~~-idsw----asv-----D~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANN-IDSW----ASV-----DALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred cccCCCCCcchhhhhcccc-cccH----HHH-----HHHcCCchhheeeccCCcccccccCC
Confidence 24556666677776432 1111 111 12446888888888777766655443
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00027 Score=73.47 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=86.1
Q ss_pred CceeecchhHHHHHHHH---hCC----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 146 SETCGVDEEKEDLVSKL---LSS----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
..++|.+..+++|.++. ... ......+.++|.+|+||||+|+.+++.....+.-...-|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---
Confidence 36888877777555442 111 01234588999999999999999987321111111122454441
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCc
Q 044700 213 VLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE---------DNSTWESLLQTLQEGRPGS 283 (795)
Q Consensus 213 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs 283 (795)
.+ +...+.+.. .......+... . .-+|++|++..- ..+..+.+...+.....+.
T Consensus 100 -~~----l~~~~~g~~---------~~~~~~~l~~a-~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~ 162 (287)
T CHL00181 100 -DD----LVGQYIGHT---------APKTKEVLKKA-M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL 162 (287)
T ss_pred -HH----HHHHHhccc---------hHHHHHHHHHc-c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 12 222221111 11122233332 2 248999998431 1223344555555555566
Q ss_pred EEEEEcCChHH----------HHhhCCcccCCCCChHhHHHHHHHHhhc
Q 044700 284 KILVTTDDQSI----------ADKIGSTENIRRASDEASWSLFESAAFF 322 (795)
Q Consensus 284 ~iivTtR~~~v----------a~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 322 (795)
+||+++....+ ...+...+++++++.++..+++.+.+-.
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 77777754433 2222223889999999999998887643
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=0.00015 Score=80.35 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=106.2
Q ss_pred ceeecchh--HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHH
Q 044700 147 ETCGVDEE--KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 147 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
-++|.... ......+..........+.|+|..|+|||+|++++++ .+.... ..+++++ ..++...+..
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~ 188 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVD 188 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHH
Confidence 34465433 3333333333322346789999999999999999998 333222 2344543 4466777776
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh-hh-HHHHHHhhcCC-CCCcEEEEEcCChH-HH---
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN-ST-WESLLQTLQEG-RPGSKILVTTDDQS-IA--- 295 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~-~~-~~~l~~~l~~~-~~gs~iivTtR~~~-va--- 295 (795)
.+.... .....+++.+. ..-+||+||+..... .. .+.+...+... ..|..||+|+.... ..
T Consensus 189 ~l~~~~-----------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l 256 (450)
T PRK14087 189 ILQKTH-----------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGF 256 (450)
T ss_pred HHHHhh-----------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhc
Confidence 664311 11223333333 344889999954321 22 23343333221 34557888875332 11
Q ss_pred -----HhhCCc--ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 296 -----DKIGST--ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 296 -----~~~~~~--~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
..+... .++++++.++-.+++.+++-..+.. ..--+++..-|++.+.|.|-.+.-+.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 111111 7799999999999999888432210 01225678889999999987665444
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00019 Score=82.12 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=108.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+++||.+..+..|.+++..+. -...+.++|..|+||||+|+.+++..--....+. -.+... ..-+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHhcCCC
Confidence 589999999999999988762 3456789999999999999998873210000000 000000 00000000000
Q ss_pred CCcccCC-CCCCChHH---HHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChHHHHhhC
Q 044700 226 ASASAFS-SQGQELEP---YLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV-TTDDQSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~-~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~~~~ 299 (795)
......+ ......++ +...+... ..+++-++|+|++...+....+.|...+..-.....+|+ ||....+.....
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 0000000 00111222 22222111 124556889999976666778888888876555666665 444444543332
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIV 353 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~l 353 (795)
.. +++.+++.++....+...+-..+.. -..+....|++.++|..- |+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 8899999999887777655322211 113456778888888763 44433
No 129
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=6.2e-05 Score=75.26 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=114.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCcee-EEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIR-IWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~i~~~l 224 (795)
.+++|.+..+..+.+.+... ...+...+|++|.|||+-|+.+++..--...|.++ +=.++|..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~----- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE----- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-----
Confidence 57899999999999999984 78899999999999999998888733223445433 223333321111 0000
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhc--CCCe-EEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH-HHhhCC
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSI--ARNR-FILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI-ADKIGS 300 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~~~ 300 (795)
...+...+.....+.. ..++ -.||||++.....+.|..+...+......++.|+.+-..+. ......
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0000111110110000 1123 47889999888889999999999987777776655544332 222222
Q ss_pred c---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 301 T---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 301 ~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
. +.-++|..++..+-+...+-..+-.. ..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcH
Confidence 2 88999999999988888775443322 2455678888888854
No 130
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00024 Score=80.53 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=111.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|-+..+..+..++.... -...+.++|+.|+||||+|+.+++..--..... ...+....+-. .|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C~----~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSCK----SIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHHH----HHHcCCC
Confidence 589999999999999998763 445688999999999999999988321110000 00011111110 0100000
Q ss_pred CCcccCC-CCCCChHHHHHHH---HHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhhC
Q 044700 226 ASASAFS-SQGQELEPYLRYI---RKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~l---~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~ 299 (795)
....... ......+++.... ... ..+++-++|+|++...+...++.+...+..-.....+|++|.. ..+.....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 0000000 0112233333222 111 2356668999999776667788888888765566666666543 33333222
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
.. ++..+++.++....+.+.+...+.. --.+.+..|++.++|.+-.+.
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 22 8899999999888887766433221 124556778888999875443
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.97 E-value=8.2e-05 Score=88.72 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=39.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+.++||+.++.+++..|... ...-+.++|.+|+||||+|+.+++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999887 4455669999999999999999983
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00029 Score=80.91 Aligned_cols=198 Identities=19% Similarity=0.187 Sum_probs=111.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|.+..+..|..++.... -...+.++|..|+||||+|+.+++..--. ..+.... ..+..-..-+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCC----CCCcccHHHHHHhcCCC
Confidence 578999999999999988763 34678899999999999999998732110 1100000 01111111111111111
Q ss_pred CCcccCCC-CCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhhC
Q 044700 226 ASASAFSS-QGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~ 299 (795)
........ .....+++...+... ..+++-++|+|++.....+.++.|...+..-.....+|++|.+ ..+.....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 00000000 112233333333221 1245568999999776667888888888765455555554443 33433332
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.. +++..++.++....+...+-..+... -.+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 88889999888877776653222111 1245778899999987654433
No 133
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00011 Score=77.72 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=109.4
Q ss_pred CCceeecchhHHHHHHHHhCCCC--CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 145 RSETCGVDEEKEDLVSKLLSSST--EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 145 ~~~~vGr~~~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
|..++||+.+++.+..++...-+ ..+-+.|.|-+|.|||.+...++.+..-...=-.++++++..-....+++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 37899999999999999976533 6788999999999999999999985432111125588888776678888998888
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCC--CeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcCChHH--H--
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIAR--NRFILVIDDVWIEDNSTWESLLQTLQEG-RPGSKILVTTDDQSI--A-- 295 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v--a-- 295 (795)
.+..... ......+....+.....+ ..+|+|+|.+..-....-..+...|.|. -+++|+|+.---..+ .
T Consensus 229 ~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 229 SLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 8822211 111124455555555544 3589999987321111112233334332 466776653311111 1
Q ss_pred --HhhC------Cc-ccCCCCChHhHHHHHHHHhh
Q 044700 296 --DKIG------ST-ENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 296 --~~~~------~~-~~l~~L~~~~~~~Lf~~~a~ 321 (795)
.... +. +..++-+.++-.++|..+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 1111 11 66788899999999998873
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.92 E-value=0.00043 Score=71.99 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=84.9
Q ss_pred ceeecchhHHHHHHHHh---CC----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCH
Q 044700 147 ETCGVDEEKEDLVSKLL---SS----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDV 213 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 213 (795)
.++|.++.+++|.++.. .. .....-+.++|.+|.||||+|+.+++...........-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 58888877776655322 11 00223688999999999999988776221111111123444442
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcE
Q 044700 214 LSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE---------DNSTWESLLQTLQEGRPGSK 284 (795)
Q Consensus 214 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ 284 (795)
.+ +...+.+.. .......+.+. ..-+|+||++..- ..+.++.+...+.....+.+
T Consensus 99 ~~----l~~~~~g~~---------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 DD----LVGQYIGHT---------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred HH----HhHhhcccc---------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 12 222222111 11222233332 2358899998421 12334556666655556667
Q ss_pred EEEEcCChHHHH----------hhCCcccCCCCChHhHHHHHHHHhh
Q 044700 285 ILVTTDDQSIAD----------KIGSTENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 285 iivTtR~~~va~----------~~~~~~~l~~L~~~~~~~Lf~~~a~ 321 (795)
||+++....... .+...+++++++.+|-.+++...+-
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 777765432211 1122388999999999999988763
No 135
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=3e-05 Score=83.48 Aligned_cols=121 Identities=11% Similarity=0.124 Sum_probs=79.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.++++.+...+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.++..++..+++..+.-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP--- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP--- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC---
Confidence 46888899999999999865 57888999999999999999985544456788999999998887766543211
Q ss_pred CCcccCCCCCCChHHHHHHHHHhc--CCCeEEEEEeCCCCCChhh-HHHHHHhhc
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSI--ARNRFILVIDDVWIEDNST-WESLLQTLQ 277 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdvw~~~~~~-~~~l~~~l~ 277 (795)
.... -.....-..+.+.... .++++++|+|++-..+.+. +.++...+.
T Consensus 248 -~~vg---y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 248 -NGVG---FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred -CCCC---eEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0000 0000011122222222 2468999999996555433 455544443
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=2e-06 Score=95.11 Aligned_cols=110 Identities=28% Similarity=0.385 Sum_probs=65.5
Q ss_pred ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcccc
Q 044700 515 VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAEL 594 (795)
Q Consensus 515 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l 594 (795)
..+..+++|..|++.+|. +... ...+.. +++|++|++++| .+ ..+ ..+..++.|+.|++++|.|..+
T Consensus 89 ~~l~~~~~l~~l~l~~n~-----i~~i-~~~l~~-~~~L~~L~ls~N-~I----~~i-~~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-----IEKI-ENLLSS-LVNLQVLDLSFN-KI----TKL-EGLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred cccccccceeeeeccccc-----hhhc-ccchhh-hhcchheecccc-cc----ccc-cchhhccchhhheeccCcchhc
Confidence 335566777777777765 2221 111333 677777777777 34 222 2355666677777777777765
Q ss_pred CcccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccc
Q 044700 595 PEELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 595 p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~ 639 (795)
. .+..+.+|+.+++++|. +..+... +..+.+|+.+++.+|.+.
T Consensus 156 ~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 156 S-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred c-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 4 34447777777777763 3333322 456677777777777554
No 137
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.92 E-value=0.00033 Score=71.32 Aligned_cols=201 Identities=18% Similarity=0.113 Sum_probs=119.2
Q ss_pred Cceeecc---hhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVD---EEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~---~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~ 217 (795)
+..||-. +.++++.++|..+.. ...-+.|||.+|+|||++++++.+.--.... --.++.|......+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4566643 445566666665543 5677999999999999999999863211100 1157788888999999999
Q ss_pred HHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCC-CeEEEEEeCCCCC------ChhhHHHHHHhhcCCCCCcEEEEEcC
Q 044700 218 SSIAEALGASASAFSSQGQELEPYLRYIRKSIAR-NRFILVIDDVWIE------DNSTWESLLQTLQEGRPGSKILVTTD 290 (795)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTtR 290 (795)
..|+.+++.+.. ...............++. +--+||+|++.+. .+.+.-.....+.+.-.=+-|.+-|+
T Consensus 114 ~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 114 SAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999998875 334444444444445543 4458999998441 11222223344444445556677776
Q ss_pred ChHHHHhhCCc-------ccCCCCCh-HhHHHHHHHHhh--cCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 291 DQSIADKIGST-------ENIRRASD-EASWSLFESAAF--FNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 291 ~~~va~~~~~~-------~~l~~L~~-~~~~~Lf~~~a~--~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
..--+-..+.. +.++.-.. ++...|+..... .-..+ ..-...++++.|...++|+.--+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHH
Confidence 54433222211 44444333 444555533221 11111 112346789999999999874433
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=0.00019 Score=73.99 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=81.5
Q ss_pred CceeecchhHHHHHHH---HhC----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 146 SETCGVDEEKEDLVSK---LLS----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
..++|.+..+++|.+. +.. .......+.++|++|+||||+|+.+++...-...-....++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA-- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH--
Confidence 3588988777666533 211 0114567889999999999999999873210011111123333221
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCCcE
Q 044700 213 VLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED--------NSTWESLLQTLQEGRPGSK 284 (795)
Q Consensus 213 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ 284 (795)
++. .... ..........+... . .-+|++|++..-. .+..+.+...+........
T Consensus 84 --~l~----~~~~---------g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 84 --DLV----GEYI---------GHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred --Hhh----hhhc---------cchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 111 1110 01112222233222 2 2488999985311 2234445555544434445
Q ss_pred EEEEcCChHH----------HHhhCCcccCCCCChHhHHHHHHHHhh
Q 044700 285 ILVTTDDQSI----------ADKIGSTENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 285 iivTtR~~~v----------a~~~~~~~~l~~L~~~~~~~Lf~~~a~ 321 (795)
+|+++...+. ...+...+++++++.++-.+++.+.+-
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5666544332 122212278889999999999987764
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00059 Score=77.73 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=107.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
++++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+..--...-+ ..+++.-..-+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 589999999999999998763 456678899999999999999876211000000 000000011111111000
Q ss_pred CCcccCCC-CCCChHHH---HHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChHHHHhhC
Q 044700 226 ASASAFSS-QGQELEPY---LRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT-DDQSIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~---~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~va~~~~ 299 (795)
......+. .....+++ ...+... ..+++-++|+|++.......+..|...+..-.....+|++| ....+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 00000000 01122222 2222211 23566688999997666677888888776544455555544 4433333222
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
.. ++..+++.++....+...+-..+... ..+.+..|++.++|.+..+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 22 88899999998888877663322111 1345677888888877543
No 140
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.87 E-value=8.4e-05 Score=81.03 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=86.7
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|+++.++++.+.+... -...+-|.++|++|+|||++|+++++. .... |+.++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~~---- 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVGS---- 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeehH----
Confidence 57899999999998876421 014567899999999999999999983 3322 3333211
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhh---cC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNSTWESLLQTL---QE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~~~~~l~~~l---~~-- 278 (795)
++. ....+. ....+...+...-...+.+|++||+..- +.+....+...+ ..
T Consensus 200 ~l~----~~~~g~---------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 200 ELV----QKFIGE---------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHh----Hhhccc---------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 111100 1111122222222356789999998421 111122233222 11
Q ss_pred CCCCcEEEEEcCChHHHHh--hC-----CcccCCCCChHhHHHHHHHHhh
Q 044700 279 GRPGSKILVTTDDQSIADK--IG-----STENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~--~~-----~~~~l~~L~~~~~~~Lf~~~a~ 321 (795)
...+..||.||...+.... .. ..++++..+.++-.++|+.+..
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 1235677777765543221 11 1288999999999999987763
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=7.6e-05 Score=79.50 Aligned_cols=137 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCC-CccccC
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLL-KIAELP 595 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~-~l~~lp 595 (795)
+..+.+++.|++++|. +.. +|. + -.+|+.|.+++|..+ ..+|..+ ..+|++|++++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~-----L~s-LP~-L---P~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCD-----IES-LPV-L---PNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCC-----Ccc-cCC-C---CCCCcEEEccCCCCc----ccCCchh--hhhhhheEccCcccccccc
Confidence 5567889999999875 222 232 1 346999999988666 5666554 257999999988 677777
Q ss_pred cccCCCCcCcEEeccCCC--CCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCC
Q 044700 596 EELCGLWNLQTLELNWCT--NLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFP 673 (795)
Q Consensus 596 ~~i~~L~~L~~L~L~~~~--~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp 673 (795)
.. |+.|++.++. .+..+|.+ |+.|.+.++... .+..+. ..-|++|+.|.+++|....+|
T Consensus 112 ~s------Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~-~~~~lp------~~LPsSLk~L~Is~c~~i~LP 172 (426)
T PRK15386 112 ES------VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPE-NQARID------NLISPSLKTLSLTGCSNIILP 172 (426)
T ss_pred cc------cceEEeCCCCCcccccCcch------Hhheeccccccc-cccccc------cccCCcccEEEecCCCcccCc
Confidence 53 6666666542 34556653 555655432210 000000 012356688888887765555
Q ss_pred chhhhhcCccEEEEeCC
Q 044700 674 SWIDLLSRLTILSLKDW 690 (795)
Q Consensus 674 ~~i~~l~~L~~L~L~~~ 690 (795)
..+. .+|+.|+++.|
T Consensus 173 ~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 173 EKLP--ESLQSITLHIE 187 (426)
T ss_pred cccc--ccCcEEEeccc
Confidence 4332 57888888765
No 142
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=7.5e-07 Score=91.99 Aligned_cols=255 Identities=19% Similarity=0.160 Sum_probs=145.2
Q ss_pred cceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCC-ccc--cCccc
Q 044700 522 NLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLK-IAE--LPEEL 598 (795)
Q Consensus 522 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-l~~--lp~~i 598 (795)
.|+.|.+.++... -...+..+... ++++..|.+.+|..+++ ..+-..-..+.+|++|+|..|. ++. +-.-.
T Consensus 139 ~lk~LSlrG~r~v---~~sslrt~~~~-CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAV---GDSSLRTFASN-CPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccC---CcchhhHHhhh-CCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 4666667665421 11222333344 99999999999965532 2222333568999999999853 442 22234
Q ss_pred CCCCcCcEEeccCCCCCCc--cchhhccCcccceeecCCccc------ccCcccccccccCCC---------------cC
Q 044700 599 CGLWNLQTLELNWCTNLET--LPQGMGKLINLEHLLNVGTSL------ASMPKEIERLTRLSA---------------QP 655 (795)
Q Consensus 599 ~~L~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~~l------~~lp~~i~~L~~L~l---------------~~ 655 (795)
..+++|.+|+++.|..+.. +..-...+.+|+.+.+.||.= ..+......+-.+.+ ..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 4789999999999976643 222244556677776666621 001000000001100 01
Q ss_pred CCCcceEEEeccCCCCCCch-----hhhhcCccEEEEeCCCCCCCC--CC-CCCCCccCeeecccccCceeeCccccCCC
Q 044700 656 PEYLMRLEIRDYRGSTFPSW-----IDLLSRLTILSLKDWTNCEQL--AP-LGNLPSLESLSLFSMGSVRKVGNEFLGIK 727 (795)
Q Consensus 656 ~~~L~~L~l~~~~~~~lp~~-----i~~l~~L~~L~L~~~~~~~~l--~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 727 (795)
...|+.|..+++.. ++.. ..+.++|+.|.++.|+..... .. -.+++.|+.|++..|..+...
T Consensus 293 c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------- 362 (483)
T KOG4341|consen 293 CHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------- 362 (483)
T ss_pred hhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--------
Confidence 22345555555432 2211 125677777777777643322 22 246777888777766533321
Q ss_pred CCCCccCCCCCCcceeeecCCcccccc-----cccccccccccceeeecCCCCCcC-------CCCCCCcceeccCCCC
Q 044700 728 SGIASSVTYFPRLKSLKFVNMEEWGDW-----ECEMANVMPCLCSLSFVYCPELKA-------LPGIFLSQVIKPVKDL 794 (795)
Q Consensus 728 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~p~L~~L~l~~C~~L~~-------lP~~L~~L~i~~~~~l 794 (795)
.+.+...++|.|+.|.++.|....+- ...... +..|+.|.+.+||.++. .-..|+.++..+|.+-
T Consensus 363 -tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~-~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 363 -TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS-LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred -hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc-ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 12223358999999999988765543 111223 77899999999998765 1135777777777664
No 143
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.2e-05 Score=79.63 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=110.0
Q ss_pred EEEEEeeCCCCC--Cccc-cccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCC
Q 044700 502 HLFLRVSEGISF--PVSV-SEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNL 578 (795)
Q Consensus 502 ~l~l~~~~~~~~--~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l 578 (795)
-+.+.++.+... ...+ ..++.++.+++.+|..+ -...+...+.. ++.|++|+|+.|+ ++.-...+| ..+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS---dWseI~~ile~-lP~l~~LNls~N~-L~s~I~~lp---~p~ 120 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS---DWSEIGAILEQ-LPALTTLNLSCNS-LSSDIKSLP---LPL 120 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc---cHHHHHHHHhc-CccceEeeccCCc-CCCccccCc---ccc
Confidence 344444444433 2222 36788999999998742 23344555666 9999999999984 422112333 356
Q ss_pred CCCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCcc---chhhccC-cccceeecCCcc---------cccCcc
Q 044700 579 EFLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETL---PQGMGKL-INLEHLLNVGTS---------LASMPK 643 (795)
Q Consensus 579 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~l---p~~i~~l-~~L~~L~l~~~~---------l~~lp~ 643 (795)
.+|+.|-|.++.+. ..-..+..++.++.|.++.|+. ..+ ...+... +.+++|...+|. +..+-+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 78999999998876 5556777888889998887732 111 1111112 245555555552 211111
Q ss_pred cc-------cccccC----CCcCCCCcceEEEeccCCCCCC--chhhhhcCccEEEEeCCCCCCCCCC-------CCCCC
Q 044700 644 EI-------ERLTRL----SAQPPEYLMRLEIRDYRGSTFP--SWIDLLSRLTILSLKDWTNCEQLAP-------LGNLP 703 (795)
Q Consensus 644 ~i-------~~L~~L----~l~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~~l~~-------l~~l~ 703 (795)
++ +-++.+ ...+++.+--|.+..++..... ..+..++.|+.|.++++.+++.+.. ++.|+
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 11 001111 1223344444444444332211 1233677777777777777664432 56677
Q ss_pred ccCeeecc
Q 044700 704 SLESLSLF 711 (795)
Q Consensus 704 ~L~~L~L~ 711 (795)
+++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 77777554
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.00016 Score=85.62 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=85.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcc---hhccC-ceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYK---VMRYF-DIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
+.++||+++++++++.|... ...-+.++|.+|+|||++|+.+++... +...+ +..+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 47999999999999998776 344567999999999999999998321 11111 333442 1 111111
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhc-CCCeEEEEEeCCCCCC---------hhhHHHHHHhhcCCCCCcEEEEEcCC
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSI-ARNRFILVIDDVWIED---------NSTWESLLQTLQEGRPGSKILVTTDD 291 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iivTtR~ 291 (795)
. +.. ...+.++....+.+.+ ..++.+|++|++..-. .+.-+.+...+.. ..-++|-+|..
T Consensus 251 a---~~~-----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 251 A---GTK-----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred h---hcc-----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 0 000 1112222222222222 3467899999984210 1122333333332 12345555543
Q ss_pred hHHHHh------hCC---cccCCCCChHhHHHHHHHHh
Q 044700 292 QSIADK------IGS---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 292 ~~va~~------~~~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
.+.... ... .++++.++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 111 28899999999999998654
No 145
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.2e-05 Score=55.72 Aligned_cols=33 Identities=45% Similarity=0.490 Sum_probs=20.4
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCC
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWC 612 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 612 (795)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 566666666666666665666666666666666
No 146
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.9e-07 Score=100.77 Aligned_cols=107 Identities=29% Similarity=0.284 Sum_probs=45.3
Q ss_pred cCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccccCcccccccccCCC
Q 044700 575 IGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLASMPKEIERLTRLSA 653 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l 653 (795)
+.-++.|+.|||++|+++..- .+..|++|.+|||++| .+..+|.- ...+ +|+.|.+.+|.++.+ .++.+|++|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL-- 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSL-- 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhh--
Confidence 333444555555555544332 4444555555555544 33333331 1111 245555555544433 233444433
Q ss_pred cCCCCcceEEEeccCCCCCC--chhhhhcCccEEEEeCCCCC
Q 044700 654 QPPEYLMRLEIRDYRGSTFP--SWIDLLSRLTILSLKDWTNC 693 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~ 693 (795)
+.|+++.|-..... ..+..+..|+.|.|.+|.++
T Consensus 257 ------~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 ------YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ------hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 44444444322211 11234444555555555543
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.81 E-value=0.0013 Score=64.85 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=73.2
Q ss_pred CceeecchhHHHHHHHHh---CCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
+.++|.+..++.|++-.. .+. ...-+.+||..|.|||++++++.+... .. +.--|.|...
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~--~~--GLRlIev~k~------------ 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYA--DQ--GLRLIEVSKE------------ 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHh--hc--CceEEEECHH------------
Confidence 689999999988876432 222 556788899999999999999998321 11 1222333322
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCC---C-CCcEEEEEcCChHH
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQEG---R-PGSKILVTTDDQSI 294 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~~---~-~gs~iivTtR~~~v 294 (795)
+..++..+.+.++. ...||+|++||+.-+ .......+.+.+..+ . ....|..||-.+++
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 23334444444442 357999999998543 334677777777543 1 23334455544444
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00044 Score=72.72 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=112.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch-------------hccCceeEEEEeCCCCC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV-------------MRYFDIRIWVGASADSD 212 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs~~~~ 212 (795)
.+++|-+..++.+...+..+. -.....++|..|+||+++|..+++..-- ...+.-..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 578999999999999998863 3589999999999999999877652100 01112223442110000
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE
Q 044700 213 VLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 213 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 287 (795)
-..+-.+-++..+..... .....++++. .+.+.+ .+++-++|+|++...+....+.+...+..-....-|++
T Consensus 83 g~~~~~~~~~~~~~~~~~--~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLKRKA--PPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILI 159 (314)
T ss_pred ccccchhhhhhccccccc--cccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 000000111111100000 0122233332 233332 35667899999977777788888888865444433445
Q ss_pred EcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 288 TTDDQSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 288 TtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
|+....+.....+. +++.+++.++..+.+.+...... .......++..++|.|..+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 55444444443333 99999999999999987642110 011135788899999976544
No 149
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00073 Score=71.49 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCc
Q 044700 251 RNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIGST---ENIRRASDEASWSLFESAAFFNRSQ 326 (795)
Q Consensus 251 ~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~ 326 (795)
+++-++|+|++...+.+..+.+...+..-..++.+|+||.+.. +.....+. +.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 3444567799988888888999888876556777777776653 43333322 8999999999998887643 111
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 327 EVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233557788999999866555
No 150
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=3.9e-06 Score=92.89 Aligned_cols=192 Identities=25% Similarity=0.226 Sum_probs=126.3
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
+..+..+++..| .+ ...-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++| .++.+. ++..++.|+
T Consensus 71 l~~l~~l~l~~n-~i----~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LI----AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLK 143 (414)
T ss_pred hHhHHhhccchh-hh----hhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchh
Confidence 566777778777 45 44445578899999999999999988766888999999999998 566654 477888899
Q ss_pred eeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCCCCCCCccCee
Q 044700 630 HLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAPLGNLPSLESL 708 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 708 (795)
.|++.+|.+..+. ++..+++| +.+++++|....+... ...+.+|+.+.+.+|.+...- .+..+..+..+
T Consensus 144 ~L~l~~N~i~~~~-~~~~l~~L--------~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDIS-GLESLKSL--------KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLL 213 (414)
T ss_pred hheeccCcchhcc-CCccchhh--------hcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHh
Confidence 9999999887663 33334444 7788888887766553 577888888888888654321 22223333333
Q ss_pred ecccccCceeeCccccCCCCCCCccCCCCCC--cceeeecCCcccccccccccccccccceeeecCC
Q 044700 709 SLFSMGSVRKVGNEFLGIKSGIASSVTYFPR--LKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYC 773 (795)
Q Consensus 709 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C 773 (795)
++..+.. ..+ .+ +..++. |+.+.+.+++.-..+ .....++.+..|++.+.
T Consensus 214 ~l~~n~i-~~~----~~--------l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 214 SLLDNKI-SKL----EG--------LNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSN 265 (414)
T ss_pred hcccccc-eec----cC--------cccchhHHHHHHhcccCcccccc--ccccccccccccchhhc
Confidence 4443221 111 01 112333 888888887543321 11223777777777765
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.00074 Score=74.53 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=96.6
Q ss_pred eeecchh--HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 148 TCGVDEE--KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 148 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++|.... ...+..+..........+.|+|..|+|||+|++++++ ++.... ..++|++ ..++...+...
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~ 184 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNA 184 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHH
Confidence 4575543 2233333333222346789999999999999999998 443333 2455664 33444555555
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChh-hH-HHHHHhhcCC-CCCcEEEEEcCCh-HHH----
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNS-TW-ESLLQTLQEG-RPGSKILVTTDDQ-SIA---- 295 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~iivTtR~~-~va---- 295 (795)
+... ..+... +.+.+ .-+|||||+...... .+ +.+...+... ..|..+|+|+... .-.
T Consensus 185 ~~~~---------~~~~~~----~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 185 LRNN---------KMEEFK----EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred HHcC---------CHHHHH----HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhh
Confidence 4321 122222 22222 348899999542211 11 2233333211 2355677777542 211
Q ss_pred ----HhhCC--cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchH
Q 044700 296 ----DKIGS--TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 296 ----~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
..+.. .+++++.+.++-..++.+.+-..+..- -+++...|++.+.|..-.
T Consensus 251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL----PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCHHH
Confidence 11211 178889999999999988874432211 245677777887776653
No 152
>PF14516 AAA_35: AAA-like domain
Probab=97.72 E-value=0.0023 Score=68.21 Aligned_cols=202 Identities=11% Similarity=0.117 Sum_probs=117.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-----CCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-----SDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 220 (795)
+..|+|...-+++.+.|... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++... .+....++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 46778887777788888774 369999999999999999999884332 233 4668887642 2455555555
Q ss_pred HHHhcCCccc-------CCCCCCChHHHHHHHHHhc---CCCeEEEEEeCCCCCCh--hhHHHHHHhh----cCCC----
Q 044700 221 AEALGASASA-------FSSQGQELEPYLRYIRKSI---ARNRFILVIDDVWIEDN--STWESLLQTL----QEGR---- 280 (795)
Q Consensus 221 ~~~l~~~~~~-------~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdvw~~~~--~~~~~l~~~l----~~~~---- 280 (795)
+..+...-.- +.............+.+.+ ..++.+|++|+|..--. .-.+++...+ ....
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 5544432210 0001122223334444432 25899999999842211 1112222222 1111
Q ss_pred -CCcEEEEEcCCh-HHH-Hh------hCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 281 -PGSKILVTTDDQ-SIA-DK------IGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 281 -~gs~iivTtR~~-~va-~~------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
..-++++....+ .+. .. ++..++|++++.+|...|..+.-..- . ....++|...+||+|.-+.
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCCHHHHH
Confidence 111222222111 111 11 11118899999999999988764211 1 1228899999999999999
Q ss_pred HHhhhcCCC
Q 044700 352 IVGRTLHFK 360 (795)
Q Consensus 352 ~lg~~L~~~ 360 (795)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999988765
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.001 Score=73.61 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=96.5
Q ss_pred eeecchh--HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-c-eeEEEEeCCCCCHHHHHHHHHHH
Q 044700 148 TCGVDEE--KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-D-IRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 148 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++|-... .....++..... ...-+.|+|.+|+|||+||+++++ .+...+ + .++|++. .++...+...
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 4474433 233334433332 345699999999999999999999 444433 3 4566643 4566666665
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhH-HHHHHhhcC-CCCCcEEEEEcC-ChHHH----
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTW-ESLLQTLQE-GRPGSKILVTTD-DQSIA---- 295 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~va---- 295 (795)
+.... .++ +.+....+.-+|++||+... +...+ +++...+.. ...|..||+||. ...-.
T Consensus 179 ~~~~~---------~~~----f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 179 MKEGK---------LNE----FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred Hhccc---------HHH----HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 53221 122 22223334558999999532 11111 223222221 123457888874 33221
Q ss_pred HhhC----C--cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 296 DKIG----S--TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 296 ~~~~----~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
.... . .+++++.+.++-..++.+.+...+..- -+++...|++.+.|.-
T Consensus 246 ~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l----~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 246 DRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL----PEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHhccccCH
Confidence 1111 1 178899999999999988874322211 1456677777777654
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.71 E-value=0.00028 Score=72.56 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=60.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
..+.++|..|+|||.||.++++. ....-..+++++ ..+++..+........ .....+ +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc------cccHHH----HHHHh
Confidence 46899999999999999999994 433333456664 4455666655543221 111222 22333
Q ss_pred CCCeEEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcCC
Q 044700 250 ARNRFILVIDDVWIEDNSTWES--LLQTLQEG-RPGSKILVTTDD 291 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 291 (795)
.+-. ||||||+......+|.. +...+... ..|..+|+||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4333 89999995443344543 33333221 356679999853
No 155
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=1.2e-05 Score=78.52 Aligned_cols=248 Identities=19% Similarity=0.150 Sum_probs=150.5
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-------cccCCCCCCCeEEcCC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-------AEIGNLEFLRYLNLSL 588 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-------~~i~~l~~L~~L~L~~ 588 (795)
.+..+..+..+++++|..+. .....+...+.. -++|++.+++.. ........++ ..+-++++|+..+||.
T Consensus 25 el~~~d~~~evdLSGNtigt-EA~e~l~~~ia~-~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGT-EAMEELCNVIAN-VRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHhhcceeEEeccCCcccH-HHHHHHHHHHhh-hcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 34457778888888886421 112233344444 678888888765 3322222333 3455788999999999
Q ss_pred CCcc-ccCc----ccCCCCcCcEEeccCCCCCCccchh-h-------------ccCcccceeecCCcccccCcccccccc
Q 044700 589 LKIA-ELPE----ELCGLWNLQTLELNWCTNLETLPQG-M-------------GKLINLEHLLNVGTSLASMPKEIERLT 649 (795)
Q Consensus 589 ~~l~-~lp~----~i~~L~~L~~L~L~~~~~~~~lp~~-i-------------~~l~~L~~L~l~~~~l~~lp~~i~~L~ 649 (795)
|.+. ..|+ .|++-..|.+|.+++| .++.+... | .+-+.|+......|.+...|.....
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a-- 178 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA-- 178 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH--
Confidence 8876 3443 5667788999999887 44433221 2 3456788888888877655533211
Q ss_pred cCCCcCCCCcceEEEeccCCCCCCch--------hhhhcCccEEEEeCCCCCCC----CCC-CCCCCccCeeecccccCc
Q 044700 650 RLSAQPPEYLMRLEIRDYRGSTFPSW--------IDLLSRLTILSLKDWTNCEQ----LAP-LGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 650 ~L~l~~~~~L~~L~l~~~~~~~lp~~--------i~~l~~L~~L~L~~~~~~~~----l~~-l~~l~~L~~L~L~~~~~l 716 (795)
..+..+.+|+.+.+..|.+. |.. +..+++|+.|+|.+|.++.. +.. +...+.|+.|.+..|-.-
T Consensus 179 -~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 179 -ALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred -HHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 12233456688888877654 332 23679999999999987642 221 667788999999887521
Q ss_pred eeeCccccCCCCCCCccCCCCCCcceeeecCCcccccc------cccccccccccceeeecCCCCCcC
Q 044700 717 RKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDW------ECEMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
..-...+... .+-..+|+|..|.+.++..-... +.-....+|-|..|.+.++ .++.
T Consensus 256 ~~G~~~v~~~-----f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 256 NEGVKSVLRR-----FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred cccHHHHHHH-----hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 1111111110 01135789999988886432211 1112234999999999887 4554
No 156
>PRK06620 hypothetical protein; Validated
Probab=97.69 E-value=0.00051 Score=68.16 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=73.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~------------------------~-~-------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF------------------------N-E-------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh------------------------c-h-------hHH
Confidence 6799999999999999999887432 1 1211 0000 0 0 001
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH-------HHhhCCc--ccCCCCChHhHHHHHHHHh
Q 044700 250 ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI-------ADKIGST--ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-------a~~~~~~--~~l~~L~~~~~~~Lf~~~a 320 (795)
+..-++++||+..-.....-.+...+. ..|..||+|++...- ...+... +++++++.++-..++.+.+
T Consensus 84 -~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 -EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 123478899994221112222222222 356689998874432 1222222 8999999999888887766
Q ss_pred hcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 321 FFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
...+- . --+++..-|++.+.|.--
T Consensus 161 ~~~~l-~---l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 161 SISSV-T---ISRQIIDFLLVNLPREYS 184 (214)
T ss_pred HHcCC-C---CCHHHHHHHHHHccCCHH
Confidence 32211 1 114556667777666543
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.68 E-value=0.00045 Score=82.90 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=84.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcc---hhccC-ceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYK---VMRYF-DIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
+.++||+++++++++.|... ...-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 46899999999999999876 344556999999999999999987321 11111 234553 1 221111
Q ss_pred HHhcCCcccCCCCCCChHHHHH-HHHHhcCCCeEEEEEeCCCCC--------ChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 222 EALGASASAFSSQGQELEPYLR-YIRKSIARNRFILVIDDVWIE--------DNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
.+.. ...+.++... .+...-..++.+|++|++..- ....-+.+...+.. ..-++|.+|...
T Consensus 248 ---ag~~-----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ 317 (821)
T CHL00095 248 ---AGTK-----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLD 317 (821)
T ss_pred ---ccCC-----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHH
Confidence 1111 1112222222 222222356899999998310 11111223322222 234566666555
Q ss_pred HHHHhh------C-Cc--ccCCCCChHhHHHHHHHH
Q 044700 293 SIADKI------G-ST--ENIRRASDEASWSLFESA 319 (795)
Q Consensus 293 ~va~~~------~-~~--~~l~~L~~~~~~~Lf~~~ 319 (795)
+..... . .. +++...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 442211 1 11 778888989988887653
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.0006 Score=75.28 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=83.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
...+.|+|..|+|||+|++++++ .+......+++++ ...+...+...+.... ...++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~~-------------~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSGE-------------MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcch-------------HHHHHHH
Confidence 46789999999999999999998 4433333455654 3344555555543211 1223333
Q ss_pred cCCCeEEEEEeCCCCCChh--hHHHHHHhhcCC-CCCcEEEEEcCCh-H----H----HHhhCC--cccCCCCChHhHHH
Q 044700 249 IARNRFILVIDDVWIEDNS--TWESLLQTLQEG-RPGSKILVTTDDQ-S----I----ADKIGS--TENIRRASDEASWS 314 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~~~~--~~~~l~~~l~~~-~~gs~iivTtR~~-~----v----a~~~~~--~~~l~~L~~~~~~~ 314 (795)
.. ..-++++||+...... ..+++...+... ..|..||+||... . + ...+.. .+++.+++.++-..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 33 3448888998443211 112233322211 2355788887542 2 1 111211 17899999999999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHHHcCC
Q 044700 315 LFESAAFFNRSQEVREHLEHIGRKIVQQCHD 345 (795)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 345 (795)
++.+++-..+..- -.++..-|+..+.|
T Consensus 279 iL~~k~~~~~~~l----~~evl~~la~~~~~ 305 (445)
T PRK12422 279 FLERKAEALSIRI----EETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHHcCCCC----CHHHHHHHHHhcCC
Confidence 9988774332111 13344445555554
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=2.7e-06 Score=74.38 Aligned_cols=59 Identities=31% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 639 (795)
.+..|+|++|.|..+|.++..++.|+.|+++.| .+...|..|..|.+|-.|+..+|.+.
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCCccc
Confidence 444444444444444444444444444444444 23334444444444444444444333
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=5.4e-05 Score=53.73 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=33.1
Q ss_pred CcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc
Q 044700 602 WNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP 642 (795)
Q Consensus 602 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp 642 (795)
++|++|++++| .+..+|..+.+|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999998 67788888999999999999999887664
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0019 Score=72.86 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
...+.|+|..|+|||.|++++++ .....+ -.++|++ ..++..++...+... ..+ .++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~----~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGD----SFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHH----HHH
Confidence 45689999999999999999999 444332 2455664 344555554444321 111 222
Q ss_pred HhcCCCeEEEEEeCCCCCCh-hhHH-HHHHhhcCC-CCCcEEEEEcCCh--H-------HHHhhCCc--ccCCCCChHhH
Q 044700 247 KSIARNRFILVIDDVWIEDN-STWE-SLLQTLQEG-RPGSKILVTTDDQ--S-------IADKIGST--ENIRRASDEAS 312 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw~~~~-~~~~-~l~~~l~~~-~~gs~iivTtR~~--~-------va~~~~~~--~~l~~L~~~~~ 312 (795)
+.+.+ -=+|||||+..... +.|. .+...+... ..|..|||||... + +...+... ++|+..+.+.-
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 33332 34889999954321 2232 233222211 3456788888753 1 12222222 89999999999
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 313 WSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
..++.+++...+-.. -.++..-|++.+.+..
T Consensus 452 ~aIL~kka~~r~l~l----~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 452 IAILRKKAVQEQLNA----PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHHhcCCCC----CHHHHHHHHHhccCCH
Confidence 999998874432211 1355566666665543
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00042 Score=63.69 Aligned_cols=89 Identities=19% Similarity=0.088 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
...+.|+|++|+||||+|+.++... ......+++++.+........... ........ ...........+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~ 73 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALAL 73 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHHH
Confidence 3689999999999999999999843 222234666665544332222211 01111111 112222223333344
Q ss_pred cCCC-eEEEEEeCCCCCC
Q 044700 249 IARN-RFILVIDDVWIED 265 (795)
Q Consensus 249 l~~~-~~LlVlDdvw~~~ 265 (795)
.... ..+|++|++....
T Consensus 74 ~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 74 ARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHhcCCCEEEEECCcccC
Confidence 3433 4899999996654
No 163
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00032 Score=69.52 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=106.9
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
.+|||.++-++++.=.+... .+..--|.++|++|.||||||.-+++ +....+. +. |.+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~t-sGp------------ 86 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----IT-SGP------------ 86 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ec-ccc------------
Confidence 58999999888887777543 22678899999999999999999999 4433321 11 100
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC--------CCCcEEE--------
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG--------RPGSKIL-------- 286 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs~ii-------- 286 (795)
......++...+.. |+ ..=++++|.+..-....-+.+...+.++ ++++|.+
T Consensus 87 -----------~leK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 87 -----------ALEKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -----------cccChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11122233333332 22 2336677888655543334444444332 3455543
Q ss_pred ---EEcCChHHHHhhC----CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhh
Q 044700 287 ---VTTDDQSIADKIG----STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGR 355 (795)
Q Consensus 287 ---vTtR~~~va~~~~----~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~ 355 (795)
-|||.-.+..... ...+++.-+.+|-.++..+.|..-+- .--.+-+.+|++...|-|--+.-+-+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 4888665544333 23788888999999999887732111 11245688999999999965544443
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.61 E-value=0.00023 Score=77.86 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=86.5
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.+..+++|.+.+... -...+-|.++|++|+|||++|+++++ +....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 46789999999888877421 01456788999999999999999999 443333 222211
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNS---TWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~-- 278 (795)
++. ....+ .....+...+.....+.+.+|+||++..- +.+ ....+...+..
T Consensus 252 eL~----~k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ELI----QKYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred hhh----hhhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111 11110 01111222333333457789999986210 000 11222222221
Q ss_pred CCCCcEEEEEcCChHHHHhh--C--Cc---ccCCCCChHhHHHHHHHHh
Q 044700 279 GRPGSKILVTTDDQSIADKI--G--ST---ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~~--~--~~---~~l~~L~~~~~~~Lf~~~a 320 (795)
...+.+||.||...+..... . .. ++++..+.++..++|..+.
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 13466788888766544332 1 11 8899999999999998765
No 165
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00084 Score=73.23 Aligned_cols=240 Identities=17% Similarity=0.144 Sum_probs=124.4
Q ss_pred cchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCcc
Q 044700 151 VDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS-DVLSVASSIAEALGASAS 229 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~ 229 (795)
|..-..++.+.+... .. ++.|.|+-++||||+++.+.... ... .+++..-+.. +..++ .+.
T Consensus 22 ~~~~~~~l~~~~~~~--~~-i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l-~d~--------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLR--PF-IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIEL-LDL--------- 83 (398)
T ss_pred HHhhhHHHHhhcccC--Cc-EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhH-HHH---------
Confidence 334455555555444 22 99999999999999997776632 111 4555433221 11111 111
Q ss_pred cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHH-----hhCCc---
Q 044700 230 AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIAD-----KIGST--- 301 (795)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~-----~~~~~--- 301 (795)
...+...-..++..|+||.|.. ...|......+.+.++. +|++|+-+..... .....
T Consensus 84 ------------~~~~~~~~~~~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 84 ------------LRAYIELKEREKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred ------------HHHHHHhhccCCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 1111111112788999999944 46899988888887766 8998887765432 22222
Q ss_pred ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhccccccccc
Q 044700 302 ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQVQYIER 381 (795)
Q Consensus 302 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~~~~~~~ 381 (795)
+++-|||..|...+-...+. .... ...-.-.-..||.|-++..-...-+ .......++.....+....
T Consensus 149 ~~l~PlSF~Efl~~~~~~~~-------~~~~-~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~~Di~~~~~~-- 216 (398)
T COG1373 149 LELYPLSFREFLKLKGEEIE-------PSKL-ELLFEKYLETGGFPESVKADLSEKK--LKEYLDTILKRDIIERGKI-- 216 (398)
T ss_pred EEECCCCHHHHHhhcccccc-------hhHH-HHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHHHHHHHHcCc--
Confidence 89999999998765331010 0011 1122223356888887754322111 0112222222211111000
Q ss_pred cccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHHccccccc
Q 044700 382 HHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 382 ~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~~sll~~~ 451 (795)
... ..++..+.+++.... ..+....+.+.+- | + ..++...|++-|.+.-++...
T Consensus 217 ----------~~~-~~~k~i~~~l~~~~g-~~~s~~~la~~l~--~-i-s~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 217 ----------ENA-DLMKRILRFLASNIG-SPISYSSLARELK--G-I-SKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred ----------ccH-HHHHHHHHHHHhhcC-CccCHHHHHHHHh--c-c-chHHHHHHHHHHHHhhheEEe
Confidence 011 334555555554433 2345555555442 1 1 145667777777777766643
No 166
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.60 E-value=0.00074 Score=75.52 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=107.3
Q ss_pred eeecch--hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc--eeEEEEeCCCCCHHHHHHHHHHH
Q 044700 148 TCGVDE--EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD--IRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 148 ~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
++|... .......+..........+.|+|..|+|||+|++++++ +....+. .++|++. .++...+...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 446443 23334444333322456799999999999999999999 4544442 3456643 3344444444
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChh--hHHHHHHhhcC-CCCCcEEEEEcCChH--H----
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNS--TWESLLQTLQE-GRPGSKILVTTDDQS--I---- 294 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~~--v---- 294 (795)
+... ..+. +.+.+. +.-+|||||+...... ..+.+...+.. ...|..||+|+.... +
T Consensus 197 ~~~~---------~~~~----~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 197 LRNN---------TMEE----FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE 262 (450)
T ss_pred HHcC---------cHHH----HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 4321 1122 223333 2448999999542111 12233332221 123456788776432 1
Q ss_pred ---HHhhCC--cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH----HHHhh---hcCCC-C
Q 044700 295 ---ADKIGS--TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI----KIVGR---TLHFK-T 361 (795)
Q Consensus 295 ---a~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai----~~lg~---~L~~~-~ 361 (795)
...+.. .+++++.+.++-..++.+.+-..+.. --+++..-|++.+.|..-.+ ..+.. ..... +
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it 338 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID----LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPIT 338 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 122222 28889999999999999887432211 12456778888888776533 22221 11222 6
Q ss_pred HHHHHHHHhh
Q 044700 362 EKEWQSILDS 371 (795)
Q Consensus 362 ~~~w~~~l~~ 371 (795)
....+.++..
T Consensus 339 ~~~~~~~l~~ 348 (450)
T PRK00149 339 LELAKEALKD 348 (450)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 167
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=3.2e-05 Score=89.51 Aligned_cols=133 Identities=26% Similarity=0.285 Sum_probs=77.5
Q ss_pred cccceeEEEEEeeCCCC--CCcccc-ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc
Q 044700 496 RRVKLSHLFLRVSEGIS--FPVSVS-EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP 572 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~--~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp 572 (795)
...+++||.+.+...-. .+..++ .+|.|++|.+.+-.. ..+.+...... +++|+.||++++ ++ ..+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~----~~~dF~~lc~s-FpNL~sLDIS~T-nI----~nl- 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF----DNDDFSQLCAS-FPNLRSLDISGT-NI----SNL- 188 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee----cchhHHHHhhc-cCccceeecCCC-Cc----cCc-
Confidence 44567777776543211 133333 478888888877542 12223333334 788888888877 45 333
Q ss_pred cccCCCCCCCeEEcCCCCccccC--cccCCCCcCcEEeccCCCCCCcc--c----hhhccCcccceeecCCcccc
Q 044700 573 AEIGNLEFLRYLNLSLLKIAELP--EELCGLWNLQTLELNWCTNLETL--P----QGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 573 ~~i~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~~l--p----~~i~~l~~L~~L~l~~~~l~ 639 (795)
..+++|++|+.|.+.+-.+..-. ..+.+|++|+.||+|.......- . +.-..|++||.|+.+++.+.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 56777888888877776665322 35667888888888765332211 1 11134677777777776544
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00087 Score=78.51 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=86.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch---hcc-CceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV---MRY-FDIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
+.++||+++++++++.|... ...-+.++|.+|+|||++|+.+++.... -.. .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-----
Confidence 47999999999999999886 3344568999999999999999873211 111 13444421 11111
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhc-CCCeEEEEEeCCCCC--------ChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSI-ARNRFILVIDDVWIE--------DNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
+.+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-++|-+|...
T Consensus 254 --laG~~-----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 --LAGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --hcccc-----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 11111 1112222222222222 346779999998421 112222233333322 234555555444
Q ss_pred HHHHhh-------CC--cccCCCCChHhHHHHHHHHh
Q 044700 293 SIADKI-------GS--TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 293 ~va~~~-------~~--~~~l~~L~~~~~~~Lf~~~a 320 (795)
+..... .. .++++.++.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432111 11 18899999999999988654
No 169
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=1.7e-05 Score=91.79 Aligned_cols=110 Identities=23% Similarity=0.164 Sum_probs=57.7
Q ss_pred cCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccC
Q 044700 520 VQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELC 599 (795)
Q Consensus 520 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~ 599 (795)
-.+|++|++++... ...+.+.. ++.-+|.|+.|.+.+-...+ .++.....++++|+.||+|+++++.+ ..++
T Consensus 121 r~nL~~LdI~G~~~---~s~~W~~k-ig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL---FSNGWPKK-IGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccch---hhccHHHH-HhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 45666676666431 11222222 22226667777666642211 23333445666777777777776666 5666
Q ss_pred CCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcc
Q 044700 600 GLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTS 637 (795)
Q Consensus 600 ~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~ 637 (795)
+|++||+|.+.+=.... ..-..+.+|++|++||++...
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 77777777666432111 111235566666666666553
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.00047 Score=76.50 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=88.0
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-----CceeEEEEeCC
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRY-----FDIRIWVGASA 209 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 209 (795)
.++.|.+..+++|.+.+... -...+-|.++|++|.|||++|+++++.. ... +....|+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 56889999999998876421 0134668999999999999999999943 222 22344555443
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCC-------hhh-----HHHHHHhh
Q 044700 210 DSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIED-------NST-----WESLLQTL 276 (795)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~-------~~~-----~~~l~~~l 276 (795)
.. + +....+. .......+....+.. -.+++++|++|++..-- ..+ ...+...+
T Consensus 260 ~e----L----l~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 PE----L----LNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred hh----h----cccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 21 1 1100000 000111222222222 23578999999984210 011 12333333
Q ss_pred cCC--CCCcEEEEEcCChHHHHh-h-C--C---cccCCCCChHhHHHHHHHHh
Q 044700 277 QEG--RPGSKILVTTDDQSIADK-I-G--S---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 277 ~~~--~~gs~iivTtR~~~va~~-~-~--~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
... ..+..||.||-..+.... + . . .++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 322 134455556654433221 1 1 1 28899999999999998875
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.52 E-value=0.0013 Score=79.25 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=38.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+.++||+.++.+++..|... ...-+.++|.+|+|||++|+.++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999886 4455568999999999999998873
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.51 E-value=0.00057 Score=77.96 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=39.9
Q ss_pred CceeecchhHHHHHHHHhCCCC---CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSST---EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~---~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
++++|-++.++++..++....- ..+++.|+|++|+||||+++.+++.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999876421 4468999999999999999999984
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=0.00014 Score=66.20 Aligned_cols=21 Identities=48% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 044700 172 ISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (795)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 174
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0024 Score=68.33 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=81.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
....+.|||..|.|||.|++++.+ ...........++++ .+......+..+.... ...+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~~-------------~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDNE-------------MEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhhh-------------HHHHHH
Confidence 578999999999999999999999 555555433333332 3344445544443321 234444
Q ss_pred hcCCCeEEEEEeCCCCCCh-hhHH-HHHHhhcC-CCCCcEEEEEcCChH---------HHHhhCCc--ccCCCCChHhHH
Q 044700 248 SIARNRFILVIDDVWIEDN-STWE-SLLQTLQE-GRPGSKILVTTDDQS---------IADKIGST--ENIRRASDEASW 313 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~~~---------va~~~~~~--~~l~~L~~~~~~ 313 (795)
.. .-=++++||++.-.. +.|+ ++...|.. ...|-.||+|++... +...+... +++.+++.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 44 334888999854211 1222 22222221 123448999985432 22222222 899999999999
Q ss_pred HHHHHHhhcCC
Q 044700 314 SLFESAAFFNR 324 (795)
Q Consensus 314 ~Lf~~~a~~~~ 324 (795)
.++.+++...+
T Consensus 251 aiL~kka~~~~ 261 (408)
T COG0593 251 AILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHhcC
Confidence 99998774433
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0021 Score=68.49 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred Cceee-cchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCG-VDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
..++| -+..++.+.+.+..+. -.....++|+.|+||||+|+.+.+..--....... .+....+ -+.+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~----c~~~~--- 73 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTN----CKRID--- 73 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHH----HHHHh---
Confidence 35677 6667777777776653 45677999999999999998886621100000000 0000000 00000
Q ss_pred cCCcccC-----CCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-H
Q 044700 225 GASASAF-----SSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-I 294 (795)
Q Consensus 225 ~~~~~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 294 (795)
.+..+.. .......+++.+.+... ..+.+-++|+|++...+.+..+.+...+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000000 00112233333333221 234566899999977777778888888877667777777776543 3
Q ss_pred HHhhCCc---ccCCCCChHhHHHHHHH
Q 044700 295 ADKIGST---ENIRRASDEASWSLFES 318 (795)
Q Consensus 295 a~~~~~~---~~l~~L~~~~~~~Lf~~ 318 (795)
....... +++.+++.++..+.+..
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3333332 89999999999887764
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.48 E-value=0.00078 Score=64.61 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=37.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++||-++.++++.-.-.++ +..-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH
Confidence 57999999998877666665 788899999999999998888887
No 177
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=1.7e-05 Score=69.47 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=76.4
Q ss_pred CeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccC-CCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 551 TTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELC-GLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
..+..++|+.|. +.. ....+..+....+|...+|++|.+..+|+.+. +.+-+++|++.+| .+..+|..+..++.|+
T Consensus 27 kE~h~ldLssc~-lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccch-hhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhh
Confidence 456678888883 300 02233345566777778888888888887665 4457888888877 6778888888888888
Q ss_pred eeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCc
Q 044700 630 HLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS 674 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~ 674 (795)
.|+++.|.+...|.-+..|.+| -.|+..++....+|-
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l--------~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKL--------DMLDSPENARAEIDV 140 (177)
T ss_pred hcccccCccccchHHHHHHHhH--------HHhcCCCCccccCcH
Confidence 8888888777777666555555 455555555544543
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.0017 Score=61.37 Aligned_cols=122 Identities=22% Similarity=0.203 Sum_probs=74.3
Q ss_pred ecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh------------------ccCceeEEEEeCCC-
Q 044700 150 GVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM------------------RYFDIRIWVGASAD- 210 (795)
Q Consensus 150 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~vs~~- 210 (795)
|-++..+.+.+.+..+. -...+.++|..|+||+|+|..+++..--. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44566777777777763 45678999999999999998887621000 11222333332221
Q ss_pred --CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE
Q 044700 211 --SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVT 288 (795)
Q Consensus 211 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 288 (795)
..++++. .+.+.+..... .++.=++|+|++...+.+.+..|...+..-..++.+|++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2222221 33333222211 245668999999888888999999999888888999888
Q ss_pred cCChH
Q 044700 289 TDDQS 293 (795)
Q Consensus 289 tR~~~ 293 (795)
|++..
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 87765
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.46 E-value=0.00044 Score=75.09 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=85.9
Q ss_pred CceeecchhHHHHHHHHhCC---C--------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---S--------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.+..+++|.+.+... . ...+-|.++|++|.|||+||+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 57889999998888766421 1 14678999999999999999999983 32232 22211 1
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNS---TWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~-- 278 (795)
.+ .....+. ....+...+.......+.+|++|++... +.. .+..+...+..
T Consensus 214 ~l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 EF----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HH----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 11 1111110 1112223333334567899999997321 001 12223332222
Q ss_pred CCCCcEEEEEcCChHHHHh--hC--C---cccCCCCChHhHHHHHHHHh
Q 044700 279 GRPGSKILVTTDDQSIADK--IG--S---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~--~~--~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
...+..||.||...+.... .. . .++++..+.++..++|....
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 2345678888876544321 11 1 17888888888888887654
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.44 E-value=0.0011 Score=79.61 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=39.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+.++||+.++.++++.|... ...-+.++|.+|+||||+|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999887 4455669999999999999999883
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.42 E-value=0.00092 Score=67.53 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
....+.++|.+|+|||+||.++++ ......-.++++++. +++..|-...... ..... .+ +
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~--------~~~~~---~l-~ 159 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG--------QSGEK---FL-Q 159 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc--------chHHH---HH-H
Confidence 346899999999999999999999 444444446676543 4555554433211 11111 12 2
Q ss_pred hcCCCeEEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcC
Q 044700 248 SIARNRFILVIDDVWIEDNSTWE--SLLQTLQEG-RPGSKILVTTD 290 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 290 (795)
.+ .+--||||||+.......|. .+...+... .+.--+||||-
T Consensus 160 ~l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 160 EL-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred Hh-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22 34569999999544333443 333333322 22334677774
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0063 Score=63.99 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=101.4
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc--------eeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD--------IRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..+.+.+.+..+. -...+.+.|+.|+||+++|+.+++-.--..... .+-++..+..+|...+ .
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (325)
T PRK06871 10 TYQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E 80 (325)
T ss_pred HHHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c
Confidence 3455666666652 356788999999999999998876210000000 0001111111111000 0
Q ss_pred CCcccCCCCCCChHHHHHHHHH---h-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCC
Q 044700 226 ASASAFSSQGQELEPYLRYIRK---S-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGS 300 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~ 300 (795)
+.. .....++++...... . ..+++-++|+|++...+.+..+.+...+..-..++.+|++|.+. .+.....+
T Consensus 81 -p~~---~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 81 -PID---NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred -ccc---CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000 011234444332222 1 13566688899998888888899999887766777777777655 44444333
Q ss_pred c---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 301 T---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 301 ~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
. +.+.+++.++..+.+..... . . ...+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 2 99999999999888876531 1 0 112556678899999644
No 183
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.0064 Score=72.22 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=73.0
Q ss_pred CceeecchhHHHHHHHHhCC------CC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS------ST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.|...+... .. ...++.++|+.|+|||+||+.++. .. +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----
Confidence 57899999999998888742 11 345789999999999999999998 32 2334566655422211
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCC-CeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIAR-NRFILVIDDVWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdvw~~~~~~~~~l~~~l~~~ 279 (795)
.+...++...... +..... .+.+.+.. ..-+++||++...+.+.++.+...+..+
T Consensus 525 ~~~~lig~~~gyv--g~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYV--GFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCc--ccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1222222222110 111112 23333333 3459999999887777888888877654
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0067 Score=63.69 Aligned_cols=184 Identities=16% Similarity=0.117 Sum_probs=101.2
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-----eeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-----IRIWVGASADSDVLSVASSIAEALGAS 227 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~vs~~~~~~~~~~~i~~~l~~~ 227 (795)
...+.+...+..+. -...+.++|+.|+||+++|..+++..--..... ++-|+..+..+|..-+. ..+
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 44566666666652 345799999999999999988876211000000 00011000001100000 000
Q ss_pred cc-c-CCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCC
Q 044700 228 AS-A-FSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGS 300 (795)
Q Consensus 228 ~~-~-~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~ 300 (795)
.. . .......++++....... ..+++-++|+|++...+...-+.+...+..-..++.+|++|.+. .+.....+
T Consensus 83 ~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred CcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 00 0 000011233333222211 13456799999997777777788888887655677777666544 44444333
Q ss_pred c---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 301 T---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 301 ~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
. +.+.+++.+++.+.+.... .+ ...+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~~---~~-------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQG---VS-------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHcC---CC-------hHHHHHHHHHcCCCHHHHHHHh
Confidence 3 8899999999988876531 11 2225677999999998765544
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.0012 Score=66.52 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=64.3
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCC
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSS 233 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 233 (795)
.+..+.++..........+.++|.+|+|||+||.++++. ....-..+++++ +.+++..+-.....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~------- 148 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN------- 148 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh-------
Confidence 344455554432223467899999999999999999994 333333556663 44555555443321
Q ss_pred CCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcC
Q 044700 234 QGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWES--LLQTLQEG-RPGSKILVTTD 290 (795)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 290 (795)
.....+.+ .+.+. +.=+|||||+.......|.. +...+... ...-.+||||-
T Consensus 149 ~~~~~~~~----l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 149 SETSEEQL----LNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred ccccHHHH----HHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 11122222 23333 34488999996655456663 33333221 22345677774
No 186
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.0085 Score=59.02 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=106.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeC-CCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGAS-ADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
+.+++.++|.-|.|||+++++...... =+.++=|.+. ...+...+...|+..+...... ......++....+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHH
Confidence 567999999999999999995544211 0112223333 4567778888888888873210 01112233333444
Q ss_pred Hhc-CCCe-EEEEEeCCCCCChhhHHHHHHhhcCCCCCc---EEEEEc----CCh---HHHHhhCCc----ccCCCCChH
Q 044700 247 KSI-ARNR-FILVIDDVWIEDNSTWESLLQTLQEGRPGS---KILVTT----DDQ---SIADKIGST----ENIRRASDE 310 (795)
Q Consensus 247 ~~l-~~~~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTt----R~~---~va~~~~~~----~~l~~L~~~ 310 (795)
... +++| ..+++||......+..+.++-...-...++ +|+..- +.+ .+....+.. |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4666 899999986666566666554443222222 233222 111 111122211 899999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhh
Q 044700 311 ASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGR 355 (795)
Q Consensus 311 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~ 355 (795)
+...++..+.-+...+ .+---.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9888887776443221 1112245677888999999999987764
No 187
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00027 Score=66.52 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=16.6
Q ss_pred hhcCccEEEEeCCCCCCCCC----CCCCCCccCeeeccc
Q 044700 678 LLSRLTILSLKDWTNCEQLA----PLGNLPSLESLSLFS 712 (795)
Q Consensus 678 ~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~ 712 (795)
.++.|++|.+-+|..+.--- -+..+|+|+.|+..+
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 34455555555554432111 145555666665543
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.0011 Score=76.29 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=93.8
Q ss_pred CceeecchhHHHHHHHH---hCCCC-------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKL---LSSST-------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L---~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.++.|.++.++++.+.+ ..... ..+-|.++|++|.|||+||+.+++.. .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 56889887666655543 33211 24568999999999999999998832 22 23333311 1
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC----------hhh----HHHHHHhhcC--C
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED----------NST----WESLLQTLQE--G 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~ 279 (795)
+. .... ......+...+.......+++|++||+..-. ... +..+...+.. .
T Consensus 252 f~----~~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 FV----EMFV---------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HH----HHhh---------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 0000 0111233444555556788999999983210 112 2223322222 2
Q ss_pred CCCcEEEEEcCChHHHHh-h-C-----CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC
Q 044700 280 RPGSKILVTTDDQSIADK-I-G-----STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD 345 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~~-~-~-----~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 345 (795)
..+..||.||...+.... + . ..+.++..+.++-.++++.++-.... . .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCC
Confidence 345567777766543321 1 1 12778888888888888877632111 1 12234567777776
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.0016 Score=65.17 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE--eC--C-----CCCHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG--AS--A-----DSDVLSV 216 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--vs--~-----~~~~~~~ 216 (795)
..+.++......++.+|.+. .+|.+.|.+|.|||+||.++..+.-..+.|+.++.+. ++ + +-+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 46778999999999988764 4999999999999999999887422233454333332 11 1 1122221
Q ss_pred ----HHHHHHHhcCCcccCCCCCCChHHHHH--------HHHHhcCCCeE---EEEEeCCCCCChhhHHHHHHhhcCCCC
Q 044700 217 ----ASSIAEALGASASAFSSQGQELEPYLR--------YIRKSIARNRF---ILVIDDVWIEDNSTWESLLQTLQEGRP 281 (795)
Q Consensus 217 ----~~~i~~~l~~~~~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 281 (795)
++.+...+..-. .....+.... .--.+++|+.+ +||+|+....+..+...+. ...+.
T Consensus 131 ~~p~~~pi~D~L~~~~-----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~ 202 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL-----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHh-----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCC
Confidence 122222221100 0000111000 00124456554 9999999776655555554 44568
Q ss_pred CcEEEEEcC
Q 044700 282 GSKILVTTD 290 (795)
Q Consensus 282 gs~iivTtR 290 (795)
+|++|+|--
T Consensus 203 ~sk~v~~GD 211 (262)
T PRK10536 203 NVTVIVNGD 211 (262)
T ss_pred CCEEEEeCC
Confidence 999999864
No 190
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=8.2e-05 Score=70.75 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=28.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchh-ccCceeEE
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVM-RYFDIRIW 204 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 204 (795)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999854433 45677776
No 191
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0069 Score=63.52 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=102.0
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-Cc------eeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-FD------IRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~------~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...+++.+.+..+. -...+.+.|+.|+||+++|+.++.-.--... .. .+-++..+..+|...+ .
T Consensus 10 ~~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------K 80 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 34455666665552 4568999999999999999888762100000 00 0000100111110000 0
Q ss_pred CCcccCCCCCCChHHHHHHHHHhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIG 299 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~ 299 (795)
... ......++++... .+.+ .+++-++|+|++...+.+..+.+...+..-..++.+|++|.+. .+.....
T Consensus 81 p~~---~~~~I~vdqiR~l-~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 81 PEK---EGKSITVEQIRQC-NRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred cCc---CCCcCCHHHHHHH-HHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 0012233444332 2222 3455688999997777788899999887666667776665554 4555444
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
+. +.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHHh
Confidence 43 8999999999988886531 1 1 13467889999999776553
No 192
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0035 Score=75.28 Aligned_cols=134 Identities=23% Similarity=0.326 Sum_probs=77.2
Q ss_pred CceeecchhHHHHHHHHhCCC------C-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS------T-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+...+.... . ...++.++|+.|+|||++|+.+++. ....-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 579999999999988886421 1 2357899999999999999999872 211222344555443211 11
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCC-CeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIAR-NRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKIL 286 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ii 286 (795)
.+.+-++.+... ...+. ...+...+.. ..-+|+||++...+...+..+...+..+. ..+.||
T Consensus 642 ~~~~LiG~~pgy---~g~~~---~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 642 SVSRLVGAPPGY---VGYEE---GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred hHHHHhCCCCcc---cccch---hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 111122222110 11111 1122333322 23599999997777778888877775431 223377
Q ss_pred EEcCC
Q 044700 287 VTTDD 291 (795)
Q Consensus 287 vTtR~ 291 (795)
+||..
T Consensus 716 ~TSN~ 720 (857)
T PRK10865 716 MTSNL 720 (857)
T ss_pred EeCCc
Confidence 77764
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00039 Score=65.48 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=55.2
Q ss_pred ceEEEeccCCCCCCchhh-hhcCccEEEEeCCCCCC--CCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCC
Q 044700 660 MRLEIRDYRGSTFPSWID-LLSRLTILSLKDWTNCE--QLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTY 736 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (795)
..|.+++|.+..+-+.+. .+++|..|.|.+|.+.. .+..+..||.|++|.+-+++.-..-+-..+ .+..
T Consensus 67 ~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y--------vl~k 138 (233)
T KOG1644|consen 67 HTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY--------VLYK 138 (233)
T ss_pred ceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE--------EEEe
Confidence 444555555444433343 56789999999998754 677799999999999988764333222221 2457
Q ss_pred CCCcceeeecCCc
Q 044700 737 FPRLKSLKFVNME 749 (795)
Q Consensus 737 ~~~L~~L~l~~~~ 749 (795)
+|+|+.|++....
T Consensus 139 lp~l~~LDF~kVt 151 (233)
T KOG1644|consen 139 LPSLRTLDFQKVT 151 (233)
T ss_pred cCcceEeehhhhh
Confidence 8999999998753
No 194
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.00092 Score=68.38 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=55.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
.-+.++|.+|+|||.||..+.+ ........++|++ ..+++..+..... ..........+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~~l~~l---- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR---------ELQLESAIAKL---- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh---------CCcHHHHHHHH----
Confidence 4589999999999999999988 3333333456664 3455555543321 11222222222
Q ss_pred CCCeEEEEEeCCCCCChhhH--HHHHHhhcCCCCCcEEEEEcCCh
Q 044700 250 ARNRFILVIDDVWIEDNSTW--ESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~--~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
. +.-||||||+.......| ..+...+.....+..+||||...
T Consensus 166 ~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 D-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred h-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 1 334999999854332222 22333333221123588888643
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.25 E-value=0.011 Score=70.02 Aligned_cols=159 Identities=13% Similarity=0.206 Sum_probs=86.8
Q ss_pred CceeecchhHHHHHHHHhCC----CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS----STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
.+++|.++.+++|+.+|... .....++.++|++|+||||+|+.++. .....|- -+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccchh
Confidence 47999999999999888742 11456899999999999999999997 3333332 233343333322211110
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhh----HHHHHHhhcCC--------------C-CC
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNST----WESLLQTLQEG--------------R-PG 282 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~----~~~l~~~l~~~--------------~-~g 282 (795)
... .. ....+...+... ....-+++||.+....... ...+...+... . ..
T Consensus 397 ~~~---------g~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 397 TYI---------GS-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ccC---------CC-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 000 11 111233333332 2234578999984332211 23344433321 1 23
Q ss_pred cEEEEEcCChHHHHhhCCc---ccCCCCChHhHHHHHHHHh
Q 044700 283 SKILVTTDDQSIADKIGST---ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 283 s~iivTtR~~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a 320 (795)
.-+|.|+.+..+....-.. +++.+++.++-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3334455443332222122 7888999888888877654
No 196
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.25 E-value=0.0042 Score=74.91 Aligned_cols=135 Identities=24% Similarity=0.300 Sum_probs=80.0
Q ss_pred CceeecchhHHHHHHHHhCCC------C-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS------T-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+...+.... . ...++.++|+.|+|||++|+.+... ....-...+.++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 579999999999999987531 1 2467889999999999999999972 222222344555554322111
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILV 287 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiv 287 (795)
+..-++.+.... +......+...++. ....+|+||++...+...+..+...+..+. ..+-||+
T Consensus 640 -~~~l~g~~~g~~--g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 -VARLIGAPPGYV--GYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred -HHHhcCCCCCcc--CcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111122221110 11111222222222 233589999998888888888888775541 2344777
Q ss_pred EcCC
Q 044700 288 TTDD 291 (795)
Q Consensus 288 TtR~ 291 (795)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7754
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=97.24 E-value=0.002 Score=65.97 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
...+.|+|.+|+|||+||..+.+... ... ..+.+++ ..++...+....... . +...+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~~---------~---~~~~~~~~ 161 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQG---------R---YKTTLQRG 161 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHCC---------c---HHHHHHHH
Confidence 45788999999999999999977321 122 2334443 334444433221110 1 11222222
Q ss_pred cCCCeEEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcCC
Q 044700 249 IARNRFILVIDDVWIEDNSTWE--SLLQTLQEG-RPGSKILVTTDD 291 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 291 (795)
-.+.-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 162 -~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 162 -VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred -hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 234469999999643322222 333333221 2344 7888853
No 198
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.23 E-value=0.0075 Score=72.05 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=38.0
Q ss_pred CceeecchhHHHHHHHHhCC----CCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSS----STEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|.++.+++|..++... .....++.++|++|+|||++|+.+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998876522 11446899999999999999999998
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.23 E-value=0.004 Score=70.51 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=90.9
Q ss_pred CceeecchhHHHHHHHHh---CC-------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SS-------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++++|.++.++++.+.+. .. ....+-+.++|++|+|||+||+.+++.. ... ++.++.. +
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 578898887766655443 21 1134568899999999999999999832 222 2333211 1
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC----------hhhHHH----HHHhhcC--C
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED----------NSTWES----LLQTLQE--G 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~----------~~~~~~----l~~~l~~--~ 279 (795)
+. .... ......+...+.......+.+|++||+..-. ...+.. +...+.. .
T Consensus 124 ~~----~~~~---------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 124 FV----EMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HH----HHHh---------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 11 1110 1112233344444445677899999983210 111222 2222221 2
Q ss_pred CCCcEEEEEcCChHHHH-hh------CCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC
Q 044700 280 RPGSKILVTTDDQSIAD-KI------GSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL 346 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~-~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~ 346 (795)
..+-.||.||...+... .+ ...++++..+.++-.++|....-.... .. ......+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCC
Confidence 23445666675543221 11 112888888888888888876532211 11 11234677777764
No 200
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.22 E-value=0.0017 Score=70.88 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHH-HHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSI-AEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-~~~l 224 (795)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.....-...|.. +.+.-. .+.+++..+ +...
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i~~~ 91 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSIQAL 91 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHHhhh
Confidence 57999999999999998876 46889999999999999999973222223421 111100 122222211 1111
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCC---CeEEEEEeCCCCCChhhHHHHHHhhcCC-----C----CCcEEEEEcCCh
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIAR---NRFILVIDDVWIEDNSTWESLLQTLQEG-----R----PGSKILVTTDDQ 292 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdvw~~~~~~~~~l~~~l~~~-----~----~gs~iivTtR~~ 292 (795)
.... .+.+...| ..-++++|+++.........+...+... + -..++++++.++
T Consensus 92 ~~~g---------------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 92 KDEG---------------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred hhcC---------------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 0000 01111111 1128999999988777777777666322 1 123565555543
Q ss_pred HHH------HhhCCc---ccCCCCChH-hHHHHHHHH
Q 044700 293 SIA------DKIGST---ENIRRASDE-ASWSLFESA 319 (795)
Q Consensus 293 ~va------~~~~~~---~~l~~L~~~-~~~~Lf~~~ 319 (795)
-.. ...... +.+++++.+ +-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 111111 788999754 447777653
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.011 Score=62.70 Aligned_cols=180 Identities=10% Similarity=0.076 Sum_probs=103.6
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc--------eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD--------IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
..-+++.+.+..+. -...+.+.|+.|+||+|+|..++.-.--...-+ .+-++.....+|+..+.
T Consensus 9 ~~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT------- 80 (334)
T ss_pred HHHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------
Confidence 34456677776653 456888999999999999988766210000000 00011111111111000
Q ss_pred cCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhC
Q 044700 225 GASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIG 299 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~ 299 (795)
.... .....++++....... ..+++-++|+|++...+.+.-+.+...+..-..++.+|++|.+. .+.....
T Consensus 81 -p~~~---~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 81 -PEKG---KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred -cccc---cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 0112344444333221 13566799999998778788888998887666677777666654 4554433
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
+. +.+.+++.+++.+.+.... +. . .+.+..++..++|.|..+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~~--~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV---TM--S----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc---CC--C----HHHHHHHHHHcCCCHHHHHHH
Confidence 33 8999999999988776432 11 1 223667899999999755433
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.19 E-value=0.0019 Score=67.65 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=69.9
Q ss_pred ecchhHHHHHHHHhCCCC--CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044700 150 GVDEEKEDLVSKLLSSST--EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGAS 227 (795)
Q Consensus 150 Gr~~~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 227 (795)
++.........++..-.. ..+-+.++|..|+|||.||.++++. ....=-.+.+++++ +++..+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 444555555556653221 3567999999999999999999994 33222235566543 4555555544221
Q ss_pred cccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHH--HHHhh-cCC-CCCcEEEEEcC
Q 044700 228 ASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWES--LLQTL-QEG-RPGSKILVTTD 290 (795)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR 290 (795)
... ..+.. +. +--||||||+.-+....|.. +...+ ... ..+..+|+||-
T Consensus 207 ---------~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ---------SVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---------cHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 112 22222 22 45599999997665667753 44433 322 34566888884
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.19 E-value=0.011 Score=60.96 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHH
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 217 (795)
.-++++..++..+ .-|.+.|.+|+|||+||+.+++ .... ..+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3445555555553 4667999999999999999987 3222 34566666655555544
No 204
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.17 E-value=0.00049 Score=66.12 Aligned_cols=100 Identities=23% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
...-+.++|..|+|||.||..+.+. ....=-.+.|++ ..+++..+- ... ...........+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~----~~~-----~~~~~~~~~~~l-- 106 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELK----QSR-----SDGSYEELLKRL-- 106 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHH----CCH-----CCTTHCHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceecccc----ccc-----cccchhhhcCcc--
Confidence 3467999999999999999999883 222222456664 334444443 221 112222222222
Q ss_pred hcCCCeEEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcC
Q 044700 248 SIARNRFILVIDDVWIEDNSTWES--LLQTLQEG-RPGSKILVTTD 290 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 290 (795)
. +-=||||||+.......|.. +...+... .++ .+||||.
T Consensus 107 --~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN 148 (178)
T PF01695_consen 107 --K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSN 148 (178)
T ss_dssp --H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred --c-cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCC
Confidence 2 23488899996654444443 21111111 233 5777885
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0031 Score=70.56 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=64.8
Q ss_pred CceeecchhHHHHHHHHhCCC----CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS----TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
.+.+|.++-+++|+++|.-.. -...++++||++|+|||.|++.+++ ...+.| +-+++++--|..++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI----- 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI----- 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh-----
Confidence 589999999999999986421 1568999999999999999999998 565565 33445554444332
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCC
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVW 262 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw 262 (795)
.++... -.+.+.. .+.+.+++ .+.+.-+++||.|.
T Consensus 393 ---RGHRRT-YIGamPG-rIiQ~mkk-a~~~NPv~LLDEID 427 (782)
T COG0466 393 ---RGHRRT-YIGAMPG-KIIQGMKK-AGVKNPVFLLDEID 427 (782)
T ss_pred ---cccccc-ccccCCh-HHHHHHHH-hCCcCCeEEeechh
Confidence 222110 0012222 22333332 25577899999884
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.14 E-value=0.0014 Score=78.30 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=77.5
Q ss_pred CceeecchhHHHHHHHHhCC-------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+.+.+... .....++.++|+.|+|||.||+.++.. .-......+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 57999999999999988532 114568999999999999999988762 2111122233333321111 1
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILV 287 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiv 287 (795)
.+.+-++.+.... +......+...++ +....+|+||++...+...++.+...+..+. ..+-||+
T Consensus 640 ~~~~l~g~~~gyv--g~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 640 TVSRLKGSPPGYV--GYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hhccccCCCCCcc--cccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 1111122221110 1111122223332 2455699999997777777888877776552 4456677
Q ss_pred EcC
Q 044700 288 TTD 290 (795)
Q Consensus 288 TtR 290 (795)
||-
T Consensus 715 TSN 717 (852)
T TIGR03345 715 TSN 717 (852)
T ss_pred eCC
Confidence 764
No 207
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.0011 Score=67.96 Aligned_cols=38 Identities=34% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhcc-CceeEEEEe
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRY-FDIRIWVGA 207 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 207 (795)
....+.++|..|+|||+||.++++ .+... -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 356799999999999999999999 44333 345667764
No 208
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.00073 Score=67.18 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA 207 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 207 (795)
-.++|+|..|+|||||+..+.. .....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999987 46678887777754
No 209
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00015 Score=70.97 Aligned_cols=218 Identities=19% Similarity=0.116 Sum_probs=136.6
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcc----ccC-------cccCCCCcCcEEeccCCCCCCcc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA----ELP-------EELCGLWNLQTLELNWCTNLETL 618 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~----~lp-------~~i~~L~~L~~L~L~~~~~~~~l 618 (795)
+..+..++||||..-+.-...+...|.+-.+|+..+++.-... .+| +.+-++++|++.+||.|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 7889999999995332112234455667788999998864322 233 34568999999999999766666
Q ss_pred chh----hccCcccceeecCCcccccCc-----ccccccccC-CCcCCCCcceEEEeccCCCCCCchhh-----hhcCcc
Q 044700 619 PQG----MGKLINLEHLLNVGTSLASMP-----KEIERLTRL-SAQPPEYLMRLEIRDYRGSTFPSWID-----LLSRLT 683 (795)
Q Consensus 619 p~~----i~~l~~L~~L~l~~~~l~~lp-----~~i~~L~~L-~l~~~~~L~~L~l~~~~~~~lp~~i~-----~l~~L~ 683 (795)
|+. |.+-+.|.||.+++|.+..+. ..+..|... ....-+.|+......|+..+.|.... .-.+|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 654 567789999999999775332 112122111 22344567888887777665554322 336899
Q ss_pred EEEEeCCCCCCC-CC-----CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccc-
Q 044700 684 ILSLKDWTNCEQ-LA-----PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWEC- 756 (795)
Q Consensus 684 ~L~L~~~~~~~~-l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 756 (795)
.+.+..|.+... +. .+..+.+|+.|+|..|. ++..+....+ ..+...+.|+.|.+.+|---..-..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La------~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA------DALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH------HHhcccchhhhccccchhhccccHHH
Confidence 999999987532 21 15578899999998743 1211211111 1223466789999988832211110
Q ss_pred ----cccccccccceeeecCCC
Q 044700 757 ----EMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 757 ----~~~~~~p~L~~L~l~~C~ 774 (795)
-....+|+|+.|...++.
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHhhhhcCCCccccccchhh
Confidence 011238899988887764
No 210
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0088 Score=66.78 Aligned_cols=100 Identities=19% Similarity=0.329 Sum_probs=65.8
Q ss_pred CceeecchhHHHHHHHHhCC----CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS----STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 221 (795)
.+.+|.++-+++|++++.-. ..+.+++..+|++|||||.+|+.|+. .....| +-++|++-.|+.++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk---- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK---- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc----
Confidence 58999999999999998643 22679999999999999999999998 555555 345666666655442
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCC
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 261 (795)
+.... -...+ ...+++.++.. +...-|+.+|.|
T Consensus 482 ----GHRRT-YVGAM-PGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 482 ----GHRRT-YVGAM-PGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ----cccee-eeccC-ChHHHHHHHhh-CCCCceEEeehh
Confidence 11110 00111 12233344332 446678999988
No 211
>PRK06526 transposase; Provisional
Probab=97.07 E-value=0.0016 Score=66.28 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
..-+.++|++|+|||+||..+.+... ...+ .+.|+ +..++...+..... . .. ....+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~--------~-~~---~~~~l~~l 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH--------A-GR---LQAELVKL 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh--------c-Cc---HHHHHHHh
Confidence 45689999999999999999987321 1222 23343 33444444433211 1 11 11223322
Q ss_pred cCCCeEEEEEeCCCCCChhhH--HHHHHhhcCC-CCCcEEEEEcCCh
Q 044700 249 IARNRFILVIDDVWIEDNSTW--ESLLQTLQEG-RPGSKILVTTDDQ 292 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~ 292 (795)
.+.-+||+||+.......+ +.+...+... ..++ +|+||...
T Consensus 158 --~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 158 --GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred --ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 2345899999954322222 2233333221 2344 88888644
No 212
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0018 Score=74.45 Aligned_cols=119 Identities=23% Similarity=0.359 Sum_probs=80.1
Q ss_pred CceeecchhHHHHHHHHhCCCC-------CCcEEEEEcCCCChHHHHHHHHhcCcchhccC---ceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSST-------EIPIISILGTEGTGKTTLATLAYNSYKVMRYF---DIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 215 (795)
..++|-+..+..+.+.+..... ...+...+|+.|||||-||++++. .-| +..+-++.|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHH---
Confidence 5799999999999998864322 567888899999999999999887 234 2344444443211
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRF-ILVIDDVWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 279 (795)
-+.+.+-++.+... ...++ ...|.+..++++| +|.||+|-..+++..+.+...+.++
T Consensus 563 -kHsVSrLIGaPPGY-----VGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 -KHSVSRLIGAPPGY-----VGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHHHhCCCCCC-----ceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 12333444444332 11111 3456677778887 7778999887888888888888765
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0055 Score=65.59 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=84.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc-------------------cCceeEEEEe
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR-------------------YFDIRIWVGA 207 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 207 (795)
.++|-+....++..+..........+.++|++|+||||+|..+++..--.. .+..+..++-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467778888888988886543344599999999999999999987321100 1123334433
Q ss_pred CCCCC---HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcE
Q 044700 208 SADSD---VLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSK 284 (795)
Q Consensus 208 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 284 (795)
+.... ..+..+++.+....... .++.-++++|++...+.+.-..+...+..-...+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 33322 22333333333222110 35677999999966666666777777766667778
Q ss_pred EEEEcCCh-HHHHhhCCc---ccCCC
Q 044700 285 ILVTTDDQ-SIADKIGST---ENIRR 306 (795)
Q Consensus 285 iivTtR~~-~va~~~~~~---~~l~~ 306 (795)
+|++|... .+....... +++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88777633 333333322 55555
No 214
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0024 Score=64.34 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 217 (795)
...++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 5689999999999999999999873 33344678999887 66655543
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.0054 Score=64.83 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
..-+.++|..|+|||+||.++++. ....-..++|+++. +++..+...-.. ...+.... +..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~-------~~~~~~~~---~~~- 243 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN-------NDKELEEV---YDL- 243 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc-------cchhHHHH---HHH-
Confidence 367999999999999999999994 33332356676543 344444331111 11111111 222
Q ss_pred cCCCeEEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcC
Q 044700 249 IARNRFILVIDDVWIEDNSTWE--SLLQTLQEG-RPGSKILVTTD 290 (795)
Q Consensus 249 l~~~~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 290 (795)
+. .-=||||||+.......|. .+...+... ..+..+||||-
T Consensus 244 l~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 244 LI-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred hc-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 22 2248999999655433443 233333222 23456888885
No 216
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.0019 Score=62.91 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=65.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
.++.|+|..|.||||+|...+. +...+-..++.+. ..++.+.....++++++...... ......++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~--~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAI--PVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccce--EeCChHHHHHHHHh-h
Confidence 5788999999999999998887 3333333344442 22232222334555554322110 12234455555555 3
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH
Q 044700 250 ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS 293 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (795)
.++.-+||+|.+..-+.++..++...+. ..|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 3455699999985433333444444433 46788999988754
No 217
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.97 E-value=0.0039 Score=70.86 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=37.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999887655 445678999999999999999986
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.97 E-value=0.0027 Score=61.81 Aligned_cols=129 Identities=23% Similarity=0.232 Sum_probs=65.1
Q ss_pred ecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC---------CCHHH----H
Q 044700 150 GVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD---------SDVLS----V 216 (795)
Q Consensus 150 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---------~~~~~----~ 216 (795)
.+..+....++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-. -+..+ .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 456677777777773 369999999999999999988875544577888877742111 01111 1
Q ss_pred HHHHHHHhcCCcccCCCCCCChHHHHHHH------HHhcCCC---eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE
Q 044700 217 ASSIAEALGASASAFSSQGQELEPYLRYI------RKSIARN---RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 217 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 287 (795)
...+...+..-. .....+.+.+.= -.+++|+ ..+||+|++.+...+++..+.. ..+.|||||+
T Consensus 80 ~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEE
T ss_pred HHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEE
Confidence 111222221110 111122211100 0233443 4699999997766666665544 4578999999
Q ss_pred EcC
Q 044700 288 TTD 290 (795)
Q Consensus 288 TtR 290 (795)
+=-
T Consensus 152 ~GD 154 (205)
T PF02562_consen 152 TGD 154 (205)
T ss_dssp EE-
T ss_pred ecC
Confidence 854
No 219
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.023 Score=56.41 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=117.8
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc----chhccCceeEEEEeCCC------------
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY----KVMRYFDIRIWVGASAD------------ 210 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~vs~~------------ 210 (795)
...++++....+.+..... ...-..++|+.|.||-|.+..+.+.. -.+-.-+..-|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 4556777777777766633 67889999999999988776655521 11112234445443221
Q ss_pred ---------CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCCC
Q 044700 211 ---------SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRF-ILVIDDVWIEDNSTWESLLQTLQEGR 280 (795)
Q Consensus 211 ---------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdvw~~~~~~~~~l~~~l~~~~ 280 (795)
..-+-+.++|+++..-...- +.-..+.| ++|+-.+.+-..++-..++.....-.
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qi----------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQI----------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcch----------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 11234555555555433220 01122344 55555554444455666777666656
Q ss_pred CCcEEEEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhh
Q 044700 281 PGSKILVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRT 356 (795)
Q Consensus 281 ~gs~iivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~ 356 (795)
..+|+|+..-+. .+....... +.+...+++|....+++.+-..+-.-+ .+++.+|+++++|.---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHHHH
Confidence 778887643222 122222222 899999999999999988744333221 678999999999875333222222
Q ss_pred cC--------C-C--CHHHHHHHHhhhc
Q 044700 357 LH--------F-K--TEKEWQSILDSKM 373 (795)
Q Consensus 357 L~--------~-~--~~~~w~~~l~~~~ 373 (795)
++ . . ..-+|+-++.+..
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHH
Confidence 21 1 1 4567887776544
No 220
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.96 E-value=0.0062 Score=59.66 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=87.3
Q ss_pred CceeecchhHHH---HHHHHhCCCC----CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKED---LVSKLLSSST----EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~---l~~~L~~~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
+++||.++.+.+ |+.+|..++. -.+-|..+|++|.|||.+|+++++..+ ..| +.+- ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEec-------hHH
Confidence 578998877654 7777776543 678999999999999999999999543 222 1111 111
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC------------ChhhHHHHHHhhcC--CCCCcE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE------------DNSTWESLLQTLQE--GRPGSK 284 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~------------~~~~~~~l~~~l~~--~~~gs~ 284 (795)
-|.+..+. ....+.....+.-+.-++++++|.+.-. -.+..+.+...+.. .+.|..
T Consensus 187 liGehVGd----------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 187 LIGEHVGD----------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHhhh----------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 12222111 1122222233333457899999976211 01222233333332 345666
Q ss_pred EEEEcCChHHHHhh-CCc----ccCCCCChHhHHHHHHHHh
Q 044700 285 ILVTTDDQSIADKI-GST----ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 285 iivTtR~~~va~~~-~~~----~~l~~L~~~~~~~Lf~~~a 320 (795)
.|-.|-+.+..... ... ++..--+++|-.+++...+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 66677666654432 222 5666667888888888776
No 221
>PRK07261 topology modulation protein; Provisional
Probab=96.96 E-value=0.002 Score=61.61 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=24.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcch-hccCceeEE
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKV-MRYFDIRIW 204 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~w 204 (795)
.|.|+|++|+||||||+.+.....+ .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4899999999999999999864322 123455555
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.94 E-value=0.0049 Score=74.09 Aligned_cols=134 Identities=18% Similarity=0.253 Sum_probs=78.5
Q ss_pred CceeecchhHHHHHHHHhCC------CC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS------ST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|-+..++.|...+... .. ...++.++|+.|+|||+||+.+++ ..-..-...+-++.+.-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc---
Confidence 57999999999998888632 11 345678999999999999999987 2211112344444443222111
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCe-EEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNR-FILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKIL 286 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ii 286 (795)
+..-++.+.... ...... .+...+..++ .++++|++...+...++.+...+..+. ..+-+|
T Consensus 584 -~~~l~g~~~gyv--g~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 584 -VSKLIGSPPGYV--GYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred -HHHhcCCCCccc--CcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 111122221110 111122 2334444444 588999998777778888888776541 345566
Q ss_pred EEcCC
Q 044700 287 VTTDD 291 (795)
Q Consensus 287 vTtR~ 291 (795)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 66653
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.92 E-value=0.0031 Score=62.66 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999998873 333456799999876 66655544
No 224
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.90 E-value=0.0025 Score=64.67 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
...++.|+|.+|+|||+||.+++-....... -..++|++....++..++.+ +++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHh
Confidence 5689999999999999999999743222221 35899999888777655433 34443
No 225
>PHA02244 ATPase-like protein
Probab=96.89 E-value=0.011 Score=62.44 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=29.1
Q ss_pred ceeecchh----HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 147 ETCGVDEE----KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 147 ~~vGr~~~----~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++|.... ...+..++... .-|.|+|.+|+|||+||+++++
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence 56665443 34455555443 3577899999999999999998
No 226
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.021 Score=60.60 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=64.0
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hHHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCc
Q 044700 251 RNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD-QSIADKIGST---ENIRRASDEASWSLFESAAFFNRSQ 326 (795)
Q Consensus 251 ~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~ 326 (795)
+++-++|+|++...+.+.++.+...+..-..++.+|++|.+ ..+.....+. +.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 45568889999888888999999998866677766655554 4444443332 8999999999998887641 11
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 327 EVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
. ...++..++|.|..+..+.
T Consensus 207 ---~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 ---D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1235677899997655444
No 227
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.87 E-value=0.0051 Score=65.07 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=65.0
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ce-eEEEEeCCC-CCHHHHHHHHHHHhcCCccc
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DI-RIWVGASAD-SDVLSVASSIAEALGASASA 230 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~ 230 (795)
-..++++.+.--. ...-+.|+|.+|+|||||++.+++ .+.... +. ++|+.+.+. ..+.++.+.+...+......
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3345777776433 446779999999999999999988 333322 43 467777654 56888999888877654421
Q ss_pred CCCCC-CCh-HHHHHHHHHhc-CCCeEEEEEeCC
Q 044700 231 FSSQG-QEL-EPYLRYIRKSI-ARNRFILVIDDV 261 (795)
Q Consensus 231 ~~~~~-~~~-~~~~~~l~~~l-~~~~~LlVlDdv 261 (795)
.+... ... .........+. ++++.+||+|++
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11000 001 11112222221 589999999998
No 228
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.87 E-value=0.011 Score=55.47 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe---------------------CCC----------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA---------------------SAD---------------- 210 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------------------s~~---------------- 210 (795)
....+.++|.+|.|||||.+.+|..++.. .+.+|+.- -+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 45689999999999999999999854321 23444421 011
Q ss_pred -----CCHHHHHHH---HHHHhcCCc--ccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCC-CC-CChhhHHHHHHhhcC
Q 044700 211 -----SDVLSVASS---IAEALGASA--SAFSSQGQELEPYLRYIRKSIARNRFILVIDDV-WI-EDNSTWESLLQTLQE 278 (795)
Q Consensus 211 -----~~~~~~~~~---i~~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv-w~-~~~~~~~~l~~~l~~ 278 (795)
....++.+. .++..+... ...+......++-.-.|.+.+-+++-+++-|.= -+ +....|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 111222222 333333221 122334455566666777788888889998852 11 222355554333333
Q ss_pred CCCCcEEEEEcCChHHHHhhCCc
Q 044700 279 GRPGSKILVTTDDQSIADKIGST 301 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~~~~~ 301 (795)
...|..|+++|-+..+...+...
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred hhcCcEEEEEeccHHHHHhccCc
Confidence 46799999999999988776544
No 229
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.029 Score=57.93 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=108.0
Q ss_pred ceeecchhHHHHHHHHhCCC-----------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 147 ETCGVDEEKEDLVSKLLSSS-----------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++=|-++.+++|.+.+.-+- +..+=|.+||++|.|||-||++|++ +.... |+.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At-----FIrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT-----FIRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce-----EEEeccH-----
Confidence 45588988888888764321 1567889999999999999999999 44333 3444433
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc-CCCeEEEEEeCCCCC-----------Ch---hhHHHHHHhhcCC-
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSI-ARNRFILVIDDVWIE-----------DN---STWESLLQTLQEG- 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdvw~~-----------~~---~~~~~l~~~l~~~- 279 (795)
++.+..-+... .+...+.+.- ...+.+|++|.+... +. -.+-+|...+..+
T Consensus 220 ---ElVqKYiGEGa----------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ---ELVQKYIGEGA----------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ---HHHHHHhccch----------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 22222222211 2233333333 356789999987311 11 1233344444444
Q ss_pred -CCCcEEEEEcCChHHHHhh--CCc-----ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc----
Q 044700 280 -RPGSKILVTTDDQSIADKI--GST-----ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP---- 347 (795)
Q Consensus 280 -~~gs~iivTtR~~~va~~~--~~~-----~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P---- 347 (795)
...-|||.+|-..++.... .+. ++++.-+.+.-.++|.-++-. ......-++ +.+++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdl 361 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADL 361 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHH
Confidence 3456888888766654321 211 777754555555666655421 111222223 35666666654
Q ss_pred hHHHHHhhhcC--CC----CHHHHHHHHhh
Q 044700 348 LLIKIVGRTLH--FK----TEKEWQSILDS 371 (795)
Q Consensus 348 Lai~~lg~~L~--~~----~~~~w~~~l~~ 371 (795)
-|+.+=|++++ .. +.+++.++.++
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 34445555542 21 66666666654
No 230
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0088 Score=60.25 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC------ceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-----CCCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF------DIRIWVGASADSDVLSVASSIAEALGASASAF-----SSQGQ 236 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 236 (795)
...++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. .+.+......... -....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 56899999999999999999987632 2222 567999988877765544 3333322211000 00223
Q ss_pred ChHHHHHHHHHhcC----CCeEEEEEeCC
Q 044700 237 ELEPYLRYIRKSIA----RNRFILVIDDV 261 (795)
Q Consensus 237 ~~~~~~~~l~~~l~----~~~~LlVlDdv 261 (795)
+.+++...+..... .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 44555555555442 34458888887
No 231
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.85 E-value=0.011 Score=58.28 Aligned_cols=134 Identities=21% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe----------------------CCCC------C-------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA----------------------SADS------D------- 212 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----------------------s~~~------~------- 212 (795)
....++|+|+.|+|||||...+..-.+ .-.+.+++.. .+.+ +
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 456999999999999999999875211 1112222211 1111 1
Q ss_pred -----------HHHHHHHHHHHhcCCccc---CCCCCCChHHHHHHHHHhcCCCeEEEEEeCC-CCCChhhHHHHHHhhc
Q 044700 213 -----------VLSVASSIAEALGASASA---FSSQGQELEPYLRYIRKSIARNRFILVIDDV-WIEDNSTWESLLQTLQ 277 (795)
Q Consensus 213 -----------~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv-w~~~~~~~~~l~~~l~ 277 (795)
..+....+++.++..... .+......++-.-.+.+.+-..+-+|+-|+= -.-|.+.-+.+...+.
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 123344555555544211 1123344445555677788888889999963 1122233333333333
Q ss_pred CC--CCCcEEEEEcCChHHHHhhCCcccC
Q 044700 278 EG--RPGSKILVTTDDQSIADKIGSTENI 304 (795)
Q Consensus 278 ~~--~~gs~iivTtR~~~va~~~~~~~~l 304 (795)
.. ..|..||+.|-+..+|..+...+.+
T Consensus 187 ~~~~~~g~tii~VTHd~~lA~~~dr~i~l 215 (226)
T COG1136 187 ELNKERGKTIIMVTHDPELAKYADRVIEL 215 (226)
T ss_pred HHHHhcCCEEEEEcCCHHHHHhCCEEEEE
Confidence 22 4588999999999999987665443
No 232
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.012 Score=63.36 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH--
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI-- 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-- 245 (795)
...-+.+.|++|+|||+||..++.+ ..|..+=-+ .+ +++ ...+.......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii---Sp---e~m-----------------iG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII---SP---EDM-----------------IGLSESAKCAHIKK 589 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe---Ch---HHc-----------------cCccHHHHHHHHHH
Confidence 6677889999999999999999873 456533222 11 111 111222223333
Q ss_pred --HHhcCCCeEEEEEeCCCCCChhhHHH---------------HHHhhcCCCCCcEEEEEcCChHHHHhhCCc------c
Q 044700 246 --RKSIARNRFILVIDDVWIEDNSTWES---------------LLQTLQEGRPGSKILVTTDDQSIADKIGST------E 302 (795)
Q Consensus 246 --~~~l~~~~~LlVlDdvw~~~~~~~~~---------------l~~~l~~~~~gs~iivTtR~~~va~~~~~~------~ 302 (795)
.+.-+..--.||+||+ +..-+|-. +....|+.+..--|+-||....+...|+-. +
T Consensus 590 ~F~DAYkS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i 667 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTI 667 (744)
T ss_pred HHHHhhcCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhee
Confidence 3344556679999998 22222322 222223333333455577778888877632 8
Q ss_pred cCCCCCh-HhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHc
Q 044700 303 NIRRASD-EASWSLFESAAFFNRSQEVREHLEHIGRKIVQQC 343 (795)
Q Consensus 303 ~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c 343 (795)
.++.++. ++..+.++..- .-.++..+.++++...+|
T Consensus 668 ~Vpnl~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 668 HVPNLTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ecCccCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 9999987 77777776643 112234456666666666
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.85 E-value=0.0028 Score=55.26 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 044700 172 ISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (795)
|-|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.84 E-value=0.0019 Score=59.45 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=64.0
Q ss_pred eecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch-hccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044700 149 CGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV-MRYFDIRIWVGASADSDVLSVASSIAEALGAS 227 (795)
Q Consensus 149 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 227 (795)
||....++++.+.+..-......|.|+|..|+||+++|+.++..... ...|.. +++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~------------------ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS------------------ 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh------------------
Confidence 57777788888777654335577899999999999999999874321 112211 00110
Q ss_pred cccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcCCh
Q 044700 228 ASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-RPGSKILVTTDDQ 292 (795)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 292 (795)
.. .+.+.. . +.--++++|+..-+.+....+...+... ....|+|.||+..
T Consensus 60 --------~~----~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------LP----AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------TC----HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------Cc----HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111112 1 3335778998666666666676666533 5678999998744
No 235
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00056 Score=67.28 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=42.7
Q ss_pred cCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCC--CCCCccchhhccCcccceeecCCccccc
Q 044700 575 IGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWC--TNLETLPQGMGKLINLEHLLNVGTSLAS 640 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~~l~~ 640 (795)
.-.+..|++|++.+..++.+- .+-.|++|+.|.++.| +....++....++++|++|++++|++..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 344556666666666655432 2336788888888877 4444555555667888888888887653
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.81 E-value=0.0054 Score=73.06 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=90.4
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+... -...+-|.++|++|+||||||+.+++ .....| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE-----EEEecH----
Confidence 46889999999988876421 01346788999999999999999998 332222 222211
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCC-CCC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-----------NSTWESLLQTLQEG-RPG 282 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~-~~g 282 (795)
++. ... .......+...+.......+.+|++|++.... ......+...+... ..+
T Consensus 247 ~i~----~~~---------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 EIM----SKY---------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred HHh----ccc---------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 110 000 01111223333334445567899999973210 01122233333222 233
Q ss_pred cEEEE-EcCChH-HHHhhC------CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 283 SKILV-TTDDQS-IADKIG------STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 283 s~iiv-TtR~~~-va~~~~------~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
..+++ ||.... +...+. ..+.+...+.++-.+++....-. ..... ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~----d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAE----DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcc----ccCHHHHHHhCCCCC
Confidence 34444 444332 211111 12677777888888888754311 11010 112456777777764
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.81 E-value=0.039 Score=61.87 Aligned_cols=164 Identities=16% Similarity=0.157 Sum_probs=100.5
Q ss_pred CceeecchhHHHHHHHHhC---CCCCCcEEEEEcCCCChHHHHHHHHhcCcc------hhccCceeEEEEeCCCCCHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---SSTEIPIISILGTEGTGKTTLATLAYNSYK------VMRYFDIRIWVGASADSDVLSV 216 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~ 216 (795)
..+=+|+.+..+|...+.. ++...+.+.|.|.+|.|||..+..|.+..+ -...|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4566899999999988754 222456999999999999999999998432 112343 345555555678999
Q ss_pred HHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc-----CCCeEEEEEeCC---CCCChhhHHHHHHhhcC-CCCCcEEEE
Q 044700 217 ASSIAEALGASASAFSSQGQELEPYLRYIRKSI-----ARNRFILVIDDV---WIEDNSTWESLLQTLQE-GRPGSKILV 287 (795)
Q Consensus 217 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv---w~~~~~~~~~l~~~l~~-~~~gs~iiv 287 (795)
...|.+++.+.... .. .....+..+. ..+.+++++|++ |... -+-+...|.| ..++||++|
T Consensus 475 Y~~I~~~lsg~~~~---~~----~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WD----AALEALNFRFTVPKPKRSTTVVLIDELDILVTRS---QDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHhcccCccc---HH----HHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc---HHHHHHHhcCCcCCCCceEE
Confidence 99999999887542 22 2233333333 245688888886 3222 2334455555 367888776
Q ss_pred EcCCh-----------HHHHhhCCc-ccCCCCChHhHHHHHHHHh
Q 044700 288 TTDDQ-----------SIADKIGST-ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 288 TtR~~-----------~va~~~~~~-~~l~~L~~~~~~~Lf~~~a 320 (795)
-+=.. .|+..++-+ +...+-++++--++...+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 54111 111222222 5555666666655555443
No 238
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.79 E-value=0.017 Score=55.89 Aligned_cols=127 Identities=22% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeC--CCCCHHHHHHH------HHHHhcCCcc--cCCCCCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGAS--ADSDVLSVASS------IAEALGASAS--AFSSQGQE 237 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~~~~------i~~~l~~~~~--~~~~~~~~ 237 (795)
...+++|+|..|+|||||++.++... ....+.+++.-. ...+....... +++.++.... ........
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 45799999999999999999999732 234455554311 11222222221 3444443211 00001222
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CC-CcEEEEEcCChHHHHh
Q 044700 238 LEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-RP-GSKILVTTDDQSIADK 297 (795)
Q Consensus 238 ~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~va~~ 297 (795)
.+...-.+-+.+-..+-++++|+--. -+....+.+...+... .. |..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 23333345566667788999998532 2333444444444322 22 6788888887766543
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.77 E-value=0.0066 Score=57.65 Aligned_cols=133 Identities=20% Similarity=0.137 Sum_probs=67.9
Q ss_pred eeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044700 148 TCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGAS 227 (795)
Q Consensus 148 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 227 (795)
+||....+.++.+.+..-.....-|.|+|..|+||+.+|+.+++... ..-..-+-|+++. .+.+.+- .++.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e----~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLE----SELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHH----HHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhh----hhhhcc
Confidence 47888888888888766444446777999999999999999998321 1111223444442 2333222 233222
Q ss_pred cccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC------C-----CCcEEEEEcCCh
Q 044700 228 ASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG------R-----PGSKILVTTDDQ 292 (795)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~~ 292 (795)
......+.... ....+... ..=-|+||+|.......-..|...+..+ + ...|||.||...
T Consensus 74 ~~~~~~~~~~~--~~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccc--cCCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11000011110 01223322 2226889999766555555555555422 1 256888888643
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0056 Score=58.97 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG 206 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 206 (795)
...+|.+.|+.|+||||+|+.+++ +....+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 457999999999999999999998 5555565666653
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.76 E-value=0.014 Score=69.52 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=84.4
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.+..+++|.+.+.-. -...+-|.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 56889888888887766421 013456889999999999999999983 33333 222211
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC--------Ch----hhHHHHHHhhcC--CC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE--------DN----STWESLLQTLQE--GR 280 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~--------~~----~~~~~l~~~l~~--~~ 280 (795)
+ ++... .......+...+...-...+.+|++|++..- .. .....+...+.. ..
T Consensus 522 ~----l~~~~---------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 E----ILSKW---------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred H----Hhhcc---------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1 11111 1111222333333344567799999997321 00 112223333332 22
Q ss_pred CCcEEEEEcCChHHHHh--h-----CCcccCCCCChHhHHHHHHHHh
Q 044700 281 PGSKILVTTDDQSIADK--I-----GSTENIRRASDEASWSLFESAA 320 (795)
Q Consensus 281 ~gs~iivTtR~~~va~~--~-----~~~~~l~~L~~~~~~~Lf~~~a 320 (795)
.+.-||.||...+.... . ...+.++..+.++-.++|....
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 34456667755543321 1 1127888888888888887654
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.001 Score=69.96 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=41.2
Q ss_pred CceeecchhHHHHHHHHhCCC----CCCcEEEEEcCCCChHHHHHHHHhcCc
Q 044700 146 SETCGVDEEKEDLVSKLLSSS----TEIPIISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
.+++|.++.++++++++.... ...+++.++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999997632 256899999999999999999999843
No 243
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.017 Score=66.20 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=101.4
Q ss_pred CceeecchhHH---HHHHHHhCCCC-------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKE---DLVSKLLSSST-------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~---~l~~~L~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.++.|-++.++ +++..|..+.. -++=+.++|++|.|||-||++++-... +-|+++|...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE---- 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE---- 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH----
Confidence 46788876555 45555655432 356788999999999999999998433 3345555431
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC---------------ChhhHHHHHHhhcCCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE---------------DNSTWESLLQTLQEGR 280 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~---------------~~~~~~~l~~~l~~~~ 280 (795)
.++.+.+.. ...+.+.....-...+++|.+|++... ....++++...+..+.
T Consensus 380 ----FvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 380 ----FVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 112221111 111222333333457788888876211 1123455555555444
Q ss_pred CCc--EEEEEcCChHHHHhh--CC-----cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 281 PGS--KILVTTDDQSIADKI--GS-----TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 281 ~gs--~iivTtR~~~va~~~--~~-----~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
.++ -++-+|...++.... .. .+.++.-+.....++|.-++-.-.. ..+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 333 334466656654321 11 1777777888888999888743222 133445566 888888877443
No 244
>PTZ00494 tuzin-like protein; Provisional
Probab=96.72 E-value=0.26 Score=52.76 Aligned_cols=162 Identities=16% Similarity=0.135 Sum_probs=102.9
Q ss_pred CceeecchhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
..+|.|+.+-..+.+.|.+-+. ..+++.+.|.-|.||++|.+.....+.+ ..++|+|....| .++.|.+.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHHHHHHHh
Confidence 6899999998888888877554 7899999999999999999998875433 467888887654 578888888
Q ss_pred cCCcccCCCCCCC-hH---HHHHHHHHhcCCCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhC
Q 044700 225 GASASAFSSQGQE-LE---PYLRYIRKSIARNRFILVIDDVWIED-NSTWESLLQTLQEGRPGSKILVTTDDQSIADKIG 299 (795)
Q Consensus 225 ~~~~~~~~~~~~~-~~---~~~~~l~~~l~~~~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~ 299 (795)
+.+..+ .-.+ ++ +.....+....++.-+||+-=-.-.+ .-.+.+.. .+.....-+.|++---.+.+.....
T Consensus 443 gV~nve---~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 443 GVSNVE---VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred CCCChh---hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhc
Confidence 876532 1112 22 22222333356677777774210011 11222222 2333445677887654444322211
Q ss_pred --Cc---ccCCCCChHhHHHHHHHH
Q 044700 300 --ST---ENIRRASDEASWSLFESA 319 (795)
Q Consensus 300 --~~---~~l~~L~~~~~~~Lf~~~ 319 (795)
+. |-+++++.++|.+.-.+.
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhcc
Confidence 11 889999999998877654
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0057 Score=62.34 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
...-+.++|.+|+|||.||.++.+. +...=-.+.+++ ..+++.++........ ....+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~~------------~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEGR------------LEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcCc------------hHHHHHH
Confidence 4567899999999999999999994 442222455664 4466666666554311 1122222
Q ss_pred hcCCCeEEEEEeCCCCCChhhHH
Q 044700 248 SIARNRFILVIDDVWIEDNSTWE 270 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~~~~~ 270 (795)
.+. +-=||||||+.......|.
T Consensus 164 ~l~-~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 164 ELK-KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred Hhh-cCCEEEEecccCccCCHHH
Confidence 222 2348999999665545554
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.71 E-value=0.012 Score=57.11 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=71.2
Q ss_pred CceeecchhHHHHHHHHh---CCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
..++|.+..++.+++-.. .+- .-.-|.+||.-|.|||.|++++.+ ++....-. -|.|...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH------------
Confidence 579999998888876432 221 456788999999999999999998 44444322 2222221
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC---CCCcEEEEEcCCh
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG---RPGSKILVTTDDQ 292 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs~iivTtR~~ 292 (795)
+..++-.+...|+. ..+||+|+.||..- ++......+...+..+ .+.-.++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11112222222222 46899999999854 3445777788877654 2333444444433
No 247
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.68 E-value=0.04 Score=58.60 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=36.2
Q ss_pred eeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 148 TCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 148 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467788888888777665445567899999999999999999863
No 248
>PRK04132 replication factor C small subunit; Provisional
Probab=96.68 E-value=0.041 Score=64.91 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=94.5
Q ss_pred CCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEE
Q 044700 177 TEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFI 255 (795)
Q Consensus 177 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L 255 (795)
+.++||||+|..++++. ....+ ...+-++.|....+. ..+++++.+....+ . -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~----~--------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP----I--------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC----c--------------CCCCCEE
Confidence 66889999999999842 11222 245667777654444 34444444332111 0 0124579
Q ss_pred EEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhh
Q 044700 256 LVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREH 331 (795)
Q Consensus 256 lVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~ 331 (795)
+|+|++...+..+.+.|...+..-....++|++|.+. .+.....+. +.+++++.++....+...+...+-..
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---- 709 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---- 709 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----
Confidence 9999998877778888888887655566666655443 444333332 99999999999888876653222111
Q ss_pred HHHHHHHHHHHcCCCchHH
Q 044700 332 LEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 332 ~~~~~~~i~~~c~G~PLai 350 (795)
-.+....|++.++|.+..+
T Consensus 710 ~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 1346788999999988543
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0011 Score=59.26 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 250
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.67 E-value=0.0057 Score=62.22 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCC-HHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSD-VLSVASSIAE 222 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~ 222 (795)
.-+-++|+|.+|+||||||+.+++ .++.+| +.++++-+.+... +.++.+.+.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 557899999999999999999999 555566 4666777776654 4555555544
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.0047 Score=58.40 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
++.|+|.+|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4789999999999999999873 333335678888766544
No 252
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.65 E-value=0.039 Score=63.31 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=76.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|....+.++.+.+..-......|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+. ..+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~---~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLE---SELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHH---HHHc
Confidence 6899999999999988876544456778999999999999999997422 1111234455543321 2222 1222
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
+........... .....+. ....-.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 269 g~~~~~~~~~~~--~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 269 GHEKGAFTGAIA--QRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred CCCCCccCCCCc--CCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 211100000000 0000010 1223468899997766666777777665431 125788877543
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.024 Score=59.97 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhCCc---ccCCCCChHhHHHHHHHH
Q 044700 251 RNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIGST---ENIRRASDEASWSLFESA 319 (795)
Q Consensus 251 ~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~---~~l~~L~~~~~~~Lf~~~ 319 (795)
+++-++|+|++...+...-..+...+.....+..+|++|.+.. +....... +.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688876666677777777765445666777776654 44333333 899999999998877653
No 254
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0099 Score=69.84 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=70.8
Q ss_pred CceeecchhHHHHHHHHhCC-------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|-++.++.|...+... ......+.++|+.|+|||++|+.++.. ... ..+.++++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----
Confidence 46899999999999988732 113567899999999999999999873 322 23445544322111
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcC-CCeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIA-RNRFILVIDDVWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdvw~~~~~~~~~l~~~l~~~ 279 (795)
.+.+-++.+... ...+. ...+.+.+. ....+|+||++...+.+.++.+...+..+
T Consensus 529 ~~~~LiG~~~gy---vg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 529 TVSRLIGAPPGY---VGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred cHHHHcCCCCCc---ccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 122222322111 01111 112233333 33469999999777777778887776543
No 255
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.63 E-value=0.094 Score=56.24 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=125.0
Q ss_pred cchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHH-HHHhcCcchhccCceeEEEEeCC---CCCHHHHHHHHHHHhcC
Q 044700 151 VDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLA-TLAYNSYKVMRYFDIRIWVGASA---DSDVLSVASSIAEALGA 226 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~ 226 (795)
|.+.+++|..||... .-..|.|.|+-|+||+.|+ .++.++.+ .++.++|.+ .-+-..++..++.+++.
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 567889999999998 5579999999999999999 77776422 267777643 22344555555555553
Q ss_pred Cc-----------------------ccCCCCCCChHHHHHHHH-------H-------------------hc---CCCeE
Q 044700 227 SA-----------------------SAFSSQGQELEPYLRYIR-------K-------------------SI---ARNRF 254 (795)
Q Consensus 227 ~~-----------------------~~~~~~~~~~~~~~~~l~-------~-------------------~l---~~~~~ 254 (795)
-. ..+ ......++.+.+. + ++ ..++-
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGf--Ses~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~P 150 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGF--SESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRP 150 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCC
Confidence 21 110 1111122222111 1 01 11367
Q ss_pred EEEEeCCCCCCh---------hhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhC----Cc----ccCCCCChHhHHHHHH
Q 044700 255 ILVIDDVWIEDN---------STWESLLQTLQEGRPGSKILVTTDDQSIADKIG----ST----ENIRRASDEASWSLFE 317 (795)
Q Consensus 255 LlVlDdvw~~~~---------~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~----~~----~~l~~L~~~~~~~Lf~ 317 (795)
+||+|+.-.... .+|.... - ..+=.+||+.|-+........ .. +.+.-.+.+.|..+..
T Consensus 151 VVVIdnF~~k~~~~~~iy~~laeWAa~L---v-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 151 VVVIDNFLHKAEENDFIYDKLAEWAASL---V-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred EEEEcchhccCcccchHHHHHHHHHHHH---H-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 999999743221 2333221 1 134568999888776654332 22 7889999999999988
Q ss_pred HHhhcCCCc------------hh----hhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC--CHHHHHHHHhh
Q 044700 318 SAAFFNRSQ------------EV----REHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK--TEKEWQSILDS 371 (795)
Q Consensus 318 ~~a~~~~~~------------~~----~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~--~~~~w~~~l~~ 371 (795)
.+.-..... .. ......-....++..||=-.-+..+++.++.. ....-.++.++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 876332100 00 01233445567788999999999999999876 34445555543
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=62.97 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=62.1
Q ss_pred CceeecchhHHHHHHHHhCCC--C--------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS--T--------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~--~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.++=|.++.+.++..++..-. + ..+=|.++|++|.|||.||+++++.. .-. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 466789988888877765421 1 56778899999999999999999943 223 3444433
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVW 262 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw 262 (795)
+|+..+ .....+.+...+.+.-+.-++++++|++.
T Consensus 258 ---eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222 22233445555556667789999999983
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.62 E-value=0.0047 Score=60.26 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeC-CCCCHHHHHHHHHHHhcCCcccCCCCCCChHH-HHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGAS-ADSDVLSVASSIAEALGASASAFSSQGQELEP-YLRYIR 246 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~ 246 (795)
++||.++|+.|+||||.+-+++... ...=..+..++.. ......+-++..++.++.+..... ...+..+ ..+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~-~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR-TESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS-TTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhh-cchhhHHHHHHHHH
Confidence 3799999999999999888887733 3333345666653 233456677778888876533111 1122222 223333
Q ss_pred HhcCCCeEEEEEeCC
Q 044700 247 KSIARNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~~~~LlVlDdv 261 (795)
..-..+.=+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 332233347777765
No 258
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.61 E-value=0.0096 Score=58.31 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
+-+++.|.|.+|.||||+++.+... .... ...+.+......-. ..+.+..+.... . +...+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa----~~L~~~~~~~a~-------T---i~~~l~~ 79 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAA----KELREKTGIEAQ-------T---IHSFLYR 79 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHH----HHHHHHHTS-EE-------E---HHHHTTE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHH----HHHHHhhCcchh-------h---HHHHHhc
Confidence 4478999999999999999998873 2222 22333333322222 223333332211 0 0111111
Q ss_pred hc---------CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc
Q 044700 248 SI---------ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTT 289 (795)
Q Consensus 248 ~l---------~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 289 (795)
.. ..++-+||+|+.+-.+...+..+...... .|+|+|+.=
T Consensus 80 ~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 80 IPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp ECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred CCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 00 12334999999976666677777776654 577887654
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.61 E-value=0.018 Score=55.18 Aligned_cols=120 Identities=13% Similarity=0.212 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc-ch--hcc---Cc--eeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC---CCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSY-KV--MRY---FD--IRIWVGASADSDVLSVASSIAEALGASASAFS---SQGQ 236 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~---~~~~ 236 (795)
...+++|+|+.|+|||||.+.+..+. ++ ... |. .+.|+ .+ .+.++.++....... ....
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45799999999999999999986321 11 111 10 12332 21 345566654321010 0111
Q ss_pred ChHHHHHHHHHhcCCC--eEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChHHHHh
Q 044700 237 ELEPYLRYIRKSIARN--RFILVIDDVWI-EDNSTWESLLQTLQEG-RPGSKILVTTDDQSIADK 297 (795)
Q Consensus 237 ~~~~~~~~l~~~l~~~--~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~va~~ 297 (795)
......-.+.+.+..+ +-++++|+--. -+....+.+...+... ..|..||++|.+.+....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 1222233344555556 77888898522 2333344444443321 246778888888876543
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.61 E-value=0.0069 Score=63.40 Aligned_cols=87 Identities=28% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
..+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++...... .....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5689999999999999999998863 33344578899988877753 234444321110 013344566666666
Q ss_pred HhcC-CCeEEEEEeCC
Q 044700 247 KSIA-RNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdv 261 (795)
..+. +..-+||+|.|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5554 45668999987
No 261
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.018 Score=64.11 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=81.7
Q ss_pred CceeecchhHHHHHHHHhCCC-----------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS-----------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++=|.++-+.+|.+.+.-.- ...+-|..+|++|.|||++|+++++ +-...| +.+..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence 456678777777766554321 1578899999999999999999999 444444 333322
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCCCCCc
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-----------NSTWESLLQTLQEGRPGS 283 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~~~gs 283 (795)
+++... .......+...+.+.-+--+++|+||.+..-. .-.+..+...+.......
T Consensus 503 ----EL~sk~---------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 ----ELFSKY---------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred ----HHHHHh---------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 111111 11222333344444444566888888762110 011222333333322232
Q ss_pred EEEE---EcCChHHHHh-hCC--c---ccCCCCChHhHHHHHHHHhh
Q 044700 284 KILV---TTDDQSIADK-IGS--T---ENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 284 ~iiv---TtR~~~va~~-~~~--~---~~l~~L~~~~~~~Lf~~~a~ 321 (795)
.|+| |-|...+-.. +.+ . +.++.-+.+.-.++|+.++-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 3332 3343333222 221 1 66666667777888988873
No 262
>PHA00729 NTP-binding motif containing protein
Probab=96.59 E-value=0.0068 Score=59.67 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.4
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++..+... +...|.|+|.+|+||||||..+.+
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 44444444 456789999999999999999988
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.56 E-value=0.009 Score=59.78 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
...++.|+|.+|+||||+|.+++. .....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 568999999999999999999987 3333334678887665554
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.55 E-value=0.0029 Score=58.28 Aligned_cols=89 Identities=29% Similarity=0.349 Sum_probs=50.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCC
Q 044700 172 ISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIAR 251 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 251 (795)
|.++|.+|+|||+||+.+++ ... ....-+.++...+..++....--. ..... + ..... ...+ .
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~-~--~~~~l---~~a~-----~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIGSYDPS-NGQFE-F--KDGPL---VRAM-----R 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHCEEET--TTTTC-E--EE-CC---CTTH-----H
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEeccccccccceeeeeec-ccccc-c--ccccc---cccc-----c
Confidence 67999999999999999998 331 133456777777777665432211 00000 0 00000 0000 1
Q ss_pred CeEEEEEeCCCCCChhhHHHHHHhhc
Q 044700 252 NRFILVIDDVWIEDNSTWESLLQTLQ 277 (795)
Q Consensus 252 ~~~LlVlDdvw~~~~~~~~~l~~~l~ 277 (795)
+..++|||++...+.+.+..+...+.
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHS
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHh
Confidence 78999999997655555666655554
No 265
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00027 Score=80.28 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=21.9
Q ss_pred cceeeecCCccccccccccccc-ccccceeeecCCCCCcC
Q 044700 740 LKSLKFVNMEEWGDWECEMANV-MPCLCSLSFVYCPELKA 778 (795)
Q Consensus 740 L~~L~l~~~~~l~~~~~~~~~~-~p~L~~L~l~~C~~L~~ 778 (795)
|+.|.+..+.....-....... +.++..+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 6777777765544332221111 56677777777765553
No 266
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.54 E-value=0.026 Score=52.26 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
...+++|+|..|.|||||++.+..... ...+.+|++-.. .+..-. .....+...-.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-----~lS~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-----QLSGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-----cCCHHHHHHHHHHH
Confidence 457999999999999999999987432 234444442100 000000 01111222333455
Q ss_pred hcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh
Q 044700 248 SIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK 297 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~ 297 (795)
.+..++-++++|+--. -+......+...+... +..||++|.+.+.+..
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 5666777899998532 2334445555555433 3468888877765544
No 267
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.53 E-value=0.079 Score=62.76 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=76.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++... ..-...+.+++..-. . ..+.. .+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~-~~~~~---~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-A-GLLES---DLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-h-hHhhh---hhc
Confidence 4799999999998877765433556889999999999999999997432 111234555555432 1 22211 111
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
+...... ... .......+. ....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~-~g~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAF-TGA-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccc-ccc-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111000 000 011111221 1223469999997766666666766664321 345888888544
No 268
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.50 E-value=0.014 Score=62.05 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=75.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.... ..-...+.|++..-. ...+...+. +
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lf---g 79 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF---G 79 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHc---c
Confidence 5789999999999988876544556788999999999999999986221 111123455555422 222222221 1
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
....... ... ......+.. ...=.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 80 ~~~~~~~-g~~--~~~~g~l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFT-GAQ--KRHPGRFER---ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccC-Ccc--cccCCchhc---cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1100000 000 000111211 122358899997666666677766664421 135888877543
No 269
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.0093 Score=62.94 Aligned_cols=87 Identities=26% Similarity=0.279 Sum_probs=58.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
..+++-|+|++|+||||||.+++.. ....-..++||+....+++. .+++++...... .......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5689999999999999999998863 33344678999998887763 344444332110 012334566666666
Q ss_pred HhcC-CCeEEEEEeCC
Q 044700 247 KSIA-RNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdv 261 (795)
..++ +..-+||+|.|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5554 45669999987
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.49 E-value=0.02 Score=57.36 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC-----CCCHHHHHHHHHHHhcCCcccC---CCCCCChH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA-----DSDVLSVASSIAEALGASASAF---SSQGQELE 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~ 239 (795)
...+++|||..|+||||+++.+..=. ..-++.+++.-.. .....+...++++..+...... +.......
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 55799999999999999999999732 2223444443211 2223344556666666443211 11222222
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCC-C---hhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCCc
Q 044700 240 PYLRYIRKSIARNRFILVIDDVWIE-D---NSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGST 301 (795)
Q Consensus 240 ~~~~~l~~~l~~~~~LlVlDdvw~~-~---~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~ 301 (795)
.-.-.+.+.+.-++-++|.|.--+. + +.+.-.+...+. ...|-..+..|-+-.++..+...
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhccc
Confidence 2234566778889999999985322 1 122222333332 24567788888888888877654
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.47 E-value=0.011 Score=56.17 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC--CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA--DSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
...+++|+|..|+|||||.+.++... ....+.+++.-.. ..+..+.. ...++... .....+...-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-----qLS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY-----QLSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE-----ecCHHHHHHHHH
Confidence 45799999999999999999999742 2344555553211 11111111 11111100 122222333445
Q ss_pred HHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChHHHHh
Q 044700 246 RKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-RPGSKILVTTDDQSIADK 297 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~va~~ 297 (795)
.+.+-.++-++++|+--. -+......+...+... ..|..||++|.+......
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 556667788899998532 2333444444444322 346778888888765443
No 272
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.45 E-value=0.017 Score=64.44 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=79.1
Q ss_pred CceeecchhHHHHHHHHhC--------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS--------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 217 (795)
+++.|.+..++.+...... +-...+-|.++|++|.|||.+|+.+++. ....| +-++.+. +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hc
Confidence 4677877666655543211 1114567899999999999999999983 22222 1222111 10
Q ss_pred HHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC--------ChhhH----HHHHHhhcCCCCCcEE
Q 044700 218 SSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE--------DNSTW----ESLLQTLQEGRPGSKI 285 (795)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~--------~~~~~----~~l~~~l~~~~~gs~i 285 (795)
... .......+...+...-...+++|++|++... +...- ..+...+.....+.-|
T Consensus 297 --------~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 297 --------GGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred --------ccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 000 0111122223333333457899999998321 00011 1122222223334445
Q ss_pred EEEcCChHHH-Hhh------CCcccCCCCChHhHHHHHHHHhh
Q 044700 286 LVTTDDQSIA-DKI------GSTENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 286 ivTtR~~~va-~~~------~~~~~l~~L~~~~~~~Lf~~~a~ 321 (795)
|.||.+..-. ..+ ...+.++.-+.++-.++|..+..
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 6677555321 111 11277888888888899987763
No 273
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.45 E-value=0.031 Score=53.90 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc--C---------CCCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA--F---------SSQGQ 236 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~---------~~~~~ 236 (795)
...+++|+|..|+|||||++.++.-.. ...+.+++.-. ++......+...++.-... . .....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 457999999999999999999997422 12333443211 1111111111111110000 0 00111
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh
Q 044700 237 ELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQEGRPGSKILVTTDDQSIADK 297 (795)
Q Consensus 237 ~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~ 297 (795)
..+...-.+-+.+-.++-++++|+.... +....+.+...+.....+..||++|.+......
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 1222233445556677789999986332 223333344444332346778888887776543
No 274
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.44 E-value=0.01 Score=62.04 Aligned_cols=87 Identities=29% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
..+++-|+|.+|+||||||.+++.. ....-..++||+..+.++.. .+++++...... .......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 6689999999999999999988773 33334568899888776653 344444332110 013345566666665
Q ss_pred HhcC-CCeEEEEEeCC
Q 044700 247 KSIA-RNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdv 261 (795)
..++ +..-+||+|.|
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5553 45679999987
No 275
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.44 E-value=0.031 Score=53.16 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEE-------EeCCCCC--HHHHHHHHHHHhcCCcccCCCCCCCh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWV-------GASADSD--VLSVASSIAEALGASASAFSSQGQEL 238 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~ 238 (795)
...+++|+|..|.|||||++.+...... ..+.+++ .+.+... ...+...+.-. ... .....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~----~LS~G 95 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD----VLSGG 95 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC----CCCHH
Confidence 4579999999999999999999974321 1222222 1222221 11222222210 111 22233
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChHHHH
Q 044700 239 EPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDDQSIAD 296 (795)
Q Consensus 239 ~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~ 296 (795)
+...-.+.+.+-.++-++++|+--. -+......+...+... +..||++|.+.....
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3334445556666777889997522 2233344444444332 456888887776554
No 276
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.43 E-value=0.0058 Score=62.46 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...+.=|+|.+|+|||.|+.+++-+..+... =..++||+-...|+++++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 5689999999999999999887653332221 2368999999999988775 4666543
No 277
>PRK06696 uridine kinase; Validated
Probab=96.42 E-value=0.0031 Score=63.28 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHhCC-CCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 151 VDEEKEDLVSKLLSS-STEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 151 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
|.+-+++|.+.+... .....+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 566777888887652 22678999999999999999999998
No 278
>PRK13695 putative NTPase; Provisional
Probab=96.37 E-value=0.0041 Score=59.76 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 279
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.022 Score=61.56 Aligned_cols=126 Identities=24% Similarity=0.269 Sum_probs=72.3
Q ss_pred Cceeecch---hHHHHHHHHhCCCC-------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDE---EKEDLVSKLLSSST-------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~---~~~~l~~~L~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
+++-|-|+ |+++|+++|.++.. -.+=|.++|++|.|||-||++|+-...+ .| |...+..|+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--PF----F~~sGSEFdEm- 376 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--PF----FYASGSEFDEM- 376 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--Ce----Eeccccchhhh-
Confidence 46678775 56677888877653 3577889999999999999999985432 22 33333333311
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCCC--CC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-----------NSTWESLLQTLQEGR--PG 282 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~~--~g 282 (795)
. .......+.+.+...-+.-+++|++|.+.... .+.++++...+..+. .|
T Consensus 377 -----~------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 377 -----F------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred -----h------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 0 11111223333444445678999999873210 123445555555554 34
Q ss_pred cEEEEEcCChHHH
Q 044700 283 SKILVTTDDQSIA 295 (795)
Q Consensus 283 s~iivTtR~~~va 295 (795)
--||-.|-.++..
T Consensus 440 iIvigATNfpe~L 452 (752)
T KOG0734|consen 440 IIVIGATNFPEAL 452 (752)
T ss_pred eEEEeccCChhhh
Confidence 4444445444443
No 280
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.055 Score=60.63 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=54.4
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC--CHHHHHHHHHHHh
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS--DVLSVASSIAEAL 224 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l 224 (795)
+|+--...+++..+.....--...-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++.+.
T Consensus 409 d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~--- 484 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN--- 484 (952)
T ss_pred ceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH---
Confidence 343333333333333333322567899999999999999999999543 3444456677666431 2222222221
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCC
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 261 (795)
..+...+...+-+|||||+
T Consensus 485 ------------------~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 485 ------------------NVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred ------------------HHHHHHHhhCCcEEEEcch
Confidence 1222344567889999997
No 281
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.32 E-value=0.0077 Score=59.14 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=59.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
.+|.|+|+.|+||||++..+.. .........+++- ..+. +...... ..+-.. .. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~--E~~~~~~-~~~i~q-~~---vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPI--EFVHESK-RSLINQ-RE---VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCc--cccccCc-cceeee-cc---cCCCccCHHHHHHHHh
Confidence 5799999999999999998877 3333333344432 2211 1000000 000000 00 1112234556677777
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHH
Q 044700 250 ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIA 295 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (795)
...+=.|++|++.+ .+.+....... ..|-.++.|+-..++.
T Consensus 72 r~~pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 77788999999953 33444433322 3455677777555444
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.32 E-value=0.0035 Score=69.34 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=40.0
Q ss_pred CceeecchhHHHHHHHHh----CCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLL----SSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|.++.+++|++.|. .-....+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 468999999999999992 2233678999999999999999999998
No 283
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.06 Score=57.35 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC--HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD--VLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
..++|+++|.+|+||||++..++.. ....=..+..++.. .+. ..+-++..++.++.+.. ...+..++.+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~----v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI----AVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE----ecCCHHHHHHHH
Confidence 4589999999999999999999873 22221134444432 232 22223333333332221 123445555555
Q ss_pred HHhcCC-CeEEEEEeCCCCC--ChhhHHHHHHhhcCCCCCcEEEE
Q 044700 246 RKSIAR-NRFILVIDDVWIE--DNSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 246 ~~~l~~-~~~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iiv 287 (795)
...-.. +.=+|++|-.-.. +.....++...+....+-..++|
T Consensus 313 ~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred HHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 443221 2347778876432 22345555555543333333343
No 284
>PRK14974 cell division protein FtsY; Provisional
Probab=96.30 E-value=0.035 Score=58.70 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC--HHHHHHHHHHHhcCCcccCCCCCCChHH-HHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD--VLSVASSIAEALGASASAFSSQGQELEP-YLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~ 244 (795)
+..+|.++|++|+||||++..++.... ...+ .++.+. ...+. ..+-++..+..++....... ...+... ..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~-~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHK-YGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceeccc-CCCCHHHHHHHH
Confidence 468999999999999998888876322 1223 233443 23332 23344556666654332111 1122222 2233
Q ss_pred HHHhcCCCeEEEEEeCCCCC--ChhhHHHHHHhhcCCCCCcEEEE
Q 044700 245 IRKSIARNRFILVIDDVWIE--DNSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iiv 287 (795)
+........-+|++|-.-.. +...+.++........+...++|
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 33322222338889987443 23445555444332233334444
No 285
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.023 Score=58.04 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHH-hcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEA-LGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
..+++=|+|+.|+||||+|.+++-. ....-..++|++.-..++++.+.. ++.. +..-.-..+.......++.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 6789999999999999999998873 334445899999999999876643 3333 22111110012222233444444
Q ss_pred HhcCCCeEEEEEeCC
Q 044700 247 KSIARNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~~~~LlVlDdv 261 (795)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 444444569999988
No 286
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.28 E-value=0.024 Score=52.73 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC---CCCHHHHHHHHHHHhcC---C-cccCCCCC-----CC
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA---DSDVLSVASSIAEALGA---S-ASAFSSQG-----QE 237 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~---~-~~~~~~~~-----~~ 237 (795)
..|-|++..|.||||+|...+- +...+=-.+.++-+-+ ......+++.+- .+.. . ...+.... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999987765 3222222344443322 233333433330 0000 0 00000000 01
Q ss_pred hHHHHHHHHHhcCC-CeEEEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCChH
Q 044700 238 LEPYLRYIRKSIAR-NRFILVIDDVWI---EDNSTWESLLQTLQEGRPGSKILVTTDDQS 293 (795)
Q Consensus 238 ~~~~~~~l~~~l~~-~~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (795)
..+.....++.+.. +-=|+|||++-- ...-..+++...+.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222334444444 445999999732 122355667777766667889999999864
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.27 E-value=0.036 Score=56.13 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC----------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF---------------- 231 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---------------- 231 (795)
..+++.|+|.+|+|||+||.++.... . ..=..++|++..+. ++++.+.+ ++++......
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 67899999999999999999986521 1 22346889888654 44555543 3333211100
Q ss_pred CCCCCChHHHHHHHHHhcCC-CeEEEEEeCCC
Q 044700 232 SSQGQELEPYLRYIRKSIAR-NRFILVIDDVW 262 (795)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdvw 262 (795)
.......+++...+...+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00123345666666666654 55689999873
No 288
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.01 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.21 E-value=0.036 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999887
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.03 Score=53.61 Aligned_cols=123 Identities=21% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC--CCCHHHHHHHHHHHhcCC--cccCCCC------CCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA--DSDVLSVASSIAEALGAS--ASAFSSQ------GQE 237 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~--~~~~~~~------~~~ 237 (795)
...+++|+|..|.|||||.+.++.-.. ...+.+++.-.. ....... ...++.- ....... ...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 457999999999999999999998422 234444442111 0111111 1111110 0000000 011
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh
Q 044700 238 LEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK 297 (795)
Q Consensus 238 ~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~ 297 (795)
.+...-.+.+.+..++-++++|+-.. -+......+...+.....+..||++|.+.+....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222334555667778999998532 2223334444444332235678888887766554
No 291
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.089 Score=58.05 Aligned_cols=175 Identities=17% Similarity=0.270 Sum_probs=99.3
Q ss_pred ceeecchhHHHHHHHHhCCCC-----------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 147 ETCGVDEEKEDLVSKLLSSST-----------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~-----------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++=|-++-..++.-.+..+-. ...=|.+||++|+|||-||++|+| +.+-.| ++|-++
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----- 579 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----- 579 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH-----
Confidence 444455555555555544321 356688999999999999999999 444454 444443
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----Chh------hHHHHHHhhcC--CCCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----DNS------TWESLLQTLQE--GRPG 282 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----~~~------~~~~l~~~l~~--~~~g 282 (795)
+++... .......+...+.+.-..-+++|++|.+..- +.. ....+...+.. ...|
T Consensus 580 ---ELlNkY---------VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 580 ---ELLNKY---------VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred ---HHHHHH---------hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 112111 1223345566666666788999999987321 111 22234443332 2456
Q ss_pred cEEEEEcCChHHHHh--hCC-----cccCCCCChHhHHHHHHHHhhcCCCc-hhhhhHHHHHHHHHHHcCCCc
Q 044700 283 SKILVTTDDQSIADK--IGS-----TENIRRASDEASWSLFESAAFFNRSQ-EVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 283 s~iivTtR~~~va~~--~~~-----~~~l~~L~~~~~~~Lf~~~a~~~~~~-~~~~~~~~~~~~i~~~c~G~P 347 (795)
.-||-+|-.+++... ..+ .+.++.-+.+|-.++++...-....+ ...-++.+||+. .+|.|.-
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 667777766655332 222 16777778888888888776321111 222345555543 3555553
No 292
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.18 E-value=0.084 Score=54.17 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=68.2
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc-CC
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA-FS 232 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~ 232 (795)
..+.++..|.... ...-++|+|..|+|||||.+.++.... ...+.+++.-. .....+-..++......-... ..
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCE-EeecchhHHHHHHHhccccccccc
Confidence 3445555555432 457899999999999999999998432 22334444210 000001112333222211110 00
Q ss_pred C--C-CCChHHHHHHHHHhc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHH
Q 044700 233 S--Q-GQELEPYLRYIRKSI-ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIAD 296 (795)
Q Consensus 233 ~--~-~~~~~~~~~~l~~~l-~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~ 296 (795)
. + ...... ...+...+ ...+-++++|.+- ..+.+..+...+. .|..+|+||-+..+..
T Consensus 172 ~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0 011111 11222222 3578899999984 3345555555543 5778999998766543
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.042 Score=52.64 Aligned_cols=106 Identities=20% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE------eCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG------ASADSDVLSVASSIAEALGASASAFSSQGQELEPY 241 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 241 (795)
...+++|+|..|+|||||++.+..-.. ...+.+++. +.+... ....+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~q 78 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID----------------------LSGGELQ 78 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC----------------------CCHHHHH
Confidence 457999999999999999999987322 223333332 111110 1111222
Q ss_pred HHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChHHHHhh
Q 044700 242 LRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG--RPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 242 ~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~va~~~ 298 (795)
.-.+.+.+..++-++++|+--. -+......+...+... ..+..||++|.+.......
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 3344555666778999998532 2223333333333221 1235677777777655543
No 294
>PRK07667 uridine kinase; Provisional
Probab=96.16 E-value=0.0058 Score=59.74 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+.|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566777766555668999999999999999999987
No 295
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.029 Score=62.13 Aligned_cols=189 Identities=16% Similarity=0.143 Sum_probs=108.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh--ccCceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM--RYFDIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
+++||-+.-...|...+.... -..-....|.-|+||||+|+-++.-.--. ...+ ++..=..-++|-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---------PC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---------PCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---------cchhhhhhHhhhcC
Confidence 578999999999999998764 34566789999999999998887621100 1111 11110111111111
Q ss_pred hcCCcccCC-CCCCChHHHHHHHHHh---c-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHh
Q 044700 224 LGASASAFS-SQGQELEPYLRYIRKS---I-ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADK 297 (795)
Q Consensus 224 l~~~~~~~~-~~~~~~~~~~~~l~~~---l-~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~ 297 (795)
-....-+++ .....++++...+.+. - .++-=+.|+|.|.--....|..+...+..-....+.|+.|++.. +...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000000 0112233333322222 1 34555889999976667789998888876555666666665553 3322
Q ss_pred hCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 298 IGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 298 ~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
.-+. |.++.++.++-...+...+-..+-.. ..+....|++...|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCChh
Confidence 2222 99999999988888877764332221 23445567777777553
No 296
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.12 E-value=0.02 Score=59.49 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
..++|+|+|++|+||||++..++.....+..-..+..|+.... ......+..-.+.++.... ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence 4579999999999999999998873322211124555554321 1122222333333333221 2233344544444
Q ss_pred HhcCCCeEEEEEeCC
Q 044700 247 KSIARNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~~~~LlVlDdv 261 (795)
.. .+ .=+|++|..
T Consensus 269 ~~-~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RL-RD-KDLILIDTA 281 (282)
T ss_pred Hc-cC-CCEEEEeCC
Confidence 33 32 347777753
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.11 E-value=0.03 Score=59.46 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc----cCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 161 KLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR----YFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 161 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
+|..+-....++-|+|.+|+|||+||..++-...... .-..++||+....|+++++. +|++.++.
T Consensus 115 lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 115 ILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred hhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3433323578999999999999999988774322211 11368999999999988764 55666554
No 298
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.10 E-value=0.036 Score=57.18 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCH--HHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDV--LSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
..++|.++|.+|+||||++..++.. ....-..+.+++.. .+.. .+-++..++..+...................+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999999999888863 33322345555543 2332 23333344444432111000111112223344
Q ss_pred HHhcCCCeEEEEEeCC
Q 044700 246 RKSIARNRFILVIDDV 261 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdv 261 (795)
.....+..-++++|-.
T Consensus 148 ~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 148 QKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 4444444557888875
No 299
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.038 Score=55.38 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcc-----hh------ccC---ceeEEEEeCCCC------CH--------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYK-----VM------RYF---DIRIWVGASADS------DV-------------- 213 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~~------~~-------------- 213 (795)
...+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||+=...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 447999999999999999999987211 10 001 235565421111 11
Q ss_pred --------HHHHHHHHHHhcCCccc-CCCCC-CChHHHHHHHHHhcCCCeEEEEEeC----CCCCChhhHHHHHHhhcCC
Q 044700 214 --------LSVASSIAEALGASASA-FSSQG-QELEPYLRYIRKSIARNRFILVIDD----VWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 214 --------~~~~~~i~~~l~~~~~~-~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDd----vw~~~~~~~~~l~~~l~~~ 279 (795)
.+...+.+++++..... ..... ...+.-...+.+.|.+++=|+|||. |........-++...+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 24444555555544211 00122 2223334566788899999999996 3223334455555555543
Q ss_pred CCCcEEEEEcCChHHHHh
Q 044700 280 RPGSKILVTTDDQSIADK 297 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~~ 297 (795)
|..|++.|-+-.....
T Consensus 189 --g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 --GKTVLMVTHDLGLVMA 204 (254)
T ss_pred --CCEEEEEeCCcHHhHh
Confidence 8889999988765544
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.021 Score=65.99 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=83.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc------CceeEEEEeCCCCCHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY------FDIRIWVGASADSDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~~~ 219 (795)
+.++||++|++++++.|.....+.. .++|.+|||||++|.-++. ++... =+..++. -+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s------------LD 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS------------LD 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE------------ec
Confidence 5689999999999999998753333 3689999999998866665 22111 0111111 01
Q ss_pred HHHHhcCCcccCCCCCCChHHHHHHHHHhcC-CCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcEEEEEc
Q 044700 220 IAEALGASASAFSSQGQELEPYLRYIRKSIA-RNRFILVIDDVWIE---------DNSTWESLLQTLQEGRPGSKILVTT 289 (795)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTt 289 (795)
+..-..+.. ...+.++..+.+.+.++ .++.++++|.+..- ..+.-+-+...+.. +.-..|=.||
T Consensus 234 ~g~LvAGak-----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAK-----YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred HHHHhcccc-----ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 222222222 33445555554444443 45899999987431 11222233333332 3333344555
Q ss_pred CChHHHHhh-------CCc--ccCCCCChHhHHHHHHHH
Q 044700 290 DDQSIADKI-------GST--ENIRRASDEASWSLFESA 319 (795)
Q Consensus 290 R~~~va~~~-------~~~--~~l~~L~~~~~~~Lf~~~ 319 (795)
-++ .-... ... +.+...+.+++..+++-.
T Consensus 308 ~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 332 21111 111 788899999998888643
No 301
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.09 E-value=0.017 Score=60.90 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=43.8
Q ss_pred HHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc----cCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 161 KLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR----YFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 161 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
+|...-....++.|+|.+|+|||||+..++....... .-..++||+....++..++ ..+++.++.
T Consensus 88 ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 88 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3443333678999999999999999998875222211 1236799999888888764 445555443
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.06 E-value=0.079 Score=54.33 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=91.4
Q ss_pred CceeecchhHHHHHHHHhCCC--CCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCCH-HHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS--TEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSDV-LSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~~~~~i~ 221 (795)
..++|-.++..++-.++.+.- .+..-+.|+|+.|.|||+|...+..+ .+.| +..+-|...+..-. +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 578899998888888886531 14556779999999999999888875 2233 33444555544332 22344455
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcC------CCeEEEEEeCCCCCChh-hHHHHHHhh---c-CCCCCcEEEEEcC
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIA------RNRFILVIDDVWIEDNS-TWESLLQTL---Q-EGRPGSKILVTTD 290 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdvw~~~~~-~~~~l~~~l---~-~~~~gs~iivTtR 290 (795)
.|+............+..+....+-..|+ +-++++|+|.+.-.... .-..+...| . ...+=+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 54443221111122333333344444442 24578888776321111 111112222 2 2245566678998
Q ss_pred ChHHHH---hh----CCc--ccCCCCChHhHHHHHHHHh
Q 044700 291 DQSIAD---KI----GST--ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 291 ~~~va~---~~----~~~--~~l~~L~~~~~~~Lf~~~a 320 (795)
-..... .+ ... +-++.++-++..+++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 654321 11 111 4456666677777766554
No 303
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.06 E-value=0.074 Score=58.42 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA-DSDVLSVASSIAEALGAS 227 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 227 (795)
...+|.++|.+|+||||+|..++.. ....-..+..|++.. .....+.++.++++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 4689999999999999999999873 332212344444322 112344555666666543
No 304
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.05 E-value=0.048 Score=51.76 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=77.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIA 250 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 250 (795)
++.|.|.+|+|||++|.++... ....++++.-...++.+ +.+.|.+........+. ......++.+.+.+. .
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~-t~E~~~~l~~~l~~~-~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWR-TIETPRDLVSALKEL-D 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCce-EeecHHHHHHHHHhc-C
Confidence 3679999999999999998762 22467788777777653 44444443222221111 111112333333221 2
Q ss_pred CCeEEEEEeCC--CC-----CC--------hhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCCcccCCCCChHhHHHH
Q 044700 251 RNRFILVIDDV--WI-----ED--------NSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGSTENIRRASDEASWSL 315 (795)
Q Consensus 251 ~~~~LlVlDdv--w~-----~~--------~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~l~~L~~~~~~~L 315 (795)
+.-.+++|.+ |. .+ ...+..+...+.. .+..+|++|. + +-.+..+.+..-..
T Consensus 73 -~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsn--E--------vG~g~vp~~~~~r~ 139 (169)
T cd00544 73 -PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSN--E--------VGLGVVPENALGRR 139 (169)
T ss_pred -CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEEC--C--------cCCCCCCCCHHHHH
Confidence 2337999985 11 10 0122223333332 4555666652 2 22334455566666
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 316 FESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 316 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
|..... .....+...|.+++....|+|+
T Consensus 140 f~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 665441 2334445555555555577775
No 305
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.05 E-value=0.054 Score=57.90 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=33.7
Q ss_pred chhHHHHHHHHhCCC-CCCcEEEEEcCCCChHHHHHHHHhcCc
Q 044700 152 DEEKEDLVSKLLSSS-TEIPIISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 152 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
+.-.+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566777777654 478999999999999999999998843
No 306
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.05 E-value=0.018 Score=64.70 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+|+.++|++|+||||||..|+++. .| .++=|+.|..-++..+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS------------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence 56899999999999999999999842 23 3677888887777776666665554432
Q ss_pred hc--CCCeEEEEEeCCCCCChhhHHHHHHhh
Q 044700 248 SI--ARNRFILVIDDVWIEDNSTWESLLQTL 276 (795)
Q Consensus 248 ~l--~~~~~LlVlDdvw~~~~~~~~~l~~~l 276 (795)
.+ .+++.-+|+|.+.-......+.+...+
T Consensus 381 ~l~adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ccccCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 22 267888999998555434445444444
No 307
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.031 Score=53.82 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCc--ccCCCC----------C
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASA--SAFSSQ----------G 235 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--~~~~~~----------~ 235 (795)
...+++|+|..|+|||||++.++... ....+.+.+.-..-.....-.......+.... ...... .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 45799999999999999999998632 22344444421100000000001111111100 000000 1
Q ss_pred CChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-C-CCcEEEEEcCChHHHHh
Q 044700 236 QELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-R-PGSKILVTTDDQSIADK 297 (795)
Q Consensus 236 ~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~-~gs~iivTtR~~~va~~ 297 (795)
...+...-.+-..+..++-++++|+--. -|......+...+... . .|..||++|.+......
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1112222334556667778999998522 2333444444444322 2 25678888877766553
No 308
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0018 Score=63.82 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred hhcCccEEEEeCCCCC--CCCCCCCCCCccCeeeccccc
Q 044700 678 LLSRLTILSLKDWTNC--EQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 678 ~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~ 714 (795)
.+++|++|+|++|++. ..++.+..+++|..|++.+|+
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4455666666665543 344445555556666665554
No 309
>PRK00625 shikimate kinase; Provisional
Probab=96.01 E-value=0.046 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 310
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.00 E-value=0.038 Score=52.60 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=76.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
.+|.|.|.+|+||||+|..+.... . ..++++.-...++ .+..+.|..........+. ......++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~-t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQ-TVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCe-EecccccHHHHHHhhc
Confidence 368999999999999999988631 1 1244554444443 3455565554443322221 1111122344444433
Q ss_pred CCCeEEEEEeCC--CCC-----Ch-hhHH----HHHHhhcCCCCCcEEEEEcCChHHHHhhCCcccCCCCChHhHHHHHH
Q 044700 250 ARNRFILVIDDV--WIE-----DN-STWE----SLLQTLQEGRPGSKILVTTDDQSIADKIGSTENIRRASDEASWSLFE 317 (795)
Q Consensus 250 ~~~~~LlVlDdv--w~~-----~~-~~~~----~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~l~~L~~~~~~~Lf~ 317 (795)
.+. -++++|.+ |-. +. +.|. .+...+. ..+..+|+|+-. .-.+..+.+..-..|.
T Consensus 75 ~~~-~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~E----------vg~g~vp~~~~~r~~~ 141 (170)
T PRK05800 75 APG-RCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNE----------VGMGIVPEYRLGRHFR 141 (170)
T ss_pred CCC-CEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcC----------CcccccCCCHHHHHHH
Confidence 332 37888986 210 10 1222 2333333 245556666532 1223344445555555
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 318 SAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 318 ~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
.... .....+...+.++.....|+|+-+
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 4431 223444445555555557777644
No 311
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.06 Score=51.59 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcc--cCCCC--------CCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASAS--AFSSQ--------GQE 237 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~--------~~~ 237 (795)
...+++|+|..|.|||||++.++.... ...+.+++.-....+.. ..+...++.-.. ..... ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 457999999999999999999987422 23445554321100000 111111111000 00000 011
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChHHHHhh
Q 044700 238 LEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-RPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 238 ~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~va~~~ 298 (795)
.+...-.+.+.+..++-++++|+--. -|......+...+... ..|..||++|.+.......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 12222345566677888999998532 2233333444443322 2367889999887765543
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.98 E-value=0.029 Score=54.91 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=43.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcchhcc-Cc---eeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKVMRY-FD---IRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
||+|.|.+|+||||+|+.+.. ..... .. ....+.............. ................+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 33321 22 1233332222222222221 11111111001114566677777777
Q ss_pred HhcCCCeEEE
Q 044700 247 KSIARNRFIL 256 (795)
Q Consensus 247 ~~l~~~~~Ll 256 (795)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666444
No 313
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.037 Score=64.88 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=78.3
Q ss_pred CceeecchhHHHHHHHHhCCCC------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSST------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 219 (795)
..++|.++.+..|.+.+..... ....+.+.|+.|+|||-||++++. .+-+..+.-+-|+.|+- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 4688999999999988876432 466889999999999999999987 33333334444544432 22
Q ss_pred HHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCC
Q 044700 220 IAEALGASASAFSSQGQELEPYLRYIRKSIARNRF-ILVIDDVWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 279 (795)
+.+.++.+.. .-..+....|.+.++.++| +|+||||...+......+...+..+
T Consensus 633 vskligsp~g------yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPG------YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcc------cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333343321 1222334577788888886 5666999777776777676766654
No 314
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.036 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++.++|++|+||||++.+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999986
No 315
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.066 Score=60.86 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=84.1
Q ss_pred CceeecchhHHHHHHHHh---CCC--------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSS--------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.+..++.+.+.+. ... ...+.|.++|++|.|||.||+++++ .....|- .+... +
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~-~-- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS-E-- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH-H--
Confidence 355666666555554432 211 1556899999999999999999999 4444442 22211 1
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-----CCh------hhHHHHHHhhcCCC--C
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWI-----EDN------STWESLLQTLQEGR--P 281 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-----~~~------~~~~~l~~~l~~~~--~ 281 (795)
+.... .......+...+....+..++.|++|++.. ... .....+...+.... .
T Consensus 312 -----l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 312 -----LLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred -----Hhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 11100 111222333444445567889999998721 110 12333444443222 3
Q ss_pred CcEEEEEcCChHHHHh-------hCCcccCCCCChHhHHHHHHHHhh
Q 044700 282 GSKILVTTDDQSIADK-------IGSTENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 282 gs~iivTtR~~~va~~-------~~~~~~l~~L~~~~~~~Lf~~~a~ 321 (795)
+..||-||-....... +...+.+..-+.++..+.|+.+.-
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 3334555544433321 111288889999999999998873
No 316
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0072 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
--|.|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999983
No 317
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.92 E-value=0.041 Score=56.96 Aligned_cols=41 Identities=34% Similarity=0.391 Sum_probs=34.9
Q ss_pred eeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHh
Q 044700 148 TCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAY 190 (795)
Q Consensus 148 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 190 (795)
+-+|..+..--+++|+++ .+..|.+.|.+|.|||.||.+..
T Consensus 226 i~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHH
Confidence 446778888888899988 79999999999999999986654
No 318
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.91 E-value=0.044 Score=57.63 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh----ccCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 161 KLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM----RYFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 161 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
+|..+=...+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+++++.+ +++.++.
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 344333366899999999999999998876322221 1124789999999999888764 5666654
No 319
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.90 E-value=0.012 Score=61.79 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
....++|||++|.|||.+|+++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999993
No 320
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.41 Score=49.92 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc---c---hh--ccCceeEEEEe-CCCCCHHHHHHHHHHHhc
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY---K---VM--RYFDIRIWVGA-SADSDVLSVASSIAEALG 225 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~ 225 (795)
++.+.+.+..+. -..+..++|..|.||+++|+.+.+.. . +. .|=+-..+++. +....++++. ++.+.+.
T Consensus 5 ~~~l~~~i~~~~-l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNK-ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHhCC-CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 444555555542 45677799999999999998887621 0 01 11112223321 1111222211 2222221
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC-ChHHHHhhCCc---
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTD-DQSIADKIGST--- 301 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~va~~~~~~--- 301 (795)
.... -.+++-++|+|++...+....+.+...+..-..++.+|++|. ...+.......
T Consensus 83 ~~~~-------------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 83 FSSF-------------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred cCCc-------------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 1110 025777889999866666678888888877667777776554 34444333322
Q ss_pred ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 302 ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 302 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
+++.+++.++..+.+.... . + ++.++.++...+|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~---~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN---K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC---C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999887775431 1 1 23355566666662244444
No 321
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.89 E-value=0.13 Score=58.18 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=39.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.+++|....+.++.+.+..-.....-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 46999999999998888654335578899999999999999999973
No 322
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.89 E-value=0.027 Score=59.88 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++-|+|.+|+|||++|.+++-....... =..++||+..+.|++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5789999999999999999988753222111 14789999999888877654 344443
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.084 Score=58.13 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC--HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD--VLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
.+++.++|++|+||||++..++........-..+..|+... +. ..+-++.-.+.++.+.. ...+..++...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHH
Confidence 46999999999999999988876322112223456665432 21 11222233333333221 2233345555554
Q ss_pred HhcCCCeEEEEEeCCCC--CChhhHHHHHHhhc
Q 044700 247 KSIARNRFILVIDDVWI--EDNSTWESLLQTLQ 277 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw~--~~~~~~~~l~~~l~ 277 (795)
.. . ..=+|++|..-. .+....+.+...+.
T Consensus 296 ~~-~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 296 QL-R-DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred Hh-C-CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 42 2 346888896532 22233444544444
No 324
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.86 E-value=0.015 Score=55.30 Aligned_cols=91 Identities=24% Similarity=0.268 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchh-ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVM-RYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..++.+.|+.|+|||.||+.++. .+. +.....+-++.+.-..-.+.-..+-..++.... .+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~--------------~v~~ 66 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG--------------YVGA 66 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC--------------HHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcccc--------------eeec
Confidence 56889999999999999999998 443 344556666665433311111111111111110 0000
Q ss_pred hcCCCeEEEEEeCCCCCCh-----------hhHHHHHHhhcC
Q 044700 248 SIARNRFILVIDDVWIEDN-----------STWESLLQTLQE 278 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~-----------~~~~~l~~~l~~ 278 (795)
. ..-+|+||++..... ..|..+...+..
T Consensus 67 ~---~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 67 E---EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp H---HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred c---chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 0 011999999977777 678888887754
No 325
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.86 E-value=0.32 Score=49.41 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=82.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+.|+|-.. ..++..++.......+.+.|+|+.|+|||+-++.+++.. .....+..+..++...+...+.....
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHh
Confidence 45666433 333455554443355699999999999999999999832 22334456667777777777776666
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPG 282 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 282 (795)
.... ....+....+...+.+..-+|++|+...-....++.+.......+-|
T Consensus 145 ~~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 145 GATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred cccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 5532 34455566666777888888999987666667788887766554444
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.86 E-value=0.03 Score=59.41 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc----cCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR----YFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++-|+|.+|+||||++.+++-...... .=..++||+....|+.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 568999999999999999998876432211 11378999999988887765 3444443
No 327
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.85 E-value=0.12 Score=52.15 Aligned_cols=118 Identities=21% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcc------------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASAS------------------ 229 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 229 (795)
...++.|.|.+|+||||||.++... ....-..++|++.... .+.+.+. +++++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 5689999999999999999987652 1123346788876443 3444333 333322110
Q ss_pred --cCCCCCCChHHHHHHHHHhcCC---CeEEEEEeCCCC---CChhhHHHHHHhhcC--CCCCcEEEEEcC
Q 044700 230 --AFSSQGQELEPYLRYIRKSIAR---NRFILVIDDVWI---EDNSTWESLLQTLQE--GRPGSKILVTTD 290 (795)
Q Consensus 230 --~~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iivTtR 290 (795)
.......+.+++...+++..+. +.-.+|+|.+.. ++......+...+.. ...|..+++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0000123556666666665543 345889998621 121111121111111 235778888875
No 328
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.84 E-value=0.052 Score=57.59 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh----ccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM----RYFDIRIWVGASADSDVLSVASSIAEALGAS 227 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 227 (795)
..+++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+++++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 66889999999999999998886322221 1124789999999999888765 55665543
No 329
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.011 Score=57.50 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+.+|+|.|.+|+||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567999999999999999999998
No 330
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.03 Score=56.86 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh--ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM--RYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
--++|.++|++|.|||+|.+++++...++ ..|....-+.++.. .++ ...... ....+..+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLF----SKWFsE------SgKlV~kmF~kI 241 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLF----SKWFSE------SGKLVAKMFQKI 241 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHH----HHHHhh------hhhHHHHHHHHH
Confidence 35899999999999999999999966443 44544444443321 111 111111 222344555666
Q ss_pred HHhcCCCeE--EEEEeCC
Q 044700 246 RKSIARNRF--ILVIDDV 261 (795)
Q Consensus 246 ~~~l~~~~~--LlVlDdv 261 (795)
.+.+..+.. .+.+|.|
T Consensus 242 ~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEV 259 (423)
T ss_pred HHHHhCCCcEEEEEeHHH
Confidence 666665443 4445877
No 331
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.82 E-value=0.029 Score=56.00 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 332
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.82 E-value=0.021 Score=59.64 Aligned_cols=87 Identities=29% Similarity=0.273 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..+++-|+|..|+||||||..+.. .....-..++||+....+++.. ++.++......- ..+...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 568999999999999999999987 4444456789999988887643 334443322110 12344566666666
Q ss_pred HhcCC-CeEEEEEeCC
Q 044700 247 KSIAR-NRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~-~~~LlVlDdv 261 (795)
..++. .--++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 66544 4458888987
No 333
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.81 E-value=0.082 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999874
No 334
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.78 E-value=0.13 Score=53.41 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 456899999999999999999877321 12124678887665 45566666655543
No 335
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.77 E-value=0.041 Score=62.60 Aligned_cols=135 Identities=18% Similarity=0.152 Sum_probs=78.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+. ..+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e---~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAE---SELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHH---HHhc
Confidence 5799999999999998877555667889999999999999999997422 1112345566654322 2221 1222
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
+.......... ......+.. .+. --|+||+|..-.......+...+..+. ...|||.||...
T Consensus 260 G~~~g~~~ga~--~~~~g~~~~--a~g-GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 260 GHVKGAFTGAI--SNRSGKFEL--ADG-GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CccccccCCCc--ccCCcchhh--cCC-CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 21110000000 000001111 222 246899997766666777777665432 245888887543
No 336
>PTZ00301 uridine kinase; Provisional
Probab=95.76 E-value=0.011 Score=58.29 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 337
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.75 E-value=0.097 Score=50.51 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe-------------------CCCCC----------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA-------------------SADSD---------------- 212 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~---------------- 212 (795)
...|+.|+|++|+|||||.+.+..=+.+ =++.+||+- -+.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4579999999999999999999863322 234555532 11121
Q ss_pred ---------HHHHHHHHHHHhcCCccc--CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcC-C
Q 044700 213 ---------VLSVASSIAEALGASASA--FSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQE-G 279 (795)
Q Consensus 213 ---------~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~-~ 279 (795)
.++...++++.++..... .+.......+-.-.|.+.|.=++-++.+|..-+. |++--.++...... .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 234444555555543321 1123333444455677788888889999997432 33333333333222 3
Q ss_pred CCCcEEEEEcCChHHHHhhCCc
Q 044700 280 RPGSKILVTTDDQSIADKIGST 301 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~~~~~~ 301 (795)
..|-.+|+.|-.-..|..+...
T Consensus 184 ~eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred HcCCeEEEEechhHHHHHhhhe
Confidence 4677788888887777766543
No 338
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.13 Score=55.55 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc-cC-ceeEEEEeCCCCCHH--HHHHHHHHHhcCCcccCCCCCCChHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR-YF-DIRIWVGASADSDVL--SVASSIAEALGASASAFSSQGQELEPYLR 243 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 243 (795)
..++|.++|..|+||||.+..++....... .- ..+..+++. ++... .-++..++.++.+.. ......++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE----eeCcHHHHHH
Confidence 467999999999999999998887332211 11 234444443 33332 234455555554322 2334455555
Q ss_pred HHHHhcCCCeEEEEEeCCCCCC--hhhHHHHHHhhcC
Q 044700 244 YIRKSIARNRFILVIDDVWIED--NSTWESLLQTLQE 278 (795)
Q Consensus 244 ~l~~~l~~~~~LlVlDdvw~~~--~~~~~~l~~~l~~ 278 (795)
.+... .+.-+|++|...... ...+.++...+..
T Consensus 248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 55443 345688889874432 2234555555543
No 339
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.73 E-value=0.048 Score=62.08 Aligned_cols=134 Identities=18% Similarity=0.161 Sum_probs=73.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+.++|....+.++++.+..-......|.|+|..|+||+++|+.+.+... ..-..-+.++++.-. .+.+. ..+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~--~~~~e---~elF 276 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP--DDVVE---SELF 276 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC--HHHHH---HHhc
Confidence 5799999988888887754322345688999999999999999876321 111223456655433 12222 1222
Q ss_pred CCcc-cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASAS-AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
+... ... ... +.....+.. ...-.|+||+|..........+...+..+. ...|||.||...
T Consensus 277 G~~~~~~~-~~~--~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 277 GHAPGAYP-NAL--EGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCCCCCcC-Ccc--cCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 2111 000 000 000001111 122357899997766666666766665421 124788877544
No 340
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.73 E-value=0.041 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|..|+|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999987
No 341
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.72 E-value=0.076 Score=53.50 Aligned_cols=133 Identities=21% Similarity=0.189 Sum_probs=72.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc----------------cC-ceeEEEEeC---------------------C
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR----------------YF-DIRIWVGAS---------------------A 209 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~F-~~~~wv~vs---------------------~ 209 (795)
...+++|+|+.|+|||||.+.++.-.+... .+ ....+|.-+ .
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 458999999999999999999987221100 01 022333211 0
Q ss_pred CC---C--HHHHHHHHHHHhcCCcccC--CCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC----CChhhHHHHHHhhcC
Q 044700 210 DS---D--VLSVASSIAEALGASASAF--SSQGQELEPYLRYIRKSIARNRFILVIDDVWI----EDNSTWESLLQTLQE 278 (795)
Q Consensus 210 ~~---~--~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~----~~~~~~~~l~~~l~~ 278 (795)
.+ + -.+.....++.++...... -......+.-...+.+.|.++.-+++||.=-+ ..+...-++...+.
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~- 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN- 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-
Confidence 01 1 1224444455555432110 01222333344566777888888999996311 11112222333332
Q ss_pred CCCCcEEEEEcCChHHHHhhCCc
Q 044700 279 GRPGSKILVTTDDQSIADKIGST 301 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~~~~~ 301 (795)
...|..||+++-+-+.|...+..
T Consensus 186 ~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhCCE
Confidence 13577899999999888766543
No 342
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.70 E-value=0.13 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4579999999999999999999874
No 343
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.68 E-value=0.057 Score=51.72 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC--CCCHHHHHHHHHHHhcCCccc--CCCC------CCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA--DSDVLSVASSIAEALGASASA--FSSQ------GQE 237 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~--~~~~------~~~ 237 (795)
...+++|+|..|+|||||++.++.-.. ...+.++++-.. ....... ...+...... .... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 457999999999999999999997321 233444432110 1111111 1111111100 0000 111
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChHHHH
Q 044700 238 LEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-RPGSKILVTTDDQSIAD 296 (795)
Q Consensus 238 ~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~va~ 296 (795)
.+...-.+-+.+-.++-++++|+-.. -+......+...+... ..|..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12222334455566777899998632 2223333333333221 24677888888776654
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.13 Score=54.76 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
..++|.++|+.|+||||++..++.. ....-..+.+|+.... ....+-++..++.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 5789999999999999999998863 2222234556665322 2234445555555544322 2344555555554
Q ss_pred HhcC-CCeEEEEEeCCCC--CChhhHHHHHHhh
Q 044700 247 KSIA-RNRFILVIDDVWI--EDNSTWESLLQTL 276 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdvw~--~~~~~~~~l~~~l 276 (795)
..-. +..=+|++|-.-. .+....+++....
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 4321 3456888887643 2233445554433
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.66 E-value=0.044 Score=58.58 Aligned_cols=112 Identities=22% Similarity=0.191 Sum_probs=70.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|.++.+..+...+... +-+.+.|.+|+|||+||+.++. .... ..++|.+.......++.-...-...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~~~~ 94 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAYAAL 94 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhHhhh
Confidence 45899999888888888776 5688999999999999999998 3332 3466777777666665543322221
Q ss_pred ---CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcC
Q 044700 226 ---ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQE 278 (795)
Q Consensus 226 ---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~ 278 (795)
.....+ ... .+ +..-+.++++|.++......-..+...+..
T Consensus 95 ~~~~~~~~~--~~g-------pl---~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 95 LLEPGEFRF--VPG-------PL---FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hccCCeEEE--ecC-------Cc---ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 100000 000 00 011116899999988776666666665543
No 346
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0051 Score=36.25 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=10.6
Q ss_pred CCeEEcCCCCccccCcccC
Q 044700 581 LRYLNLSLLKIAELPEELC 599 (795)
Q Consensus 581 L~~L~L~~~~l~~lp~~i~ 599 (795)
|++|+|++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 347
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.65 E-value=0.2 Score=56.75 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=39.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.+++|....+.++.+.+..-.....-|.|.|..|.||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999888654335578899999999999999999974
No 348
>PRK06547 hypothetical protein; Provisional
Probab=95.63 E-value=0.014 Score=55.73 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+...+... ...+|+|.|.+|+||||+|+.+...
T Consensus 6 ~~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGG--GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33444433 6789999999999999999999874
No 349
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.63 E-value=0.081 Score=53.20 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 220 (795)
...++.|.|.+|+||||||.+++... .+.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 45799999999999999986665522 1222 346676633 3556666665
No 350
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.62 E-value=0.1 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999873
No 351
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.098 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 352
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.11 Score=51.61 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+++|+|..|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 353
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.60 E-value=0.2 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.12 Score=55.42 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCC-CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASA-DSDVLSVASSIAEALGASASAFSSQGQELEPYLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 244 (795)
...++.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.+.. ...+..++...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHH
Confidence 4579999999999999999999873 32233 3455554322 22344555555666655432 22222233333
Q ss_pred HHHhcCCCeEEEEEeCCCC
Q 044700 245 IRKSIARNRFILVIDDVWI 263 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdvw~ 263 (795)
+. .+.++ -+|++|..-.
T Consensus 210 l~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred HH-HhcCC-CEEEEcCCCC
Confidence 33 33444 5666898743
No 355
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.58 E-value=0.13 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999874
No 356
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.58 E-value=0.15 Score=50.37 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999873
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.57 E-value=0.08 Score=53.65 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHH
Q 044700 161 KLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 161 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 220 (795)
+|..+=...+++.|.|.+|+|||++|.++... .-..-+.++||+... ++.++.+.+
T Consensus 13 ~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 13 ILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 34333336789999999999999999887652 112345788888765 455555553
No 358
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.56 E-value=0.21 Score=52.32 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=40.3
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHH
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSV 216 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 216 (795)
.++=..+....++..+... +.|.|.|.+|+||||+|+.++. +.... .+.|.++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 3443444556677777554 5699999999999999999998 44333 235555555544433
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.56 E-value=0.048 Score=56.45 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC-c-eeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF-D-IRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
...+|+|.|..|+||||+|+.+.. ...... + .+..++...-....+.... .+.....-.....+.+.+...+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHHH
Confidence 678999999999999999987765 222212 1 2444444333322222222 2211100011455666666666
Q ss_pred HHhcCCC
Q 044700 246 RKSIARN 252 (795)
Q Consensus 246 ~~~l~~~ 252 (795)
....+++
T Consensus 135 ~~Lk~g~ 141 (290)
T TIGR00554 135 SDLKSGK 141 (290)
T ss_pred HHHHCCC
Confidence 6665554
No 360
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.56 E-value=0.12 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 361
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.0025 Score=72.27 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=24.1
Q ss_pred cCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccc
Q 044700 705 LESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWEC 756 (795)
Q Consensus 705 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 756 (795)
|+.|++..|..++...-.... ..+.+++.+.+.+++.......
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~---------~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLA---------DSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred cceEecccCccccccchHHHh---------hhhhccccCCccCcccccchhh
Confidence 567777666544432211111 1166788888888877665543
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.54 E-value=0.16 Score=55.35 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 363
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.54 E-value=0.068 Score=62.41 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=79.4
Q ss_pred CceeecchhHHHHHHHHh---CCC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.++.|.+..++++.+.+. ... .-.+-|.++|++|.||||+|+.+++. ....| +.++.. +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----H
Confidence 457787766666555443 211 01345899999999999999999883 33233 222211 1
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC----------hhhHHH----HHHhhcCC--
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED----------NSTWES----LLQTLQEG-- 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~----------~~~~~~----l~~~l~~~-- 279 (795)
+. ... .......+...+.......+++|++|++..-. ...+.. +...+...
T Consensus 221 ~~----~~~---------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 FV----EMF---------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred hH----Hhh---------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 11 111 01111223333444444577899999983310 112222 22222221
Q ss_pred CCCcEEEEEcCChHHHHhh--C-----CcccCCCCChHhHHHHHHHHh
Q 044700 280 RPGSKILVTTDDQSIADKI--G-----STENIRRASDEASWSLFESAA 320 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~~~--~-----~~~~l~~L~~~~~~~Lf~~~a 320 (795)
..+.-+|.||...+..... . ..+.++..+.++-.+++..+.
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 2344555677766543321 1 117777777777778877665
No 364
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.54 E-value=0.077 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 365
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.53 E-value=0.16 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 366
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.051 Score=60.20 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA-DSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
...+|+|+|.+|+||||++.+++...........+..++... .......++...+.++.... ...+..++...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~----~a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----ecCcHHHHHHHHH
Confidence 468999999999999999988886321111123344554321 11122222222233322211 2223334444444
Q ss_pred HhcCCCeEEEEEeCCC
Q 044700 247 KSIARNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw 262 (795)
+. . ..-+|++|..-
T Consensus 425 ~l-~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RL-R-DYKLVLIDTAG 438 (559)
T ss_pred Hh-c-cCCEEEecCCC
Confidence 32 3 34588888763
No 367
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.51 E-value=0.032 Score=59.87 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=50.6
Q ss_pred CceeecchhHHHHHHHHhCC------------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC---ceeEEEEeCC-
Q 044700 146 SETCGVDEEKEDLVSKLLSS------------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYF---DIRIWVGASA- 209 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~- 209 (795)
..++|.++.+..+.-.+... ....+-|.++|++|+|||++|+.++. .....| +..-|+..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 47999999999887666542 11347899999999999999999998 333333 2222222221
Q ss_pred CCCHHHHHHHHHHHh
Q 044700 210 DSDVLSVASSIAEAL 224 (795)
Q Consensus 210 ~~~~~~~~~~i~~~l 224 (795)
..+++.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665544
No 368
>PRK08233 hypothetical protein; Provisional
Probab=95.51 E-value=0.01 Score=57.46 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 369
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.50 E-value=0.12 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999974
No 370
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.50 E-value=0.0088 Score=54.00 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 044700 172 ISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (795)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999983
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=95.50 E-value=0.084 Score=57.88 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.++|.+|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877776
No 372
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.47 E-value=0.14 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|.|..|+|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999974
No 373
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.11 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 374
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.47 E-value=0.14 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999873
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.091 Score=52.30 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 376
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.46 E-value=0.068 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999974
No 377
>PTZ00035 Rad51 protein; Provisional
Probab=95.46 E-value=0.094 Score=55.85 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh----ccCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 161 KLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM----RYFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 161 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
+|..+=....++.|+|.+|+|||||+..++-..+.. ..=..++||+....++++++ .++++.++.
T Consensus 110 lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 110 LLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 343333367899999999999999999887532211 11235779998888887774 444555443
No 378
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.14 Score=52.14 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh-c--cCc--eeEEEEeC----CCCCHHHHHH--------------HHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM-R--YFD--IRIWVGAS----ADSDVLSVAS--------------SIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~~~~--------------~i~~~l 224 (795)
...+++|+|..|+|||||++.++...... + .++ .+.++.-. ...++.+.+. ++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 34799999999999999999998743211 1 122 12232211 1123333222 222232
Q ss_pred cCCcc--cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChHHHHhhC
Q 044700 225 GASAS--AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG--RPGSKILVTTDDQSIADKIG 299 (795)
Q Consensus 225 ~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~va~~~~ 299 (795)
+.... .........+...-.+...+..++-++++|+--. -+...-..+...+... ..|..||++|.+...+....
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 22110 0000112222223345566677788999998522 1223333333333322 23677888888877665443
No 379
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.42 E-value=0.11 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 380
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.40 E-value=0.02 Score=51.49 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
++..++-+.|...-....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555555432245799999999999999999999843
No 381
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.01 Score=46.97 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 382
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.18 Score=51.64 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 383
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.39 E-value=0.098 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4478999999999999999999874
No 384
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.38 E-value=0.06 Score=58.01 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+. .-++.++....... ....+.+++.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 5679999999999999999999873 3333346778876443 33322 22344443221110 01233444444442
Q ss_pred HhcCCCeEEEEEeCC
Q 044700 247 KSIARNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~~~~LlVlDdv 261 (795)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 385
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.36 E-value=0.23 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|.|..|+|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999986
No 386
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.35 E-value=0.19 Score=59.13 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=73.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+... ..-..-+.|++..-. ...+...++....
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elfg~~~ 401 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFLGSDR 401 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhcCCCC
Confidence 5789999988888887765433445578999999999999999987321 111123445544432 1222222221110
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC---C--------CcEEEEEcCC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR---P--------GSKILVTTDD 291 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR~ 291 (795)
... .... ...+. ....=.|+||+|..........+...+..+. . ..|||.||..
T Consensus 402 ~~~-----~~~~----~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 402 TDS-----ENGR----LSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCc-----cCCC----CCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 000 0000 00000 1123358999997766666777777665431 1 3467776653
No 387
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.35 E-value=0.14 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999874
No 388
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.14 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4579999999999999999999874
No 389
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.32 E-value=0.012 Score=58.53 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999973
No 390
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.30 E-value=0.12 Score=58.09 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=41.4
Q ss_pred ceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE
Q 044700 147 ETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG 206 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 206 (795)
+++--.+-++++..||... ....+++.+.|++|+||||.++.+++. . .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 3444456778888888753 124679999999999999999999983 2 466677865
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.065 Score=50.38 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS--DVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
...+++|+|..|.|||||++.+.... ....+.+++.-.... ..... ...+.... .....+...-.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-----qlS~G~~~r~~l 91 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-----QLSGGQRQRVAL 91 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-----eCCHHHHHHHHH
Confidence 34799999999999999999999843 234455555432111 11111 11111110 111222333345
Q ss_pred HHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChHHHHhh
Q 044700 246 RKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG-RPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~va~~~ 298 (795)
...+...+-++++|+.-. -+......+...+... ..+..++++|.+.......
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 566666788999998632 1223334444433321 2256788888877766554
No 392
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.30 E-value=0.2 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999888876
No 393
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.30 E-value=0.031 Score=55.47 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS 248 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 248 (795)
.+++.|+|..|.|||||.+.+...... .+-...+|.. . .. ...+.++...+........ .......-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~-~~~~d~i~~~l~~~~si~~-~~S~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-AT-IGLVDKIFTRMSSRESVSS-GQSAFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cE-EeeeeeeeeeeCCccChhh-ccchHHHHHHHHHHH
Confidence 488999999999999999998742111 1111112211 0 00 0111222222222211000 111111111222222
Q ss_pred --cCCCeEEEEEeCCCCCC-hhhH----HHHHHhhcCC-CCCcEEEEEcCChHHHHhh
Q 044700 249 --IARNRFILVIDDVWIED-NSTW----ESLLQTLQEG-RPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 249 --l~~~~~LlVlDdvw~~~-~~~~----~~l~~~l~~~-~~gs~iivTtR~~~va~~~ 298 (795)
+..++.|+++|...... ..+. ..+...+... ..+..+|+||-+.+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 24678999999985432 1111 1233333322 2346899999998887654
No 394
>PRK05439 pantothenate kinase; Provisional
Probab=95.29 E-value=0.063 Score=56.02 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcC-CcccCCCCCCChHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEALGA-SASAFSSQGQELEPYLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~ 244 (795)
..-+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+...+.+.. ..+.. ... ...-+.+.+...
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~---Pes~D~~~l~~~ 157 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGF---PESYDMRALLRF 157 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCC---cccccHHHHHHH
Confidence 678999999999999999998886 332221 22334444333322222211 01111 111 144566666667
Q ss_pred HHHhcCCCe
Q 044700 245 IRKSIARNR 253 (795)
Q Consensus 245 l~~~l~~~~ 253 (795)
+....+++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 766666654
No 395
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.28 E-value=0.07 Score=52.90 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE---------eCCCCCHHHHH--HHHHHHhcCCccc-CCC--
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG---------ASADSDVLSVA--SSIAEALGASASA-FSS-- 233 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------vs~~~~~~~~~--~~i~~~l~~~~~~-~~~-- 233 (795)
....|.++||+|+||||+.+.++.+. ...+....-|+ ..-+.|+++.. ++.+++.+..... +-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 56788999999999999999998743 23332222222 23445666654 4678877654321 000
Q ss_pred --CCCChHHHHHHHHHhcCCCeEEEEEeC
Q 044700 234 --QGQELEPYLRYIRKSIARNRFILVIDD 260 (795)
Q Consensus 234 --~~~~~~~~~~~l~~~l~~~~~LlVlDd 260 (795)
-....++....+.+.-..-+|. ++|-
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~-liDT 123 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYV-LIDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEE-EEcC
Confidence 0133455555665554443343 3443
No 396
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.27 E-value=0.22 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999874
No 397
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.17 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999864
No 398
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.24 E-value=0.016 Score=51.19 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCcchhccCc
Q 044700 172 ISILGTEGTGKTTLATLAYNSYKVMRYFD 200 (795)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 200 (795)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5666674
No 399
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.23 E-value=0.14 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 400
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.23 E-value=0.025 Score=56.40 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
+..++++.+.....+..+|+|.|.+|+|||||...+......+.+==.++-|+-|.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 45567777766544778999999999999999998887433222222455555555554
No 401
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.22 E-value=0.012 Score=58.19 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 402
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.19 E-value=0.17 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 403
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.19 E-value=0.18 Score=50.12 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999874
No 404
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.02 Score=52.25 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=33.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASA 228 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 228 (795)
+|.|-|.+|+||||+|+.++++.-. .| | +.-.++++|+++.+.+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--KL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--ce-----e------eccHHHHHHHHHcCCCH
Confidence 7899999999999999999984322 11 1 23368889988877653
No 405
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.19 E-value=0.076 Score=48.85 Aligned_cols=109 Identities=13% Similarity=0.173 Sum_probs=66.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
--+.|+|-||+||+++.+.+|.- -..+.+...+|++.-.. + .....++....+.+.
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfler----q------------------i~v~~Edvr~mlWdt- 76 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLER----Q------------------IKVLIEDVRSMLWDT- 76 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhH----H------------------HHhhHHHHHHHHHHh-
Confidence 34679999999999999999973 23345667788754321 0 001112222222211
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhh
Q 044700 250 ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGSTENIRRASDEASWSLFESAAFFNRSQEVR 329 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~ 329 (795)
..+++.+.+....-.+...|.+++.|.++.-.
T Consensus 77 --------------agqeEfDaItkAyyrgaqa~vLVFSTTDr~SF---------------------------------- 108 (246)
T KOG4252|consen 77 --------------AGQEEFDAITKAYYRGAQASVLVFSTTDRYSF---------------------------------- 108 (246)
T ss_pred --------------ccchhHHHHHHHHhccccceEEEEecccHHHH----------------------------------
Confidence 12356777777766777788777777554211
Q ss_pred hhHHHHHHHHHHHcCCCchHH
Q 044700 330 EHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 330 ~~~~~~~~~i~~~c~G~PLai 350 (795)
....+.-++|.+.|+..|..+
T Consensus 109 ea~~~w~~kv~~e~~~IPtV~ 129 (246)
T KOG4252|consen 109 EATLEWYNKVQKETERIPTVF 129 (246)
T ss_pred HHHHHHHHHHHHHhccCCeEE
Confidence 122456678888899999765
No 406
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.18 E-value=0.11 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999875
No 407
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.17 E-value=0.15 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999863
No 408
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.16 E-value=0.12 Score=58.52 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=38.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..++|....+.++...+..-......|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888888777544335567889999999999999999884
No 409
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.13 E-value=0.22 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5579999999999999999999863
No 410
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.13 E-value=0.25 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999863
No 411
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.15 Score=51.46 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999874
No 412
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.0021 Score=63.44 Aligned_cols=99 Identities=24% Similarity=0.174 Sum_probs=70.4
Q ss_pred cCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc--c
Q 044700 520 VQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE--E 597 (795)
Q Consensus 520 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~ 597 (795)
+.+++.|++-++. +.++ ....+ |+.|++|.|+-| .+ ..+ ..+..+++|+.|.|+.|.|..+-+ -
T Consensus 18 l~~vkKLNcwg~~-----L~DI--sic~k-Mp~lEVLsLSvN-kI----ssL-~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-----LDDI--SICEK-MPLLEVLSLSVN-KI----SSL-APLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC-----ccHH--HHHHh-cccceeEEeecc-cc----ccc-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4566677776665 2222 23445 899999999988 44 333 457788999999999999887644 5
Q ss_pred cCCCCcCcEEeccCCCCCCccch-----hhccCcccceee
Q 044700 598 LCGLWNLQTLELNWCTNLETLPQ-----GMGKLINLEHLL 632 (795)
Q Consensus 598 i~~L~~L~~L~L~~~~~~~~lp~-----~i~~l~~L~~L~ 632 (795)
+.+|++|++|.|..|...+.-+. .+.-|++|+.|+
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77899999999988765555443 356688888885
No 413
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.12 E-value=0.069 Score=62.34 Aligned_cols=88 Identities=28% Similarity=0.247 Sum_probs=59.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
..+++-|+|.+|+||||||.+++.. ....=..++|++..+.++.. .+++++...... .......++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 5789999999999999999887652 22233568999988887743 566666543211 113344456666666
Q ss_pred HhcC-CCeEEEEEeCCC
Q 044700 247 KSIA-RNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdvw 262 (795)
..+. ++--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6554 456689999873
No 414
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.12 E-value=0.15 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 415
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.025 Score=54.14 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 416
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.11 E-value=0.14 Score=55.65 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=35.6
Q ss_pred CceeecchhHHHHHHHHh-------C---CC--C----CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLL-------S---SS--T----EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.++.++.+...+. . .. . ....|.++|++|+|||++|+.++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 478999999998876551 1 10 0 236799999999999999999997
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.10 E-value=0.17 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+..+|.|+|.+|+|||||+..+.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999883
No 418
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.08 E-value=0.026 Score=52.34 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEE
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVG 206 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 206 (795)
..||-|.|.+|+||||||+++.+ +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 4444444566664
No 419
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.07 E-value=0.26 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+..-
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999863
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.06 E-value=0.15 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999873
No 421
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.05 E-value=0.057 Score=59.02 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=35.2
Q ss_pred CceeecchhHHHHHHHHhC-------C-----C-C-CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLS-------S-----S-T-EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~-------~-----~-~-~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+||.+..++.+...+.. . + . ..+.|.++|++|+|||++|+.+++
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4689999998887655421 0 0 0 246789999999999999999987
No 422
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.16 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999863
No 423
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.03 E-value=0.043 Score=58.96 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=51.0
Q ss_pred CceeecchhHHHHHHHHhCC--------C----CCCcEEEEEcCCCChHHHHHHHHhcCcchhccC---ceeEEEEeC-C
Q 044700 146 SETCGVDEEKEDLVSKLLSS--------S----TEIPIISILGTEGTGKTTLATLAYNSYKVMRYF---DIRIWVGAS-A 209 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--------~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 209 (795)
..++|.++.+..+..++... . ...+.|.++|++|+||||||+.+.. .....| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 47999999999998887541 0 0247899999999999999999988 333333 222222211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 044700 210 DSDVLSVASSIAEAL 224 (795)
Q Consensus 210 ~~~~~~~~~~i~~~l 224 (795)
..+.+.+++.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666666655
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.00 E-value=0.08 Score=62.95 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=87.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+++.|+|+.+.||||+.+.+.-..-. ...-++|++.... .-.++..|...++....- .........-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si-~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSI-EQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccch-hhchhHHHHHHHHHHH
Confidence 3478999999999999999988642100 0111122222100 001111111111111100 0011111111111222
Q ss_pred hcC--CCeEEEEEeCCCCC-ChhhHHHH----HHhhcCCCCCcEEEEEcCChHHHHhhCCc-----ccCCCCChHhHHHH
Q 044700 248 SIA--RNRFILVIDDVWIE-DNSTWESL----LQTLQEGRPGSKILVTTDDQSIADKIGST-----ENIRRASDEASWSL 315 (795)
Q Consensus 248 ~l~--~~~~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~va~~~~~~-----~~l~~L~~~~~~~L 315 (795)
.+. ..+-|+++|..... +...-..+ ...+. ..|+.+|+||-..+++...... ..+. ++ .+...
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d-~~~l~- 475 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FD-EETLR- 475 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee-cCcCc-
Confidence 222 47789999997542 22222223 22332 3478999999998887654432 1111 01 11100
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhh
Q 044700 316 FESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDS 371 (795)
Q Consensus 316 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~ 371 (795)
| .+-+..+.+ -...|-.|++.+ |+|-.+..-|..+-......+..++.+
T Consensus 476 ~-~Ykl~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~ 524 (782)
T PRK00409 476 P-TYRLLIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIAS 524 (782)
T ss_pred E-EEEEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 0 000111111 134567777766 789888888877765544455555543
No 425
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.00 E-value=0.032 Score=56.39 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCH
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDV 213 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 213 (795)
-.+++..+.....+..+|+|.|.||+|||||.-.+.....-+++==.++-|+-|.+++-
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 34566666665557889999999999999999888875443444335566666666653
No 426
>PRK13409 putative ATPase RIL; Provisional
Probab=95.00 E-value=0.18 Score=58.28 Aligned_cols=131 Identities=20% Similarity=0.142 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEE--E---eCCC------CCHHHHH-------------HHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWV--G---ASAD------SDVLSVA-------------SSIAEA 223 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv--~---vs~~------~~~~~~~-------------~~i~~~ 223 (795)
...+++|+|..|+|||||++.++..... ..+.+++ . +.+. .++.+.+ .++++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 4569999999999999999999974321 1122211 1 1121 1232222 223333
Q ss_pred hcCCcc--cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChHHHHhh
Q 044700 224 LGASAS--AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG--RPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 224 l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~va~~~ 298 (795)
++.... .........+...-.+...+..++-+++||+--. -|...-..+...+... ..|..||++|-+...+...
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 332210 0000122223333345566677888999997421 2233333333333322 2366788888887766654
Q ss_pred CCc
Q 044700 299 GST 301 (795)
Q Consensus 299 ~~~ 301 (795)
...
T Consensus 521 aDr 523 (590)
T PRK13409 521 SDR 523 (590)
T ss_pred CCE
Confidence 443
No 427
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.00 E-value=0.23 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+..-
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 428
>PRK06762 hypothetical protein; Provisional
Probab=94.99 E-value=0.017 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.98 E-value=0.25 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...++++.|+.|+|||||.+.+..-
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999873
No 430
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.16 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999996
No 431
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.94 E-value=0.16 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999875
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.93 E-value=0.095 Score=53.79 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA 209 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 209 (795)
..+++.|.|.+|+|||++|.+++.. ....=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 6789999999999999999997653 212224678888764
No 433
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.93 E-value=0.064 Score=52.77 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+++.|.|..|.||||+.+.+....- ..+. -.+|.... .. -.+.+.|...+...... .........-...+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~-la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~-~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI-MAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSM-ERNLSTFASEMSETAY 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HHHc--CCCcchhh-cC-ccChhheeEecCCcccc-chhhhHHHHHHHHHHH
Confidence 347999999999999999998875321 1111 11222111 01 12233333333322110 0000111111111222
Q ss_pred h--cCCCeEEEEEeCCCCCC-hhh----HHHHHHhhcCCCCCcEEEEEcCChHHHHhhC
Q 044700 248 S--IARNRFILVIDDVWIED-NST----WESLLQTLQEGRPGSKILVTTDDQSIADKIG 299 (795)
Q Consensus 248 ~--l~~~~~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~va~~~~ 299 (795)
. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2 23567899999974321 112 1223333332 3889999999998887654
No 434
>PRK03839 putative kinase; Provisional
Probab=94.91 E-value=0.017 Score=55.86 Aligned_cols=22 Identities=50% Similarity=0.703 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999983
No 435
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.59 Score=45.81 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred cee-ecchhHHHHHHHHhCCCC-----------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 147 ETC-GVDEEKEDLVSKLLSSST-----------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 147 ~~v-Gr~~~~~~l~~~L~~~~~-----------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+.| |.++.+.+|.+.+.-+-. ..+-+.++|++|.|||-||++||++. .+-|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH---
Confidence 345 457777777776643321 56788999999999999999999843 35567777652
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcCC-
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNS---TWESLLQTLQEG- 279 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~~- 279 (795)
+.++ .-+... .-+.++.- -.-..-+.+|+.|.+.+. +.+ ..-++...+..+
T Consensus 217 -lvqk----~igegs------rmvrelfv---marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 217 -LVQK----YIGEGS------RMVRELFV---MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHH----HhhhhH------HHHHHHHH---HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2111 111110 00111111 112345667777876322 111 112233333322
Q ss_pred -CCCcEEEEEcCChHHHHhh--CCc-----ccCCCCChHhHHHHHHHHh
Q 044700 280 -RPGSKILVTTDDQSIADKI--GST-----ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 280 -~~gs~iivTtR~~~va~~~--~~~-----~~l~~L~~~~~~~Lf~~~a 320 (795)
.+.-+||.+|-.-++.... .+. ++.++-+.+.-.++++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3566788777655554321 111 7777777776667765443
No 436
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.91 E-value=0.028 Score=57.92 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCC
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQ 234 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 234 (795)
...+++.+... .+-+.++|+.|+|||++++...+...- ..| ...-++.+..-+...++ .+++.-.....
T Consensus 22 ~~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~----- 90 (272)
T PF12775_consen 22 YSYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRR----- 90 (272)
T ss_dssp HHHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECT-----
T ss_pred HHHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCC-----
Confidence 34566666654 367789999999999999998863221 111 23344555543333332 22221111000
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 044700 235 GQELEPYLRYIRKSIARNRFILVIDDVWIE 264 (795)
Q Consensus 235 ~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~ 264 (795)
. ..-.--.+|+.++++||+--.
T Consensus 91 ~--------~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 91 G--------RVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp T--------EEEEEESSSEEEEEEETTT-S
T ss_pred C--------CCCCCCCCcEEEEEecccCCC
Confidence 0 000112578999999998443
No 437
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.88 E-value=0.2 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999874
No 438
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.88 E-value=0.18 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999863
No 439
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.87 E-value=0.086 Score=53.62 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcch--hccCceeEEEEeCCCCC-HHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKV--MRYFDIRIWVGASADSD-VLSVASSIAE 222 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 222 (795)
.-+-++|+|..|+|||+|+.++.++... +.+-+.++++-+.+... +.++...+.+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 5578899999999999999999875321 12346788998887654 5566665554
No 440
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.1 Score=56.99 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc--CCCCCCChH------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA--FSSQGQELE------ 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~------ 239 (795)
....++|+|..|+|||||++.+..... ...+++++.-....++.++....+.......-. ...+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 557899999999999999999987322 223444543333445555555444433211100 000111111
Q ss_pred ---HHHHHHHHhcCCCeEEEEEeCC
Q 044700 240 ---PYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 240 ---~~~~~l~~~l~~~~~LlVlDdv 261 (795)
.+.++++. +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccch
Confidence 12233443 589999999998
No 441
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.86 E-value=0.32 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4479999999999999999999863
No 442
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0017 Score=64.08 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=45.0
Q ss_pred CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccC
Q 044700 578 LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASM 641 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l 641 (795)
+.+.+.||..+|.+..+. -..+++.|+.|.|+-| .+..+. .+..+++|++|+|..|.|.++
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccH
Confidence 556677888888887552 2347888999999887 555553 377888899999888877655
No 443
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.81 E-value=0.32 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 444
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.15 Score=57.93 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=63.6
Q ss_pred CceeecchhHHHHHHHHhCCC----------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS----------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
+++=|.++.+.+|.+-+.-+= ...+=|.++|++|.|||-+|++|+..- . .-|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH-----
Confidence 577799999999988765421 136678899999999999999999832 2 345666554
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVW 262 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw 262 (795)
+++..- -....+.+.+...+.-+..+|.|++|.+.
T Consensus 740 ---ELLNMY---------VGqSE~NVR~VFerAR~A~PCVIFFDELD 774 (953)
T KOG0736|consen 740 ---ELLNMY---------VGQSEENVREVFERARSAAPCVIFFDELD 774 (953)
T ss_pred ---HHHHHH---------hcchHHHHHHHHHHhhccCCeEEEecccc
Confidence 122211 12233445556666667799999999874
No 445
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.43 Score=48.05 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.+..-
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999873
No 446
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.79 E-value=0.075 Score=58.46 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC-CHHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS-DVLSVASSIAE 222 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~ 222 (795)
.-+-++|+|.+|+|||||+.++.++... .+-+.++++-+.+.. .+.++...+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~ 196 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKE 196 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHh
Confidence 5678999999999999999998884332 245778888777654 35566665554
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.78 E-value=0.023 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 448
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.17 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.+..-
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 449
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.76 E-value=0.3 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|.|..|.|||||.+.++.-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 450
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.75 E-value=0.38 Score=49.77 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 451
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.74 E-value=0.27 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|+.|.|||||.+.++.-
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4479999999999999999999873
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.74 E-value=0.16 Score=54.19 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCChHH-HHHHHHhcCcchhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKT-TLATLAYNSYKVMRYFDIRIWVGASA-DSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
..+||.+||+.||||| |||+..++-. ....=..+..|+... .-...+-++.-++-++.+-. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHH
Confidence 3799999999999997 4666655522 112223455665432 12233444444555554443 334444544444
Q ss_pred HHhcCCCeEEEEEeCCCCC--ChhhHHHHHHhhcC
Q 044700 246 RKSIARNRFILVIDDVWIE--DNSTWESLLQTLQE 278 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdvw~~--~~~~~~~l~~~l~~ 278 (795)
... ++. =+|.+|-+... +.....++...+..
T Consensus 277 ~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 277 EAL-RDC-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred HHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 332 222 35556655332 23344455554443
No 453
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.21 Score=51.96 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++.-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999873
No 454
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.69 E-value=0.3 Score=55.16 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=73.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|......++...+..-......+.|.|..|+||+++|+.+..... ......+-+++..- ..+.+...+ ++
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l--fg 207 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL--FG 207 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh--cC
Confidence 3588888878877777755333446788999999999999999987321 11222334444432 223333222 22
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 292 (795)
....... .... .... .......-.|+||+|..-.......+...+..+. .+.|||+||...
T Consensus 208 ~~~~~~~-~~~~--~~~g---~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 208 HEKGAFT-GANT--RRQG---RFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCCCCC-Cccc--CCCC---cEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1111000 0000 0000 0111123348899997766666677776665431 245888888544
No 455
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.66 E-value=0.23 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 456
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0021 Score=60.72 Aligned_cols=86 Identities=23% Similarity=0.179 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCC-CCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccc
Q 044700 682 LTILSLKDWTNC-EQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMAN 760 (795)
Q Consensus 682 L~~L~L~~~~~~-~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 760 (795)
++.++-+++.+. ..+..+.+++.++.|.+.+|..+.+.+-+..+ +.+++|+.|++++|+.+++-......
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~---------~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG---------GLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc---------ccccchheeeccCCCeechhHHHHHH
Confidence 444444444432 23333555666666666666555544433333 13566666666666665554333222
Q ss_pred cccccceeeecCCCCC
Q 044700 761 VMPCLCSLSFVYCPEL 776 (795)
Q Consensus 761 ~~p~L~~L~l~~C~~L 776 (795)
.+++|+.|.|.+.|..
T Consensus 174 ~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhhhhHHHHhcCchhh
Confidence 3666666666655443
No 457
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.64 E-value=0.13 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 458
>PRK04328 hypothetical protein; Provisional
Probab=94.64 E-value=0.12 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD 210 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 210 (795)
...++.|.|.+|+|||+||.++... ....-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 5689999999999999999987652 2223456888887663
No 459
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.57 Score=48.33 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=72.8
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC--
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-- 231 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-- 231 (795)
.-+++...+..+. -.....++|+.|+||+++|..++.. +-.. ... .. -+.+. .+..+..
T Consensus 5 ~~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~--llC~---------~~~-~~---c~~~~---~~~HPD~~~ 65 (290)
T PRK05917 5 AWEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASL--ILKE---------TSP-EA---AYKIS---QKIHPDIHE 65 (290)
T ss_pred HHHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHH--HhCC---------CCc-cH---HHHHh---cCCCCCEEE
Confidence 3455666666653 4567889999999999999887762 1110 000 00 00000 0010000
Q ss_pred --CCC---CCChHHHHHHHHHhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCC
Q 044700 232 --SSQ---GQELEPYLRYIRKSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGS 300 (795)
Q Consensus 232 --~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~ 300 (795)
+.. ...++++.. +.+.+ .++.-++|+|++...+.+.++.+...+..-..++.+|++|.+. .+.....+
T Consensus 66 i~p~~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 66 FSPQGKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred EecCCCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 000 112333332 22222 3556688999998778889999999887666677766666554 44433332
Q ss_pred c---ccCCCC
Q 044700 301 T---ENIRRA 307 (795)
Q Consensus 301 ~---~~l~~L 307 (795)
. +.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 2 555543
No 460
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.63 E-value=0.35 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.4
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q 044700 170 PIISILGTEGTGKTTLATLAY 190 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~ 190 (795)
.+++|+|..|+|||||++.++
T Consensus 23 g~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999986
No 461
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.021 Score=54.85 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
..+|+|-||=|+||||||+++.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999843
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.62 E-value=0.019 Score=56.42 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 463
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.41 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999763
No 464
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.60 E-value=0.02 Score=55.23 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 465
>PRK04040 adenylate kinase; Provisional
Probab=94.59 E-value=0.024 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 466
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.57 E-value=0.089 Score=51.96 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCccc--CCC-CCCChH----
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS-DVLSVASSIAEALGASASA--FSS-QGQELE---- 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~-~~~~~~---- 239 (795)
.-.-++|+|.+|+|||+|+..+.++. .-+..+++-+.+.. .+.++.+.+...=...... ... +.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 44789999999999999999998843 23445888887653 4556666654321111000 000 111111
Q ss_pred -----HHHHHHHHhcCCCeEEEEEeCC
Q 044700 240 -----PYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 240 -----~~~~~l~~~l~~~~~LlVlDdv 261 (795)
...++++. +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 789999999998
No 467
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.57 E-value=0.17 Score=49.94 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=32.1
Q ss_pred HHHhcCCCeEEEEEeCCCCC-ChhhHH-HHHHhhcCCC-C-CcEEEEEcCChHHHHhh
Q 044700 245 IRKSIARNRFILVIDDVWIE-DNSTWE-SLLQTLQEGR-P-GSKILVTTDDQSIADKI 298 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdvw~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~va~~~ 298 (795)
+.+.+..++-++++|+.-.. +..... .+...+.... . |..||++|.+.+....+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 45566778889999986332 223334 4444443322 2 56788888887766543
No 468
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.56 E-value=0.47 Score=53.09 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999974
No 469
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.44 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.++..
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4579999999999999999999863
No 470
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.13 Score=54.34 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=58.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCC
Q 044700 157 DLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQG 235 (795)
Q Consensus 157 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~ 235 (795)
++-..|-..--...+|.|-|-+|||||||..+++. +....- .++||+-.+. +.++ +--++.++....... ...
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aE 154 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAE 154 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehh
Confidence 34344433222568999999999999999999998 443333 6777654443 3322 233455554332111 134
Q ss_pred CChHHHHHHHHHhcCCCeEEEEEeCCC
Q 044700 236 QELEPYLRYIRKSIARNRFILVIDDVW 262 (795)
Q Consensus 236 ~~~~~~~~~l~~~l~~~~~LlVlDdvw 262 (795)
.+.+++...+.+ .++-++|+|-+.
T Consensus 155 t~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 155 TNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred cCHHHHHHHHHh---cCCCEEEEeccc
Confidence 556666655554 678899999983
No 471
>PRK06217 hypothetical protein; Validated
Probab=94.53 E-value=0.052 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q 044700 171 IISILGTEGTGKTTLATLAYNSY 193 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (795)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999843
No 472
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.53 E-value=0.13 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.23 Score=57.90 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC--HHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD--VLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
.+||+++|+.|+||||++.+++...........+..++.. .+. ..+-++...+.++.+.. ...+..++.+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH----AVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHHHH
Confidence 4799999999999999999988743211111244454432 232 34445555555554332 2234445544444
Q ss_pred HhcCCCeEEEEEeCCC
Q 044700 247 KSIARNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw 262 (795)
. ++++ -+|++|-.-
T Consensus 260 ~-~~~~-D~VLIDTAG 273 (767)
T PRK14723 260 A-LGDK-HLVLIDTVG 273 (767)
T ss_pred H-hcCC-CEEEEeCCC
Confidence 3 3333 366667653
No 474
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.59 Score=47.21 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999863
No 475
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.52 E-value=0.12 Score=56.11 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC-HHHHHHHHHHHhcCCcccC--C-CCCCChH----
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD-VLSVASSIAEALGASASAF--S-SQGQELE---- 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~-~~~~~~~---- 239 (795)
....++|+|..|+|||||++.+++.. ..+.++.+-+.+... +.++...++..-+...... . .+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999999732 224566666766543 4455555543311111000 0 0111111
Q ss_pred -----HHHHHHHHhcCCCeEEEEEeCC
Q 044700 240 -----PYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 240 -----~~~~~l~~~l~~~~~LlVlDdv 261 (795)
.+++++++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd--~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRD--QGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEEcCh
Confidence 12334443 589999999998
No 476
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.52 E-value=0.035 Score=53.84 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=57.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIA 250 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 250 (795)
++.|+|..|.||||+.+.+.-.. +-.+-.+.+|..-.. -.....++..++.... ..........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~----~~~~d~il~~~~~~d~-~~~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAE----LPVFDRIFTRIGASDS-LAQGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheE----ecccceEEEEeCCCCc-hhccccHHHHHHHHHHHHHH
Confidence 47899999999999999998421 111111111111000 0001111111111100 00011112222223444444
Q ss_pred C--CeEEEEEeCCCCC-ChhhHH----HHHHhhcCCCCCcEEEEEcCChHHHHhhC
Q 044700 251 R--NRFILVIDDVWIE-DNSTWE----SLLQTLQEGRPGSKILVTTDDQSIADKIG 299 (795)
Q Consensus 251 ~--~~~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~gs~iivTtR~~~va~~~~ 299 (795)
. ++-++++|+.-.. +...-. .+...+.. ..+..+|++|...++...+.
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 3 7889999997432 111111 22222322 24778999999888776543
No 477
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.48 E-value=0.034 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 478
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.46 E-value=0.032 Score=55.85 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
-|.|+|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.44 E-value=0.059 Score=49.43 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=27.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA 209 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 209 (795)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999432 24455555665544
No 480
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.43 E-value=0.55 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 481
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.43 E-value=0.018 Score=33.91 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=7.9
Q ss_pred CcEEeccCCCCCCccchhh
Q 044700 604 LQTLELNWCTNLETLPQGM 622 (795)
Q Consensus 604 L~~L~L~~~~~~~~lp~~i 622 (795)
|++|||++| .++.+|.+|
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 444555544 233444443
No 482
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.42 E-value=0.43 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++..
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4579999999999999999999974
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.41 E-value=0.028 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998874
No 484
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.39 E-value=0.35 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.31 Score=49.28 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh
Q 044700 243 RYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK 297 (795)
Q Consensus 243 ~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~ 297 (795)
-.+-+.+-.++-++++|+-.. -+......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345566677788999998632 2333444444444332236678888887776654
No 486
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.37 E-value=2.2 Score=47.30 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
...++.|.|.+|+|||++|..++.+...... ..++|++ -..+..++...++.....
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fS--lEm~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFS--LEMSAEQLGERLLASKSG 248 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEE--CCCCHHHHHHHHHHHHcC
Confidence 5579999999999999999999864322222 2456664 445778888887776543
No 487
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.35 E-value=0.086 Score=54.16 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=53.8
Q ss_pred eecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 044700 149 CGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASA 228 (795)
Q Consensus 149 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 228 (795)
.|...+..+.+..+... ...+|.|.|..|+||||+++.+.+. +...-..++.+.-+..+.... + .++..
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~----~-~q~~v-- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG----I-NQVQV-- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC----c-eEEEe--
Confidence 35444444444444333 4578999999999999999988762 221111223332111111100 0 01100
Q ss_pred ccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 044700 229 SAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE 264 (795)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~ 264 (795)
...........++..++..+=.|+++++.+.
T Consensus 131 -----~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 131 -----NEKAGLTFARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred -----CCcCCcCHHHHHHHHhccCCCEEEeccCCCH
Confidence 1111123566777888888889999999543
No 488
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.35 E-value=0.25 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|++|+||||||+.+.-
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 446999999999999999999975
No 489
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.35 E-value=0.029 Score=66.44 Aligned_cols=188 Identities=17% Similarity=0.181 Sum_probs=86.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC---CCCCCChHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF---SSQGQELEPYLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 244 (795)
...++.|+|+.|.|||||.+.+.... +. ....++|.+..... -..+..+...++...... +.-......+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 34799999999999999999987531 00 00111222211100 001111111111100000 0000111122222
Q ss_pred HHHhcCCCeEEEEEeCCCCC-ChhhHHHH----HHhhcCCCCCcEEEEEcCChHHHHhhCCc--ccCCCCChH-hHHHHH
Q 044700 245 IRKSIARNRFILVIDDVWIE-DNSTWESL----LQTLQEGRPGSKILVTTDDQSIADKIGST--ENIRRASDE-ASWSLF 316 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~va~~~~~~--~~l~~L~~~-~~~~Lf 316 (795)
+.. + ..+-|+++|..-.. +...-..+ ...+. ..|+.+|+||-...+....... +.-..+..+ +... |
T Consensus 397 l~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p 471 (771)
T TIGR01069 397 LSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P 471 (771)
T ss_pred HHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e
Confidence 221 2 47899999997542 22233333 22332 3578999999998875543211 110000000 0000 0
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhh
Q 044700 317 ESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDS 371 (795)
Q Consensus 317 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~ 371 (795)
.-+ +..+.+ -...|-.|++.+ |+|-.+.--|..+......++..++.+
T Consensus 472 ~Yk-l~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~ 519 (771)
T TIGR01069 472 TYK-LLKGIP-----GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEK 519 (771)
T ss_pred EEE-ECCCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 000 001111 134567777766 789888888877765544455555543
No 490
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.43 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999999863
No 491
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.33 E-value=0.036 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999974
No 492
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.31 E-value=0.35 Score=45.73 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=63.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeE---EEEeCCCCCHHHHHHHHHHHhcCC----cccCCCCC-----C
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRI---WVGASADSDVLSVASSIAEALGAS----ASAFSSQG-----Q 236 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~~~~i~~~l~~~----~~~~~~~~-----~ 236 (795)
...|-|++..|.||||.|..++-.. ....+ .++ |+.-.........+..+ .+... ...+.... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 4688899999999999997776521 12222 222 33333223333444332 11110 00000000 1
Q ss_pred ChHHHHHHHHHhcCCCe-EEEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 237 ELEPYLRYIRKSIARNR-FILVIDDVWI---EDNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 237 ~~~~~~~~l~~~l~~~~-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
...+.....++.+...+ -++|||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223344455554444 5999998721 11224456666666666778999999977
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.048 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 557999999999999999999976
No 494
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.54 Score=54.02 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++..
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999974
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.29 E-value=0.21 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+-.|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999998876
No 496
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.15 Score=55.59 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC-HHHHHHHHHHHhcCCcccC--C-CCCCChH----
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD-VLSVASSIAEALGASASAF--S-SQGQELE---- 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~-~~~~~~~---- 239 (795)
....++|+|..|+|||||++++++... .+.++++-+.+... +.++..+.+..-+...... . .+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 567899999999999999999998432 24555666666543 4455544443322111000 0 0111111
Q ss_pred -----HHHHHHHHhcCCCeEEEEEeCC
Q 044700 240 -----PYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 240 -----~~~~~l~~~l~~~~~LlVlDdv 261 (795)
.+++.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd--~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRD--QGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHH--CCCcEEEEEeCc
Confidence 12233433 589999999998
No 497
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.26 E-value=0.1 Score=55.96 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcch----hccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKV----MRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLR 243 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 243 (795)
..+=+.|||..|.|||.|.-..|+...+ +-||. ....++-+.+..... .... ..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~----~~~~----l~ 118 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG----QDDP----LP 118 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC----CCcc----HH
Confidence 5788999999999999999999985433 33342 222333333222111 2222 23
Q ss_pred HHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcCChH
Q 044700 244 YIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-RPGSKILVTTDDQS 293 (795)
Q Consensus 244 ~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~ 293 (795)
.+.+.+.++..||.+|...-.+..+-.-+...|..- ..|. ++|+|.|..
T Consensus 119 ~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 119 QVADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred HHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 344555667779999987555554433343333322 3454 555555543
No 498
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.25 E-value=0.041 Score=57.54 Aligned_cols=46 Identities=35% Similarity=0.485 Sum_probs=41.0
Q ss_pred CceeecchhHHHHHHHHhCCCC----CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSST----EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~----~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..|+|.++.+++|++.+..... .-+|+.++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999976432 679999999999999999999887
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.25 E-value=0.035 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++|+|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999998
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.25 E-value=0.21 Score=56.34 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 156 EDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 156 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..+-..|...=....++.|.|.+|+|||||+.++... ....=+.++|+...+ +..++.+.. +.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 3444455444336789999999999999999998873 323334677766554 445555553 4444
Done!