Query 044700
Match_columns 795
No_of_seqs 542 out of 3943
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.2E-48 1.4E-52 441.9 24.3 311 149-484 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-39 5.1E-44 373.9 16.2 286 147-475 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-38 1.9E-42 396.4 23.2 311 146-482 124-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-35 4.9E-40 343.6 20.4 307 146-479 124-449 (591)
5 4fcg_A Uncharacterized protein 99.9 3.8E-23 1.3E-27 220.4 17.2 221 521-773 81-311 (328)
6 4fcg_A Uncharacterized protein 99.9 7.7E-23 2.6E-27 218.0 16.7 223 550-790 80-307 (328)
7 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-23 1.3E-27 219.0 13.5 252 498-781 50-309 (313)
8 4eco_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 232.0 14.5 264 496-781 204-530 (636)
9 3v47_A TOLL-like receptor 5B a 99.9 3E-21 1E-25 216.1 20.0 264 496-781 28-388 (455)
10 3o6n_A APL1; leucine-rich repe 99.9 2.8E-21 9.5E-26 211.7 19.0 267 497-789 44-344 (390)
11 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.4E-26 231.9 16.8 261 496-781 446-770 (876)
12 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.4E-26 231.9 15.1 147 542-693 440-632 (876)
13 2id5_A Lingo-1, leucine rich r 99.9 7.3E-21 2.5E-25 214.3 20.1 261 496-780 30-312 (477)
14 3oja_B Anopheles plasmodium-re 99.9 4.9E-21 1.7E-25 221.6 18.0 267 497-789 50-350 (597)
15 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-21 7.3E-26 205.5 12.4 237 521-790 50-297 (313)
16 3rgz_A Protein brassinosteroid 99.8 4.5E-21 1.5E-25 228.5 16.7 254 498-781 394-722 (768)
17 3t6q_A CD180 antigen; protein- 99.8 7E-21 2.4E-25 221.3 17.4 135 496-641 31-168 (606)
18 4fmz_A Internalin; leucine ric 99.8 2.9E-20 9.8E-25 200.2 20.7 259 497-790 65-339 (347)
19 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-20 4.6E-25 218.9 18.9 137 496-642 30-169 (606)
20 4eco_A Uncharacterized protein 99.8 5.8E-21 2E-25 222.3 15.2 256 498-774 305-598 (636)
21 3rgz_A Protein brassinosteroid 99.8 5.8E-21 2E-25 227.5 15.2 139 570-716 409-551 (768)
22 1xku_A Decorin; proteoglycan, 99.8 4E-20 1.4E-24 197.5 18.9 244 496-775 50-305 (330)
23 2id5_A Lingo-1, leucine rich r 99.8 3.8E-20 1.3E-24 208.4 19.2 256 496-774 54-331 (477)
24 2ft3_A Biglycan; proteoglycan, 99.8 7.1E-20 2.4E-24 195.8 17.3 241 498-775 54-306 (332)
25 3o6n_A APL1; leucine-rich repe 99.8 1E-19 3.5E-24 199.2 18.4 247 498-774 69-350 (390)
26 3zyj_A Leucine-rich repeat-con 99.8 1.2E-19 3.9E-24 202.1 18.7 223 496-749 62-290 (440)
27 3zyi_A Leucine-rich repeat-con 99.8 9.3E-20 3.2E-24 203.6 17.9 223 496-749 73-301 (452)
28 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-19 3.7E-24 207.1 18.5 127 496-638 19-150 (520)
29 3j0a_A TOLL-like receptor 5; m 99.8 2.6E-19 8.7E-24 215.6 21.8 136 496-640 22-162 (844)
30 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-19 7.4E-24 192.0 18.9 247 496-774 76-331 (332)
31 3v47_A TOLL-like receptor 5B a 99.8 1E-19 3.5E-24 203.6 17.1 263 496-780 52-412 (455)
32 2z66_A Variable lymphocyte rec 99.8 4.5E-20 1.5E-24 194.9 13.2 226 496-749 26-259 (306)
33 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.7E-24 209.4 18.3 247 498-774 75-356 (597)
34 1xku_A Decorin; proteoglycan, 99.8 2.1E-19 7E-24 192.0 18.3 245 499-781 32-280 (330)
35 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-19 1.2E-23 209.8 22.1 209 496-715 23-284 (680)
36 2z7x_B TOLL-like receptor 1, v 99.8 1E-19 3.5E-24 207.4 16.7 270 496-782 43-462 (520)
37 2z81_A CD282 antigen, TOLL-lik 99.8 2.3E-19 7.7E-24 205.9 19.2 132 497-639 25-161 (549)
38 3bz5_A Internalin-J, INLJ; leu 99.8 3.5E-19 1.2E-23 198.3 19.8 172 497-694 63-247 (457)
39 3t6q_A CD180 antigen; protein- 99.8 3.2E-19 1.1E-23 207.3 19.9 252 497-780 277-539 (606)
40 2z80_A TOLL-like receptor 2, v 99.8 3.9E-20 1.3E-24 199.6 10.9 252 496-774 50-312 (353)
41 2z63_A TOLL-like receptor 4, v 99.8 2.3E-19 7.8E-24 206.9 17.5 136 496-642 26-165 (570)
42 3j0a_A TOLL-like receptor 5; m 99.8 7.7E-19 2.6E-23 211.4 22.8 189 504-713 10-214 (844)
43 1o6v_A Internalin A; bacterial 99.8 7.1E-19 2.4E-23 197.2 20.7 84 497-595 67-150 (466)
44 2z66_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 190.7 14.4 242 502-774 11-259 (306)
45 3zyj_A Leucine-rich repeat-con 99.8 2.7E-19 9.2E-24 199.1 16.8 240 501-774 46-290 (440)
46 3zyi_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 200.8 15.9 240 501-774 57-301 (452)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.7E-19 1.6E-23 203.7 18.8 127 496-638 50-181 (562)
48 4fmz_A Internalin; leucine ric 99.8 7.9E-19 2.7E-23 188.9 18.2 245 496-774 86-344 (347)
49 1o6v_A Internalin A; bacterial 99.8 1.4E-18 4.8E-23 194.8 20.9 197 497-713 45-275 (466)
50 2z63_A TOLL-like receptor 4, v 99.8 2.9E-19 9.8E-24 206.1 15.3 107 496-613 50-160 (570)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.1E-19 2.4E-23 202.2 18.2 126 501-640 34-160 (562)
52 1ozn_A Reticulon 4 receptor; N 99.8 3.5E-19 1.2E-23 186.0 13.8 219 501-750 14-237 (285)
53 3bz5_A Internalin-J, INLJ; leu 99.8 2E-18 7E-23 192.1 20.7 191 496-714 40-244 (457)
54 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.6E-23 204.0 18.8 135 496-641 50-188 (635)
55 3vq2_A TLR4, TOLL-like recepto 99.8 6.2E-19 2.1E-23 204.8 15.3 243 499-774 308-556 (606)
56 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-18 8.8E-23 197.2 18.9 120 496-624 48-170 (549)
57 2z80_A TOLL-like receptor 2, v 99.8 6.1E-19 2.1E-23 190.2 11.9 257 503-791 36-308 (353)
58 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-18 1.6E-22 177.4 18.2 200 550-774 31-236 (285)
59 3g06_A SSPH2 (leucine-rich rep 99.8 8.9E-18 3E-22 192.6 21.3 159 578-781 120-278 (622)
60 1ziw_A TOLL-like receptor 3; i 99.8 4.7E-18 1.6E-22 200.3 18.8 187 503-709 9-201 (680)
61 1jl5_A Outer protein YOPM; leu 99.8 3E-18 1E-22 190.6 14.8 249 497-788 10-281 (454)
62 3oja_A Leucine-rich immune mol 99.7 6.7E-18 2.3E-22 189.7 15.1 233 498-771 34-270 (487)
63 3o53_A Protein LRIM1, AGAP0063 99.7 3.6E-19 1.2E-23 188.8 4.5 242 497-778 33-277 (317)
64 1wwl_A Monocyte differentiatio 99.7 5.6E-19 1.9E-23 186.9 5.4 236 502-774 47-307 (312)
65 1h6u_A Internalin H; cell adhe 99.7 1.8E-17 6.1E-22 174.8 15.7 193 516-749 36-228 (308)
66 2z62_A TOLL-like receptor 4, v 99.7 1.2E-17 4.1E-22 173.4 13.8 199 499-712 29-233 (276)
67 1p9a_G Platelet glycoprotein I 99.7 2.6E-17 8.9E-22 171.8 16.4 195 498-714 10-206 (290)
68 2z62_A TOLL-like receptor 4, v 99.7 2.7E-17 9.3E-22 170.7 16.3 208 510-749 19-235 (276)
69 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 169.9 15.6 148 552-713 38-191 (270)
70 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-17 6.2E-22 175.7 14.3 218 517-777 30-250 (317)
71 3oja_A Leucine-rich immune mol 99.7 1.9E-18 6.4E-23 194.2 7.0 216 519-776 32-250 (487)
72 1h6u_A Internalin H; cell adhe 99.7 2.3E-17 8E-22 173.9 14.8 189 497-714 40-228 (308)
73 2xwt_C Thyrotropin receptor; s 99.7 2.1E-17 7.2E-22 167.6 13.6 201 551-776 31-239 (239)
74 1jl5_A Outer protein YOPM; leu 99.7 1.1E-16 3.6E-21 178.1 20.0 232 498-786 131-382 (454)
75 3rfs_A Internalin B, repeat mo 99.7 7.6E-17 2.6E-21 166.9 15.2 201 516-756 36-240 (272)
76 2o6q_A Variable lymphocyte rec 99.7 2.3E-16 8E-21 163.0 18.8 196 551-774 16-216 (270)
77 1p9a_G Platelet glycoprotein I 99.7 1.9E-16 6.5E-21 165.2 17.9 199 516-749 5-206 (290)
78 2xwt_C Thyrotropin receptor; s 99.7 5.7E-17 1.9E-21 164.4 13.1 204 510-750 23-238 (239)
79 2ast_B S-phase kinase-associat 99.7 4.8E-18 1.6E-22 181.9 5.4 247 500-782 49-312 (336)
80 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 165.4 15.6 202 550-785 40-244 (272)
81 3g06_A SSPH2 (leucine-rich rep 99.7 3.1E-16 1.1E-20 179.8 20.4 215 498-774 81-295 (622)
82 1wwl_A Monocyte differentiatio 99.7 8.2E-17 2.8E-21 170.2 13.3 193 498-713 95-306 (312)
83 2ca6_A RAN GTPase-activating p 99.7 1.6E-18 5.6E-23 189.3 -2.0 247 512-778 23-317 (386)
84 2ast_B S-phase kinase-associat 99.7 5.3E-18 1.8E-22 181.6 1.9 198 498-713 70-282 (336)
85 4glp_A Monocyte differentiatio 99.7 3.6E-16 1.2E-20 165.2 14.2 223 520-774 63-305 (310)
86 4glp_A Monocyte differentiatio 99.7 1.9E-16 6.5E-21 167.3 12.1 198 500-712 93-303 (310)
87 4g8a_A TOLL-like receptor 4; l 99.7 1.8E-15 6.1E-20 176.6 19.8 129 509-651 42-175 (635)
88 1w5s_A Origin recognition comp 99.6 3.7E-15 1.3E-19 164.2 20.1 292 146-451 22-371 (412)
89 2qen_A Walker-type ATPase; unk 99.6 8.3E-15 2.9E-19 157.5 19.1 293 146-476 12-349 (350)
90 3m19_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 151.9 15.7 151 551-713 35-189 (251)
91 3m19_A Variable lymphocyte rec 99.6 2.5E-15 8.7E-20 153.4 13.9 175 500-695 16-194 (251)
92 1h6t_A Internalin B; cell adhe 99.6 2.2E-15 7.5E-20 157.3 13.7 170 517-714 42-211 (291)
93 4ay9_X Follicle-stimulating ho 99.6 5.7E-15 1.9E-19 158.7 15.6 179 498-694 30-216 (350)
94 1h6t_A Internalin B; cell adhe 99.6 5.4E-15 1.8E-19 154.3 14.4 167 550-749 45-211 (291)
95 4ay9_X Follicle-stimulating ho 99.6 9.4E-15 3.2E-19 157.0 15.4 236 501-772 12-255 (350)
96 2fna_A Conserved hypothetical 99.6 3.6E-14 1.2E-18 153.0 18.9 291 146-475 13-356 (357)
97 1m9s_A Internalin B; cell inva 99.6 8.8E-15 3E-19 167.6 14.7 171 516-714 38-208 (605)
98 2ca6_A RAN GTPase-activating p 99.6 1.4E-16 4.7E-21 174.0 -1.3 257 498-772 32-339 (386)
99 1z7x_W Ribonuclease inhibitor; 99.6 4E-16 1.4E-20 174.6 2.4 206 498-713 28-266 (461)
100 4ezg_A Putative uncharacterize 99.6 5.2E-15 1.8E-19 145.0 9.8 150 518-691 41-192 (197)
101 1m9s_A Internalin B; cell inva 99.6 8.8E-15 3E-19 167.6 13.1 185 496-708 41-226 (605)
102 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.7E-19 165.0 13.3 181 552-773 60-240 (571)
103 1xeu_A Internalin C; cellular 99.6 5.6E-15 1.9E-19 151.7 9.7 167 519-714 17-183 (263)
104 3cvr_A Invasion plasmid antige 99.6 1.5E-14 5.1E-19 163.8 13.4 176 499-715 60-242 (571)
105 1z7x_W Ribonuclease inhibitor; 99.5 2.9E-16 9.9E-21 175.8 -0.8 140 499-639 86-240 (461)
106 4ezg_A Putative uncharacterize 99.5 2.1E-14 7.2E-19 140.6 12.2 147 550-713 43-191 (197)
107 3goz_A Leucine-rich repeat-con 99.5 1.2E-15 4.1E-20 164.9 1.5 236 497-749 21-295 (362)
108 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 138.5 15.4 144 554-713 22-169 (229)
109 4b8c_D Glucose-repressible alc 99.5 3.7E-15 1.3E-19 175.1 4.6 196 497-713 172-369 (727)
110 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 136.4 14.9 125 580-713 29-158 (208)
111 1dce_A Protein (RAB geranylger 99.5 2.9E-16 1E-20 178.8 -4.8 178 518-713 346-543 (567)
112 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.4E-18 138.3 14.2 146 554-714 14-163 (220)
113 1dce_A Protein (RAB geranylger 99.5 2.7E-16 9.2E-21 179.1 -5.3 197 497-710 348-567 (567)
114 2o6s_A Variable lymphocyte rec 99.5 1.9E-14 6.4E-19 142.4 8.5 144 551-714 28-176 (208)
115 3ogk_B Coronatine-insensitive 99.5 3.3E-15 1.1E-19 172.9 3.5 152 550-711 163-326 (592)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-13 6.2E-18 136.4 13.3 144 555-713 15-163 (220)
117 3goz_A Leucine-rich repeat-con 99.5 1.6E-14 5.5E-19 156.0 3.9 247 507-774 7-295 (362)
118 1fnn_A CDC6P, cell division co 99.5 8.6E-12 3E-16 136.0 25.6 318 146-480 17-385 (389)
119 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.6E-18 131.1 9.6 131 550-692 23-159 (168)
120 1xeu_A Internalin C; cellular 99.5 2.4E-13 8.4E-18 139.4 12.1 157 510-695 31-187 (263)
121 2v1u_A Cell division control p 99.5 3.1E-12 1.1E-16 139.3 21.7 288 146-451 19-351 (387)
122 2xot_A Amphoterin-induced prot 99.4 1.6E-13 5.6E-18 147.9 10.8 171 502-693 22-202 (361)
123 2qby_B CDC6 homolog 3, cell di 99.4 3.4E-12 1.2E-16 138.9 20.6 289 146-451 20-339 (384)
124 3e6j_A Variable lymphocyte rec 99.4 6E-13 2E-17 133.5 13.1 132 550-694 39-173 (229)
125 2v9t_B SLIT homolog 2 protein 99.4 3.7E-13 1.3E-17 134.1 11.1 128 551-692 32-164 (220)
126 2xot_A Amphoterin-induced prot 99.4 2.8E-13 9.4E-18 146.1 10.1 168 524-714 21-200 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.4 5.3E-13 1.8E-17 133.0 11.3 131 551-694 32-167 (220)
128 2je0_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 125.9 8.7 127 550-688 16-148 (149)
129 4b8c_D Glucose-repressible alc 99.4 5.1E-14 1.7E-18 165.5 3.2 136 569-713 214-351 (727)
130 2p1m_B Transport inhibitor res 99.4 3E-14 1E-18 164.9 1.1 209 497-710 104-345 (594)
131 2ell_A Acidic leucine-rich nuc 99.4 6E-13 2E-17 126.6 8.4 128 577-714 22-158 (168)
132 3ogk_B Coronatine-insensitive 99.4 1.1E-13 3.9E-18 159.9 2.6 101 677-789 433-543 (592)
133 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 124.4 6.3 125 577-711 15-148 (149)
134 3qfl_A MLA10; coiled-coil, (CC 99.4 2.2E-12 7.5E-17 112.5 9.8 62 3-75 21-84 (115)
135 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 124.6 9.2 126 550-691 18-151 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4.2E-17 125.5 6.1 130 574-714 14-151 (176)
137 1njg_A DNA polymerase III subu 99.3 2.9E-11 9.9E-16 122.4 16.3 198 146-355 23-229 (250)
138 2p1m_B Transport inhibitor res 99.3 5.6E-13 1.9E-17 154.2 3.4 39 736-775 479-518 (594)
139 1w8a_A SLIT protein; signaling 99.3 6.6E-12 2.3E-16 122.1 10.2 125 554-693 11-139 (192)
140 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 120.2 11.6 123 554-691 13-137 (193)
141 1ds9_A Outer arm dynein; leuci 99.3 2.6E-14 8.7E-19 140.1 -7.6 111 573-694 42-154 (198)
142 1w8a_A SLIT protein; signaling 99.2 1.8E-11 6.2E-16 119.0 10.4 122 582-714 11-137 (192)
143 2wfh_A SLIT homolog 2 protein 99.2 3.7E-11 1.3E-15 116.8 12.4 122 582-714 13-137 (193)
144 2qby_A CDC6 homolog 1, cell di 99.2 3.1E-11 1.1E-15 131.3 12.9 289 146-451 20-348 (386)
145 2chg_A Replication factor C sm 99.2 2.3E-10 7.7E-15 114.0 17.4 181 146-353 17-203 (226)
146 1ds9_A Outer arm dynein; leuci 99.2 3.7E-13 1.3E-17 131.8 -6.7 128 542-686 40-180 (198)
147 2o6r_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 110.9 11.4 124 554-693 10-137 (177)
148 2o6r_A Variable lymphocyte rec 99.1 3E-10 1E-14 108.7 12.6 124 580-714 8-135 (177)
149 3sb4_A Hypothetical leucine ri 99.1 1.8E-10 6.2E-15 122.3 12.0 188 578-781 100-314 (329)
150 1sxj_B Activator 1 37 kDa subu 99.0 1.9E-09 6.6E-14 114.0 14.6 182 146-354 21-210 (323)
151 2r9u_A Variable lymphocyte rec 99.0 9.7E-10 3.3E-14 104.7 10.5 63 579-642 33-97 (174)
152 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 104.0 10.0 104 581-694 14-119 (174)
153 3g39_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 102.7 10.8 83 553-643 11-95 (170)
154 1hqc_A RUVB; extended AAA-ATPa 99.0 6.3E-09 2.1E-13 110.1 16.1 255 146-450 12-324 (324)
155 3g39_A Variable lymphocyte rec 99.0 1.9E-09 6.4E-14 102.4 9.9 105 580-694 10-116 (170)
156 4fdw_A Leucine rich hypothetic 98.9 2.9E-08 1E-12 107.7 19.1 223 515-780 130-361 (401)
157 1iqp_A RFCS; clamp loader, ext 98.9 9.7E-09 3.3E-13 108.7 12.2 182 146-354 25-212 (327)
158 3sb4_A Hypothetical leucine ri 98.8 9.9E-09 3.4E-13 108.8 10.1 197 550-769 100-327 (329)
159 3te6_A Regulatory protein SIR3 98.8 1.5E-07 5.2E-12 97.4 17.3 170 146-321 20-212 (318)
160 3un9_A NLR family member X1; l 98.7 2.2E-09 7.7E-14 115.4 2.8 162 520-693 71-252 (372)
161 1jr3_A DNA polymerase III subu 98.7 2E-07 6.8E-12 100.6 16.6 197 146-354 16-221 (373)
162 2ifg_A High affinity nerve gro 98.7 3.6E-08 1.2E-12 105.4 10.5 75 569-644 22-98 (347)
163 4fdw_A Leucine rich hypothetic 98.7 1.7E-07 5.7E-12 101.8 15.7 231 499-772 136-379 (401)
164 2chq_A Replication factor C sm 98.6 1.6E-07 5.5E-12 98.8 11.3 178 146-352 17-202 (319)
165 2ifg_A High affinity nerve gro 98.6 9.3E-08 3.2E-12 102.1 9.2 103 582-694 11-117 (347)
166 1jbk_A CLPB protein; beta barr 98.6 5.5E-08 1.9E-12 93.9 6.7 45 146-192 22-66 (195)
167 3un9_A NLR family member X1; l 98.5 2.5E-08 8.6E-13 107.1 1.3 160 497-670 71-252 (372)
168 2ra8_A Uncharacterized protein 98.5 1.2E-07 3.9E-12 101.2 6.1 87 516-610 134-227 (362)
169 3pfi_A Holliday junction ATP-d 98.5 5.2E-06 1.8E-10 88.0 19.0 249 146-451 29-313 (338)
170 3bos_A Putative DNA replicatio 98.5 4.6E-07 1.6E-11 91.0 10.0 171 146-353 28-216 (242)
171 1sxj_D Activator 1 41 kDa subu 98.5 1.7E-06 5.7E-11 92.5 14.8 193 146-353 37-234 (353)
172 3e4g_A ATP synthase subunit S, 98.4 4.9E-08 1.7E-12 91.3 0.9 104 680-789 61-172 (176)
173 2z4s_A Chromosomal replication 98.4 3.7E-06 1.3E-10 92.2 14.8 200 146-371 105-331 (440)
174 1sxj_E Activator 1 40 kDa subu 98.3 2.8E-06 9.7E-11 90.7 13.4 193 146-353 14-236 (354)
175 3uk6_A RUVB-like 2; hexameric 98.3 1.1E-05 3.9E-10 86.5 17.9 198 146-352 44-301 (368)
176 3h4m_A Proteasome-activating n 98.3 2.3E-06 7.8E-11 88.4 11.8 178 146-352 17-229 (285)
177 3syl_A Protein CBBX; photosynt 98.3 5.2E-06 1.8E-10 86.8 13.9 156 147-322 32-219 (309)
178 3pvs_A Replication-associated 98.3 2.8E-06 9.5E-11 93.0 11.4 174 146-351 26-212 (447)
179 3u61_B DNA polymerase accessor 98.3 1.1E-05 3.8E-10 84.9 15.7 173 146-349 26-211 (324)
180 1a5t_A Delta prime, HOLB; zinc 98.3 1.3E-05 4.3E-10 84.7 16.0 170 152-354 8-205 (334)
181 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.8E-11 92.8 6.6 164 546-713 135-317 (362)
182 1sxj_A Activator 1 95 kDa subu 98.2 6.5E-06 2.2E-10 92.4 12.3 191 146-354 39-253 (516)
183 1d2n_A N-ethylmaleimide-sensit 98.2 1.2E-05 4.1E-10 82.3 12.5 193 146-370 33-259 (272)
184 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.1E-05 3.7E-10 82.0 12.1 176 146-348 6-215 (262)
185 2p65_A Hypothetical protein PF 98.1 3.2E-06 1.1E-10 80.9 7.6 45 146-192 22-66 (187)
186 3b9p_A CG5977-PA, isoform A; A 98.1 6.1E-05 2.1E-09 78.1 17.2 180 146-354 21-233 (297)
187 3n70_A Transport activator; si 98.1 7.9E-06 2.7E-10 74.8 9.0 113 147-291 2-115 (145)
188 3eie_A Vacuolar protein sortin 98.1 2.2E-05 7.5E-10 82.5 13.6 180 146-354 18-228 (322)
189 1sxj_C Activator 1 40 kDa subu 98.1 3.1E-05 1.1E-09 82.0 14.6 178 146-350 25-208 (340)
190 4fs7_A Uncharacterized protein 98.1 3.6E-05 1.2E-09 83.4 15.3 37 516-559 66-102 (394)
191 1l8q_A Chromosomal replication 98.1 2.1E-05 7.1E-10 82.8 12.5 175 146-348 11-202 (324)
192 3d8b_A Fidgetin-like protein 1 98.0 2.4E-05 8.1E-10 83.4 12.6 181 146-355 84-296 (357)
193 2qp9_X Vacuolar protein sortin 98.0 3.4E-05 1.2E-09 82.1 13.6 181 146-354 51-261 (355)
194 1io0_A Tropomodulin; LRR prote 98.0 3.1E-06 1.1E-10 81.1 4.0 122 516-639 31-164 (185)
195 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00013 4.5E-09 76.4 16.6 182 146-354 12-223 (322)
196 3ec2_A DNA replication protein 98.0 1.4E-05 4.9E-10 76.0 8.5 120 151-291 19-142 (180)
197 3vfd_A Spastin; ATPase, microt 98.0 0.00012 3.9E-09 79.2 16.0 181 146-354 115-326 (389)
198 1in4_A RUVB, holliday junction 97.9 0.00061 2.1E-08 71.7 20.8 172 146-353 25-222 (334)
199 2w58_A DNAI, primosome compone 97.9 8.8E-06 3E-10 79.2 5.9 124 146-291 25-158 (202)
200 3co5_A Putative two-component 97.9 1.2E-05 4.3E-10 73.2 6.4 110 146-290 4-114 (143)
201 1io0_A Tropomodulin; LRR prote 97.9 4.4E-06 1.5E-10 80.0 3.4 100 539-639 25-136 (185)
202 4gt6_A Cell surface protein; l 97.9 0.00023 8E-09 77.0 17.4 80 677-772 285-366 (394)
203 4fs7_A Uncharacterized protein 97.9 9E-05 3.1E-09 80.2 14.0 214 515-771 156-374 (394)
204 3rw6_A Nuclear RNA export fact 97.9 6E-06 2.1E-10 83.3 3.7 80 550-632 169-257 (267)
205 2zan_A Vacuolar protein sortin 97.8 0.00032 1.1E-08 76.9 17.1 182 146-354 134-345 (444)
206 3pxg_A Negative regulator of g 97.8 5.7E-05 1.9E-09 83.5 10.4 143 146-320 180-338 (468)
207 2bjv_A PSP operon transcriptio 97.8 5.5E-05 1.9E-09 77.0 9.5 134 146-291 6-150 (265)
208 4fcw_A Chaperone protein CLPB; 97.8 6.3E-05 2.2E-09 78.5 9.6 122 146-278 17-145 (311)
209 2gno_A DNA polymerase III, gam 97.7 0.00015 5.1E-09 75.0 11.8 148 150-320 1-152 (305)
210 1ojl_A Transcriptional regulat 97.7 8.7E-05 3E-09 77.0 9.7 159 146-317 2-187 (304)
211 1qvr_A CLPB protein; coiled co 97.7 4.6E-05 1.6E-09 91.0 8.5 150 146-319 170-344 (854)
212 3cf0_A Transitional endoplasmi 97.7 0.00046 1.6E-08 71.5 15.0 151 146-320 15-199 (301)
213 2c9o_A RUVB-like 1; hexameric 97.6 0.00046 1.6E-08 76.0 13.8 93 255-353 298-409 (456)
214 4gt6_A Cell surface protein; l 97.6 0.0016 5.5E-08 70.2 17.4 82 676-771 261-342 (394)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.00037 1.3E-08 70.4 10.9 151 146-320 12-195 (257)
216 3rw6_A Nuclear RNA export fact 97.5 2.4E-05 8.3E-10 78.8 2.0 43 599-641 167-211 (267)
217 4h09_A Hypothetical leucine ri 97.5 0.0036 1.2E-07 67.1 19.3 120 498-635 46-167 (379)
218 3e4g_A ATP synthase subunit S, 97.5 2.4E-05 8.4E-10 73.0 1.6 68 677-754 82-155 (176)
219 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00056 1.9E-08 80.7 13.6 154 146-320 186-362 (758)
220 4b4t_J 26S protease regulatory 97.5 0.00038 1.3E-08 73.8 10.7 173 146-347 148-354 (405)
221 1ofh_A ATP-dependent HSL prote 97.5 0.0004 1.4E-08 72.3 10.6 46 146-191 15-72 (310)
222 4b4t_K 26S protease regulatory 97.5 0.00042 1.4E-08 74.5 10.9 46 146-191 172-228 (428)
223 3pxi_A Negative regulator of g 97.4 0.00029 1E-08 83.0 10.4 145 146-320 180-338 (758)
224 3pxi_A Negative regulator of g 97.4 0.00027 9.3E-09 83.3 9.9 150 146-320 491-675 (758)
225 4b4t_L 26S protease subunit RP 97.4 0.00076 2.6E-08 72.7 12.4 173 146-347 181-387 (437)
226 3hu3_A Transitional endoplasmi 97.4 0.00036 1.2E-08 77.1 10.0 179 146-353 204-414 (489)
227 4b4t_H 26S protease regulatory 97.4 0.00053 1.8E-08 73.7 10.0 172 146-346 209-414 (467)
228 2r44_A Uncharacterized protein 97.4 0.00027 9.1E-09 74.5 7.7 149 146-320 27-198 (331)
229 2cvh_A DNA repair and recombin 97.3 0.0013 4.4E-08 64.4 11.6 89 168-262 19-115 (220)
230 2kjq_A DNAA-related protein; s 97.3 0.00016 5.4E-09 66.2 4.3 25 168-192 35-59 (149)
231 4b4t_M 26S protease regulatory 97.3 0.00062 2.1E-08 73.3 9.5 171 146-346 181-386 (434)
232 2ce7_A Cell division protein F 97.3 0.00078 2.7E-08 73.8 10.5 173 146-347 16-221 (476)
233 2r62_A Cell division protease 97.2 8.7E-05 3E-09 75.6 1.5 46 146-191 11-66 (268)
234 4b4t_I 26S protease regulatory 97.1 0.0022 7.6E-08 68.2 11.6 172 146-346 182-387 (437)
235 2qgz_A Helicase loader, putati 97.1 0.00031 1.1E-08 72.9 5.0 53 153-207 135-189 (308)
236 4h09_A Hypothetical leucine ri 97.1 0.015 5.2E-07 62.1 17.7 78 678-770 261-340 (379)
237 1qvr_A CLPB protein; coiled co 96.9 0.002 7E-08 76.8 10.5 134 147-291 559-710 (854)
238 1um8_A ATP-dependent CLP prote 96.9 0.0024 8.1E-08 68.4 9.8 46 146-191 21-94 (376)
239 3cf2_A TER ATPase, transitiona 96.9 0.0026 8.8E-08 73.8 10.4 173 146-347 204-407 (806)
240 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0011 3.9E-08 78.0 7.7 129 146-291 458-607 (758)
241 2x8a_A Nuclear valosin-contain 96.8 0.013 4.4E-07 59.4 13.5 150 146-320 10-191 (274)
242 1g8p_A Magnesium-chelatase 38 96.8 0.0027 9.2E-08 67.2 8.8 44 146-191 24-67 (350)
243 3t15_A Ribulose bisphosphate c 96.7 0.0027 9.2E-08 65.3 8.1 24 168-191 35-58 (293)
244 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0076 2.6E-07 66.3 12.0 147 146-320 31-214 (499)
245 3m6a_A ATP-dependent protease 96.7 0.0021 7E-08 72.3 7.4 46 146-191 81-130 (543)
246 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0013 4.3E-08 67.4 4.6 69 168-262 122-192 (331)
247 2b8t_A Thymidine kinase; deoxy 96.6 0.0015 5.1E-08 63.8 4.9 116 168-293 11-127 (223)
248 1ixz_A ATP-dependent metallopr 96.6 0.0034 1.2E-07 63.1 7.2 47 146-192 16-72 (254)
249 3hr8_A Protein RECA; alpha and 96.5 0.0051 1.7E-07 64.5 8.5 88 168-262 60-149 (356)
250 1ypw_A Transitional endoplasmi 96.5 0.0076 2.6E-07 71.0 10.7 151 146-320 204-385 (806)
251 3io5_A Recombination and repai 96.4 0.0078 2.7E-07 61.3 8.7 86 170-262 29-121 (333)
252 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.0078 2.7E-07 66.3 8.5 43 146-192 22-64 (500)
253 1xp8_A RECA protein, recombina 96.3 0.01 3.6E-07 62.6 9.2 87 168-261 73-161 (366)
254 1jr3_D DNA polymerase III, del 96.2 0.096 3.3E-06 54.9 16.5 163 158-352 9-183 (343)
255 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.014 4.8E-07 57.4 9.1 120 168-292 22-168 (235)
256 2zr9_A Protein RECA, recombina 96.2 0.011 3.8E-07 62.1 8.7 88 168-262 60-149 (349)
257 2z43_A DNA repair and recombin 96.2 0.015 5E-07 60.7 9.6 93 168-261 106-212 (324)
258 3lw7_A Adenylate kinase relate 96.1 0.046 1.6E-06 50.8 12.2 20 170-189 2-21 (179)
259 1n0w_A DNA repair protein RAD5 96.1 0.0088 3E-07 59.4 7.1 94 168-262 23-129 (243)
260 1v5w_A DMC1, meiotic recombina 96.1 0.019 6.4E-07 60.4 9.9 57 168-225 121-181 (343)
261 1u94_A RECA protein, recombina 96.0 0.013 4.4E-07 61.7 8.3 87 168-261 62-150 (356)
262 1rz3_A Hypothetical protein rb 95.9 0.0069 2.4E-07 58.3 5.0 41 151-191 3-44 (201)
263 1vma_A Cell division protein F 95.8 0.025 8.7E-07 58.0 9.4 90 168-261 103-195 (306)
264 2i1q_A DNA repair and recombin 95.8 0.01 3.5E-07 61.9 6.5 93 168-261 97-213 (322)
265 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0087 3E-07 56.8 5.1 118 518-637 38-168 (197)
266 3c8u_A Fructokinase; YP_612366 95.8 0.0063 2.2E-07 59.0 4.2 38 154-191 7-44 (208)
267 2pze_A Cystic fibrosis transme 95.7 0.11 3.8E-06 50.8 13.0 25 168-192 33-57 (229)
268 1g5t_A COB(I)alamin adenosyltr 95.7 0.0082 2.8E-07 56.8 4.4 121 169-293 28-164 (196)
269 2cbz_A Multidrug resistance-as 95.6 0.046 1.6E-06 54.0 9.9 25 168-192 30-54 (237)
270 1odf_A YGR205W, hypothetical 3 95.6 0.058 2E-06 55.0 10.8 25 168-192 30-54 (290)
271 2px0_A Flagellar biosynthesis 95.4 0.028 9.6E-07 57.5 7.8 24 168-191 104-127 (296)
272 2pjz_A Hypothetical protein ST 95.4 0.077 2.6E-06 53.2 10.8 22 170-191 31-52 (263)
273 3kl4_A SRP54, signal recogniti 95.3 0.078 2.7E-06 57.0 11.1 24 168-191 96-119 (433)
274 1nlf_A Regulatory protein REPA 95.3 0.042 1.4E-06 55.8 8.7 24 168-191 29-52 (279)
275 2orw_A Thymidine kinase; TMTK, 95.2 0.0065 2.2E-07 57.5 2.1 110 170-292 4-113 (184)
276 3hws_A ATP-dependent CLP prote 95.2 0.013 4.4E-07 62.3 4.5 46 146-191 15-73 (363)
277 3dm5_A SRP54, signal recogniti 95.2 0.053 1.8E-06 58.3 9.2 24 168-191 99-122 (443)
278 3e70_C DPA, signal recognition 95.1 0.062 2.1E-06 55.7 9.4 24 168-191 128-151 (328)
279 1pzn_A RAD51, DNA repair and r 95.1 0.029 1E-06 59.0 6.8 49 168-216 130-182 (349)
280 1qhx_A CPT, protein (chloramph 94.9 0.011 3.8E-07 55.4 2.9 22 170-191 4-25 (178)
281 2r6a_A DNAB helicase, replicat 94.9 0.74 2.5E-05 50.1 17.9 52 168-222 202-253 (454)
282 3lda_A DNA repair protein RAD5 94.9 0.061 2.1E-06 57.4 8.7 58 168-226 177-238 (400)
283 1zp6_A Hypothetical protein AT 94.9 0.013 4.4E-07 55.7 3.3 25 168-192 8-32 (191)
284 2yhs_A FTSY, cell division pro 94.9 0.097 3.3E-06 56.9 10.3 42 168-212 292-333 (503)
285 3kb2_A SPBC2 prophage-derived 94.9 0.012 4.1E-07 54.8 2.9 22 170-191 2-23 (173)
286 3vaa_A Shikimate kinase, SK; s 94.8 0.014 4.9E-07 56.0 3.1 24 168-191 24-47 (199)
287 1kgd_A CASK, peripheral plasma 94.7 0.016 5.5E-07 54.6 3.4 23 169-191 5-27 (180)
288 3bh0_A DNAB-like replicative h 94.7 0.34 1.2E-05 49.9 13.8 53 168-224 67-119 (315)
289 3tui_C Methionine import ATP-b 94.7 0.11 3.7E-06 54.4 9.8 133 168-300 53-232 (366)
290 1sky_E F1-ATPase, F1-ATP synth 94.6 0.065 2.2E-06 57.8 8.1 61 158-221 141-203 (473)
291 1kag_A SKI, shikimate kinase I 94.6 0.014 4.7E-07 54.5 2.5 22 170-191 5-26 (173)
292 1ly1_A Polynucleotide kinase; 94.6 0.015 5.1E-07 54.6 2.7 22 170-191 3-24 (181)
293 3ice_A Transcription terminati 94.5 0.045 1.5E-06 57.2 6.2 52 157-211 163-216 (422)
294 4a1f_A DNAB helicase, replicat 94.5 0.15 5E-06 53.0 10.1 54 168-225 45-98 (338)
295 3trf_A Shikimate kinase, SK; a 94.4 0.018 6E-07 54.4 2.9 23 169-191 5-27 (185)
296 3uie_A Adenylyl-sulfate kinase 94.4 0.021 7E-07 54.9 3.3 24 168-191 24-47 (200)
297 1pgv_A TMD-1, tropomodulin TMD 94.4 0.061 2.1E-06 51.0 6.5 71 541-612 32-108 (197)
298 2xxa_A Signal recognition part 94.4 0.14 4.8E-06 55.2 10.1 24 168-191 99-122 (433)
299 3jvv_A Twitching mobility prot 94.3 0.085 2.9E-06 55.4 8.1 111 168-295 122-234 (356)
300 4gp7_A Metallophosphoesterase; 94.3 0.021 7.3E-07 53.2 3.2 24 168-191 8-31 (171)
301 3tr0_A Guanylate kinase, GMP k 94.3 0.022 7.6E-07 54.7 3.4 23 169-191 7-29 (205)
302 4eun_A Thermoresistant glucoki 94.3 0.023 7.7E-07 54.6 3.4 24 168-191 28-51 (200)
303 3tqc_A Pantothenate kinase; bi 94.3 0.03 1E-06 57.8 4.4 44 148-191 69-114 (321)
304 1ex7_A Guanylate kinase; subst 94.3 0.018 6.1E-07 54.4 2.5 22 170-191 2-23 (186)
305 3t61_A Gluconokinase; PSI-biol 94.2 0.017 5.7E-07 55.6 2.3 23 169-191 18-40 (202)
306 3a00_A Guanylate kinase, GMP k 94.2 0.02 6.8E-07 54.2 2.7 22 170-191 2-23 (186)
307 1knq_A Gluconate kinase; ALFA/ 94.2 0.025 8.6E-07 52.8 3.3 24 168-191 7-30 (175)
308 1v43_A Sugar-binding transport 94.1 0.18 6E-06 53.2 10.1 133 168-300 36-210 (372)
309 1j8m_F SRP54, signal recogniti 94.1 0.16 5.3E-06 52.0 9.4 90 169-261 98-189 (297)
310 2bdt_A BH3686; alpha-beta prot 94.1 0.024 8.2E-07 53.8 3.0 22 170-191 3-24 (189)
311 3tau_A Guanylate kinase, GMP k 94.1 0.027 9.1E-07 54.5 3.4 25 168-192 7-31 (208)
312 1ye8_A Protein THEP1, hypothet 94.1 0.026 8.8E-07 53.0 3.2 22 171-192 2-23 (178)
313 1ls1_A Signal recognition part 94.1 0.12 4E-06 52.9 8.4 24 169-192 98-121 (295)
314 3iij_A Coilin-interacting nucl 94.1 0.021 7.3E-07 53.6 2.6 24 168-191 10-33 (180)
315 2ga8_A Hypothetical 39.9 kDa p 94.1 0.024 8.1E-07 58.9 3.1 43 149-191 2-46 (359)
316 1iy2_A ATP-dependent metallopr 94.1 0.03 1E-06 56.9 3.9 47 146-192 40-96 (278)
317 2qor_A Guanylate kinase; phosp 94.0 0.021 7.1E-07 55.0 2.5 24 168-191 11-34 (204)
318 1zuh_A Shikimate kinase; alpha 94.0 0.024 8.3E-07 52.6 2.9 24 168-191 6-29 (168)
319 4akg_A Glutathione S-transfera 94.0 0.44 1.5E-05 62.7 15.2 137 170-320 1268-1431(2695)
320 2rhm_A Putative kinase; P-loop 94.0 0.025 8.4E-07 53.8 3.0 24 168-191 4-27 (193)
321 1kht_A Adenylate kinase; phosp 94.0 0.024 8.1E-07 53.8 2.8 22 170-191 4-25 (192)
322 3asz_A Uridine kinase; cytidin 94.0 0.027 9.2E-07 54.5 3.3 24 168-191 5-28 (211)
323 2j41_A Guanylate kinase; GMP, 94.0 0.028 9.7E-07 54.0 3.4 24 169-192 6-29 (207)
324 2qt1_A Nicotinamide riboside k 94.0 0.028 9.6E-07 54.2 3.3 25 168-192 20-44 (207)
325 2ck3_D ATP synthase subunit be 94.0 0.17 5.7E-06 54.6 9.5 64 158-223 143-207 (482)
326 2hf9_A Probable hydrogenase ni 94.0 0.034 1.2E-06 54.3 4.0 38 153-192 24-61 (226)
327 1nks_A Adenylate kinase; therm 94.0 0.023 7.9E-07 53.9 2.7 22 170-191 2-23 (194)
328 2if2_A Dephospho-COA kinase; a 94.0 0.024 8.3E-07 54.5 2.8 22 170-191 2-23 (204)
329 1gvn_B Zeta; postsegregational 93.9 0.04 1.4E-06 56.1 4.6 24 168-191 32-55 (287)
330 3rfe_A Platelet glycoprotein I 93.9 0.098 3.4E-06 46.1 6.5 52 583-637 12-66 (130)
331 1y63_A LMAJ004144AAA protein; 93.9 0.029 9.8E-07 53.0 3.1 24 168-191 9-32 (184)
332 1via_A Shikimate kinase; struc 93.9 0.022 7.6E-07 53.3 2.3 22 170-191 5-26 (175)
333 1jjv_A Dephospho-COA kinase; P 93.9 0.029 9.9E-07 54.0 3.2 22 170-191 3-24 (206)
334 1uj2_A Uridine-cytidine kinase 93.8 0.028 9.5E-07 56.2 3.0 24 168-191 21-44 (252)
335 2plr_A DTMP kinase, probable t 93.8 0.062 2.1E-06 51.8 5.5 22 170-191 5-26 (213)
336 1cke_A CK, MSSA, protein (cyti 93.8 0.028 9.7E-07 55.0 3.0 22 170-191 6-27 (227)
337 2p5t_B PEZT; postsegregational 93.8 0.04 1.4E-06 55.1 4.1 39 153-191 13-54 (253)
338 1lvg_A Guanylate kinase, GMP k 93.8 0.026 8.8E-07 54.1 2.6 23 169-191 4-26 (198)
339 2ze6_A Isopentenyl transferase 93.8 0.026 9E-07 56.4 2.7 22 170-191 2-23 (253)
340 2jaq_A Deoxyguanosine kinase; 93.8 0.028 9.6E-07 53.9 2.8 21 171-191 2-22 (205)
341 2c95_A Adenylate kinase 1; tra 93.8 0.03 1E-06 53.3 3.1 24 168-191 8-31 (196)
342 2yvu_A Probable adenylyl-sulfa 93.7 0.047 1.6E-06 51.5 4.3 25 168-192 12-36 (186)
343 4a74_A DNA repair and recombin 93.7 0.076 2.6E-06 51.9 6.0 46 168-213 24-73 (231)
344 3tlx_A Adenylate kinase 2; str 93.7 0.037 1.3E-06 54.9 3.6 24 168-191 28-51 (243)
345 1tev_A UMP-CMP kinase; ploop, 93.7 0.03 1E-06 53.2 2.9 23 169-191 3-25 (196)
346 2iyv_A Shikimate kinase, SK; t 93.7 0.024 8.1E-07 53.5 2.1 22 170-191 3-24 (184)
347 2bbw_A Adenylate kinase 4, AK4 93.7 0.035 1.2E-06 55.2 3.4 24 168-191 26-49 (246)
348 2wsm_A Hydrogenase expression/ 93.6 0.036 1.2E-06 53.9 3.4 41 150-192 13-53 (221)
349 1xjc_A MOBB protein homolog; s 93.6 0.054 1.8E-06 50.1 4.3 24 168-191 3-26 (169)
350 2j37_W Signal recognition part 93.6 0.26 8.7E-06 54.2 10.4 24 168-191 100-123 (504)
351 3rfe_A Platelet glycoprotein I 93.6 0.09 3.1E-06 46.3 5.6 53 555-614 12-67 (130)
352 1znw_A Guanylate kinase, GMP k 93.6 0.038 1.3E-06 53.3 3.4 24 168-191 19-42 (207)
353 3ney_A 55 kDa erythrocyte memb 93.6 0.039 1.3E-06 52.4 3.4 24 168-191 18-41 (197)
354 1uf9_A TT1252 protein; P-loop, 93.5 0.034 1.2E-06 53.3 2.9 24 168-191 7-30 (203)
355 1tue_A Replication protein E1; 93.5 0.056 1.9E-06 51.3 4.3 36 155-191 45-80 (212)
356 3upu_A ATP-dependent DNA helic 93.5 0.15 5E-06 56.0 8.3 37 153-192 32-68 (459)
357 2bwj_A Adenylate kinase 5; pho 93.5 0.035 1.2E-06 53.0 3.0 23 169-191 12-34 (199)
358 1e6c_A Shikimate kinase; phosp 93.4 0.029 1E-06 52.2 2.3 22 170-191 3-24 (173)
359 1ny5_A Transcriptional regulat 93.4 0.9 3.1E-05 48.3 14.2 45 147-191 138-182 (387)
360 1q57_A DNA primase/helicase; d 93.4 0.34 1.2E-05 53.7 11.3 54 168-225 241-295 (503)
361 1htw_A HI0065; nucleotide-bind 93.4 0.04 1.4E-06 50.5 3.1 24 168-191 32-55 (158)
362 3fwy_A Light-independent proto 93.4 0.039 1.3E-06 57.0 3.3 39 168-208 47-85 (314)
363 3aez_A Pantothenate kinase; tr 93.4 0.038 1.3E-06 57.0 3.3 24 168-191 89-112 (312)
364 1ukz_A Uridylate kinase; trans 93.4 0.037 1.3E-06 53.1 3.0 24 168-191 14-37 (203)
365 3cm0_A Adenylate kinase; ATP-b 93.4 0.036 1.2E-06 52.3 2.8 23 169-191 4-26 (186)
366 2grj_A Dephospho-COA kinase; T 93.3 0.037 1.3E-06 52.6 2.8 24 168-191 11-34 (192)
367 1z6g_A Guanylate kinase; struc 93.3 0.037 1.3E-06 53.9 2.9 24 168-191 22-45 (218)
368 1fx0_B ATP synthase beta chain 93.3 0.12 4E-06 56.0 6.9 63 158-222 155-218 (498)
369 2jeo_A Uridine-cytidine kinase 93.3 0.043 1.5E-06 54.5 3.3 24 168-191 24-47 (245)
370 2vli_A Antibiotic resistance p 93.2 0.029 9.8E-07 52.8 1.9 23 169-191 5-27 (183)
371 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.039 1.3E-06 55.4 3.0 23 169-191 4-26 (260)
372 2pt5_A Shikimate kinase, SK; a 93.2 0.039 1.3E-06 51.0 2.8 21 171-191 2-22 (168)
373 3cf2_A TER ATPase, transitiona 93.2 0.081 2.8E-06 61.4 5.9 92 146-261 477-579 (806)
374 1g41_A Heat shock protein HSLU 93.2 0.064 2.2E-06 57.8 4.7 46 146-191 15-72 (444)
375 4e22_A Cytidylate kinase; P-lo 93.2 0.046 1.6E-06 54.6 3.4 24 168-191 26-49 (252)
376 2cdn_A Adenylate kinase; phosp 93.1 0.044 1.5E-06 52.5 3.1 24 168-191 19-42 (201)
377 1qf9_A UMP/CMP kinase, protein 93.1 0.04 1.4E-06 52.3 2.7 23 169-191 6-28 (194)
378 2ffh_A Protein (FFH); SRP54, s 93.1 0.24 8.1E-06 53.1 9.0 23 169-191 98-120 (425)
379 2f1r_A Molybdopterin-guanine d 93.1 0.036 1.2E-06 51.5 2.3 23 170-192 3-25 (171)
380 2pbr_A DTMP kinase, thymidylat 93.1 0.042 1.4E-06 52.2 2.9 21 171-191 2-22 (195)
381 1nn5_A Similar to deoxythymidy 93.1 0.064 2.2E-06 51.9 4.2 24 168-191 8-31 (215)
382 2z0h_A DTMP kinase, thymidylat 93.1 0.11 3.8E-06 49.3 5.9 21 171-191 2-22 (197)
383 2ewv_A Twitching motility prot 93.0 0.28 9.7E-06 51.8 9.5 109 168-294 135-246 (372)
384 1s96_A Guanylate kinase, GMP k 93.0 0.051 1.7E-06 52.9 3.4 24 168-191 15-38 (219)
385 2wwf_A Thymidilate kinase, put 93.0 0.047 1.6E-06 52.7 3.1 24 168-191 9-32 (212)
386 3b9q_A Chloroplast SRP recepto 93.0 0.076 2.6E-06 54.4 4.8 24 168-191 99-122 (302)
387 3umf_A Adenylate kinase; rossm 93.0 0.046 1.6E-06 52.9 2.9 24 168-191 28-51 (217)
388 3p32_A Probable GTPase RV1496/ 92.9 0.08 2.7E-06 55.8 5.0 37 155-191 65-101 (355)
389 1zu4_A FTSY; GTPase, signal re 92.9 0.12 4.1E-06 53.4 6.2 24 168-191 104-127 (320)
390 1rj9_A FTSY, signal recognitio 92.9 0.053 1.8E-06 55.7 3.4 24 168-191 101-124 (304)
391 3zvl_A Bifunctional polynucleo 92.9 0.12 4E-06 55.8 6.3 25 168-192 257-281 (416)
392 1cr0_A DNA primase/helicase; R 92.8 0.14 4.9E-06 52.3 6.7 53 168-224 34-87 (296)
393 3cmu_A Protein RECA, recombina 92.8 0.14 4.6E-06 65.0 7.5 87 168-261 1426-1514(2050)
394 3l0o_A Transcription terminati 92.8 0.16 5.4E-06 53.0 6.8 51 157-210 164-216 (427)
395 1gtv_A TMK, thymidylate kinase 92.8 0.03 1E-06 54.2 1.3 22 170-191 1-22 (214)
396 2i3b_A HCR-ntpase, human cance 92.7 0.047 1.6E-06 51.7 2.6 23 170-192 2-24 (189)
397 1zd8_A GTP:AMP phosphotransfer 92.7 0.051 1.7E-06 53.2 2.9 24 168-191 6-29 (227)
398 3llm_A ATP-dependent RNA helic 92.7 0.26 8.9E-06 48.4 8.1 104 155-263 66-187 (235)
399 1aky_A Adenylate kinase; ATP:A 92.7 0.055 1.9E-06 52.7 3.1 23 169-191 4-26 (220)
400 3e1s_A Exodeoxyribonuclease V, 92.7 0.27 9.3E-06 55.2 9.2 115 153-288 192-312 (574)
401 2og2_A Putative signal recogni 92.7 0.092 3.2E-06 55.0 5.0 24 168-191 156-179 (359)
402 2v54_A DTMP kinase, thymidylat 92.6 0.058 2E-06 51.7 3.1 24 169-192 4-27 (204)
403 3gfo_A Cobalt import ATP-bindi 92.6 0.084 2.9E-06 53.3 4.4 24 168-191 33-56 (275)
404 2ehv_A Hypothetical protein PH 92.6 0.062 2.1E-06 53.4 3.4 24 168-191 29-52 (251)
405 2pcj_A ABC transporter, lipopr 92.6 0.058 2E-06 52.7 3.1 24 168-191 29-52 (224)
406 1b0u_A Histidine permease; ABC 92.6 0.087 3E-06 52.8 4.4 24 168-191 31-54 (262)
407 1sq5_A Pantothenate kinase; P- 92.6 0.1 3.6E-06 53.7 5.2 24 168-191 79-102 (308)
408 3lnc_A Guanylate kinase, GMP k 92.6 0.045 1.5E-06 53.8 2.3 24 168-191 26-50 (231)
409 3tif_A Uncharacterized ABC tra 92.6 0.061 2.1E-06 53.0 3.2 24 168-191 30-53 (235)
410 2pez_A Bifunctional 3'-phospho 92.6 0.059 2E-06 50.5 3.0 24 168-191 4-27 (179)
411 3fb4_A Adenylate kinase; psych 92.5 0.056 1.9E-06 52.4 2.8 21 171-191 2-22 (216)
412 2onk_A Molybdate/tungstate ABC 92.4 0.065 2.2E-06 52.9 3.3 23 168-191 24-46 (240)
413 3b85_A Phosphate starvation-in 92.4 0.081 2.8E-06 51.0 3.8 24 169-192 22-45 (208)
414 1np6_A Molybdopterin-guanine d 92.4 0.075 2.6E-06 49.5 3.4 25 168-192 5-29 (174)
415 3nwj_A ATSK2; P loop, shikimat 92.4 0.054 1.8E-06 53.8 2.5 23 169-191 48-70 (250)
416 2f6r_A COA synthase, bifunctio 92.3 0.065 2.2E-06 54.5 3.2 24 168-191 74-97 (281)
417 1vht_A Dephospho-COA kinase; s 92.3 0.07 2.4E-06 51.8 3.3 23 169-191 4-26 (218)
418 3dl0_A Adenylate kinase; phosp 92.3 0.061 2.1E-06 52.1 2.8 21 171-191 2-22 (216)
419 3k1j_A LON protease, ATP-depen 92.3 0.072 2.4E-06 60.7 3.8 43 146-192 41-83 (604)
420 1m7g_A Adenylylsulfate kinase; 92.2 0.067 2.3E-06 51.7 3.0 24 168-191 24-47 (211)
421 1zak_A Adenylate kinase; ATP:A 92.2 0.058 2E-06 52.6 2.6 24 168-191 4-27 (222)
422 3cmw_A Protein RECA, recombina 92.1 0.18 6.2E-06 63.1 7.3 87 168-261 1430-1518(1706)
423 3ake_A Cytidylate kinase; CMP 92.1 0.066 2.3E-06 51.4 2.8 22 170-191 3-24 (208)
424 3cmw_A Protein RECA, recombina 92.1 0.21 7.2E-06 62.5 7.8 89 168-263 382-472 (1706)
425 2q6t_A DNAB replication FORK h 92.1 0.56 1.9E-05 51.0 10.5 55 168-225 199-253 (444)
426 2dr3_A UPF0273 protein PH0284; 92.0 0.11 3.8E-06 51.3 4.4 40 168-209 22-61 (247)
427 1ji0_A ABC transporter; ATP bi 92.0 0.077 2.6E-06 52.4 3.2 24 168-191 31-54 (240)
428 3cmu_A Protein RECA, recombina 92.0 0.23 8E-06 63.0 8.1 88 168-262 382-471 (2050)
429 1sgw_A Putative ABC transporte 92.0 0.066 2.3E-06 51.8 2.6 24 168-191 34-57 (214)
430 2olj_A Amino acid ABC transpor 92.0 0.077 2.6E-06 53.1 3.2 24 168-191 49-72 (263)
431 2eyu_A Twitching motility prot 91.9 0.1 3.5E-06 52.2 4.0 112 168-295 24-136 (261)
432 1g6h_A High-affinity branched- 91.9 0.079 2.7E-06 53.0 3.2 24 168-191 32-55 (257)
433 4g1u_C Hemin import ATP-bindin 91.9 0.078 2.7E-06 53.2 3.1 24 168-191 36-59 (266)
434 3j16_B RLI1P; ribosome recycli 91.9 0.71 2.4E-05 52.1 11.2 132 170-301 379-537 (608)
435 2ff7_A Alpha-hemolysin translo 91.8 0.083 2.8E-06 52.4 3.2 24 168-191 34-57 (247)
436 2d2e_A SUFC protein; ABC-ATPas 91.8 0.083 2.8E-06 52.6 3.2 24 168-191 28-51 (250)
437 3d3q_A TRNA delta(2)-isopenten 91.8 0.08 2.7E-06 54.8 3.0 22 170-191 8-29 (340)
438 3r20_A Cytidylate kinase; stru 91.7 0.085 2.9E-06 51.6 3.1 23 169-191 9-31 (233)
439 1vpl_A ABC transporter, ATP-bi 91.7 0.086 2.9E-06 52.6 3.2 24 168-191 40-63 (256)
440 3b5x_A Lipid A export ATP-bind 91.7 0.65 2.2E-05 52.4 10.8 24 168-191 368-391 (582)
441 1mv5_A LMRA, multidrug resista 91.7 0.086 3E-06 52.2 3.1 24 168-191 27-50 (243)
442 2ghi_A Transport protein; mult 91.6 0.09 3.1E-06 52.6 3.2 25 168-192 45-69 (260)
443 1svm_A Large T antigen; AAA+ f 91.6 0.13 4.6E-06 54.2 4.7 36 156-191 156-191 (377)
444 2zej_A Dardarin, leucine-rich 91.6 0.087 3E-06 49.5 2.9 22 171-192 4-25 (184)
445 2ixe_A Antigen peptide transpo 91.6 0.091 3.1E-06 53.0 3.2 24 168-191 44-67 (271)
446 2zu0_C Probable ATP-dependent 91.6 0.09 3.1E-06 52.9 3.2 25 168-192 45-69 (267)
447 2qi9_C Vitamin B12 import ATP- 91.6 0.092 3.1E-06 52.1 3.2 25 168-192 25-49 (249)
448 2v3c_C SRP54, signal recogniti 91.5 0.1 3.5E-06 56.3 3.7 25 168-192 98-122 (432)
449 2wji_A Ferrous iron transport 91.4 0.1 3.5E-06 48.0 3.2 23 170-192 4-26 (165)
450 2yz2_A Putative ABC transporte 91.4 0.096 3.3E-06 52.6 3.2 24 168-191 32-55 (266)
451 1e4v_A Adenylate kinase; trans 91.4 0.086 3E-06 51.0 2.8 21 171-191 2-22 (214)
452 2nq2_C Hypothetical ABC transp 91.4 0.11 3.6E-06 51.9 3.4 25 168-192 30-54 (253)
453 1oix_A RAS-related protein RAB 91.4 0.097 3.3E-06 49.6 3.0 24 169-192 29-52 (191)
454 1yrb_A ATP(GTP)binding protein 91.3 0.1 3.5E-06 52.2 3.3 24 168-191 13-36 (262)
455 3sr0_A Adenylate kinase; phosp 91.3 0.092 3.2E-06 50.4 2.8 21 171-191 2-22 (206)
456 2ihy_A ABC transporter, ATP-bi 91.3 0.099 3.4E-06 52.9 3.2 25 168-192 46-70 (279)
457 2xb4_A Adenylate kinase; ATP-b 91.3 0.09 3.1E-06 51.3 2.8 21 171-191 2-22 (223)
458 3be4_A Adenylate kinase; malar 91.3 0.09 3.1E-06 51.0 2.7 22 170-191 6-27 (217)
459 4eaq_A DTMP kinase, thymidylat 91.2 0.18 6E-06 49.4 4.8 25 168-192 25-49 (229)
460 3a8t_A Adenylate isopentenyltr 91.2 0.11 3.8E-06 53.6 3.4 24 168-191 39-62 (339)
461 1a7j_A Phosphoribulokinase; tr 91.2 0.055 1.9E-06 55.2 1.1 24 168-191 4-27 (290)
462 2ged_A SR-beta, signal recogni 91.1 0.12 4.2E-06 48.7 3.5 25 168-192 47-71 (193)
463 1ak2_A Adenylate kinase isoenz 91.1 0.11 3.7E-06 51.1 3.1 23 169-191 16-38 (233)
464 3end_A Light-independent proto 91.1 0.18 6.1E-06 51.9 5.0 40 168-209 40-79 (307)
465 2v9p_A Replication protein E1; 91.0 0.18 6E-06 51.6 4.7 24 168-191 125-148 (305)
466 3crm_A TRNA delta(2)-isopenten 91.0 0.098 3.4E-06 53.7 2.7 22 170-191 6-27 (323)
467 3vr4_D V-type sodium ATPase su 90.9 0.17 5.8E-06 54.1 4.6 53 168-222 150-207 (465)
468 3dzd_A Transcriptional regulat 90.9 0.35 1.2E-05 51.1 7.1 46 146-191 129-174 (368)
469 3exa_A TRNA delta(2)-isopenten 90.9 0.11 3.8E-06 52.9 3.0 23 169-191 3-25 (322)
470 3bgw_A DNAB-like replicative h 90.8 1.6 5.3E-05 47.3 12.3 53 168-224 196-248 (444)
471 3nh6_A ATP-binding cassette SU 90.8 0.11 3.7E-06 53.3 2.9 24 168-191 79-102 (306)
472 2iw3_A Elongation factor 3A; a 90.8 1.2 4E-05 52.8 11.9 128 168-301 460-614 (986)
473 2f9l_A RAB11B, member RAS onco 90.7 0.12 4.2E-06 49.1 3.1 23 170-192 6-28 (199)
474 1ltq_A Polynucleotide kinase; 90.7 0.1 3.6E-06 53.4 2.7 22 170-191 3-24 (301)
475 2qe7_A ATP synthase subunit al 90.7 0.28 9.6E-06 53.1 6.1 97 158-261 152-263 (502)
476 1fzq_A ADP-ribosylation factor 90.7 0.18 6.2E-06 47.1 4.2 25 168-192 15-39 (181)
477 1tq4_A IIGP1, interferon-induc 90.7 0.1 3.5E-06 55.8 2.7 24 168-191 68-91 (413)
478 2vp4_A Deoxynucleoside kinase; 90.6 0.11 3.6E-06 51.1 2.6 24 168-191 19-42 (230)
479 2ck3_A ATP synthase subunit al 90.6 0.33 1.1E-05 52.6 6.6 64 158-222 152-222 (510)
480 1u0j_A DNA replication protein 90.6 0.24 8.2E-06 49.2 5.0 37 155-191 90-126 (267)
481 2dyk_A GTP-binding protein; GT 90.6 0.13 4.5E-06 46.7 3.0 23 170-192 2-24 (161)
482 3sop_A Neuronal-specific septi 90.5 0.13 4.3E-06 51.9 3.1 21 171-191 4-24 (270)
483 2r9v_A ATP synthase subunit al 90.5 0.22 7.4E-06 54.0 5.0 60 158-222 165-227 (515)
484 1q3t_A Cytidylate kinase; nucl 90.5 0.15 5.1E-06 50.2 3.6 24 168-191 15-38 (236)
485 2wjg_A FEOB, ferrous iron tran 90.4 0.14 4.9E-06 48.0 3.2 24 169-192 7-30 (188)
486 1xx6_A Thymidine kinase; NESG, 90.4 0.2 7E-06 47.3 4.2 112 168-292 7-118 (191)
487 2ce2_X GTPase HRAS; signaling 90.3 0.13 4.3E-06 46.9 2.7 22 171-192 5-26 (166)
488 2qm8_A GTPase/ATPase; G protei 90.2 0.22 7.5E-06 51.9 4.7 34 158-191 44-77 (337)
489 2p67_A LAO/AO transport system 90.2 0.31 1.1E-05 50.9 5.8 24 168-191 55-78 (341)
490 2bbs_A Cystic fibrosis transme 90.2 0.16 5.3E-06 51.7 3.4 25 168-192 63-87 (290)
491 2qmh_A HPR kinase/phosphorylas 90.1 0.15 5.1E-06 48.1 2.9 24 169-192 34-57 (205)
492 1z2a_A RAS-related protein RAB 90.0 0.14 4.7E-06 46.9 2.7 23 170-192 6-28 (168)
493 2nzj_A GTP-binding protein REM 90.0 0.15 5.1E-06 47.1 2.9 23 170-192 5-27 (175)
494 3foz_A TRNA delta(2)-isopenten 90.0 0.14 4.8E-06 52.0 2.8 24 168-191 9-32 (316)
495 2gj8_A MNME, tRNA modification 89.9 0.15 5.2E-06 47.2 2.9 23 170-192 5-27 (172)
496 3f9v_A Minichromosome maintena 89.9 0.096 3.3E-06 59.3 1.7 47 146-192 295-350 (595)
497 3q72_A GTP-binding protein RAD 89.9 0.15 5.2E-06 46.5 2.8 22 171-192 4-25 (166)
498 3con_A GTPase NRAS; structural 89.9 0.14 4.9E-06 48.1 2.7 23 170-192 22-44 (190)
499 2j9r_A Thymidine kinase; TK1, 89.8 0.57 1.9E-05 44.8 6.8 113 168-293 27-139 (214)
500 3qf4_A ABC transporter, ATP-bi 89.8 1.3 4.3E-05 50.0 10.8 24 168-191 368-391 (587)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.2e-48 Score=441.91 Aligned_cols=311 Identities=17% Similarity=0.216 Sum_probs=252.7
Q ss_pred eecchhHHHHHHHHhCCC-CCCcEEEEEcCCCChHHHHHHHHhc--CcchhccCceeEEEEeCCCC--CHHHHHHHHHHH
Q 044700 149 CGVDEEKEDLVSKLLSSS-TEIPIISILGTEGTGKTTLATLAYN--SYKVMRYFDIRIWVGASADS--DVLSVASSIAEA 223 (795)
Q Consensus 149 vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 223 (795)
|||++++++|.++|.... ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 599999999999997652 2689999999999999999999998 67889999999999999885 899999999999
Q ss_pred hcCCcc--cC-CCCCCChHHHHHHHHHhcCCC-eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhC
Q 044700 224 LGASAS--AF-SSQGQELEPYLRYIRKSIARN-RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIG 299 (795)
Q Consensus 224 l~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~ 299 (795)
++.... .. .....+.+++...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcC
Confidence 987632 11 112335567889999999996 9999999999853222332 27999999999999998875
Q ss_pred Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhcccc
Q 044700 300 ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQV 376 (795)
Q Consensus 300 ~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~~ 376 (795)
.. |+|++|+.++||+||.+.||.... ++.+.+++++|+++|+|+||||+++|+.|+.+.. +|...+.+..+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 22 999999999999999999976532 4677889999999999999999999999987742 3334444333322
Q ss_pred ccccccccceeeeccCCChHHHHHHhh-----------hhcccCCCcccChhHHHHHHHHc--CCCCh-------hhhhh
Q 044700 377 QYIERHHFVPLWLSFTDMPFAVRMCFL-----------YCAIFPKDYLINKDELIRSWMAQ--GYVHK-------EAVGQ 436 (795)
Q Consensus 377 ~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~W~a~--g~i~~-------~~~~~ 436 (795)
....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. +++++
T Consensus 359 --~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred --cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 3457999999999999999999999 999999999999 8999999 88862 56677
Q ss_pred HHHHHHHHcccccccccccCCCCCcEEeeccCHHHHHHHHHHhhcccc
Q 044700 437 MCFDQMVARSWFQKFEFEEDDDDGRILRCKMPVQVHKFVRFLAQNYCA 484 (795)
Q Consensus 437 ~~~~~L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~~~~~~~~~~ 484 (795)
||++|+++||++.... +...+|+|||+||++|+.++.++++
T Consensus 433 -~l~~L~~rsLl~~~~~------~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKR------MPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHTTTBSSCSEEEC------SSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHHHHcCCeeEecC------CCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999999998721 1223459999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-39 Score=373.86 Aligned_cols=286 Identities=18% Similarity=0.194 Sum_probs=229.4
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCce-eEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDI-RIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998743 5899999999999999999999988788999985 999999999999888888887654
Q ss_pred CCcccCCCC-------CCChHHHHHHHHHhc---CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHH
Q 044700 226 ASASAFSSQ-------GQELEPYLRYIRKSI---ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIA 295 (795)
Q Consensus 226 ~~~~~~~~~-------~~~~~~~~~~l~~~l---~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (795)
......... ..+.+++...+++.+ .++|+||||||||+ .+.|+.+ + .||+||||||++.++
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCSHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccChHHH
Confidence 321100000 113345566677655 78999999999997 3566654 2 799999999999998
Q ss_pred HhhCC--cccCC------CCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCC--CHHHH
Q 044700 296 DKIGS--TENIR------RASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFK--TEKEW 365 (795)
Q Consensus 296 ~~~~~--~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~--~~~~w 365 (795)
..+.. .++++ +|+.+|||+||.+. ++.. ..++..+| |+|+||||+++|+.|+.+ +..+|
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 64432 26666 99999999999988 3322 12233333 999999999999999987 78888
Q ss_pred HHHHhhhccccccccccccceeeeccCCChHHH-HHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHH
Q 044700 366 QSILDSKMWQVQYIERHHFVPLWLSFTDMPFAV-RMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVA 444 (795)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~ 444 (795)
... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|++
T Consensus 348 ~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L~eLvd 413 (1221)
T 1vt4_I 348 KHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHK 413 (1221)
T ss_dssp HHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHHHHHHT
T ss_pred hcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----HHHHHHHHHHHHh
Confidence 763 13468899999999999999 99999999999999999999999999987 3568899999999
Q ss_pred cccccccccccCCCCCcEEeeccCHHHHHHH
Q 044700 445 RSWFQKFEFEEDDDDGRILRCKMPVQVHKFV 475 (795)
Q Consensus 445 ~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~ 475 (795)
+||++.. .....| +|||++++++
T Consensus 414 RSLLq~d------~~~~rY--rMHDLllELr 436 (1221)
T 1vt4_I 414 YSLVEKQ------PKESTI--SIPSIYLELK 436 (1221)
T ss_dssp SSSSSBC------SSSSEE--BCCCHHHHHH
T ss_pred hCCEEEe------CCCCEE--EehHHHHHHh
Confidence 9999974 134456 9999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-38 Score=396.45 Aligned_cols=311 Identities=18% Similarity=0.228 Sum_probs=249.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch-hccC-ceeEEEEeCCCCC--HHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV-MRYF-DIRIWVGASADSD--VLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~ 221 (795)
..||||++++++|.++|.......++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 67999999999999999866557899999999999999999999997543 4445 6888999998544 445577788
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcCCC--eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhh-
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIARN--RFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI- 298 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~- 298 (795)
..+............+.+++...++..+.++ |+||||||||+. .+|. ..++||+||||||++.++..+
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTTTTTTCC
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHHHHHhhc
Confidence 8887655332334567888999999999877 999999999864 2333 336899999999999998543
Q ss_pred CCc--ccCCC-CChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhccc
Q 044700 299 GST--ENIRR-ASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMWQ 375 (795)
Q Consensus 299 ~~~--~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~~ 375 (795)
+.. +++.+ |+.++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|...++.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 322 88885 99999999999988432 234456799999999999999999999998773 3566666543211
Q ss_pred c----c----cccccccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHHccc
Q 044700 376 V----Q----YIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVARSW 447 (795)
Q Consensus 376 ~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~~sl 447 (795)
. . .....+..+|.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----TEEVEDILQEFVNKSL 423 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHHHHTTS
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----HHHHHHHHHHHHhccc
Confidence 1 1 1114588899999999999999999999999999999999999999876 6788999999999999
Q ss_pred ccccccccCCCCCcEEeeccCHHHHHHHHHHhhcc
Q 044700 448 FQKFEFEEDDDDGRILRCKMPVQVHKFVRFLAQNY 482 (795)
Q Consensus 448 l~~~~~~~~~~~~~~~~c~mHdlv~d~~~~~~~~~ 482 (795)
++... +++...|+||+++|++++..+.++
T Consensus 424 ~~~~~------~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNR------NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEE------SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEec------CCCceEEEecHHHHHHHHhhhhHH
Confidence 99751 334334599999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=343.63 Aligned_cols=307 Identities=18% Similarity=0.220 Sum_probs=236.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch-hccC-ceeEEEEeCCCCCHHHHHHH---H
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV-MRYF-DIRIWVGASADSDVLSVASS---I 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~---i 220 (795)
..||||+.++++|.++|.......++|+|+||||+||||||+++|++.++ ..+| ++++|++++.. +...++.. +
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 68999999999999999865446899999999999999999999997666 7889 58999999876 33344444 3
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcCC--CeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhh
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIAR--NRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKI 298 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~ 298 (795)
+..++...........+.+.....+...+.+ +++||||||+|+. ..+ .....|++||||||+..++..+
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l-------~~l~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL-------KAFDSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH-------HTTCSSCEEEEEESCGGGGTTC
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH-------HHhcCCCeEEEECCCcHHHHhc
Confidence 4455432111111445667788888888876 7899999999863 222 2236789999999999988765
Q ss_pred CCc-ccC---CCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHhhhcc
Q 044700 299 GST-ENI---RRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLHFKTEKEWQSILDSKMW 374 (795)
Q Consensus 299 ~~~-~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~~~~~~~w~~~l~~~~~ 374 (795)
... +++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+ ...|..+++....
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQN 347 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHS
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 433 444 5899999999999988531 12334678999999999999999999999876 2368777664322
Q ss_pred cc--------ccccccccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCChhhhhhHHHHHHHHcc
Q 044700 375 QV--------QYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVHKEAVGQMCFDQMVARS 446 (795)
Q Consensus 375 ~~--------~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~L~~~s 446 (795)
.. ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+..++++|+++|
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----TEEVEDILQEFVNKS 422 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHHHHTT
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----HHHHHHHHHHHHhCc
Confidence 11 11224677889999999999999999999999999999999999999765 456788999999999
Q ss_pred cccccccccCCCCCcEEeeccCHHHHHHHHHHh
Q 044700 447 WFQKFEFEEDDDDGRILRCKMPVQVHKFVRFLA 479 (795)
Q Consensus 447 ll~~~~~~~~~~~~~~~~c~mHdlv~d~~~~~~ 479 (795)
|++.. . ++....|+||++++++++...
T Consensus 423 Ll~~~--~----~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 423 LLFCD--R----NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SSEEE--E----ETTEEEEECCHHHHHHHHHHT
T ss_pred CeEEe--c----CCCccEEEEcHHHHHHHHhhh
Confidence 99865 1 233334599999999998874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.8e-23 Score=220.40 Aligned_cols=221 Identities=21% Similarity=0.310 Sum_probs=151.8
Q ss_pred CcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCC
Q 044700 521 QNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCG 600 (795)
Q Consensus 521 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~ 600 (795)
++++.|++++|.. . .+|..+.. +++|++|+|++| .+ ..+|..++++++|++|+|++|.++.+|..+++
T Consensus 81 ~~l~~L~L~~n~l-----~-~lp~~l~~-l~~L~~L~L~~n-~l----~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 81 PGRVALELRSVPL-----P-QFPDQAFR-LSHLQHMTIDAA-GL----MELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp TTCCEEEEESSCC-----S-SCCSCGGG-GTTCSEEEEESS-CC----CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred cceeEEEccCCCc-----h-hcChhhhh-CCCCCEEECCCC-Cc----cchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 4566666666542 2 23333445 667777777776 44 46676777777777777777777777777777
Q ss_pred CCcCcEEeccCCCCCCccchhhcc---------CcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCC
Q 044700 601 LWNLQTLELNWCTNLETLPQGMGK---------LINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGST 671 (795)
Q Consensus 601 L~~L~~L~L~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~ 671 (795)
+++|++|++++|+..+.+|..+.. +++|++|++++|.+..+|..++.+++| +.|++++|....
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L--------~~L~L~~N~l~~ 220 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL--------KSLKIRNSPLSA 220 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTC--------CEEEEESSCCCC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCC--------CEEEccCCCCCc
Confidence 777777777777677777766554 777777777777777777777666655 777777777777
Q ss_pred CCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcc
Q 044700 672 FPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEE 750 (795)
Q Consensus 672 lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 750 (795)
+|..+..+++|++|+|++|.+.+.+|. ++.+++|+.|+|++|..+..++ ..+..+++|++|++++|+.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----------~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----------LDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----------TTGGGCTTCCEEECTTCTT
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----------hhhhcCCCCCEEeCCCCCc
Confidence 777777777788888877777766655 7777778888777765444332 2234577777777777777
Q ss_pred cccccccccccccccceeeecCC
Q 044700 751 WGDWECEMANVMPCLCSLSFVYC 773 (795)
Q Consensus 751 l~~~~~~~~~~~p~L~~L~l~~C 773 (795)
+..++..... +++|+.+.+...
T Consensus 290 ~~~iP~~l~~-L~~L~~l~l~~~ 311 (328)
T 4fcg_A 290 LSRLPSLIAQ-LPANCIILVPPH 311 (328)
T ss_dssp CCCCCGGGGG-SCTTCEEECCGG
T ss_pred hhhccHHHhh-ccCceEEeCCHH
Confidence 7766655544 777777766643
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.7e-23 Score=217.98 Aligned_cols=223 Identities=21% Similarity=0.237 Sum_probs=185.3
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
...++.|+|++| .+ ..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..+.++++|+
T Consensus 80 ~~~l~~L~L~~n-~l----~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSV-PL----PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESS-CC----SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCC-Cc----hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCC
Confidence 588999999999 56 68899999999999999999999999999999999999999999 4559999999999999
Q ss_pred eeecCCcc-cccCcccccccccC-CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCe
Q 044700 630 HLLNVGTS-LASMPKEIERLTRL-SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLES 707 (795)
Q Consensus 630 ~L~l~~~~-l~~lp~~i~~L~~L-~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 707 (795)
+|++++|. +..+|..++..... .+..+++|+.|++++|....+|.++..+++|++|+|++|.+....+.++.+++|+.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 99999975 45777766541000 01123455999999999999999999999999999999999876667999999999
Q ss_pred eecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCCC---CC
Q 044700 708 LSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGI---FL 784 (795)
Q Consensus 708 L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~---L~ 784 (795)
|++++|.....+ |..+..+++|++|++++|.....++..... +++|+.|++++|+.++.+|.. |+
T Consensus 234 L~Ls~n~~~~~~-----------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 234 LDLRGCTALRNY-----------PPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp EECTTCTTCCBC-----------CCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred EECcCCcchhhh-----------HHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccHHHhhcc
Confidence 999987654433 334567999999999999888887766555 999999999999999999964 44
Q ss_pred cceecc
Q 044700 785 SQVIKP 790 (795)
Q Consensus 785 ~L~i~~ 790 (795)
+|.+..
T Consensus 302 ~L~~l~ 307 (328)
T 4fcg_A 302 ANCIIL 307 (328)
T ss_dssp TTCEEE
T ss_pred CceEEe
Confidence 444443
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.8e-23 Score=218.97 Aligned_cols=252 Identities=16% Similarity=0.139 Sum_probs=211.6
Q ss_pred cceeEEEEEeeCCCC---CCccccccCcceEEeecc-CCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc
Q 044700 498 VKLSHLFLRVSEGIS---FPVSVSEVQNLRSLRIQY-GSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA 573 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~---~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~ 573 (795)
..++++.+..+.+.. +|..+.++++|++|++++ |. +...+|..+.. +++|++|+|++|... ..+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~-l~~L~~L~Ls~n~l~----~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAK-LTQLHYLYITHTNVS----GAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGG-CTTCSEEEEEEECCE----EECCG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhc-CCCCCEEECcCCeeC----CcCCH
Confidence 579999999998874 688999999999999995 65 45556777888 999999999999433 57888
Q ss_pred ccCCCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCc-ccceeecCCcccc-cCccccccccc
Q 044700 574 EIGNLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLI-NLEHLLNVGTSLA-SMPKEIERLTR 650 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~-~lp~~i~~L~~ 650 (795)
.++++++|++|+|++|.++ .+|..+.++++|++|++++|.....+|..+.+++ +|++|++++|.+. .+|..++.++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 9999999999999999999 7899999999999999999966668999999998 9999999999988 6777777664
Q ss_pred CCCcCCCCcceEEEeccCCCC-CCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCC
Q 044700 651 LSAQPPEYLMRLEIRDYRGST-FPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSG 729 (795)
Q Consensus 651 L~l~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 729 (795)
| +.|++++|.... .|..+..+++|+.|+|++|.+...++.+..+++|++|++++|.....
T Consensus 199 L--------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----------- 259 (313)
T 1ogq_A 199 L--------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT----------- 259 (313)
T ss_dssp C--------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC-----------
T ss_pred c--------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc-----------
Confidence 4 999999987653 56778899999999999999988888899999999999998653222
Q ss_pred CCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 730 IASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 730 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
+|..+..+++|++|++++|.....++.. ..+++|+.|++.+++.+...|.
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEESTTS
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccCCCC
Confidence 3344567999999999998544455543 3499999999999987876653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.1e-22 Score=231.97 Aligned_cols=264 Identities=14% Similarity=0.194 Sum_probs=184.7
Q ss_pred cccceeEEEEEeeCCCC------------------CCcccc--ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeE
Q 044700 496 RRVKLSHLFLRVSEGIS------------------FPVSVS--EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRA 555 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 555 (795)
...+++.|++..+.+.. +|..+. ++++|++|++++|. +...+|..+.. +++|++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~-l~~L~~ 277 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKA-LPEMQL 277 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTT-CSSCCE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhc-CCCCCE
Confidence 45678999999998887 888888 99999999999886 34556677777 899999
Q ss_pred EecCCCCccccccc-ccccccCCC------CCCCeEEcCCCCccccCc--ccCCCCcCcEEeccCCCCCCccchhhccCc
Q 044700 556 LDLSGQSWYENMTI-KIPAEIGNL------EFLRYLNLSLLKIAELPE--ELCGLWNLQTLELNWCTNLETLPQGMGKLI 626 (795)
Q Consensus 556 L~L~~~~~~~~~~~-~lp~~i~~l------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 626 (795)
|+|++|..+. . .+|..++++ ++|++|+|++|.++.+|. .++++++|++|++++|...+.+| .+.+++
T Consensus 278 L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 278 INVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp EECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred EECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 9999984241 3 578777776 899999999999999998 89999999999999886555888 888899
Q ss_pred ccceeecCCcccccCccccccccc-CCCcCCCCcceEEEeccCCCCCCchhhhhc--CccEEEEeCCCCCCCCCC-CC--
Q 044700 627 NLEHLLNVGTSLASMPKEIERLTR-LSAQPPEYLMRLEIRDYRGSTFPSWIDLLS--RLTILSLKDWTNCEQLAP-LG-- 700 (795)
Q Consensus 627 ~L~~L~l~~~~l~~lp~~i~~L~~-L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~--~L~~L~L~~~~~~~~l~~-l~-- 700 (795)
+|++|++++|.+..+|..++.+++ | +.|++++|....+|.++..++ +|++|++++|.+.+..|. ++
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L--------~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQV--------ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTC--------CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCEEECCCCccccccHhhhhhcccC--------cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 999999999988888888887776 6 566666666555555554332 566666666555544332 33
Q ss_pred -----CCCccCeeecccccCceeeCccccC--------------CCCCCCcc--------CCCCCCcceeeecCCccccc
Q 044700 701 -----NLPSLESLSLFSMGSVRKVGNEFLG--------------IKSGIASS--------VTYFPRLKSLKFVNMEEWGD 753 (795)
Q Consensus 701 -----~l~~L~~L~L~~~~~l~~~~~~~~~--------------~~~~~~~~--------~~~~~~L~~L~l~~~~~l~~ 753 (795)
.+++|+.|++++|.. +.++..+.. .. .+|.. ...+++|+.|++++| .+..
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 502 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK 502 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCB
T ss_pred ccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCc
Confidence 444555555554321 111111000 00 11111 122348999999887 4556
Q ss_pred cccccc-ccccccceeeecCCCCCcCCCC
Q 044700 754 WECEMA-NVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 754 ~~~~~~-~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
++.... ..+++|+.|++++| +++.+|.
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~ 530 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYN-SFSKFPT 530 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred cChhhhhccCCCcCEEECCCC-CCCCcCh
Confidence 665544 24899999999999 6777885
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3e-21 Score=216.14 Aligned_cols=264 Identities=14% Similarity=0.089 Sum_probs=182.3
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|++..+.+..+ +..+.++++|++|++++|.. .....+..|.. +++|++|+|++|... ...|..
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----~~~i~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~ 98 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----GLVIRNNTFRG-LSSLIILKLDYNQFL----QLETGA 98 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST----TCEECTTTTTT-CTTCCEEECTTCTTC----EECTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc----cceECcccccc-cccCCEEeCCCCccC----ccChhh
Confidence 457889999999988776 67789999999999999862 12334556777 899999999998432 445778
Q ss_pred cCCCCCCCeEEcCCCCccc-cCcc--cCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccccCc-cccccc-
Q 044700 575 IGNLEFLRYLNLSLLKIAE-LPEE--LCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLASMP-KEIERL- 648 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~L- 648 (795)
++++++|++|+|++|.++. +|.. +.++++|++|++++|......|.. +.++++|++|++++|.+..++ ..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 9999999999999999884 4444 889999999999998655555765 789999999999999877543 223222
Q ss_pred ------------------------------------ccCCCc--------------------------------------
Q 044700 649 ------------------------------------TRLSAQ-------------------------------------- 654 (795)
Q Consensus 649 ------------------------------------~~L~l~-------------------------------------- 654 (795)
+.|.+.
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 111000
Q ss_pred --------------CCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccccCcee
Q 044700 655 --------------PPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSMGSVRK 718 (795)
Q Consensus 655 --------------~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~ 718 (795)
..++|+.|++++|....+ |.++..+++|++|+|++|.+....+ .++++++|+.|+|++|.. +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CC
Confidence 013455555555554433 4556677777777777777766544 377777777777776542 22
Q ss_pred eCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 719 VGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
+. +..+..+++|++|++++| .+..+.......+++|+.|++++| +++.+|.
T Consensus 338 ~~----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 338 ID----------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp EC----------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cC----------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCH
Confidence 21 223446788888888887 444443333334788888888887 6777664
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.8e-21 Score=211.69 Aligned_cols=267 Identities=14% Similarity=0.078 Sum_probs=192.6
Q ss_pred ccceeEEEEEeeCCCCCCcc-ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 497 RVKLSHLFLRVSEGISFPVS-VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
...++.+.+..+.+..+|.. +..+++|++|++++|. +....+..|.. +++|++|+|++|. +. ...|..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~-l~~L~~L~L~~n~-l~---~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAY-AHTIQKLYMGFNA-IR---YLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTT-CTTCCEEECCSSC-CC---CCCTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-----ccccChhhccC-CCCcCEEECCCCC-CC---cCCHHHh
Confidence 46789999999888887665 6789999999999987 44555556777 9999999999994 41 3345668
Q ss_pred CCCCCCCeEEcCCCCccccCcc-cCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcc-cccccccCCC
Q 044700 576 GNLEFLRYLNLSLLKIAELPEE-LCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPK-EIERLTRLSA 653 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~l 653 (795)
+++++|++|+|++|.++.+|.. +.++++|++|++++|......|..+.++++|++|++++|.+..++. .+.+|..|.+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence 9999999999999999999876 4889999999999996555556678999999999999998876542 1222222210
Q ss_pred -----------------------------cCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCC
Q 044700 654 -----------------------------QPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLP 703 (795)
Q Consensus 654 -----------------------------~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 703 (795)
..+++|+.|++++|..... .++..+++|++|+|++|.+....+. +..++
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 1123566666666665544 4677788888888888877765443 77888
Q ss_pred ccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC-CC
Q 044700 704 SLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP-GI 782 (795)
Q Consensus 704 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP-~~ 782 (795)
+|+.|++++|. ++.++ .....+++|++|++++| .+..++..... +++|+.|++++| .++.+| ..
T Consensus 273 ~L~~L~L~~n~-l~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-l~~L~~L~L~~N-~i~~~~~~~ 337 (390)
T 3o6n_A 273 RLERLYISNNR-LVALN-----------LYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENLYLDHN-SIVTLKLST 337 (390)
T ss_dssp SCCEEECCSSC-CCEEE-----------CSSSCCTTCCEEECCSS-CCCCCGGGHHH-HTTCSEEECCSS-CCCCCCCCT
T ss_pred cCCEEECCCCc-CcccC-----------cccCCCCCCCEEECCCC-cceecCccccc-cCcCCEEECCCC-ccceeCchh
Confidence 88888888754 22221 12246889999999987 55555544444 889999999998 577765 23
Q ss_pred CCcceec
Q 044700 783 FLSQVIK 789 (795)
Q Consensus 783 L~~L~i~ 789 (795)
+++|...
T Consensus 338 ~~~L~~L 344 (390)
T 3o6n_A 338 HHTLKNL 344 (390)
T ss_dssp TCCCSEE
T ss_pred hccCCEE
Confidence 4444433
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.3e-21 Score=231.90 Aligned_cols=261 Identities=13% Similarity=0.157 Sum_probs=178.7
Q ss_pred cccceeEEEEEeeCCCC------------------CCcccc--ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeE
Q 044700 496 RRVKLSHLFLRVSEGIS------------------FPVSVS--EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRA 555 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 555 (795)
...+++.|.+..+.+.. +|..+. ++++|++|++++|. ....+|..+.. +++|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~-L~~L~~ 519 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYD-LPELQS 519 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGG-CSSCCE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhC-CCCCCE
Confidence 34678889999888877 788877 89999999998886 34556677777 888999
Q ss_pred EecCCCCccccccc-ccccccCCC-------CCCCeEEcCCCCccccCc--ccCCCCcCcEEeccCCCCCCccchhhccC
Q 044700 556 LDLSGQSWYENMTI-KIPAEIGNL-------EFLRYLNLSLLKIAELPE--ELCGLWNLQTLELNWCTNLETLPQGMGKL 625 (795)
Q Consensus 556 L~L~~~~~~~~~~~-~lp~~i~~l-------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 625 (795)
|+|++|..+. . .+|..++++ ++|++|+|++|.++.+|. .++++++|++|+|++|. +..+| .+.++
T Consensus 520 L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp EECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred EECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 9998884231 2 466655544 488888888888888888 88888888888888884 44888 78888
Q ss_pred cccceeecCCcccccCccccccccc-CCCcCCCCcceEEEeccCCCCCCchhhhhc--CccEEEEeCCCCCCCCCCC---
Q 044700 626 INLEHLLNVGTSLASMPKEIERLTR-LSAQPPEYLMRLEIRDYRGSTFPSWIDLLS--RLTILSLKDWTNCEQLAPL--- 699 (795)
Q Consensus 626 ~~L~~L~l~~~~l~~lp~~i~~L~~-L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~--~L~~L~L~~~~~~~~l~~l--- 699 (795)
++|++|++++|.+..+|..++.+++ | +.|++++|....+|.++..++ +|+.|+|++|.+.+.+|.+
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L--------~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQV--------EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTC--------CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred CcceEEECcCCccccchHHHhhccccC--------CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 8888888888888888887777776 6 666666666555665554433 2666666665554433322
Q ss_pred ---------------------------CCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccc
Q 044700 700 ---------------------------GNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWG 752 (795)
Q Consensus 700 ---------------------------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 752 (795)
..+++|+.|+|++|. +..++...... .......+++|+.|+|++| .+.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~---~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKP---KDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSC---TTSCCTTGGGCCEEECCSS-CCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcc---ccccccccCCccEEECCCC-CCc
Confidence 244455555555432 12222111110 0011224458999999987 566
Q ss_pred ccccccc-ccccccceeeecCCCCCcCCCC
Q 044700 753 DWECEMA-NVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 753 ~~~~~~~-~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
.++.... ..+|+|+.|++++| +++.+|.
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~ 770 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYN-CFSSFPT 770 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred cchHHhhhccCCCcCEEEeCCC-CCCccch
Confidence 6665544 24899999999999 7888884
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.3e-21 Score=231.85 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=102.6
Q ss_pred hhhHHhhhCCeeeEEecCCCCccccccc-----------------ccccccC--CCCCCCeEEcCCCCcc-ccCcccCCC
Q 044700 542 LPKLLDQSRTTLRALDLSGQSWYENMTI-----------------KIPAEIG--NLEFLRYLNLSLLKIA-ELPEELCGL 601 (795)
Q Consensus 542 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~-----------------~lp~~i~--~l~~L~~L~L~~~~l~-~lp~~i~~L 601 (795)
+|..+.. +++|++|+|++|. +. . .+|..++ ++++|++|+|++|.+. .+|..+++|
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~-Ls---g~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSP-FT---YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCC-CC---GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred hhHHHhc-CCCCCEEECcCCc-CC---CCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666777 8889999999884 41 2 2888877 8899999999888755 778888889
Q ss_pred CcCcEEeccCCC-CCC-ccchhhccCc-------ccceeecCCcccccCcc--cccccccC--------------CCcCC
Q 044700 602 WNLQTLELNWCT-NLE-TLPQGMGKLI-------NLEHLLNVGTSLASMPK--EIERLTRL--------------SAQPP 656 (795)
Q Consensus 602 ~~L~~L~L~~~~-~~~-~lp~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L--------------~l~~~ 656 (795)
++|++|+|++|+ ... .+|..+++++ +|++|++++|.+..+|. .++++++| .+..+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L 594 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN 594 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCC
Confidence 999999999886 444 5888777776 88999998888888887 77777766 11122
Q ss_pred CCcceEEEeccCCCCCCchhhhhcC-ccEEEEeCCCCC
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSR-LTILSLKDWTNC 693 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~L~~~~~~ 693 (795)
++|+.|++++|....+|.++..+++ |+.|+|++|.+.
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence 3345555555554445555555554 555555555544
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=7.3e-21 Score=214.29 Aligned_cols=261 Identities=22% Similarity=0.163 Sum_probs=161.5
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA- 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~- 573 (795)
.+..++.|++..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~-l~~L~~L~L~~n-~l----~~~~~~ 98 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNN-LFNLRTLGLRSN-RL----KLIPLG 98 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTT-CTTCCEEECCSS-CC----CSCCTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----cCEeChhhhhC-CccCCEEECCCC-cC----CccCcc
Confidence 456788899888888776 5678889999999998886 45555666777 888999999888 45 45554
Q ss_pred ccCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRL 651 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L 651 (795)
.+.++++|++|+|++|.+..+ |..+.++++|++|++++|......|..+.++++|++|++++|.+..+|.. +..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 467888888888888888865 55788888888888888855555566788888888888888887776643 4444443
Q ss_pred ----------------CCcCCCCcceEEEeccC-CCCCCchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccc
Q 044700 652 ----------------SAQPPEYLMRLEIRDYR-GSTFPSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSM 713 (795)
Q Consensus 652 ----------------~l~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 713 (795)
.+..+++|+.|+++++. ...+|.......+|++|+|++|.+....+ .+..+++|+.|+|++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 12233445555555543 22233333333455555555555443221 2555666666666554
Q ss_pred cCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC
Q 044700 714 GSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP 780 (795)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP 780 (795)
. ++.++. ..+..+++|+.|++.++ .+..+.......+++|+.|++++| +++.+|
T Consensus 259 ~-l~~~~~----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 312 (477)
T 2id5_A 259 P-ISTIEG----------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLE 312 (477)
T ss_dssp C-CCEECT----------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCC
T ss_pred c-CCccCh----------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeC
Confidence 3 222211 11234555666665554 233332222223555666666655 455544
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.9e-21 Score=221.59 Aligned_cols=267 Identities=14% Similarity=0.084 Sum_probs=192.5
Q ss_pred ccceeEEEEEeeCCCCCCcc-ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 497 RVKLSHLFLRVSEGISFPVS-VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
...++.+.+..+.+..+|.. +..+++|++|++++|. +....+..|.. +++|++|+|++|. +. ...|..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~-l~---~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAY-AHTIQKLYMGFNA-IR---YLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTT-CTTCCEEECCSSC-CC---CCCTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcC-CCCCCEEECCCCc-CC---CCCHHHH
Confidence 35677888888777777654 5778999999999886 44555566777 8999999999984 41 3344567
Q ss_pred CCCCCCCeEEcCCCCccccCcc-cCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccCCC
Q 044700 576 GNLEFLRYLNLSLLKIAELPEE-LCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSA 653 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l 653 (795)
+++++|++|+|++|.++.+|.. ++++++|++|+|++|......|..+.++++|++|++++|.+..++.. +.+|..|.+
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence 8999999999999999988876 58899999999999866556666789999999999999988766421 222222210
Q ss_pred -----------------------------cCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCC
Q 044700 654 -----------------------------QPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLP 703 (795)
Q Consensus 654 -----------------------------~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 703 (795)
..+++|+.|++++|.... +.++..+++|+.|+|++|.+.+..|. ++.++
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 112356667777766554 46778888899999998888776554 88889
Q ss_pred ccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC-CC
Q 044700 704 SLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP-GI 782 (795)
Q Consensus 704 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP-~~ 782 (795)
+|+.|+|++|. +..+ +.....+++|+.|++++| .+..++..... +++|+.|++++| .++.+| ..
T Consensus 279 ~L~~L~Ls~N~-l~~l-----------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-l~~L~~L~L~~N-~l~~~~~~~ 343 (597)
T 3oja_B 279 RLERLYISNNR-LVAL-----------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENLYLDHN-SIVTLKLST 343 (597)
T ss_dssp SCCEEECTTSC-CCEE-----------ECSSSCCTTCCEEECCSS-CCCCCGGGHHH-HTTCSEEECCSS-CCCCCCCCT
T ss_pred CCCEEECCCCC-CCCC-----------CcccccCCCCcEEECCCC-CCCccCccccc-CCCCCEEECCCC-CCCCcChhh
Confidence 99999998754 2222 122346889999999997 45566554444 899999999999 577765 23
Q ss_pred CCcceec
Q 044700 783 FLSQVIK 789 (795)
Q Consensus 783 L~~L~i~ 789 (795)
+++|...
T Consensus 344 ~~~L~~L 350 (597)
T 3oja_B 344 HHTLKNL 350 (597)
T ss_dssp TCCCSEE
T ss_pred cCCCCEE
Confidence 4444433
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.1e-21 Score=205.52 Aligned_cols=237 Identities=19% Similarity=0.263 Sum_probs=192.7
Q ss_pred CcceEEeeccCCCcccchhh--hhhhHHhhhCCeeeEEecCC-CCcccccccccccccCCCCCCCeEEcCCCCcc-ccCc
Q 044700 521 QNLRSLRIQYGSKTCSLISE--VLPKLLDQSRTTLRALDLSG-QSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA-ELPE 596 (795)
Q Consensus 521 ~~Lr~L~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~ 596 (795)
.+++.|+++++. +.. .++..+.. +++|++|+|++ |... ..+|..++++++|++|+|++|.++ .+|.
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLAN-LPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGG-CTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhC-CCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 589999999987 344 56677888 99999999995 6333 678999999999999999999998 8899
Q ss_pred ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccccc-cCCCcCCCCcceEEEeccCCC-CCC
Q 044700 597 ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIERLT-RLSAQPPEYLMRLEIRDYRGS-TFP 673 (795)
Q Consensus 597 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~l~~~~~L~~L~l~~~~~~-~lp 673 (795)
.+.++++|++|++++|.....+|..+.++++|++|++++|.+. .+|..++.++ +| +.|++++|... .+|
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L--------~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF--------TSMTISRNRLTGKIP 191 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC--------CEEECCSSEEEEECC
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC--------cEEECcCCeeeccCC
Confidence 9999999999999999766789999999999999999999998 7888888876 55 99999999866 578
Q ss_pred chhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccc
Q 044700 674 SWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWG 752 (795)
Q Consensus 674 ~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 752 (795)
..+..++ |++|++++|.+...++. ++.+++|+.|++++|...... ..+..+++|++|++++|....
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL------------GKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG------------GGCCCCTTCCEEECCSSCCEE
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec------------CcccccCCCCEEECcCCcccC
Confidence 8888887 99999999998876665 899999999999986531111 114568999999999985433
Q ss_pred cccccccccccccceeeecCCCCCc-CCCC--CCCcceecc
Q 044700 753 DWECEMANVMPCLCSLSFVYCPELK-ALPG--IFLSQVIKP 790 (795)
Q Consensus 753 ~~~~~~~~~~p~L~~L~l~~C~~L~-~lP~--~L~~L~i~~ 790 (795)
..+..... +++|+.|++++| +++ .+|. .+++|...+
T Consensus 259 ~~p~~l~~-l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 259 TLPQGLTQ-LKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp CCCGGGGG-CTTCCEEECCSS-EEEEECCCSTTGGGSCGGG
T ss_pred cCChHHhc-CcCCCEEECcCC-cccccCCCCccccccChHH
Confidence 55544444 999999999999 565 5775 244444433
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.5e-21 Score=228.47 Aligned_cols=254 Identities=22% Similarity=0.268 Sum_probs=137.0
Q ss_pred cceeEEEEEeeCCC-CCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGI-SFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
..++.+.+..+.+. .+|..+..+++|++|++++|. +....|..+.. +++|++|++++|... ..+|..++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-----l~~~~p~~l~~-l~~L~~L~L~~n~l~----~~~p~~~~ 463 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-----LSGTIPSSLGS-LSKLRDLKLWLNMLE----GEIPQELM 463 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-----EESCCCGGGGG-CTTCCEEECCSSCCC----SCCCGGGG
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-----ccCcccHHHhc-CCCCCEEECCCCccc----CcCCHHHc
Confidence 34566666555544 235556666666666666654 23334444555 556666666655322 34555555
Q ss_pred CCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccccccCCCc
Q 044700 577 NLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIERLTRLSAQ 654 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~l~ 654 (795)
.+++|++|+|++|.++ .+|..+.++++|++|++++|...+.+|.+++.+++|++|++++|.+. .+|..++.+++|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--- 540 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL--- 540 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC---
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC---
Confidence 5555666666555555 44555555555555555555444455555555555555555555554 445555554444
Q ss_pred CCCCcceEEEeccCCC-CCC------------------------------------------------------------
Q 044700 655 PPEYLMRLEIRDYRGS-TFP------------------------------------------------------------ 673 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~-~lp------------------------------------------------------------ 673 (795)
+.|++++|... .+|
T Consensus 541 -----~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 541 -----IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp -----CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred -----CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 44444433221 122
Q ss_pred ----------chhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcce
Q 044700 674 ----------SWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKS 742 (795)
Q Consensus 674 ----------~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 742 (795)
..+..+++|+.|+|++|.+.+.+|. ++++++|+.|+|++|. +.+ .+|..+..+++|++
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~--------l~g---~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND--------ISG---SIPDEVGDLRGLNI 684 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC--------CCS---CCCGGGGGCTTCCE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc--------cCC---CCChHHhCCCCCCE
Confidence 2223345666667776666665554 6666667777766543 111 33444556666777
Q ss_pred eeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 743 LKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 743 L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
|++++|.-...++..... +++|+.|++++|+--..+|.
T Consensus 685 LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEECCS
T ss_pred EECCCCcccCcCChHHhC-CCCCCEEECcCCcccccCCC
Confidence 777666433344443333 66677777776632223553
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=7e-21 Score=221.31 Aligned_cols=135 Identities=15% Similarity=0.052 Sum_probs=96.4
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|.+..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++|... ...|..
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~ 100 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQS-QHRLDTLVLTANPLI----FMAETA 100 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTCCCS----EECTTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-----cceeChhhccC-ccccCeeeCCCCccc----ccChhh
Confidence 456788888888887776 5678888888888888886 44555666777 888888888888432 344667
Q ss_pred cCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcccccC
Q 044700 575 IGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLASM 641 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~l 641 (795)
++++++|++|++++|.++.+ |..++++++|++|++++|.... ..|. +..+++|++|++++|.+..+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEE
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCccccc
Confidence 77888888888888887776 4567778888888888774333 2233 33477777777777766544
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.9e-20 Score=200.23 Aligned_cols=259 Identities=19% Similarity=0.190 Sum_probs=143.6
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...++++.+..+.+..++. +..+++|++|++++|.. .. ++ .+.. +++|++|++++| .+ ..++. +.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-----~~-~~-~~~~-l~~L~~L~l~~n-~i----~~~~~-~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-----TD-IS-ALQN-LTNLRELYLNED-NI----SDISP-LA 129 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-----CC-CG-GGTT-CTTCSEEECTTS-CC----CCCGG-GT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-----cC-ch-HHcC-CCcCCEEECcCC-cc----cCchh-hc
Confidence 3455555555555554433 55555556665555542 11 11 2344 555666666655 33 33333 55
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCC----
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLS---- 652 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~---- 652 (795)
++++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+..++. +..+++|.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeec
Confidence 5566666666665433333335566666666666653 333333 5666667777776666665543 33333330
Q ss_pred ----------CcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCcc
Q 044700 653 ----------AQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNE 722 (795)
Q Consensus 653 ----------l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 722 (795)
+..+++|+.|++++|....++. +..+++|++|++++|.+.. ++.+..+++|+.|++++|. ++.+
T Consensus 207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~--- 280 (347)
T 4fmz_A 207 YVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDI--- 280 (347)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCC---
T ss_pred ccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCC---
Confidence 2234556666666666665554 5566667777776665544 3456666777777776653 2211
Q ss_pred ccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC--CCCcceecc
Q 044700 723 FLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG--IFLSQVIKP 790 (795)
Q Consensus 723 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~--~L~~L~i~~ 790 (795)
..+..+++|+.|++++|. +..........+|+|+.|++++| .++.+|+ .+++|+..+
T Consensus 281 ---------~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~ 339 (347)
T 4fmz_A 281 ---------SVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSAD 339 (347)
T ss_dssp ---------GGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEES
T ss_pred ---------hhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceee
Confidence 123467888888888874 44333333334889999999998 4766543 344444433
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.4e-20 Score=218.89 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=114.3
Q ss_pred cccceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..++++.+..+.+..++ ..+.++++|++|++++|. +....+..|.. +++|++|+|++|. +. ...|..
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~-l~~L~~L~Ls~n~-l~---~~~p~~ 99 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-----IETIEDKAWHG-LHHLSNLILTGNP-IQ---SFSPGS 99 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTCC-CC---CCCTTS
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-----ccccCHHHhhc-hhhcCEeECCCCc-cc---ccChhh
Confidence 4578999999998887774 478899999999999987 45566777777 9999999999994 41 344788
Q ss_pred cCCCCCCCeEEcCCCCccccC-cccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcccccCc
Q 044700 575 IGNLEFLRYLNLSLLKIAELP-EELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLASMP 642 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp 642 (795)
|+++++|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|.+..++
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 999999999999999998876 689999999999999986544 67999999999999999999877553
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=5.8e-21 Score=222.26 Aligned_cols=256 Identities=17% Similarity=0.224 Sum_probs=176.5
Q ss_pred cceeEEEEEeeCCCCCCc--cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 498 VKLSHLFLRVSEGISFPV--SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
.++++|.+..+.+..+|. .+.++++|++|++++|.. .+.+| .+.. +++|++|+|++| .+ ..+|..+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l-----~g~ip-~~~~-l~~L~~L~L~~N-~l----~~lp~~l 372 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-----EGKLP-AFGS-EIKLASLNLAYN-QI----TEIPANF 372 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC-----EEECC-CCEE-EEEESEEECCSS-EE----EECCTTS
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC-----ccchh-hhCC-CCCCCEEECCCC-cc----ccccHhh
Confidence 567888888888777777 788888888888888763 32344 4555 778888888888 45 5777778
Q ss_pred CCCCC-CCeEEcCCCCccccCcccCCCC--cCcEEeccCCCCCCccchhhc-------cCcccceeecCCcccccCcccc
Q 044700 576 GNLEF-LRYLNLSLLKIAELPEELCGLW--NLQTLELNWCTNLETLPQGMG-------KLINLEHLLNVGTSLASMPKEI 645 (795)
Q Consensus 576 ~~l~~-L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~~~~~lp~~i~-------~l~~L~~L~l~~~~l~~lp~~i 645 (795)
+++++ |++|++++|.++.+|..+..+. +|++|++++|......|..+. .+++|++|++++|.+..+|..+
T Consensus 373 ~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 452 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452 (636)
T ss_dssp EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH
T ss_pred hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH
Confidence 88888 8888888888888887776654 788888888866666777676 6777888888888777777654
Q ss_pred c-ccccC---CCc-------C-------------CCCcceEEEeccCCCCCCchhh--hhcCccEEEEeCCCCCCCCCCC
Q 044700 646 E-RLTRL---SAQ-------P-------------PEYLMRLEIRDYRGSTFPSWID--LLSRLTILSLKDWTNCEQLAPL 699 (795)
Q Consensus 646 ~-~L~~L---~l~-------~-------------~~~L~~L~l~~~~~~~lp~~i~--~l~~L~~L~L~~~~~~~~l~~l 699 (795)
. .+++| .+. | +++|+.|++++|....+|..+. .+++|+.|+|++|.+...+..+
T Consensus 453 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 532 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532 (636)
T ss_dssp HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhh
Confidence 3 23333 110 0 0167778888877777777776 7788888888888777633347
Q ss_pred CCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 700 GNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 700 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+++++|+.|+|++|..+. ++.+. ..+|..+..+++|++|++++|. +..++... +++|+.|++++|+
T Consensus 533 ~~l~~L~~L~Ls~N~~ls--~N~l~---~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~---~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQ--GNRTL---REWPEGITLCPSLTQLQIGSND-IRKVNEKI---TPNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSCBCTT--CCBCC---CCCCTTGGGCSSCCEEECCSSC-CCBCCSCC---CTTCCEEECCSCT
T ss_pred hcCCCCCEEECCCCcccc--cCccc---ccChHHHhcCCCCCEEECCCCc-CCccCHhH---hCcCCEEECcCCC
Confidence 778888888886544111 11222 2344556678888888888874 45555432 4788888888884
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=5.8e-21 Score=227.52 Aligned_cols=139 Identities=27% Similarity=0.333 Sum_probs=97.1
Q ss_pred ccccccCCCCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc-cCcccccc
Q 044700 570 KIPAEIGNLEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA-SMPKEIER 647 (795)
Q Consensus 570 ~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~ 647 (795)
.+|..++++++|++|+|++|.++ .+|..++++++|++|++++|...+.+|..+..+++|++|++++|.+. .+|..++.
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 45555566666666666666655 45556666666666666666555556666666666666666666655 44555555
Q ss_pred cccCCCcCCCCcceEEEeccCCC-CCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCc
Q 044700 648 LTRLSAQPPEYLMRLEIRDYRGS-TFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 648 L~~L~l~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l 716 (795)
+++| +.|++++|... .+|.+++.+++|++|+|++|.+.+.+|. ++++++|+.|++++|...
T Consensus 489 l~~L--------~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 489 CTNL--------NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CTTC--------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCC--------CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 5544 89999998876 6788999999999999999988876665 888999999999887643
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=4e-20 Score=197.53 Aligned_cols=244 Identities=16% Similarity=0.152 Sum_probs=182.9
Q ss_pred cccceeEEEEEeeCCCCCCc-cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPV-SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..++.+.+..+.+..++. .+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|..
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n-~l----~~l~~~ 118 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-----ISKISPGAFAP-LVKLERLYLSKN-QL----KELPEK 118 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-----CCCBCTTTTTT-CTTCCEEECCSS-CC----SBCCSS
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-----CCeeCHHHhcC-CCCCCEEECCCC-cC----CccChh
Confidence 34677888888888777744 67888888888888876 34455666777 888888888888 45 566665
Q ss_pred cCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCC--ccchhhccCcccceeecCCcccccCcccccccccC
Q 044700 575 IGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLE--TLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRL 651 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 651 (795)
+. ++|++|++++|.++.++. .+.++++|++|++++|.... ..|..+.++++|++|++++|.+..+|..+.
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~----- 191 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----- 191 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-----
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-----
Confidence 54 688888888888887764 57888888888888885432 556678888888888888888887776543
Q ss_pred CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccccCceeeCccccCCCCC
Q 044700 652 SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSG 729 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 729 (795)
++|+.|++++|....+ |..+..+++|++|+|++|.+....+ .+..+++|+.|++++|. ++.
T Consensus 192 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----------- 254 (330)
T 1xku_A 192 -----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVK----------- 254 (330)
T ss_dssp -----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSS-----------
T ss_pred -----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-Ccc-----------
Confidence 3558999999887766 5678889999999999998877655 48889999999998864 222
Q ss_pred CCccCCCCCCcceeeecCCccccccccccc------ccccccceeeecCCCC
Q 044700 730 IASSVTYFPRLKSLKFVNMEEWGDWECEMA------NVMPCLCSLSFVYCPE 775 (795)
Q Consensus 730 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~p~L~~L~l~~C~~ 775 (795)
+|..+..+++|++|++++| .++.++.... ...+.|+.|++.++|-
T Consensus 255 lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 2334557899999999987 4555543322 1257889999999863
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=208.40 Aligned_cols=256 Identities=20% Similarity=0.188 Sum_probs=195.8
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
....++.|.+..+.+..+ |..+.++++|++|++++|. +....+..|.. +++|++|+|++|... ...|..
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n~i~----~~~~~~ 123 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-----LKLIPLGVFTG-LSNLTKLDISENKIV----ILLDYM 123 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCSCCTTSSTT-CTTCCEEECTTSCCC----EECTTT
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-----CCccCcccccC-CCCCCEEECCCCccc----cCChhH
Confidence 356788888888877766 6778889999999998886 34444555666 889999999988433 445667
Q ss_pred cCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccccCcc-cccccccC
Q 044700 575 IGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLASMPK-EIERLTRL 651 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L 651 (795)
+.++++|++|+|++|.+..+ |..+.++++|++|++++|. +..+| ..+.++++|++|++++|.+..++. .+..+++|
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 88899999999999998866 4578889999999999884 44444 458888999999999888776553 34444444
Q ss_pred ---CC-------------cCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccc
Q 044700 652 ---SA-------------QPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSM 713 (795)
Q Consensus 652 ---~l-------------~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 713 (795)
.+ ....+|+.|++++|....+|. .+..+++|+.|+|++|.+....+. +..+++|+.|+|++|
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 11 122378999999999988885 577999999999999998765554 899999999999986
Q ss_pred cCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 714 GSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
.. ..+. +..+..+++|+.|++++| .+..++......+++|+.|++++||
T Consensus 283 ~l-~~~~----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 283 QL-AVVE----------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CC-SEEC----------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cc-ceEC----------HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 53 2221 223457899999999997 6666666555558999999999885
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=7.1e-20 Score=195.77 Aligned_cols=241 Identities=19% Similarity=0.174 Sum_probs=154.8
Q ss_pred cceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
..++.|.+..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~l~~~~~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-----ISKIHEKAFSP-LRKLQKLYISKN-HL----VEIPPNLP 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECGGGSTT-CTTCCEEECCSS-CC----CSCCSSCC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-----cCccCHhHhhC-cCCCCEEECCCC-cC----CccCcccc
Confidence 4566666666655554 3356666666666666654 33344455555 666666666666 34 44554443
Q ss_pred CCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCC--CccchhhccCcccceeecCCcccccCcccccccccCCC
Q 044700 577 NLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNL--ETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSA 653 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l 653 (795)
++|++|++++|.++.+|. .+.++++|++|++++|... ...|..+..+ +|++|++++|.+..+|..+.
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~------- 192 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP------- 192 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-------
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc-------
Confidence 566666666666665554 3566666666666666332 1344445555 66666666666666554432
Q ss_pred cCCCCcceEEEeccCCCCCC-chhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCC
Q 044700 654 QPPEYLMRLEIRDYRGSTFP-SWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIA 731 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 731 (795)
++|+.|++++|....++ ..+..+++|++|+|++|.+....+. ++.+++|+.|++++|. ++.+ |
T Consensus 193 ---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l-----------p 257 (332)
T 2ft3_A 193 ---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRV-----------P 257 (332)
T ss_dssp ---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBC-----------C
T ss_pred ---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ceec-----------C
Confidence 35688888888877765 5678889999999999988776653 8888999999998764 2222 2
Q ss_pred ccCCCCCCcceeeecCCcccccccccccc------cccccceeeecCCCC
Q 044700 732 SSVTYFPRLKSLKFVNMEEWGDWECEMAN------VMPCLCSLSFVYCPE 775 (795)
Q Consensus 732 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~------~~p~L~~L~l~~C~~ 775 (795)
..+..+++|+.|+++++ .+..++..... .++.|+.|++.+||-
T Consensus 258 ~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 33457889999999987 45555433221 257789999999963
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1e-19 Score=199.18 Aligned_cols=247 Identities=16% Similarity=0.111 Sum_probs=174.4
Q ss_pred cceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc-c
Q 044700 498 VKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE-I 575 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~-i 575 (795)
+.++.|.+..+.+..++ ..+..+++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|.. +
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~l~~~~~ 137 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQN-VPLLTVLVLERN-DL----SSLPRGIF 137 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSS-CC----CCCCTTTT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-----CCcCCHHHhcC-CCCCCEEECCCC-cc----CcCCHHHh
Confidence 56788888877776664 467888888888888876 44555666666 888888888888 45 566655 5
Q ss_pred CCCCCCCeEEcCCCCccccC-cccCCCCcCcEEeccCCCCCCccchhhccCcccceeec-------------------CC
Q 044700 576 GNLEFLRYLNLSLLKIAELP-EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLN-------------------VG 635 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l-------------------~~ 635 (795)
+++++|++|++++|.++.++ ..+.++++|++|++++|. +..++ +..+++|++|++ ++
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccccccCCCCcceEEECCC
Confidence 78888888888888888664 457888888888888874 33332 333444444444 44
Q ss_pred cccccCcccc-cccccC-----------CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCCCCCC
Q 044700 636 TSLASMPKEI-ERLTRL-----------SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAPLGNL 702 (795)
Q Consensus 636 ~~l~~lp~~i-~~L~~L-----------~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~l~~l 702 (795)
|.+..+|... .+|+.| .+..+++|+.|++++|....+ |..+..+++|++|+|++|.+......+..+
T Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l 294 (390)
T 3o6n_A 215 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 294 (390)
T ss_dssp SCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCC
T ss_pred CeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCC
Confidence 4333332211 122222 123456789999999988766 778889999999999999987755557889
Q ss_pred CccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 703 PSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 703 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
++|+.|++++|. +..+ +..+..+++|++|++.+|+ +..++ . ..+++|+.|++++|+
T Consensus 295 ~~L~~L~L~~n~-l~~~-----------~~~~~~l~~L~~L~L~~N~-i~~~~--~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 295 PTLKVLDLSHNH-LLHV-----------ERNQPQFDRLENLYLDHNS-IVTLK--L-STHHTLKNLTLSHND 350 (390)
T ss_dssp TTCCEEECCSSC-CCCC-----------GGGHHHHTTCSEEECCSSC-CCCCC--C-CTTCCCSEEECCSSC
T ss_pred CCCCEEECCCCc-ceec-----------CccccccCcCCEEECCCCc-cceeC--c-hhhccCCEEEcCCCC
Confidence 999999999874 3222 2223468999999999984 55554 2 349999999999984
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=202.08 Aligned_cols=223 Identities=19% Similarity=0.164 Sum_probs=147.7
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA- 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~- 573 (795)
.+..++.|.+..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|.
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~-l~~L~~L~L~~n-~l----~~~~~~ 130 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-----IRTIEIGAFNG-LANLNTLELFDN-RL----TTIPNG 130 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-----CCEECGGGGTT-CSSCCEEECCSS-CC----SSCCTT
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-----CCccChhhccC-CccCCEEECCCC-cC----CeeCHh
Confidence 345677777777776665 3567777777777777775 34444555666 777777777777 44 44443
Q ss_pred ccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCcccccCcccccccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTSLASMPKEIERLTRL 651 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 651 (795)
.+.++++|++|+|++|.++.+|. .+.++++|++|++++|+.+..+|. .+.++++|++|++++|.+..+|. +..++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~-- 207 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI-- 207 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS--
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc--
Confidence 46777777777777777776654 567777777777777666666654 46777777777777777776652 33333
Q ss_pred CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCC
Q 044700 652 SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSG 729 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 729 (795)
+|+.|++++|....+ |..+..+++|++|+|++|.+....+. +.++++|+.|+|++|. ++.++.
T Consensus 208 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------- 272 (440)
T 3zyj_A 208 ------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPH-------- 272 (440)
T ss_dssp ------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCT--------
T ss_pred ------ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccCh--------
Confidence 347777777776655 55666777777777777776655443 7777777777777653 222211
Q ss_pred CCccCCCCCCcceeeecCCc
Q 044700 730 IASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 730 ~~~~~~~~~~L~~L~l~~~~ 749 (795)
..+..+++|+.|++.+|+
T Consensus 273 --~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 --DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TTTSSCTTCCEEECCSSC
T ss_pred --hHhccccCCCEEEcCCCC
Confidence 223456777777777764
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=9.3e-20 Score=203.59 Aligned_cols=223 Identities=21% Similarity=0.196 Sum_probs=155.3
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-c
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-A 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~ 573 (795)
.+..++.|.+..+.+..+ +..+.++++|+.|++++|. +....+..|.. +++|++|+|++| .+ ..+| .
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~-l~~L~~L~L~~n-~l----~~~~~~ 141 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-----IRQIEVGAFNG-LASLNTLELFDN-WL----TVIPSG 141 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTT-CTTCCEEECCSS-CC----SBCCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-----cCCcChhhccC-cccCCEEECCCC-cC----CccChh
Confidence 445777888877777665 5567778888888888776 34445556666 788888888887 44 4444 3
Q ss_pred ccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCcccccCcccccccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTSLASMPKEIERLTRL 651 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 651 (795)
.+.++++|++|+|++|.++.+|. .+.++++|++|++++|+.+..+|. .+.++++|++|++++|.+..+| .+..++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~-- 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLV-- 218 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCT--
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccc--
Confidence 47778888888888888877765 677788888888887666776665 3777888888888888777765 234443
Q ss_pred CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCC
Q 044700 652 SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSG 729 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 729 (795)
+|+.|++++|....+ |..+..+++|+.|+|++|.+....+. +.++++|+.|+|++|. ++.++.
T Consensus 219 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------- 283 (452)
T 3zyi_A 219 ------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH-------- 283 (452)
T ss_dssp ------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT--------
T ss_pred ------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh--------
Confidence 447888888777665 55677788888888888877665444 7778888888887753 222221
Q ss_pred CCccCCCCCCcceeeecCCc
Q 044700 730 IASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 730 ~~~~~~~~~~L~~L~l~~~~ 749 (795)
..+..+++|+.|++.+|+
T Consensus 284 --~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 --DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --TSSTTCTTCCEEECCSSC
T ss_pred --HHhccccCCCEEEccCCC
Confidence 223457778888887764
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=207.13 Aligned_cols=127 Identities=20% Similarity=0.126 Sum_probs=98.4
Q ss_pred cccceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|++..+.+..++ ..+..+++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~Ls~N-~l----~~lp~~ 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----IQYLDISVFKF-NQELEYLDLSHN-KL----VKISCH 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----CCEEEGGGGTT-CTTCCEEECCSS-CC----CEEECC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCc-----cCCcChHHhhc-ccCCCEEecCCC-ce----eecCcc
Confidence 3468899999998887774 578889999999999887 45566777877 899999999998 56 567766
Q ss_pred cCCCCCCCeEEcCCCCccc--cCcccCCCCcCcEEeccCCCCCCccchhhccCccc--ceeecCCccc
Q 044700 575 IGNLEFLRYLNLSLLKIAE--LPEELCGLWNLQTLELNWCTNLETLPQGMGKLINL--EHLLNVGTSL 638 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L--~~L~l~~~~l 638 (795)
.+++|++|+|++|.++. +|..++++++|++|++++|.... ..+..+++| ++|++++|.+
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 78999999999999885 57889999999999999885432 234555555 6666666654
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=215.60 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=109.6
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|.+..+.+..+ +..+.++++|++|++++|.. ...+.+..|.. +++|++|+|++|... ...|..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~-L~~L~~L~Ls~N~l~----~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRN-LPNLRILDLGSSKIY----FLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSS-CTTCCEEECTTCCCC----EECTTS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcC-CCCCCEEECCCCcCc----ccCHhH
Confidence 567899999999988776 67899999999999999852 23334666777 999999999999432 445788
Q ss_pred cCCCCCCCeEEcCCCCccc-cCcc--cCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCccccc
Q 044700 575 IGNLEFLRYLNLSLLKIAE-LPEE--LCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLAS 640 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~ 640 (795)
|+++++|++|+|++|.++. +|.. ++++++|++|+|++|......| ..++++++|++|++++|.+..
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999999999999999884 5554 8899999999999986544433 568999999999999987764
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.2e-19 Score=192.00 Aligned_cols=247 Identities=17% Similarity=0.167 Sum_probs=186.3
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-c
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-A 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~ 573 (795)
....++.|.+..+.+..+ +..+.++++|++|++++|.. ... +..+ .++|++|++++| .+ ..+| .
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~l-~~~~---~~~L~~L~l~~n-~i----~~~~~~ 141 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-----VEI-PPNL---PSSLVELRIHDN-RI----RKVPKG 141 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-----CSC-CSSC---CTTCCEEECCSS-CC----CCCCSG
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-----Ccc-Cccc---cccCCEEECCCC-cc----CccCHh
Confidence 456799999999988876 67899999999999999873 222 2222 478999999999 45 4555 4
Q ss_pred ccCCCCCCCeEEcCCCCcc---ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-ccccccc
Q 044700 574 EIGNLEFLRYLNLSLLKIA---ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-KEIERLT 649 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~ 649 (795)
.+.++++|++|++++|.++ ..|..+..+ +|++|++++| .+..+|..+. ++|++|++++|.+..++ ..+..++
T Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCC
Confidence 5899999999999999997 346677777 9999999998 5677887665 79999999999998776 4566666
Q ss_pred cCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCC
Q 044700 650 RLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKS 728 (795)
Q Consensus 650 ~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 728 (795)
+| +.|++++|....++. ++..+++|++|+|++|.+......++.+++|+.|++++|. ++.++.......
T Consensus 218 ~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~- 287 (332)
T 2ft3_A 218 KL--------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV- 287 (332)
T ss_dssp TC--------SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-
T ss_pred CC--------CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-
Confidence 55 999999999887765 7889999999999999988555559999999999999865 444443322210
Q ss_pred CCCccCCCCCCcceeeecCCccccc--ccccccccccccceeeecCCC
Q 044700 729 GIASSVTYFPRLKSLKFVNMEEWGD--WECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 729 ~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~p~L~~L~l~~C~ 774 (795)
.....++.|+.|++.+++ +.. ........+++|+.|++++|.
T Consensus 288 ---~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 ---GFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---SCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---ccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 011237889999999986 332 222233448889999999885
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1e-19 Score=203.62 Aligned_cols=263 Identities=16% Similarity=0.134 Sum_probs=182.3
Q ss_pred cccceeEEEEEeeCCC-CC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGI-SF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~-~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~ 573 (795)
....++.|.+..+.+. .+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++|. +. ...|.
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~-l~---~~~~~ 121 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-----FLQLETGAFNG-LANLEVLTLTQCN-LD---GAVLS 121 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-----TCEECTTTTTT-CTTCCEEECTTSC-CB---THHHH
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCc-----cCccChhhccC-cccCCEEeCCCCC-CC---ccccC
Confidence 3456788888777664 23 4567788888888888876 34455666666 7888888888873 31 23343
Q ss_pred c--cCCCCCCCeEEcCCCCcccc-Ccc-cCCCCcCcEEeccCCCCCCccchhhccC------------------------
Q 044700 574 E--IGNLEFLRYLNLSLLKIAEL-PEE-LCGLWNLQTLELNWCTNLETLPQGMGKL------------------------ 625 (795)
Q Consensus 574 ~--i~~l~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l------------------------ 625 (795)
. ++++++|++|+|++|.++.+ |.. +.++++|++|++++|......|..+.++
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence 3 77788888888888888766 444 6778888888888875554445444433
Q ss_pred ----------cccceeecCCccccc-Ccccc------------------------------------------cccccC-
Q 044700 626 ----------INLEHLLNVGTSLAS-MPKEI------------------------------------------ERLTRL- 651 (795)
Q Consensus 626 ----------~~L~~L~l~~~~l~~-lp~~i------------------------------------------~~L~~L- 651 (795)
++|++|++++|.+.. .|..+ .+++.|
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 567777777775531 11111 112222
Q ss_pred ------------CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCce
Q 044700 652 ------------SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVR 717 (795)
Q Consensus 652 ------------~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~ 717 (795)
.+..+++|+.|++++|....+ |..+..+++|++|+|++|.+....+. ++++++|+.|+|++|.. +
T Consensus 282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~ 360 (455)
T 3v47_A 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-R 360 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC-C
T ss_pred ecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc-c
Confidence 133456789999999998776 55788999999999999998766554 89999999999998753 3
Q ss_pred eeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC
Q 044700 718 KVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP 780 (795)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP 780 (795)
.+. +..+..+++|++|++++| .+..++......+++|+.|++++|+---..|
T Consensus 361 ~~~----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 361 ALG----------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEC----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccC----------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 221 233457999999999997 5666666555559999999999985333344
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=4.5e-20 Score=194.93 Aligned_cols=226 Identities=20% Similarity=0.209 Sum_probs=176.3
Q ss_pred cccceeEEEEEeeCCCCCCcc-ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVS-VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|.+..+.+..++.. +.++++|++|++++|.... ....+..+.. +++|++|+|++| .+ ..+|..
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~-~~~L~~L~Ls~n-~i----~~l~~~ 96 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQSDFG-TTSLKYLDLSFN-GV----ITMSSN 96 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHHHHS-CSCCCEEECCSC-SE----EEEEEE
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCccccccc-ccccCEEECCCC-cc----ccChhh
Confidence 456889999999888877654 6889999999999886321 1112344556 899999999999 55 567878
Q ss_pred cCCCCCCCeEEcCCCCccccCc--ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc--Cccccccccc
Q 044700 575 IGNLEFLRYLNLSLLKIAELPE--ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS--MPKEIERLTR 650 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~ 650 (795)
+.++++|++|++++|.++.++. .+.++++|++|++++|......|..+..+++|++|++++|.+.. +|..++.+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 8899999999999999988764 78899999999999986656677778899999999999998875 6776777666
Q ss_pred CCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCeeecccccCceeeCccccCCCC
Q 044700 651 LSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESLSLFSMGSVRKVGNEFLGIKS 728 (795)
Q Consensus 651 L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 728 (795)
| +.|++++|....+ |.++..+++|++|+|++|.+....+ .+..+++|+.|++++|......
T Consensus 177 L--------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------- 239 (306)
T 2z66_A 177 L--------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--------- 239 (306)
T ss_dssp C--------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS---------
T ss_pred C--------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC---------
Confidence 5 8999999987776 6678889999999999998876555 3788999999999886532211
Q ss_pred CCCccCCCC-CCcceeeecCCc
Q 044700 729 GIASSVTYF-PRLKSLKFVNME 749 (795)
Q Consensus 729 ~~~~~~~~~-~~L~~L~l~~~~ 749 (795)
+..+..+ ++|++|++++++
T Consensus 240 --~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 240 --KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --SSSCCCCCTTCCEEECTTCC
T ss_pred --HHHHHhhhccCCEEEccCCC
Confidence 2233456 489999999875
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-19 Score=209.39 Aligned_cols=247 Identities=15% Similarity=0.102 Sum_probs=176.5
Q ss_pred cceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc-c
Q 044700 498 VKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE-I 575 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~-i 575 (795)
..++.|.+..+.+..++ ..+..+++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|.. |
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~l~~~~~ 143 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQN-VPLLTVLVLERN-DL----SSLPRGIF 143 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSS-CC----CCCCTTTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-----CCCCCHHHHcC-CCCCCEEEeeCC-CC----CCCCHHHh
Confidence 56788888887777664 478888888888888886 45555666677 888888888888 45 556654 5
Q ss_pred CCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCC-------------------
Q 044700 576 GNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVG------------------- 635 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~------------------- 635 (795)
+++++|++|+|++|.++.+|. .++++++|++|++++|. +..+| +..+++|++|++++
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 888888888888888886654 68888888888888884 44333 33344444444444
Q ss_pred cccccCcccc-cccccC-----------CCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCCCCCC
Q 044700 636 TSLASMPKEI-ERLTRL-----------SAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAPLGNL 702 (795)
Q Consensus 636 ~~l~~lp~~i-~~L~~L-----------~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~l~~l 702 (795)
|.+..+|..+ .+|+.| .+..+++|+.|++++|....+ |..++.+++|+.|+|++|.+....+.++.+
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 300 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 300 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCC
T ss_pred CcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccC
Confidence 3333222211 122222 123456789999999988766 778899999999999999988765557889
Q ss_pred CccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 703 PSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 703 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
|+|+.|+|++|.. .. +|..+..+++|++|++++|. +..++ . ..+++|+.|++++||
T Consensus 301 ~~L~~L~Ls~N~l-~~-----------i~~~~~~l~~L~~L~L~~N~-l~~~~--~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNHL-LH-----------VERNQPQFDRLENLYLDHNS-IVTLK--L-STHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSCC-CC-----------CGGGHHHHTTCSEEECCSSC-CCCCC--C-CTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCCC-Cc-----------cCcccccCCCCCEEECCCCC-CCCcC--h-hhcCCCCEEEeeCCC
Confidence 9999999998652 22 22334578999999999984 54443 2 338999999999985
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.1e-19 Score=192.03 Aligned_cols=245 Identities=20% Similarity=0.144 Sum_probs=189.4
Q ss_pred ceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCC
Q 044700 499 KLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNL 578 (795)
Q Consensus 499 ~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l 578 (795)
.++.+.+..+.+..+|..+. ++++.|++++|. +....+..|.. +++|++|+|++| .+. ...|..++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~-l~~L~~L~L~~n-~l~---~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-----ITEIKDGDFKN-LKNLHTLILINN-KIS---KISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-----CCCBCTTTTTT-CTTCCEEECCSS-CCC---CBCTTTTTTC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-----CCEeChhhhcc-CCCCCEEECCCC-cCC---eeCHHHhcCC
Confidence 45666666666666676553 689999999987 44555556777 999999999999 441 3447889999
Q ss_pred CCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc---CcccccccccCCCcC
Q 044700 579 EFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS---MPKEIERLTRLSAQP 655 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---lp~~i~~L~~L~l~~ 655 (795)
++|++|++++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.+.. .+..+..+++|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L---- 173 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL---- 173 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC----
T ss_pred CCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc----
Confidence 999999999999999988765 799999999985544445568999999999999998763 34455666655
Q ss_pred CCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccC
Q 044700 656 PEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSV 734 (795)
Q Consensus 656 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 734 (795)
+.|+++++....+|..+. ++|++|++++|.+....+. +..+++|+.|++++|.. +.++. ..+
T Consensus 174 ----~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~----------~~~ 236 (330)
T 1xku_A 174 ----SYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDN----------GSL 236 (330)
T ss_dssp ----CEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-CEECT----------TTG
T ss_pred ----CEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-ceeCh----------hhc
Confidence 999999999888887654 8999999999988776544 88999999999998652 22221 224
Q ss_pred CCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 735 TYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 735 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
..+++|++|++++| .+..++..... +++|+.|++++| .++.+|.
T Consensus 237 ~~l~~L~~L~L~~N-~l~~lp~~l~~-l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 237 ANTPHLRELHLNNN-KLVKVPGGLAD-HKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp GGSTTCCEEECCSS-CCSSCCTTTTT-CSSCCEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCC-cCccCChhhcc-CCCcCEEECCCC-cCCccCh
Confidence 46899999999997 56666555444 899999999999 6888763
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.6e-19 Score=209.84 Aligned_cols=209 Identities=21% Similarity=0.180 Sum_probs=158.6
Q ss_pred cccceeEEEEEeeCCCCCCc-cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-
Q 044700 496 RRVKLSHLFLRVSEGISFPV-SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA- 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~- 573 (795)
.+..+++|.+..+.+..++. .+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~l~~~ 91 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQK-LPMLKVLNLQHN-EL----SQLSDK 91 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHH-CTTCCEEECCSS-CC----CCCCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhc-ccCcCEEECCCC-cc----CccChh
Confidence 45789999999998887754 68899999999999986 45566777888 999999999999 55 56665
Q ss_pred ccCCCCCCCeEEcCCCCccccC-cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-c-----c
Q 044700 574 EIGNLEFLRYLNLSLLKIAELP-EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-I-----E 646 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i-----~ 646 (795)
.|+++++|++|+|++|.++.+| ..++++++|++|++++|......|..+.++++|++|++++|.+..++.. + .
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 5899999999999999999886 5789999999999999976666677788899999999998887766532 1 1
Q ss_pred ccccCCCc----------------------------------------CCCCcceEEEeccCCCCC-CchhhhhcC--cc
Q 044700 647 RLTRLSAQ----------------------------------------PPEYLMRLEIRDYRGSTF-PSWIDLLSR--LT 683 (795)
Q Consensus 647 ~L~~L~l~----------------------------------------~~~~L~~L~l~~~~~~~l-p~~i~~l~~--L~ 683 (795)
.|+.|.+. ...+|+.|+++++....+ |.++..++. |+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 22222110 114567777777665543 456666644 88
Q ss_pred EEEEeCCCCCCCCCC-CCCCCccCeeecccccC
Q 044700 684 ILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGS 715 (795)
Q Consensus 684 ~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~ 715 (795)
.|+|++|.+....+. ++.+++|+.|++++|..
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 888888887765544 78888888888887653
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=207.37 Aligned_cols=270 Identities=18% Similarity=0.162 Sum_probs=167.9
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
....+++|.+..+.+..+ |..+.++++|++|++++|.. .. +|.. . +++|++|+|++|. +.. ..+|..
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~-lp~~--~-l~~L~~L~L~~N~-l~~--~~~p~~ 110 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-----VK-ISCH--P-TVNLKHLDLSFNA-FDA--LPICKE 110 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-----CE-EECC--C-CCCCSEEECCSSC-CSS--CCCCGG
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-----ee-cCcc--c-cCCccEEeccCCc-ccc--ccchhh
Confidence 346789999999988777 67889999999999999873 32 3333 4 8999999999994 411 246788
Q ss_pred cCCCCCCCeEEcCCCCccccCcccCCCCcC--cEEeccCCCC--CCccchhhccCc------------------------
Q 044700 575 IGNLEFLRYLNLSLLKIAELPEELCGLWNL--QTLELNWCTN--LETLPQGMGKLI------------------------ 626 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~L~~~~~--~~~lp~~i~~l~------------------------ 626 (795)
++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|..+..+.
T Consensus 111 ~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp GGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred hccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhc
Confidence 9999999999999998764 234455555 6666666644 233333333211
Q ss_pred -----------------------------------------------------------ccceeecCCcccc-cCcccc-
Q 044700 627 -----------------------------------------------------------NLEHLLNVGTSLA-SMPKEI- 645 (795)
Q Consensus 627 -----------------------------------------------------------~L~~L~l~~~~l~-~lp~~i- 645 (795)
+|++|++++|.+. .+|..+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 4555555555544 445444
Q ss_pred ----cccccCC----------------------------------------CcCCCCcceEEEeccCCCC-CCchhhhhc
Q 044700 646 ----ERLTRLS----------------------------------------AQPPEYLMRLEIRDYRGST-FPSWIDLLS 680 (795)
Q Consensus 646 ----~~L~~L~----------------------------------------l~~~~~L~~L~l~~~~~~~-lp~~i~~l~ 680 (795)
+.+++|. ...+++|+.|++++|.... +|.++..++
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred hcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCC
Confidence 2222220 0344567777777776555 566667777
Q ss_pred CccEEEEeCCCCCC--CCCC-CCCCCccCeeecccccCceeeCccccC-CCC---------CC-CccCCCC-CCcceeee
Q 044700 681 RLTILSLKDWTNCE--QLAP-LGNLPSLESLSLFSMGSVRKVGNEFLG-IKS---------GI-ASSVTYF-PRLKSLKF 745 (795)
Q Consensus 681 ~L~~L~L~~~~~~~--~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~---------~~-~~~~~~~-~~L~~L~l 745 (795)
+|++|+|++|.+.. .+|. ++.+++|+.|++++|.....++..... ... .+ ......+ ++|+.|++
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~L 428 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL 428 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEEC
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEEC
Confidence 77777777777654 2222 667777777777765432212221100 000 00 0001122 57888888
Q ss_pred cCCcccccccccccccccccceeeecCCCCCcCCCCC
Q 044700 746 VNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGI 782 (795)
Q Consensus 746 ~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~ 782 (795)
++| .+..++.... .+++|+.|++++| +++.+|..
T Consensus 429 s~N-~l~~ip~~~~-~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 429 HSN-KIKSIPKQVV-KLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CSS-CCCCCCGGGG-GCTTCCEEECCSS-CCCCCCTT
T ss_pred CCC-cccccchhhh-cCCCCCEEECCCC-cCCccCHH
Confidence 876 5556665555 4889999999998 78888853
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.3e-19 Score=205.95 Aligned_cols=132 Identities=22% Similarity=0.213 Sum_probs=77.8
Q ss_pred ccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cc
Q 044700 497 RVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AE 574 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~ 574 (795)
...+++|++..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..++ ..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~-l~~L~~L~Ls~n-~l----~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYS-LGSLEHLDLSDN-HL----SSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTT-CTTCCEEECTTS-CC----CSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccc-cccCCEEECCCC-cc----CccCHHH
Confidence 34667777777666555 4556677777777777665 33344455555 666666666666 33 2333 33
Q ss_pred cCCCCCCCeEEcCCCCccc--cCcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccc
Q 044700 575 IGNLEFLRYLNLSLLKIAE--LPEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~ 639 (795)
++++++|++|++++|.++. .|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 6666666666666666663 34556666666666666664444444 34555555555555555443
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=3.5e-19 Score=198.32 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=106.1
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...+++|.+..+.+..++ +..+++|++|++++|... .. + +.. +++|++|++++| .+ ..+| ++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~-----~~-~--~~~-l~~L~~L~L~~N-~l----~~l~--~~ 124 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT-----NL-D--VTP-LTKLTYLNCDTN-KL----TKLD--VS 124 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-----CC-C--CTT-CTTCCEEECCSS-CC----SCCC--CT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc-----ee-e--cCC-CCcCCEEECCCC-cC----Ceec--CC
Confidence 345666777666666553 666777777777766532 21 1 444 677777777777 34 3343 66
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccC-----
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRL----- 651 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L----- 651 (795)
++++|++|++++|.++.+| ++++++|++|++++|..++.+ .+..+++|++|++++|.++.+| ++.+++|
T Consensus 125 ~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEEC
Confidence 7777777777777777664 667777777777777555555 3667778888888888777765 4444433
Q ss_pred --------CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCC
Q 044700 652 --------SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 652 --------~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 694 (795)
.+..+++|+.|++++|....+| +..+++|++|++++|.+.+
T Consensus 199 ~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 199 DTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 1223345555555555555554 4455555555555555444
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.2e-19 Score=207.31 Aligned_cols=252 Identities=19% Similarity=0.156 Sum_probs=169.7
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-cc
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA-EI 575 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~-~i 575 (795)
...++.+.+..+.+..+|..+..+++|++|++++|. +....+..+.. +++|++|++++|... ..+|. .+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~~~----~~~~~~~~ 346 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-----FENLCQISASN-FPSLTHLSIKGNTKR----LELGTGCL 346 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-----CSBGGGGCGGG-CTTCSEEECCSCSSC----CBCCSSTT
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCC-----cCcCchhhhhc-cCcCCEEECCCCCcc----cccchhhh
Confidence 456778888877777777777888888888888776 34445555666 788888888887433 34544 37
Q ss_pred CCCCCCCeEEcCCCCcccc---CcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-c-ccccccc
Q 044700 576 GNLEFLRYLNLSLLKIAEL---PEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-K-EIERLTR 650 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~-~i~~L~~ 650 (795)
+++++|++|++++|.++.+ |..+.++++|++|++++|......|..+.++++|++|++++|.+...+ . .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 7888888888888887755 567788888888888887555556677888888888888888776442 2 2555554
Q ss_pred CCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCC-C---CCCCCCCccCeeecccccCceeeCccccC
Q 044700 651 LSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQ-L---APLGNLPSLESLSLFSMGSVRKVGNEFLG 725 (795)
Q Consensus 651 L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~-l---~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 725 (795)
| +.|++++|..... |.++..+++|++|++++|.+.+. + ..++.+++|+.|++++|.. +.+.
T Consensus 427 L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~----- 492 (606)
T 3t6q_A 427 L--------KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSID----- 492 (606)
T ss_dssp C--------CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-CEEC-----
T ss_pred C--------CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-CccC-----
Confidence 4 7777777765543 55666777788888877776541 1 2266777778887777542 2221
Q ss_pred CCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCC
Q 044700 726 IKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP 780 (795)
Q Consensus 726 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP 780 (795)
+..+..+++|++|++++|. +..........+++| .|++++| +++.+|
T Consensus 493 -----~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~ 539 (606)
T 3t6q_A 493 -----QHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIIL 539 (606)
T ss_dssp -----TTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCC
T ss_pred -----hhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccC
Confidence 1233467778888887763 433333333346777 7777777 566654
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=199.64 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=191.6
Q ss_pred cccceeEEEEEeeCCCCCCc-cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPV-SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
....+++|.+..+.+..++. .+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|..
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n-~l----~~~~~~ 118 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSS-LGSLEHLDLSYN-YL----SNLSSS 118 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTT-CTTCCEEECCSS-CC----SSCCHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCC-CCCCCEEECCCC-cC----CcCCHh
Confidence 34578999999888887754 68899999999999886 44555666777 899999999998 55 556655
Q ss_pred -cCCCCCCCeEEcCCCCccccCc--ccCCCCcCcEEeccCCCCCCcc-chhhccCcccceeecCCcccccC-cccccccc
Q 044700 575 -IGNLEFLRYLNLSLLKIAELPE--ELCGLWNLQTLELNWCTNLETL-PQGMGKLINLEHLLNVGTSLASM-PKEIERLT 649 (795)
Q Consensus 575 -i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~ 649 (795)
++++++|++|++++|.++.+|. .+.++++|++|++++|..+..+ |..+.++++|++|++++|.+..+ |..++.++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 8889999999999999998887 7889999999999998555555 56788999999999999988765 56677766
Q ss_pred cCCCcCCCCcceEEEeccCCCCCCchhh-hhcCccEEEEeCCCCCCCCCC----CCCCCccCeeecccccCceeeCcccc
Q 044700 650 RLSAQPPEYLMRLEIRDYRGSTFPSWID-LLSRLTILSLKDWTNCEQLAP----LGNLPSLESLSLFSMGSVRKVGNEFL 724 (795)
Q Consensus 650 ~L~l~~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~~~~l~~~~~~~~ 724 (795)
+| +.|++++|....+|..+. .+++|+.|++++|.+....+. ....+.++.+++.++.. . ++.+.
T Consensus 199 ~L--------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l-~--~~~l~ 267 (353)
T 2z80_A 199 NV--------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-T--DESLF 267 (353)
T ss_dssp EE--------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC-C--HHHHH
T ss_pred cC--------CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc-c--Ccchh
Confidence 66 899999998877776544 689999999999987764322 34566778888876431 1 01111
Q ss_pred CCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 725 GIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 725 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
.+|..+..+++|+.|++++| .+..++......+++|++|++++|+
T Consensus 268 ----~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 268 ----QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 12234557899999999997 5667766554458999999999985
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=206.93 Aligned_cols=136 Identities=20% Similarity=0.177 Sum_probs=111.4
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccc-cc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKI-PA 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-p~ 573 (795)
.+..+++|++..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|+|++|. + ..+ |.
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~-l~~L~~L~L~~n~-l----~~~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQS-LSHLSTLILTGNP-I----QSLALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTCC-C----CEECTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccC-chhCCEEeCcCCc-C----CccCHh
Confidence 456789999999888776 4578899999999999986 44555667777 8999999999994 4 344 46
Q ss_pred ccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcccccCc
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLASMP 642 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp 642 (795)
.|+++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..+.++++|++|++++|.+..++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 78999999999999999998876 68899999999999985444 47888999999999999998776553
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=7.7e-19 Score=211.43 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=144.2
Q ss_pred EEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccc-ccccCCCCCCC
Q 044700 504 FLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKI-PAEIGNLEFLR 582 (795)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~L~ 582 (795)
....++...+|. -.++|++|++++|. +....+..|.. +++|++|+|++|... ..+ |..|+++++|+
T Consensus 10 dcs~~~L~~vP~---lp~~l~~LdLs~N~-----i~~i~~~~~~~-l~~L~~LdLs~n~~~----~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 10 FYRFCNLTQVPQ---VLNTTERLLLSFNY-----IRTVTASSFPF-LEQLQLLELGSQYTP----LTIDKEAFRNLPNLR 76 (844)
T ss_dssp EESCCCSSCCCS---SCTTCCEEEEESCC-----CCEECSSSCSS-CCSCSEEEECTTCCC----CEECTTTTSSCTTCC
T ss_pred EccCCCCCCCCC---CCCCcCEEECCCCc-----CCccChhHCcc-cccCeEEeCCCCCCc----cccCHHHhcCCCCCC
Confidence 334455666676 45899999999997 45556667777 999999999999544 555 67899999999
Q ss_pred eEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccchh--hccCcccceeecCCcccccCc--ccccccccCCCcCCC
Q 044700 583 YLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQG--MGKLINLEHLLNVGTSLASMP--KEIERLTRLSAQPPE 657 (795)
Q Consensus 583 ~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~l~~~~ 657 (795)
+|+|++|.+..+ |..++++++|++|+|++|.....+|.. +.++++|++|++++|.+..++ ..++++++|
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L------ 150 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL------ 150 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC------
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC------
Confidence 999999999976 789999999999999999766666665 899999999999999998663 457777777
Q ss_pred CcceEEEeccCCCCC-Cchhhhh--cCccEEEEeCCCCCCCCCC-CCCCCc------cCeeecccc
Q 044700 658 YLMRLEIRDYRGSTF-PSWIDLL--SRLTILSLKDWTNCEQLAP-LGNLPS------LESLSLFSM 713 (795)
Q Consensus 658 ~L~~L~l~~~~~~~l-p~~i~~l--~~L~~L~L~~~~~~~~l~~-l~~l~~------L~~L~L~~~ 713 (795)
+.|++++|....+ |..+..+ ++|+.|++++|.+....+. ++.+++ |+.|++++|
T Consensus 151 --~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 151 --KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp --CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred --CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 8888888775543 5556655 6777777777766554432 444443 666666655
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=7.1e-19 Score=197.24 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=47.3
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...+++|.+..+.+..++. +..+++|++|++++|.. ....+ +.. +++|++|++++| .+ ..++. +.
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-----~~~~~--~~~-l~~L~~L~L~~n-~l----~~~~~-~~ 131 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-----ADITP--LAN-LTNLTGLTLFNN-QI----TDIDP-LK 131 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-----CCCGG--GTT-CTTCCEEECCSS-CC----CCCGG-GT
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-----ccChh--hcC-CCCCCEEECCCC-CC----CCChH-Hc
Confidence 3456666666666655544 66666666666666642 22222 444 666666666666 33 33332 55
Q ss_pred CCCCCCeEEcCCCCccccC
Q 044700 577 NLEFLRYLNLSLLKIAELP 595 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp 595 (795)
++++|++|++++|.+..+|
T Consensus 132 ~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp TCTTCSEEEEEEEEECCCG
T ss_pred CCCCCCEEECCCCccCCCh
Confidence 6666666666666555443
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-19 Score=190.75 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=185.5
Q ss_pred EEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCC
Q 044700 502 HLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFL 581 (795)
Q Consensus 502 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L 581 (795)
.+.....++..+|..+. ++|++|++++|. +....+..|.. +++|++|+|++| .+... ...|..+..+++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-----l~~i~~~~~~~-l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~L 80 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-----LQSLPHGVFDK-LTQLTKLSLSSN-GLSFK-GCCSQSDFGTTSL 80 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-----CCCCCTTTTTT-CTTCSEEECCSS-CCCEE-EEEEHHHHSCSCC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-----cCccCHhHhhc-cccCCEEECCCC-ccCcc-cCccccccccccc
Confidence 44555555666676543 689999999987 34445555677 999999999999 44110 1225667789999
Q ss_pred CeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccc--hhhccCcccceeecCCcccccCc-ccccccccCCCcCCCC
Q 044700 582 RYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLP--QGMGKLINLEHLLNVGTSLASMP-KEIERLTRLSAQPPEY 658 (795)
Q Consensus 582 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~ 658 (795)
++|+|++|.+..+|..+..+++|++|++++|. +..+| ..+.++++|++|++++|.+...+ ..+..+++|
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------- 152 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------- 152 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-------
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-------
Confidence 99999999999999999999999999999984 55554 46899999999999999887554 445566655
Q ss_pred cceEEEeccCCCC--CCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCC
Q 044700 659 LMRLEIRDYRGST--FPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVT 735 (795)
Q Consensus 659 L~~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (795)
+.|++++|.... +|..+..+++|++|+|++|.+....+. +..+++|+.|++++|.. +.++. ..+.
T Consensus 153 -~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~----------~~~~ 220 (306)
T 2z66_A 153 -EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT----------FPYK 220 (306)
T ss_dssp -CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCS----------GGGT
T ss_pred -CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccCh----------hhcc
Confidence 999999998764 688899999999999999998876554 89999999999998652 22211 2345
Q ss_pred CCCCcceeeecCCccccccccccccccc-ccceeeecCCC
Q 044700 736 YFPRLKSLKFVNMEEWGDWECEMANVMP-CLCSLSFVYCP 774 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~l~~~~~~~~~~~p-~L~~L~l~~C~ 774 (795)
.+++|++|++++|. +..........+| +|+.|++++|+
T Consensus 221 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 78999999999985 4443333333364 99999999984
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=199.11 Aligned_cols=240 Identities=17% Similarity=0.174 Sum_probs=191.0
Q ss_pred eEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCC
Q 044700 501 SHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEF 580 (795)
Q Consensus 501 ~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~ 580 (795)
..+......+..+|..+. ++++.|++++|. +....+..|.. +++|++|+|++| .+. ...+..|.++++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~-l~~L~~L~Ls~n-~i~---~i~~~~~~~l~~ 113 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKH-LRHLEILQLSRN-HIR---TIEIGAFNGLAN 113 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCC-----CCEECTTTTSS-CSSCCEEECCSS-CCC---EECGGGGTTCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhC-CCCCCEEECCCC-cCC---ccChhhccCCcc
Confidence 345555566677777664 789999999987 45555667777 999999999999 451 333467999999
Q ss_pred CCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCc-ccccCcc-cccccccCCCcCC
Q 044700 581 LRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGT-SLASMPK-EIERLTRLSAQPP 656 (795)
Q Consensus 581 L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~l~~~ 656 (795)
|++|+|++|.++.+|. .+..+++|++|+|++|. +..+| ..+.++++|++|++++| .+..++. .+..+++|
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L----- 187 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL----- 187 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-----
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-----
Confidence 9999999999999876 68999999999999995 55554 46899999999999985 5556654 35555555
Q ss_pred CCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCC
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVT 735 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (795)
+.|++++|....+|. +..+++|+.|+|++|.+....+. +.++++|+.|+|++|. ++.+.. ..+.
T Consensus 188 ---~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------~~~~ 252 (440)
T 3zyj_A 188 ---RYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER----------NAFD 252 (440)
T ss_dssp ---CEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECT----------TSST
T ss_pred ---CeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEECh----------hhhc
Confidence 999999999988885 78899999999999998876554 9999999999999865 333322 2345
Q ss_pred CCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 736 YFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
.+++|+.|+|++| .+..++......+++|+.|++++||
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7899999999997 6777766655669999999999875
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=2.1e-19 Score=200.77 Aligned_cols=240 Identities=17% Similarity=0.152 Sum_probs=190.3
Q ss_pred eEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCC
Q 044700 501 SHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEF 580 (795)
Q Consensus 501 ~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~ 580 (795)
..+.....++..+|..+. ++++.|++++|. +....+..|.. +++|++|+|++| .+. ...|..|.++++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~-l~~L~~L~Ls~n-~i~---~~~~~~~~~l~~ 124 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-----IQMIQADTFRH-LHHLEVLQLGRN-SIR---QIEVGAFNGLAS 124 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTT-CTTCCEEECCSS-CCC---EECTTTTTTCTT
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCc-----CceECHHHcCC-CCCCCEEECCCC-ccC---CcChhhccCccc
Confidence 345555555666676554 689999999987 45566777888 999999999999 451 344577999999
Q ss_pred CCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCc-ccccCccc-ccccccCCCcCC
Q 044700 581 LRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGT-SLASMPKE-IERLTRLSAQPP 656 (795)
Q Consensus 581 L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~-~l~~lp~~-i~~L~~L~l~~~ 656 (795)
|++|+|++|.++.+|. .+.++++|++|+|++|. +..+|. .+.++++|++|++++| .+..+|.. +..+++|
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L----- 198 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL----- 198 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-----
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-----
Confidence 9999999999998876 48899999999999995 555554 6899999999999984 56666643 5555554
Q ss_pred CCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCC
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVT 735 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (795)
+.|++++|....+|. +..+++|+.|+|++|.+....+. +.++++|+.|+|++|.. ..+.. ..+.
T Consensus 199 ---~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~----------~~~~ 263 (452)
T 3zyi_A 199 ---KYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER----------NAFD 263 (452)
T ss_dssp ---CEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-CEECT----------TTTT
T ss_pred ---CEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-ceECH----------HHhc
Confidence 999999999988874 77899999999999998876665 89999999999998653 22221 2345
Q ss_pred CCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 736 YFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
.+++|+.|++++| .+..++......+++|+.|++++||
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 7899999999998 6777766655569999999999885
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=4.7e-19 Score=203.71 Aligned_cols=127 Identities=22% Similarity=0.168 Sum_probs=94.4
Q ss_pred cccceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+..+++|++..+.+..++ ..+.++++|++|++++|. +....+..|.. +++|++|+|++| .+ ..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N-~l----~~lp~~ 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-----IRSLDFHVFLF-NQDLEYLDVSHN-RL----QNISCC 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-----CCEECTTTTTT-CTTCCEEECTTS-CC----CEECSC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-----CCcCCHHHhCC-CCCCCEEECCCC-cC----CccCcc
Confidence 3468889999988888774 578899999999999887 45556677777 899999999998 56 567766
Q ss_pred cCCCCCCCeEEcCCCCccccC--cccCCCCcCcEEeccCCCCCCccchhhccCccc--ceeecCCccc
Q 044700 575 IGNLEFLRYLNLSLLKIAELP--EELCGLWNLQTLELNWCTNLETLPQGMGKLINL--EHLLNVGTSL 638 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L--~~L~l~~~~l 638 (795)
.+++|++|+|++|.++.+| ..++++++|++|++++|..... .+..+++| ++|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 7899999999999988654 6888899999999988753321 23333333 5555555444
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=7.9e-19 Score=188.91 Aligned_cols=245 Identities=20% Similarity=0.258 Sum_probs=158.2
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
....++.+.+..+.+..++ .+..+++|++|++++|.. ... +. +.. +++|++|++++|... .. +..+
T Consensus 86 ~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i-----~~~-~~-~~~-l~~L~~L~l~~n~~~----~~-~~~~ 151 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI-----SDI-SP-LAN-LTKMYSLNLGANHNL----SD-LSPL 151 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC-----CCC-GG-GTT-CTTCCEEECTTCTTC----CC-CGGG
T ss_pred cCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc-----cCc-hh-hcc-CCceeEEECCCCCCc----cc-ccch
Confidence 3456777777777666543 567777777777777652 222 11 444 677777777776433 22 2336
Q ss_pred CCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccC----
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRL---- 651 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L---- 651 (795)
.++++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 666666666666666665544 556666666666665 3334433 4455555555555554444332 2222222
Q ss_pred ----------CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCc
Q 044700 652 ----------SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGN 721 (795)
Q Consensus 652 ----------~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 721 (795)
.+..+++|+.|++++|....+ ..+..+++|++|++++|.+... +.+..+++|+.|++++|.... .+
T Consensus 228 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~-~~- 303 (347)
T 4fmz_A 228 IGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN-ED- 303 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCG-GG-
T ss_pred ccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCC-cC-
Confidence 122345679999999988876 4678999999999999987664 668999999999999875321 11
Q ss_pred cccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 722 EFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+..+..+++|++|++++|+ +...+. ...+++|++|++++|+
T Consensus 304 ---------~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 ---------MEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------HHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSSCC-
T ss_pred ---------hhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehhhhc
Confidence 1234578999999999985 444433 3449999999999994
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.4e-18 Score=194.80 Aligned_cols=197 Identities=22% Similarity=0.211 Sum_probs=137.5
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...++.+.+..+.+..++ .+..+++|++|++++|.. ....+ +.. +++|++|++++| .+ ..++. ++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l-----~~~~~--~~~-l~~L~~L~l~~n-~l----~~~~~-~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL-----TDITP--LKN-LTKLVDILMNNN-QI----ADITP-LA 109 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCC-----CCCGG--GTT-CTTCCEEECCSS-CC----CCCGG-GT
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCcc-----CCchh--hhc-cccCCEEECCCC-cc----ccChh-hc
Confidence 457889999888887766 488999999999999873 33333 666 999999999999 45 45555 99
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccch--------------------hhccCcccceeecCCc
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQ--------------------GMGKLINLEHLLNVGT 636 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--------------------~i~~l~~L~~L~l~~~ 636 (795)
++++|++|++++|.++.+|. +.++++|++|++++|. +..+|. .+.++++|++|++++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 99999999999999998876 8999999999999884 444432 2455666777777777
Q ss_pred ccccCcccccccccC--------------CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCC
Q 044700 637 SLASMPKEIERLTRL--------------SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNL 702 (795)
Q Consensus 637 ~l~~lp~~i~~L~~L--------------~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l 702 (795)
.+..++. +..+++| .+..+++|+.|++++|....++ .+..+++|++|++++|.+....+ +..+
T Consensus 188 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l 264 (466)
T 1o6v_A 188 KVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGL 264 (466)
T ss_dssp CCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred cCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcC
Confidence 6665542 4444433 0112345666666666655443 45566666666666666544333 5666
Q ss_pred CccCeeecccc
Q 044700 703 PSLESLSLFSM 713 (795)
Q Consensus 703 ~~L~~L~L~~~ 713 (795)
++|+.|++++|
T Consensus 265 ~~L~~L~l~~n 275 (466)
T 1o6v_A 265 TKLTELKLGAN 275 (466)
T ss_dssp TTCSEEECCSS
T ss_pred CCCCEEECCCC
Confidence 66666666654
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=206.09 Aligned_cols=107 Identities=22% Similarity=0.208 Sum_probs=73.9
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA- 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~- 573 (795)
....+++|.+..+.+..+ +..+.++++|++|++++|. +....+..|.. +++|++|++++| .+ ..++.
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~l~~~ 118 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-----IQSLALGAFSG-LSSLQKLVAVET-NL----ASLENF 118 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTS-CC----CCSTTC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-----CCccCHhhhcC-cccccccccccc-cc----ccCCCc
Confidence 345677788777776665 4457778888888888776 34444555666 777788887777 44 34443
Q ss_pred ccCCCCCCCeEEcCCCCccc--cCcccCCCCcCcEEeccCCC
Q 044700 574 EIGNLEFLRYLNLSLLKIAE--LPEELCGLWNLQTLELNWCT 613 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~ 613 (795)
.++++++|++|++++|.++. +|..++++++|++|++++|.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 47777777777777777764 57777777777777777764
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=7.1e-19 Score=202.22 Aligned_cols=126 Identities=18% Similarity=0.124 Sum_probs=106.1
Q ss_pred eEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCC
Q 044700 501 SHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEF 580 (795)
Q Consensus 501 ~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~ 580 (795)
+++.+..+.+..+|..+. ++|++|++++|. +....+..|.. +++|++|+|++| .+. ...|..|+++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-----i~~~~~~~~~~-l~~L~~L~Ls~N-~l~---~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-----ISELRMPDISF-LSELRVLRLSHN-RIR---SLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC-----CCCCCGGGTTT-CTTCCEEECCSC-CCC---EECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC-----ccccChhhhcc-CCCccEEECCCC-CCC---cCCHHHhCCCCC
Confidence 778888888888887664 899999999997 45566677888 999999999999 451 344678999999
Q ss_pred CCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCccccc
Q 044700 581 LRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLAS 640 (795)
Q Consensus 581 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~ 640 (795)
|++|+|++|.++.+|.. .+++|++|++++|.... .+|..+.++++|++|++++|.+..
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99999999999999987 89999999999995443 345789999999999999998763
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.5e-19 Score=185.98 Aligned_cols=219 Identities=21% Similarity=0.199 Sum_probs=163.3
Q ss_pred eEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCC
Q 044700 501 SHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEF 580 (795)
Q Consensus 501 ~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~ 580 (795)
+.+.....++..+|..+ .++|++|++++|. +....+..|.. +++|++|+|++| .+. ...|..+.++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~-~~~L~~L~l~~n-~l~---~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-----ISHVPAASFRA-CRNLTILWLHSN-VLA---RIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-----CCEECTTTTTT-CTTCCEEECCSS-CCC---EECTTTTTTCTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-----CCccCHHHccc-CCCCCEEECCCC-ccc---eeCHhhcCCccC
Confidence 34455555566666543 4688999998886 44455556666 889999999988 441 333677888999
Q ss_pred CCeEEcCCCC-cccc-CcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccCCCcCCC
Q 044700 581 LRYLNLSLLK-IAEL-PEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPPE 657 (795)
Q Consensus 581 L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~ 657 (795)
|++|++++|. ++.+ |..+.++++|++|++++|......|..+.++++|++|++++|.+..+|.. ++.+++|
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 155 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------ 155 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc------
Confidence 9999999997 8877 66788899999999998865555567788899999999999988877754 5556555
Q ss_pred CcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCC
Q 044700 658 YLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVT 735 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (795)
+.|++++|....+|. .+..+++|++|++++|.+....+. ++.+++|+.|++++|. ++.++. ..+.
T Consensus 156 --~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----------~~~~ 222 (285)
T 1ozn_A 156 --THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPT----------EALA 222 (285)
T ss_dssp --CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCH----------HHHT
T ss_pred --cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCH----------HHcc
Confidence 889999988877765 477889999999999988776554 8889999999998754 222211 2244
Q ss_pred CCCCcceeeecCCcc
Q 044700 736 YFPRLKSLKFVNMEE 750 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~ 750 (795)
.+++|++|++++++-
T Consensus 223 ~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 223 PLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred cCcccCEEeccCCCc
Confidence 688899999988753
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=2e-18 Score=192.15 Aligned_cols=191 Identities=18% Similarity=0.153 Sum_probs=143.5
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
....++++.+..+.+..+| .+..+++|++|++++|... .. + +.. +++|++|++++| .+ ..++ +
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-----~~-~--~~~-l~~L~~L~Ls~N-~l----~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-----TL-D--LSQ-NTNLTYLACDSN-KL----TNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-----CC-C--CTT-CTTCSEEECCSS-CC----SCCC--C
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-----eE-c--ccc-CCCCCEEECcCC-CC----ceee--c
Confidence 3467899999998888776 7889999999999998732 22 2 556 899999999999 45 4454 8
Q ss_pred CCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcc-cccCcccccccccC---
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTS-LASMPKEIERLTRL--- 651 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L--- 651 (795)
+++++|++|++++|.++.+| ++++++|++|++++|. +..+| +.++++|++|++++|. +..+ .++.+++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 89999999999999999886 8999999999999984 55564 8899999999999993 4444 23333333
Q ss_pred ----------CCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 652 ----------SAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 652 ----------~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
.+..+++|+.|++++|....++ ++.+++|++|++++|.+.+ +| ++.+++|+.|++++|.
T Consensus 176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp ECCSSCCCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred ECCCCccceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc
Confidence 2334556677777766665553 5667777777777777666 34 7777777777777653
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1e-18 Score=204.03 Aligned_cols=135 Identities=20% Similarity=0.175 Sum_probs=115.5
Q ss_pred cccceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-c
Q 044700 496 RRVKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-A 573 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~ 573 (795)
.+..+++|.+..+.+..++ ..|.++++|++|++++|. +..+.+..|.. +++|++|+|++| .+ ..+| .
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~-L~~L~~L~Ls~N-~l----~~l~~~ 118 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQS-LSHLSTLILTGN-PI----QSLALG 118 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTC-CC----CEECGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcC-CCCCCEEEccCC-cC----CCCCHH
Confidence 5678999999999998885 579999999999999997 55666777888 999999999999 56 5666 4
Q ss_pred ccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLASM 641 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~l 641 (795)
.|.++++|++|+|++|.++.+|. .++++++|++|++++|.... .+|..+..+++|++|++++|.+..+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 58999999999999999999876 58999999999999995433 5678899999999999999877644
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=6.2e-19 Score=204.83 Aligned_cols=243 Identities=18% Similarity=0.081 Sum_probs=136.3
Q ss_pred ceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCC
Q 044700 499 KLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNL 578 (795)
Q Consensus 499 ~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l 578 (795)
.++.+.+..+.+..+| .+ .+++|+.|++++|... .. . .+.. +++|++|++++| .+... ...|..+..+
T Consensus 308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~----~~-~--~~~~-l~~L~~L~ls~n-~l~~~-~~~~~~~~~~ 375 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGS----IS-F--KKVA-LPSLSYLDLSRN-ALSFS-GCCSYSDLGT 375 (606)
T ss_dssp CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSC----EE-C--CCCC-CTTCCEEECCSS-CEEEE-EECCHHHHCC
T ss_pred cCCEEEcccccCcccc-cC-CCCccceeeccCCcCc----cc-h--hhcc-CCCCCEEECcCC-ccCCC-cchhhhhccC
Confidence 4555555555554444 33 5555555555555311 00 0 1223 556666666666 23100 1124555566
Q ss_pred CCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCccccc-CcccccccccCCCcCC
Q 044700 579 EFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLAS-MPKEIERLTRLSAQPP 656 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~l~~~ 656 (795)
++|++|++++|.+..+|..+..+++|++|++++|......| ..+.++++|++|++++|.+.. .|..++.+++|
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----- 450 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL----- 450 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-----
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-----
Confidence 66666666666666666666666666666666664444444 345666666666666666554 33444444444
Q ss_pred CCcceEEEeccCCCC--CCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCcc
Q 044700 657 EYLMRLEIRDYRGST--FPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASS 733 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 733 (795)
+.|++++|.... +|..+..+++|+.|+|++|.+.+..|. ++++++|+.|++++|...... |..
T Consensus 451 ---~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~ 516 (606)
T 3vq2_A 451 ---NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-----------SSH 516 (606)
T ss_dssp ---CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-----------GGG
T ss_pred ---CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-----------HHH
Confidence 777777766543 466666777777777777766665544 677777777777765422211 123
Q ss_pred CCCCCCcceeeecCCccccccccccccccc-ccceeeecCCC
Q 044700 734 VTYFPRLKSLKFVNMEEWGDWECEMANVMP-CLCSLSFVYCP 774 (795)
Q Consensus 734 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p-~L~~L~l~~C~ 774 (795)
+..+++|++|++++| .+..++..... +| +|+.|++++||
T Consensus 517 ~~~l~~L~~L~l~~N-~l~~~p~~~~~-l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFN-RIETSKGILQH-FPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECTTS-CCCCEESCGGG-SCTTCCEEECCSCC
T ss_pred ccCCCcCCEEECCCC-cCcccCHhHhh-hcccCcEEEccCCC
Confidence 345677777777776 35555544333 55 47777777764
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.6e-18 Score=197.16 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=80.3
Q ss_pred cccceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
....+++|.+..+.+..+ +..+..+++|++|++++|. +....+..|.. +++|++|+|++| .+.. ...|..
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n-~l~~--~~~~~~ 118 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-----LSSLSSSWFGP-LSSLKYLNLMGN-PYQT--LGVTSL 118 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCSCCHHHHTT-CTTCCEEECTTC-CCSS--SCSSCS
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-----cCccCHHHhcc-CCCCcEEECCCC-cccc--cchhhh
Confidence 345678888887777666 3567788888888888876 44555666766 888888888887 3411 134566
Q ss_pred cCCCCCCCeEEcCCCC-ccccC-cccCCCCcCcEEeccCCCCCCccchhhcc
Q 044700 575 IGNLEFLRYLNLSLLK-IAELP-EELCGLWNLQTLELNWCTNLETLPQGMGK 624 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 624 (795)
++++++|++|++++|. +..+| ..+.++++|++|++++|......|..+.+
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 7777777777777776 55665 36677777777777766544444544433
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=6.1e-19 Score=190.23 Aligned_cols=257 Identities=21% Similarity=0.155 Sum_probs=185.4
Q ss_pred EEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCC
Q 044700 503 LFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLR 582 (795)
Q Consensus 503 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~ 582 (795)
.....+.+..+|..+. ++|++|++++|. +....+..+.. +++|++|+|++| .+. ...|..++++++|+
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~-l~~L~~L~L~~n-~l~---~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR-----ITYISNSDLQR-CVNLQALVLTSN-GIN---TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC-----CCEECTTTTTT-CTTCCEEECTTS-CCC---EECTTTTTTCTTCC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc-----CcccCHHHhcc-CCCCCEEECCCC-ccC---ccCHhhcCCCCCCC
Confidence 3444555666776654 589999999987 44455556777 999999999999 451 33456799999999
Q ss_pred eEEcCCCCccccCcc-cCCCCcCcEEeccCCCCCCccch--hhccCcccceeecCCc-ccccCc-ccccccccCCCcCCC
Q 044700 583 YLNLSLLKIAELPEE-LCGLWNLQTLELNWCTNLETLPQ--GMGKLINLEHLLNVGT-SLASMP-KEIERLTRLSAQPPE 657 (795)
Q Consensus 583 ~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~-~l~~lp-~~i~~L~~L~l~~~~ 657 (795)
+|+|++|.++.+|.. +.++++|++|++++| .+..+|. .+.++++|++|++++| .+..++ ..++.+++|
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L------ 176 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL------ 176 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC------
Confidence 999999999998875 889999999999998 5667776 6889999999999998 466654 456666666
Q ss_pred CcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCC
Q 044700 658 YLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVT 735 (795)
Q Consensus 658 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (795)
+.|++++|....+ |..+..+++|++|++++|.+....+. +..+++|+.|++++|.... .+.... ....
T Consensus 177 --~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l-------~~~~ 246 (353)
T 2z80_A 177 --EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FHFSEL-------STGE 246 (353)
T ss_dssp --EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CCCC-------------
T ss_pred --CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-cccccc-------cccc
Confidence 9999999987665 77888999999999999986443222 4568999999999865221 111100 1123
Q ss_pred CCCCcceeeecCCccccc-----ccccccccccccceeeecCCCCCcCCCCC----CCcceeccC
Q 044700 736 YFPRLKSLKFVNMEEWGD-----WECEMANVMPCLCSLSFVYCPELKALPGI----FLSQVIKPV 791 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~l~~-----~~~~~~~~~p~L~~L~l~~C~~L~~lP~~----L~~L~i~~~ 791 (795)
..+.++.+.+.++. +.. ++... ..+++|+.|++++| +++.+|.. +++|...++
T Consensus 247 ~~~~l~~l~L~~~~-l~~~~l~~l~~~l-~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 247 TNSLIKKFTFRNVK-ITDESLFQVMKLL-NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CCCCCCEEEEESCB-CCHHHHHHHHHHH-HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ccchhhcccccccc-ccCcchhhhHHHH-hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 46677888887763 322 22112 34899999999999 78898853 445544433
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.6e-18 Score=177.45 Aligned_cols=200 Identities=21% Similarity=0.175 Sum_probs=163.4
Q ss_pred CCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCcc-chhhccCc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETL-PQGMGKLI 626 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~ 626 (795)
.+.|++|+|++| .+ ..++ ..+.++++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..++
T Consensus 31 ~~~l~~L~l~~n-~i----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN-RI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTS-CC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCC-cC----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 578999999999 45 4454 5689999999999999999977 678999999999999999646665 77899999
Q ss_pred ccceeecCCcccccCc-ccccccccCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCC
Q 044700 627 NLEHLLNVGTSLASMP-KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLP 703 (795)
Q Consensus 627 ~L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 703 (795)
+|++|++++|.+..++ ..+..+++| +.|++++|....+|. .+..+++|++|+|++|.+....+. +..++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAAL--------QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCC--------CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 9999999999998774 446666655 999999999888765 478999999999999988776654 89999
Q ss_pred ccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 704 SLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 704 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+|+.|++++|.. ..+. +..+..+++|+.|+++++ .+..++......+++|+.|++++|+
T Consensus 178 ~L~~L~l~~n~l-~~~~----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRV-AHVH----------PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCC-CEEC----------TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcc-cccC----------HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 999999998653 2221 233457899999999997 5665554434459999999999885
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=8.9e-18 Score=192.64 Aligned_cols=159 Identities=22% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCC
Q 044700 578 LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPE 657 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~ 657 (795)
+++|++|++++|.++.+|.. +++|++|++++| .+..+|.. +.+|+.|++++|.++.+|.. ++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~l~~~-----------~~ 181 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTSLPML-----------PS 181 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCCCC-----------CT
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCCCCCCCccc-----------CC
Confidence 34444555555554444432 244455555544 23333321 23344444444444443311 23
Q ss_pred CcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCC
Q 044700 658 YLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYF 737 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (795)
+|+.|++++|....+|.. +++|+.|++++|.+... |. .+++|+.|++++|. ++.++ ..+
T Consensus 182 ~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-~~--~~~~L~~L~Ls~N~-L~~lp--------------~~l 240 (622)
T 3g06_A 182 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PA--LPSGLKELIVSGNR-LTSLP--------------VLP 240 (622)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CC--CCTTCCEEECCSSC-CSCCC--------------CCC
T ss_pred CCcEEECCCCCCCCCCCc---cchhhEEECcCCccccc-CC--CCCCCCEEEccCCc-cCcCC--------------CCC
Confidence 456666666665555542 34566666666554432 21 23556666665542 11111 134
Q ss_pred CCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 738 PRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 738 ~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
++|+.|++++| .+..++. .+++|+.|++++| +|+.+|.
T Consensus 241 ~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 241 SELKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCSCCG
T ss_pred CcCcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCcCCH
Confidence 55666666654 3444333 2556666666666 5555553
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=4.7e-18 Score=200.27 Aligned_cols=187 Identities=19% Similarity=0.103 Sum_probs=139.1
Q ss_pred EEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCC
Q 044700 503 LFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLR 582 (795)
Q Consensus 503 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~ 582 (795)
+......+..+|..+. +++++|++++|. +....+..|.. +++|++|+|++|... ...|..++++++|+
T Consensus 9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~ 76 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP--TNITVLNLTHNQ-----LRRLPAANFTR-YSQLTSLDVGFNTIS----KLEPELCQKLPMLK 76 (680)
T ss_dssp EECCSSCCSSCCSCSC--TTCSEEECCSSC-----CCCCCGGGGGG-GTTCSEEECCSSCCC----CCCTTHHHHCTTCC
T ss_pred eECCCCCccccccccC--CCCcEEECCCCC-----CCCcCHHHHhC-CCcCcEEECCCCccC----ccCHHHHhcccCcC
Confidence 4444455666676654 799999999987 45556667888 999999999999432 44567789999999
Q ss_pred eEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-ccccccccCCCcCCCCcc
Q 044700 583 YLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-KEIERLTRLSAQPPEYLM 660 (795)
Q Consensus 583 ~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~L~ 660 (795)
+|+|++|.++.+|. .++++++|++|++++|......|..+.++++|++|++++|.+...+ ..++.+++| +
T Consensus 77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------~ 148 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL--------Q 148 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC--------C
T ss_pred EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC--------C
Confidence 99999999999987 6999999999999999654444567999999999999999988664 446666665 7
Q ss_pred eEEEeccCCCCCCch-hh--hhcCccEEEEeCCCCCCCCCC-CCCCCccCeee
Q 044700 661 RLEIRDYRGSTFPSW-ID--LLSRLTILSLKDWTNCEQLAP-LGNLPSLESLS 709 (795)
Q Consensus 661 ~L~l~~~~~~~lp~~-i~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 709 (795)
.|++++|....++.. +. .+++|++|++++|.+.+..+. ++.+++|+.|+
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 778877776665543 22 346777788877776654443 44444443333
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3e-18 Score=190.58 Aligned_cols=249 Identities=19% Similarity=0.166 Sum_probs=126.0
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCe-------------eeEEecCCCCc
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTT-------------LRALDLSGQSW 563 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~-------------L~~L~L~~~~~ 563 (795)
...++.+.+..+.+..+|..+.++++|++|++++|. ..+.+|..+.. +++ ++.|++++| .
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~-l~~L~~l~l~~c~~~~l~~L~l~~~-~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGE-QREMAVSRLRDCLDRQAHELELNNL-G 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-----HHHTSCTTSCC-CHHHHHHHHHHHHHHTCSEEECTTS-C
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----ccccCCccccc-chhcchhhhhhhhccCCCEEEecCC-c
Confidence 456788888888888889999999999999999875 33334443333 333 588888888 4
Q ss_pred ccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcc
Q 044700 564 YENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPK 643 (795)
Q Consensus 564 ~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~ 643 (795)
+ ..+|.. .++|++|++++|.++.+|.. +.+|++|++++| .+..+|.. .++|++|++++|.+..+|
T Consensus 83 l----~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 83 L----SSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp C----SCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSSCC-
T ss_pred c----ccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCCCc-
Confidence 5 445542 35777777777777777653 356667777666 34444431 146666677666666665
Q ss_pred cccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCc--
Q 044700 644 EIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGN-- 721 (795)
Q Consensus 644 ~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~-- 721 (795)
.++.+++| +.|++++|....+|..+ ++|++|++++|.+.. +|.++++++|+.|++++|.. +.++.
T Consensus 148 ~~~~l~~L--------~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l-~~l~~~~ 214 (454)
T 1jl5_A 148 ELQNSSFL--------KIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL-KKLPDLP 214 (454)
T ss_dssp CCTTCTTC--------CEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SSCCCCC
T ss_pred ccCCCCCC--------CEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcC-CcCCCCc
Confidence 35555544 55555555555454432 355555555555443 34455555555555554431 10100
Q ss_pred --------cccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCCCCCccee
Q 044700 722 --------EFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGIFLSQVI 788 (795)
Q Consensus 722 --------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~L~~L~i 788 (795)
...... .+| .+..+++|++|+++++ .+..++. .+++|+.|++++| +++.+|..+++|+.
T Consensus 215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N-~l~~l~~----~~~~L~~L~l~~N-~l~~l~~~~~~L~~ 281 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN-LLKTLPD----LPPSLEALNVRDN-YLTDLPELPQSLTF 281 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS-CCSSCCS----CCTTCCEEECCSS-CCSCCCCCCTTCCE
T ss_pred CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC-cCCcccc----cccccCEEECCCC-cccccCcccCcCCE
Confidence 000000 122 2456778888888776 3444332 2577888888887 57766654444433
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=6.7e-18 Score=189.71 Aligned_cols=233 Identities=12% Similarity=0.035 Sum_probs=123.4
Q ss_pred cceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
++++.|.+.++.+..+ |..+..+++|++|++++|.. ....+ +.. +++|++|+|++| .+ ..+|.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~~--l~~-l~~L~~L~Ls~N-~l----~~l~~--- 97 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----YETLD--LES-LSTLRTLDLNNN-YV----QELLV--- 97 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-----EEEEE--CTT-CTTCCEEECCSS-EE----EEEEE---
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-----CCCcc--ccc-CCCCCEEEecCC-cC----CCCCC---
Confidence 3566666666665554 34556666666666666552 22222 444 566666666666 34 23332
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccC-ccccc-ccccCCCc
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASM-PKEIE-RLTRLSAQ 654 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~i~-~L~~L~l~ 654 (795)
.++|++|++++|.++.+|.. .+++|++|++++|......|..+.++++|++|++++|.+..+ |..+. .+++|
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--- 171 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---
T ss_pred -CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---
Confidence 25666666666666655432 345666666666644444455566666666666666666542 33332 34433
Q ss_pred CCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccC
Q 044700 655 PPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSV 734 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 734 (795)
+.|++++|....+|.. ..+++|++|+|++|.+...++.++.+++|+.|+|++|. +..+ |..+
T Consensus 172 -----~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~l-----------p~~l 233 (487)
T 3oja_A 172 -----EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLI-----------EKAL 233 (487)
T ss_dssp -----CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEE-----------CTTC
T ss_pred -----cEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Cccc-----------chhh
Confidence 6666666665555432 24666666666666665555556666666666666543 1111 1223
Q ss_pred CCCCCcceeeecCCccc-ccccccccccccccceeeec
Q 044700 735 TYFPRLKSLKFVNMEEW-GDWECEMANVMPCLCSLSFV 771 (795)
Q Consensus 735 ~~~~~L~~L~l~~~~~l-~~~~~~~~~~~p~L~~L~l~ 771 (795)
..+++|+.|++.+|+.. ...+..... ++.|+.|.+.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~-l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTT-CHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHh-CCCCcEEecc
Confidence 34566666666665432 111111122 5555555554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.6e-19 Score=188.81 Aligned_cols=242 Identities=12% Similarity=0.030 Sum_probs=166.3
Q ss_pred ccceeEEEEEeeCCCCCC-ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 497 RVKLSHLFLRVSEGISFP-VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
..++++|.+..+.+..++ ..+..+++|++|++++|.. ....+ +.. +++|++|+|++| .+ ..++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~--~~~-l~~L~~L~Ls~n-~l----~~l~--- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----YETLD--LES-LSTLRTLDLNNN-YV----QELL--- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-----EEEEE--ETT-CTTCCEEECCSS-EE----EEEE---
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-----Ccchh--hhh-cCCCCEEECcCC-cc----cccc---
Confidence 446788888888777664 5677888888888888763 22222 555 788888888888 45 3333
Q ss_pred CCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-ccc-cccccCCC
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-KEI-ERLTRLSA 653 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i-~~L~~L~l 653 (795)
.+++|++|++++|.++.++.. .+++|++|++++|......|..+..+++|++|++++|.+..++ ..+ ..+++|
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-- 171 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-- 171 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC--
T ss_pred -CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC--
Confidence 337888888888888876643 3678888888888544444556788888888888888877654 333 244444
Q ss_pred cCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCcc
Q 044700 654 QPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASS 733 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 733 (795)
+.|++++|....+|... .+++|++|+|++|.+....+.+..+++|+.|++++|. ++.++. .
T Consensus 172 ------~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~-----------~ 232 (317)
T 3o53_A 172 ------EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEK-----------A 232 (317)
T ss_dssp ------CEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECT-----------T
T ss_pred ------CEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhh-----------H
Confidence 88888888877665433 4788888888888877666668888888888888764 333322 2
Q ss_pred CCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcC
Q 044700 734 VTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 734 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
+..+++|+.|++++++............+++|+.|++.+|+.++.
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 346788888888887543122222222378888888886665554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=5.6e-19 Score=186.92 Aligned_cols=236 Identities=17% Similarity=0.120 Sum_probs=172.1
Q ss_pred EEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHh-------hhCCeeeEEecCCCCcccccccccccc
Q 044700 502 HLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLD-------QSRTTLRALDLSGQSWYENMTIKIPAE 574 (795)
Q Consensus 502 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-------~~~~~L~~L~L~~~~~~~~~~~~lp~~ 574 (795)
.+.+..+.+ .+|..+... |+.|++++|... ...++..+. . +++|++|+|++|... ..+|..
T Consensus 47 ~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~----~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~ 114 (312)
T 1wwl_A 47 YLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR----AARIPSRILFGALRVLG-ISGLQELTLENLEVT----GTAPPP 114 (312)
T ss_dssp THHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE----EEECBHHHHHHHHHHHT-TSCCCEEEEEEEBCB----SCCCCC
T ss_pred eEeeccccc-ccHHHHHHH--Hhhccccccccc----CCCcCHHHHHHHHHhcC-cCCccEEEccCCccc----chhHHH
Confidence 333444444 446555544 888888877631 112222222 4 899999999999433 467776
Q ss_pred c--CCCCCCCeEEcCCCCccccCcccCCC-----CcCcEEeccCCCCCCccchhhccCcccceeecCCccccc---Cccc
Q 044700 575 I--GNLEFLRYLNLSLLKIAELPEELCGL-----WNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS---MPKE 644 (795)
Q Consensus 575 i--~~l~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---lp~~ 644 (795)
+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|......|..+.++++|++|++++|.+.. +|..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6 89999999999999999888877776 999999999996555555889999999999999998653 2434
Q ss_pred c--cccccCCCcCCCCcceEEEeccCCCCCCc---h-hhhhcCccEEEEeCCCCCCCC--CCCCCCCccCeeecccccCc
Q 044700 645 I--ERLTRLSAQPPEYLMRLEIRDYRGSTFPS---W-IDLLSRLTILSLKDWTNCEQL--APLGNLPSLESLSLFSMGSV 716 (795)
Q Consensus 645 i--~~L~~L~l~~~~~L~~L~l~~~~~~~lp~---~-i~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l 716 (795)
+ +.+++ |+.|++++|....++. . +..+++|++|+|++|.+.... +.+..+++|+.|+|++|..
T Consensus 195 ~~~~~l~~--------L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l- 265 (312)
T 1wwl_A 195 LCPLKFPT--------LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL- 265 (312)
T ss_dssp SCTTSCTT--------CCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-
T ss_pred HHhccCCC--------CCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-
Confidence 3 45554 4999999998875443 2 246799999999999988765 3477889999999998642
Q ss_pred eeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 717 RKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+.+ |..+ +++|++|+++++ .++.++. ...+++|+.|++++++
T Consensus 266 ~~i-----------p~~~--~~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQV-----------PKGL--PAKLSVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSC-----------CSSC--CSEEEEEECCSS-CCCSCCC--TTTSCEEEEEECTTCT
T ss_pred Chh-----------hhhc--cCCceEEECCCC-CCCCChh--HhhCCCCCEEeccCCC
Confidence 221 2222 279999999997 5666644 3449999999999983
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.8e-17 Score=174.84 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=142.1
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELP 595 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 595 (795)
....+++|++|+++++.. .. ++ .+.. +++|++|+|++| .+ ..++. +.++++|++|+|++|.++.+|
T Consensus 36 ~~~~l~~L~~L~l~~~~i-----~~-l~-~~~~-l~~L~~L~L~~n-~i----~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGV-----TT-IE-GVQY-LNNLIGLELKDN-QI----TDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp CHHHHHTCCEEECTTSCC-----CC-CT-TGGG-CTTCCEEECCSS-CC----CCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred cHHHcCCcCEEEeeCCCc-----cC-ch-hhhc-cCCCCEEEccCC-cC----CCChh-HccCCCCCEEEccCCcCCCch
Confidence 345688888888888762 22 22 2555 888888888888 45 45555 888888888888888888776
Q ss_pred cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCch
Q 044700 596 EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSW 675 (795)
Q Consensus 596 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~ 675 (795)
.+..+++|++|++++| .+..+|. +..+++|++|++++|.+..++. ++.+++| +.|++++|....++.
T Consensus 102 -~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L--------~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNL--------QYLSIGNAQVSDLTP- 168 (308)
T ss_dssp -GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTC--------CEEECCSSCCCCCGG-
T ss_pred -hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCc--------cEEEccCCcCCCChh-
Confidence 6788888888888888 4555654 8888888888888888877765 5555544 888888888777766
Q ss_pred hhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc
Q 044700 676 IDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 676 i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
+..+++|+.|++++|.+... +.+..+++|+.|++++|.. ..+. .+..+++|+.|++.+++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~------------~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQI-SDVS------------PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCC-CBCG------------GGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcC-hhhcCCCCCCEEEccCCcc-Cccc------------cccCCCCCCEEEccCCe
Confidence 77888888888888877543 3477888888888887542 2111 13467888888888764
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.2e-17 Score=173.40 Aligned_cols=199 Identities=19% Similarity=0.147 Sum_probs=83.1
Q ss_pred ceeEEEEEeeCCCCCCc-cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 499 KLSHLFLRVSEGISFPV-SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 499 ~l~~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
.+++|.+..+.+..++. .+.++++|++|++++|. +....+..|.. +++|++|+|++|. +. ...+..+.+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~-l~---~~~~~~~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQS-LSHLSTLILTGNP-IQ---SLALGAFSG 98 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-----CCEECTTTTTT-CTTCCEEECTTCC-CC---EECTTTTTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc-----CCccCHHHccC-CcCCCEEECCCCc-cC---ccChhhhcC
Confidence 44444444444443322 34444455555554443 22222233333 4445555554442 20 112233444
Q ss_pred CCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCC-ccchhhccCcccceeecCCcccccCc-ccccccccCCCc
Q 044700 578 LEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLE-TLPQGMGKLINLEHLLNVGTSLASMP-KEIERLTRLSAQ 654 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~l~ 654 (795)
+++|++|++++|.+..++. .+.++++|++|++++|.... .+|..+.++++|++|++++|.+..++ ..+..+++|.
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 176 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-- 176 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT--
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc--
Confidence 4555555555554444433 34444455555554442222 13444444455555555544444332 2233333220
Q ss_pred CCCCcc-eEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeeccc
Q 044700 655 PPEYLM-RLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFS 712 (795)
Q Consensus 655 ~~~~L~-~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 712 (795)
.+. .|++++|....+|.......+|+.|+|++|.+....+. +..+++|+.|++++
T Consensus 177 ---~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 177 ---LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ---TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ---ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 011 34444444444443333333444444444444333222 34444444444443
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=2.6e-17 Score=171.83 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=145.9
Q ss_pred cceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 498 VKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
..++.+.+..+.+..+|..+. ++++.|++++|. +....+..|.. +++|++|+|++| .+ ..++.. +.
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l----~~~~~~-~~ 75 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-----LYTFSLATLMP-YTRLTQLNLDRA-EL----TKLQVD-GT 75 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-----CSEEEGGGGTT-CTTCCEEECTTS-CC----CEEECC-SC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-----CCccCHHHhhc-CCCCCEEECCCC-cc----CcccCC-CC
Confidence 456677777777777776653 688888888886 44455566777 888888888888 45 445443 67
Q ss_pred CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccCCCcCC
Q 044700 578 LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPP 656 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~ 656 (795)
+++|++|+|++|.++.+|..+.++++|++|++++|......|..+..+++|++|++++|.+..+|.+ +..+++|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----- 150 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----- 150 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-----
Confidence 8888888888888888888888888888888888844333345688888888888888888877765 3445544
Q ss_pred CCcceEEEeccCCCCCCchh-hhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 657 EYLMRLEIRDYRGSTFPSWI-DLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....+|..+ ..+++|++|+|++|.+....+.+..+++|+.|+|++|+
T Consensus 151 ---~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 ---EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 88888888888777654 57888888888888877655557777888888888754
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.7e-17 Score=170.71 Aligned_cols=208 Identities=18% Similarity=0.128 Sum_probs=156.2
Q ss_pred CCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCC
Q 044700 510 GISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSL 588 (795)
Q Consensus 510 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~ 588 (795)
+..+|..+. ++|++|++++|. +....+..|.. +++|++|+|++| .+ ..++ ..+.++++|++|+|++
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-----l~~~~~~~~~~-l~~L~~L~l~~n-~l----~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFS-FPELQVLDLSRC-EI----QTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-----CCEECTTTTTT-CTTCSEEECTTC-CC----CEECTTTTTTCTTCCEEECTT
T ss_pred ccccCCCCC--CCccEEECCCCc-----ccccCHhHhcc-ccCCcEEECCCC-cC----CccCHHHccCCcCCCEEECCC
Confidence 334455443 579999999887 34444556667 899999999998 45 3444 4688899999999999
Q ss_pred CCccccC-cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc--CcccccccccCCCcCCCCcceEEEe
Q 044700 589 LKIAELP-EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS--MPKEIERLTRLSAQPPEYLMRLEIR 665 (795)
Q Consensus 589 ~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~l~~~~~L~~L~l~ 665 (795)
|.++.++ ..+.++++|++|++++|......+..+.++++|++|++++|.+.. +|..++.+++| +.|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------~~L~Ls 157 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------EHLDLS 157 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC--------CEEECC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC--------CEEECC
Confidence 9998775 578899999999999985444444468899999999999998876 67778777766 899999
Q ss_pred ccCCCCCC-chhhhhcCcc----EEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCc
Q 044700 666 DYRGSTFP-SWIDLLSRLT----ILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRL 740 (795)
Q Consensus 666 ~~~~~~lp-~~i~~l~~L~----~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 740 (795)
+|....++ ..+..+++|+ .|++++|.+....+......+|+.|++++|. ++.++. ..+..+++|
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----------~~~~~l~~L 226 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD----------GIFDRLTSL 226 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT----------TTTTTCCSC
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH----------hHhcccccc
Confidence 99887765 4566777777 8899999887766665556689999998754 332221 223468889
Q ss_pred ceeeecCCc
Q 044700 741 KSLKFVNME 749 (795)
Q Consensus 741 ~~L~l~~~~ 749 (795)
+.|++++++
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999998874
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.9e-17 Score=169.88 Aligned_cols=148 Identities=28% Similarity=0.306 Sum_probs=71.7
Q ss_pred eeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccccCcc-cCCCCcCcEEeccCCCCCCccc-hhhccCccc
Q 044700 552 TLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAELPEE-LCGLWNLQTLELNWCTNLETLP-QGMGKLINL 628 (795)
Q Consensus 552 ~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L 628 (795)
.|+.|+|++| .+ ..++ ..+.++++|++|+|++|.++.+|.. +.++++|++|++++|. +..+| ..+..+++|
T Consensus 38 ~l~~L~l~~n-~l----~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 38 DTKKLDLQSN-KL----SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNL 111 (270)
T ss_dssp TCSEEECCSS-CC----SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSC
T ss_pred CCCEEECcCC-CC----CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCC
Confidence 4555555555 23 2222 2455555555555555555555443 2445555555555552 22332 234455555
Q ss_pred ceeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCC-CCCCCcc
Q 044700 629 EHLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSL 705 (795)
Q Consensus 629 ~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 705 (795)
++|++++|.+..+|.. ++.+++| +.|++++|....+|.. +..+++|++|+|++|.+....+. +..+++|
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L--------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKL--------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CEEECCCCccCeeCHHHhCcCcCC--------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 5555555555544432 2333333 5555555555444433 34555555555555555443332 5555555
Q ss_pred Ceeecccc
Q 044700 706 ESLSLFSM 713 (795)
Q Consensus 706 ~~L~L~~~ 713 (795)
+.|+|++|
T Consensus 184 ~~L~L~~N 191 (270)
T 2o6q_A 184 KTLKLDNN 191 (270)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555553
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.8e-17 Score=175.67 Aligned_cols=218 Identities=15% Similarity=0.072 Sum_probs=166.3
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE 596 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~ 596 (795)
+..+++|++|++++|. +....+..|.. +++|++|+|++| .+ ...+. +..+++|++|++++|.++.+|.
T Consensus 30 ~~~~~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n-~l----~~~~~-~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-----LSQISAADLAP-FTKLELLNLSSN-VL----YETLD-LESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp HTTGGGCSEEECTTSC-----CCCCCHHHHTT-CTTCCEEECTTS-CC----EEEEE-ETTCTTCCEEECCSSEEEEEEE
T ss_pred hccCCCCCEEECcCCc-----cCcCCHHHhhC-CCcCCEEECCCC-cC----Ccchh-hhhcCCCCEEECcCCccccccC
Confidence 4457799999999987 45566677877 999999999999 44 33443 8899999999999999987763
Q ss_pred ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcc-cccccccCCCcCCCCcceEEEeccCCCCC-Cc
Q 044700 597 ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPK-EIERLTRLSAQPPEYLMRLEIRDYRGSTF-PS 674 (795)
Q Consensus 597 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~ 674 (795)
.++|++|++++|. +..++. ..+++|++|++++|.+..++. .++.+++| +.|++++|....+ |.
T Consensus 98 ----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 98 ----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV--------QYLDLKLNEIDTVNFA 162 (317)
T ss_dssp ----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSE--------EEEECTTSCCCEEEGG
T ss_pred ----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCC--------CEEECCCCCCCcccHH
Confidence 3899999999984 455543 246889999999999987754 55666655 9999999987765 34
Q ss_pred hh-hhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccc
Q 044700 675 WI-DLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGD 753 (795)
Q Consensus 675 ~i-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 753 (795)
.+ ..+++|++|+|++|.+... +....+++|+.|++++|. ++.++.. +..+++|+.|++++| .+..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------~~~l~~L~~L~L~~N-~l~~ 228 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE-----------FQSAAGVTWISLRNN-KLVL 228 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG-----------GGGGTTCSEEECTTS-CCCE
T ss_pred HHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCc-CCcchhh-----------hcccCcccEEECcCC-cccc
Confidence 44 4789999999999987654 455568999999999864 3333322 346889999999997 5666
Q ss_pred ccccccccccccceeeecCCCCCc
Q 044700 754 WECEMANVMPCLCSLSFVYCPELK 777 (795)
Q Consensus 754 ~~~~~~~~~p~L~~L~l~~C~~L~ 777 (795)
++..... +++|+.|++++|+ +.
T Consensus 229 l~~~~~~-l~~L~~L~l~~N~-~~ 250 (317)
T 3o53_A 229 IEKALRF-SQNLEHFDLRGNG-FH 250 (317)
T ss_dssp ECTTCCC-CTTCCEEECTTCC-CB
T ss_pred hhhHhhc-CCCCCEEEccCCC-cc
Confidence 6554434 8999999999994 44
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.9e-18 Score=194.19 Aligned_cols=216 Identities=15% Similarity=0.059 Sum_probs=170.3
Q ss_pred ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCccc
Q 044700 519 EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEEL 598 (795)
Q Consensus 519 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i 598 (795)
.+++|++|++++|. +....+..|.. +++|++|+|++| .+ ...++ ++.+++|++|+|++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~Ls~N-~l----~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNP-----LSQISAADLAP-FTKLELLNLSSN-VL----YETLD-LESLSTLRTLDLNNNYVQELLVG- 98 (487)
T ss_dssp TGGGCCEEECCSSC-----CCCCCGGGGTT-CTTCCEEECTTS-CC----EEEEE-CTTCTTCCEEECCSSEEEEEEEC-
T ss_pred cCCCccEEEeeCCc-----CCCCCHHHHhC-CCCCCEEEeeCC-CC----CCCcc-cccCCCCCEEEecCCcCCCCCCC-
Confidence 45599999999997 45566677877 999999999999 45 33343 89999999999999999988743
Q ss_pred CCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCc-ccccccccCCCcCCCCcceEEEeccCCCCC-Cchh
Q 044700 599 CGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMP-KEIERLTRLSAQPPEYLMRLEIRDYRGSTF-PSWI 676 (795)
Q Consensus 599 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~~i 676 (795)
++|++|++++|. +..+|. ..+++|++|++++|.+..++ ..++.+++| +.|++++|....+ |..+
T Consensus 99 ---~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 99 ---PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV--------QYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp ---TTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSE--------EEEECTTSCCCEEEGGGG
T ss_pred ---CCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCC--------CEEECCCCCCCCcChHHH
Confidence 899999999995 444443 24689999999999998764 467777766 9999999987764 5566
Q ss_pred h-hhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccccc
Q 044700 677 D-LLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWE 755 (795)
Q Consensus 677 ~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 755 (795)
. .+++|+.|+|++|.+... +.+..+++|+.|+|++|. ++.++. .+..+++|+.|++++| .+..++
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~lp 230 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGP-----------EFQSAAGVTWISLRNN-KLVLIE 230 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECG-----------GGGGGTTCSEEECTTS-CCCEEC
T ss_pred hhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCH-----------hHcCCCCccEEEecCC-cCcccc
Confidence 5 799999999999987655 556679999999999864 333322 2446899999999997 566666
Q ss_pred ccccccccccceeeecCCCCC
Q 044700 756 CEMANVMPCLCSLSFVYCPEL 776 (795)
Q Consensus 756 ~~~~~~~p~L~~L~l~~C~~L 776 (795)
..... +++|+.|++++|+-.
T Consensus 231 ~~l~~-l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRF-SQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCC-CTTCCEEECTTCCBC
T ss_pred hhhcc-CCCCCEEEcCCCCCc
Confidence 55444 899999999999533
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.3e-17 Score=173.92 Aligned_cols=189 Identities=23% Similarity=0.308 Sum_probs=160.3
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...++++.+..+.+..++ .+..+++|++|++++|.. ....+ +.. +++|++|+|++| .+ ..++ .+.
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-----~~~~~--~~~-l~~L~~L~L~~n-~l----~~~~-~~~ 104 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-----TDLAP--LKN-LTKITELELSGN-PL----KNVS-AIA 104 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-----CCCGG--GTT-CCSCCEEECCSC-CC----SCCG-GGT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-----CCChh--Hcc-CCCCCEEEccCC-cC----CCch-hhc
Confidence 457889999888887765 688999999999999873 33333 666 999999999999 46 4454 688
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPP 656 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~ 656 (795)
++++|++|++++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|++++|.+..++. +..+++|
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L----- 175 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKL----- 175 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTC-----
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCC-----
Confidence 99999999999999999875 899999999999999 5666665 8999999999999999988876 6666655
Q ss_pred CCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 657 EYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....++. +..+++|++|+|++|.+.... .+..+++|+.|++++|+
T Consensus 176 ---~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 ---TTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ---CEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ---CEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 999999999888876 789999999999999887654 58999999999999865
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.1e-17 Score=167.62 Aligned_cols=201 Identities=17% Similarity=0.126 Sum_probs=122.1
Q ss_pred CeeeEEecCCCCccccccccccc-ccCCCCCCCeEEcCCCC-ccccCc-ccCCCCcCcEEeccCCCCCCccc-hhhccCc
Q 044700 551 TTLRALDLSGQSWYENMTIKIPA-EIGNLEFLRYLNLSLLK-IAELPE-ELCGLWNLQTLELNWCTNLETLP-QGMGKLI 626 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~ 626 (795)
+.|++|++++| .+ ..+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+| ..+.+++
T Consensus 31 ~~l~~L~l~~n-~l----~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET-HL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESC-CC----SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEeCC-cc----eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 45677777776 34 34443 56677777777777775 666654 56677777777777622444544 3466777
Q ss_pred ccceeecCCcccccCcccccccccCCCcCCCCcceEEEecc-CCCCCCc-hhhhhcCcc-EEEEeCCCCCCCCCCCCCCC
Q 044700 627 NLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDY-RGSTFPS-WIDLLSRLT-ILSLKDWTNCEQLAPLGNLP 703 (795)
Q Consensus 627 ~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~-~~~~lp~-~i~~l~~L~-~L~L~~~~~~~~l~~l~~l~ 703 (795)
+|++|++++|.+..+|. ++.+++|. .|+.|++++| ....+|. .+..+++|+ .|++++|.+....+.....+
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~-----~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTD-----IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCC-----SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred CCCEEeCCCCCCccccc-cccccccc-----cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 77777777777776665 55555541 1237777777 6655554 356677777 77777777663333322336
Q ss_pred ccCeeecccccCceeeCccccCCCCCCCccCCCC-CCcceeeecCCcccccccccccccccccceeeecCCCCC
Q 044700 704 SLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYF-PRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPEL 776 (795)
Q Consensus 704 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L 776 (795)
+|+.|++++|..++.++... +..+ ++|+.|+++++ .+..++.. .+++|+.|.+.+|..|
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~----------~~~l~~~L~~L~l~~N-~l~~l~~~---~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDA----------FGGVYSGPSLLDVSQT-SVTALPSK---GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEEECTTCTTCCEECTTT----------TTTCSBCCSEEECTTC-CCCCCCCT---TCTTCSEEECTTC---
T ss_pred CCCEEEcCCCCCcccCCHHH----------hhccccCCcEEECCCC-ccccCChh---HhccCceeeccCccCC
Confidence 77777777765454443322 2245 77777777775 44444433 2777777777777543
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=1.1e-16 Score=178.11 Aligned_cols=232 Identities=22% Similarity=0.275 Sum_probs=153.5
Q ss_pred cceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 498 VKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
..++.+.+..+.+..+| .+..+++|++|++++|.. .. +|.. ..+|++|++++| .+ ..+| .+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l-----~~-lp~~----~~~L~~L~L~~n-~l----~~l~-~~~~ 193 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL-----KK-LPDL----PPSLEFIAAGNN-QL----EELP-ELQN 193 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-----SC-CCCC----CTTCCEEECCSS-CC----SSCC-CCTT
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC-----cc-cCCC----cccccEEECcCC-cC----CcCc-cccC
Confidence 57888888888887776 588888899999888863 22 2221 457888899888 45 4566 5888
Q ss_pred CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCC
Q 044700 578 LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPE 657 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~ 657 (795)
+++|++|++++|.++.+|... .+|++|++++| .+..+|. +..+++|++|++++|.+..+|..+.
T Consensus 194 l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~----------- 257 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP----------- 257 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCT-----------
T ss_pred CCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCccccccc-----------
Confidence 899999999999888877543 58888999888 4557884 8888899999999988887775432
Q ss_pred CcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCC--CCC--------------CCCCC-CccCeeecccccCceeeC
Q 044700 658 YLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCE--QLA--------------PLGNL-PSLESLSLFSMGSVRKVG 720 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~l~--------------~l~~l-~~L~~L~L~~~~~l~~~~ 720 (795)
+|+.|++++|....+|.+ +++|++|++++|.+.+ .+| .+..+ ++|+.|++++|.
T Consensus 258 ~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~------ 328 (454)
T 1jl5_A 258 SLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK------ 328 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC------
T ss_pred ccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc------
Confidence 335555555555555443 2455555555555433 111 01112 355555555432
Q ss_pred ccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcC---CCCCCCcc
Q 044700 721 NEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKA---LPGIFLSQ 786 (795)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~---lP~~L~~L 786 (795)
+.+. | ..+++|++|++++| .+..++. .+++|+.|++++| +++. +|.++..|
T Consensus 329 --l~~l----p---~~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 329 --LIEL----P---ALPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDL 382 (454)
T ss_dssp --CSCC----C---CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEE
T ss_pred --cccc----c---ccCCcCCEEECCCC-ccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhh
Confidence 1111 1 13678888888887 4555544 3788999999988 5555 55666544
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=7.6e-17 Score=166.88 Aligned_cols=201 Identities=22% Similarity=0.192 Sum_probs=133.9
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELP 595 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 595 (795)
....+++|+.|.+.++.. .. ++ .+.. +++|++|+|++| .+ ..+ ..++++++|++|++++|.++.+|
T Consensus 36 ~~~~l~~L~~L~l~~~~i-----~~-~~-~l~~-l~~L~~L~l~~n-~l----~~~-~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDI-----KS-VQ-GIQY-LPNVRYLALGGN-KL----HDI-SALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp CHHHHTTCCEEECTTSCC-----CC-CT-TGGG-CTTCCEEECTTS-CC----CCC-GGGTTCTTCCEEECTTSCCCCCC
T ss_pred ccccccceeeeeeCCCCc-----cc-cc-cccc-CCCCcEEECCCC-CC----CCc-hhhcCCCCCCEEECCCCccCccC
Confidence 355777888888877752 11 11 2445 788888888887 34 333 36777888888888888888766
Q ss_pred c-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCC
Q 044700 596 E-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFP 673 (795)
Q Consensus 596 ~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp 673 (795)
. .+.++++|++|++++|......|..+.++++|++|++++|.+..+|.. ++.+++| +.|++++|....+|
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL--------TELDLSYNQLQSLP 173 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC--------CEEECCCCCcCccC
Confidence 5 457788888888888754433344467788888888888877776654 3455544 77888777776665
Q ss_pred ch-hhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccc
Q 044700 674 SW-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEW 751 (795)
Q Consensus 674 ~~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 751 (795)
.. +..+++|++|++++|.+....+. ++.+++|+.|++++|+ +.+ .+++|+.|.++.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--------~~~----------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP--------WDC----------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC--------BCC----------CTTTTHHHHHHHHHTG
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC--------ccc----------cCcHHHHHHHHHHhCC
Confidence 43 46777788888888777765554 6777778888777643 212 4666777777665433
Q ss_pred ccccc
Q 044700 752 GDWEC 756 (795)
Q Consensus 752 ~~~~~ 756 (795)
..++.
T Consensus 236 g~ip~ 240 (272)
T 3rfs_A 236 GVVRN 240 (272)
T ss_dssp GGBBC
T ss_pred CcccC
Confidence 34443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.3e-16 Score=163.03 Aligned_cols=196 Identities=27% Similarity=0.322 Sum_probs=157.5
Q ss_pred CeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchh-hccCccc
Q 044700 551 TTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQG-MGKLINL 628 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L 628 (795)
..++.++++++ .+ ..+|..+. ++|++|+|++|.++.+|. .+.++++|++|++++| .+..+|.. +.++++|
T Consensus 16 ~~~~~l~~~~~-~l----~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 16 NNKNSVDCSSK-KL----TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTTEEECTTS-CC----SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTC
T ss_pred CCCCEEEccCC-CC----CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCC
Confidence 45788999988 56 56776554 689999999999998875 7999999999999998 45566655 5889999
Q ss_pred ceeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCcc
Q 044700 629 EHLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSL 705 (795)
Q Consensus 629 ~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 705 (795)
++|++++|.+..+|.. +..+++| +.|++++|....+|. .+..+++|++|+|++|.+....+. ++.+++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNL--------AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCcCCcCCHhHcccccCC--------CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 9999999999988764 4555555 999999999888765 467999999999999998876655 8999999
Q ss_pred CeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 706 ESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 706 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+.|++++|. ++.++. ..+..+++|++|+++++ .+..++......+++|+.|++++||
T Consensus 160 ~~L~L~~n~-l~~~~~----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNNQ-LKRVPE----------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSC-CSCCCT----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecCCc-CcEeCh----------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 999999864 222211 23457899999999997 5666665545558999999999875
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.9e-16 Score=165.23 Aligned_cols=199 Identities=23% Similarity=0.157 Sum_probs=160.8
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELP 595 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 595 (795)
.+.++++++++++.++.. ..+.+. + .+.+++|+|++|. +. ...+..+.++++|++|+|++|.++.+|
T Consensus 5 ~~~~l~~l~~l~~~~~~l-----~~ip~~-~---~~~l~~L~L~~N~-l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL-----TALPPD-L---PKDTTILHLSENL-LY---TFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp EEECSTTCCEEECTTSCC-----SSCCSC-C---CTTCCEEECTTSC-CS---EEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cccccCCccEEECCCCCC-----CcCCCC-C---CCCCCEEEcCCCc-CC---ccCHHHhhcCCCCCEEECCCCccCccc
Confidence 356789999999998762 332222 2 4679999999994 41 344577999999999999999999887
Q ss_pred cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcc-cccccccCCCcCCCCcceEEEeccCCCCCCc
Q 044700 596 EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPK-EIERLTRLSAQPPEYLMRLEIRDYRGSTFPS 674 (795)
Q Consensus 596 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~ 674 (795)
.. +.+++|++|++++| .+..+|..+..+++|++|++++|.++.+|. .+..+++| +.|++++|....+|.
T Consensus 72 ~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------QELYLKGNELKTLPP 141 (290)
T ss_dssp CC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------CEEECTTSCCCCCCT
T ss_pred CC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------CEEECCCCCCCccCh
Confidence 65 89999999999998 677899999999999999999999998875 46666665 999999999888876
Q ss_pred h-hhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc
Q 044700 675 W-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 675 ~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
. +..+++|+.|+|++|.+....+. +..+++|+.|+|++|. ++.+ |..+..+++|+.|.+.+++
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~i-----------p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTI-----------PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCC-----------CTTTTTTCCCSEEECCSCC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCcc-----------ChhhcccccCCeEEeCCCC
Confidence 5 46899999999999998866554 7889999999999854 2222 2334457789999999876
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=5.7e-17 Score=164.41 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=155.1
Q ss_pred CCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-ccCCCCCCCeEEcCC
Q 044700 510 GISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA-EIGNLEFLRYLNLSL 588 (795)
Q Consensus 510 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~ 588 (795)
...+|. +. ++|+.|++++|. +....+..|.. +++|++|++++|..+ ..++. .+.++++|++|++++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-----l~~i~~~~~~~-l~~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-----LRTIPSHAFSN-LPNISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-----CSEECTTTTTT-CTTCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEE
T ss_pred ccccCC-CC--CcccEEEEeCCc-----ceEECHHHccC-CCCCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCC
Confidence 555565 33 489999999887 44555556777 899999999998435 45554 688899999999998
Q ss_pred -CCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccc---eeecCCc-ccccCccc-ccccccCCCcCCCCcc-
Q 044700 589 -LKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLE---HLLNVGT-SLASMPKE-IERLTRLSAQPPEYLM- 660 (795)
Q Consensus 589 -~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~l~~~~~L~- 660 (795)
|.++.+|. .+.++++|++|++++| .+..+|. +..+++|+ +|++++| .+..+|.. +..+++| +
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L--------~~ 159 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--------TL 159 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS--------EE
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc--------ee
Confidence 89998874 6788999999999998 4566886 78888888 9999999 88888764 5666655 8
Q ss_pred eEEEeccCCCCCCchhhhhcCccEEEEeCCC-CCCCCCC-CCCC-CccCeeecccccCceeeCccccCCCCCCCccCCCC
Q 044700 661 RLEIRDYRGSTFPSWIDLLSRLTILSLKDWT-NCEQLAP-LGNL-PSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYF 737 (795)
Q Consensus 661 ~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-~~~~l~~-l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (795)
.|++++|....+|......++|+.|+|++|. +....+. +..+ ++|+.|+++++. ++.+ +. ..|
T Consensus 160 ~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l-------~~------~~~ 225 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTAL-------PS------KGL 225 (239)
T ss_dssp EEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCC-------CC------TTC
T ss_pred EEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccC-------Ch------hHh
Confidence 8999999888888766655899999999995 6544333 7888 999999998743 2222 11 268
Q ss_pred CCcceeeecCCcc
Q 044700 738 PRLKSLKFVNMEE 750 (795)
Q Consensus 738 ~~L~~L~l~~~~~ 750 (795)
++|+.|.+.++..
T Consensus 226 ~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 226 EHLKELIARNTWT 238 (239)
T ss_dssp TTCSEEECTTC--
T ss_pred ccCceeeccCccC
Confidence 8999999988643
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4.8e-18 Score=181.89 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=181.3
Q ss_pred eeEEEEEeeCCCCCCcccccc--CcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 500 LSHLFLRVSEGISFPVSVSEV--QNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 500 l~~l~l~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
.+++.+..+.+. +..+..+ ++++.|.+.+|.. ....+. +.. +++|++|+|++|. +.. ..+|..+.+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-----~~~~~~-~~~-~~~L~~L~L~~~~-l~~--~~~~~~~~~ 116 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-----DQPLAE-HFS-PFRVQHMDLSNSV-IEV--STLHGILSQ 116 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-----CSCCCS-CCC-CBCCCEEECTTCE-ECH--HHHHHHHTT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccc-----cccchh-hcc-CCCCCEEEccCCC-cCH--HHHHHHHhh
Confidence 456666555443 4556666 8999999998863 333333 334 8999999999994 421 227778899
Q ss_pred CCCCCeEEcCCCCcc-ccCcccCCCCcCcEEeccCCCCCC--ccchhhccCcccceeecCCc-cccc--Ccccccccc-c
Q 044700 578 LEFLRYLNLSLLKIA-ELPEELCGLWNLQTLELNWCTNLE--TLPQGMGKLINLEHLLNVGT-SLAS--MPKEIERLT-R 650 (795)
Q Consensus 578 l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~L~-~ 650 (795)
+++|++|+|++|.++ ..|..++.+++|++|++++|..+. .+|..+.++++|++|++++| .++. ++..++.++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 999999999999988 677889999999999999995555 37777899999999999999 8874 566666666 6
Q ss_pred CCCcCCCCcceEEEeccC--C--CCCCchhhhhcCccEEEEeCCC-CCC-CCCCCCCCCccCeeecccccCceeeCcccc
Q 044700 651 LSAQPPEYLMRLEIRDYR--G--STFPSWIDLLSRLTILSLKDWT-NCE-QLAPLGNLPSLESLSLFSMGSVRKVGNEFL 724 (795)
Q Consensus 651 L~l~~~~~L~~L~l~~~~--~--~~lp~~i~~l~~L~~L~L~~~~-~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 724 (795)
| +.|++++|. . ..+|..+..+++|++|++++|. +.. .++.++++++|+.|++++|..+...+.
T Consensus 197 L--------~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--- 265 (336)
T 2ast_B 197 I--------TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL--- 265 (336)
T ss_dssp C--------CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---
T ss_pred C--------CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---
Confidence 5 999999984 2 3457777899999999999998 443 455688999999999999863322111
Q ss_pred CCCCCCCccCCCCCCcceeeecCCcccccccccccccc-cccceeeecCCCCCcC-CCCC
Q 044700 725 GIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVM-PCLCSLSFVYCPELKA-LPGI 782 (795)
Q Consensus 725 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-p~L~~L~l~~C~~L~~-lP~~ 782 (795)
..+..+++|++|++.+| +...... . + .+|..|++++| +++. .|..
T Consensus 266 -------~~l~~~~~L~~L~l~~~--i~~~~~~--~-l~~~l~~L~l~~n-~l~~~~~~~ 312 (336)
T 2ast_B 266 -------LELGEIPTLKTLQVFGI--VPDGTLQ--L-LKEALPHLQINCS-HFTTIARPT 312 (336)
T ss_dssp -------GGGGGCTTCCEEECTTS--SCTTCHH--H-HHHHSTTSEESCC-CSCCTTCSS
T ss_pred -------HHHhcCCCCCEEeccCc--cCHHHHH--H-HHhhCcceEEecc-cCccccCCc
Confidence 12346999999999998 3322111 1 3 34777778766 6776 4543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.2e-16 Score=165.41 Aligned_cols=202 Identities=22% Similarity=0.195 Sum_probs=121.9
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
+++|+.|++++| .+ ..++ .++.+++|++|++++|.++.++ .+..+++|++|++++|......|..+.++++|+
T Consensus 40 l~~L~~L~l~~~-~i----~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNS-DI----KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTS-CC----CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCC-Cc----cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 566777777776 34 3332 4666777777777777776654 566777777777777643333333456777777
Q ss_pred eeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCC-CCCCCccC
Q 044700 630 HLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSLE 706 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~ 706 (795)
+|++++|.+..+|.. ++.+++| +.|++++|....+|.. +..+++|++|++++|.+....+. ++.+++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNL--------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCcCCccCHHHhccCCCC--------CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 777777777666544 3445544 7777777766666543 45677777777777766654443 56777777
Q ss_pred eeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCCCCCcCCCCCCCc
Q 044700 707 SLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPGIFLS 785 (795)
Q Consensus 707 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~~L~~ 785 (795)
.|++++|.. +.+. +..+..+++|+.|++.+|+. .+ . +|+|+.|.++++.--..+|..+..
T Consensus 185 ~L~L~~N~l-~~~~----------~~~~~~l~~L~~L~l~~N~~----~~---~-~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 185 DLRLYQNQL-KSVP----------DGVFDRLTSLQYIWLHDNPW----DC---T-CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp EEECCSSCC-SCCC----------TTTTTTCTTCCEEECCSSCB----CC---C-TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred EEECCCCcC-CccC----------HHHHhCCcCCCEEEccCCCc----cc---c-CcHHHHHHHHHHhCCCcccCcccc
Confidence 777776431 1111 12234567777777777632 11 1 666777776666333345554443
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=3.1e-16 Score=179.83 Aligned_cols=215 Identities=21% Similarity=0.134 Sum_probs=149.4
Q ss_pred cceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 498 VKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
.+++.|.+..+.+..+|. .+++|++|++++|.. .. ++. . +++|+.|++++| .+ ..+|..
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-----~~-l~~---~-l~~L~~L~L~~N-~l----~~lp~~--- 139 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-----TH-LPA---L-PSGLCKLWIFGN-QL----TSLPVL--- 139 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-----CC-CCC---C-CTTCCEEECCSS-CC----SCCCCC---
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-----CC-CCC---C-CCCcCEEECCCC-CC----CcCCCC---
Confidence 445555555555554443 445555666655542 11 111 2 566777777766 34 445543
Q ss_pred CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCC
Q 044700 578 LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPE 657 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~ 657 (795)
+++|++|+|++|.++.+|.. +.+|+.|++++| .+..+| ..+++|++|++++|.+..+|..+ +
T Consensus 140 l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~-----------~ 201 (622)
T 3g06_A 140 PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLASLPTLP-----------S 201 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCCCC-----------T
T ss_pred CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCCCCCcc-----------c
Confidence 48999999999999998863 578999999998 567788 45789999999999998887643 3
Q ss_pred CcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCC
Q 044700 658 YLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYF 737 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (795)
+|+.|++++|....+|.. +++|+.|+|++|.+.. +| ..+++|+.|+|++|. ++.++ . .+
T Consensus 202 ~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp-----------~---~~ 260 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLP-----------M---LP 260 (622)
T ss_dssp TCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCC-----------C---CC
T ss_pred hhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCC-----------c---cc
Confidence 457888888888877753 4788899998887765 34 566888889888753 22221 1 46
Q ss_pred CCcceeeecCCcccccccccccccccccceeeecCCC
Q 044700 738 PRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 738 ~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
++|+.|++++| .+..++..... +++|+.|++++|+
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~-l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIH-LSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGG-SCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCHHHhh-ccccCEEEecCCC
Confidence 78888888887 56666544434 8888888888885
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=8.2e-17 Score=170.20 Aligned_cols=193 Identities=20% Similarity=0.114 Sum_probs=97.4
Q ss_pred cceeEEEEEeeCCCC-CCccc--cccCcceEEeeccCCCcccchhhhhhhHHhhhC-----CeeeEEecCCCCccccccc
Q 044700 498 VKLSHLFLRVSEGIS-FPVSV--SEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSR-----TTLRALDLSGQSWYENMTI 569 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~-~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~ 569 (795)
..+++|.+..+.+.. +|..+ ..+++|++|++++|.. ... |..+.. + ++|++|+|++|. +. .
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~-~~~~~~-l~~~~~~~L~~L~L~~N~-l~---~ 163 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-----ATR-DAWLAE-LQQWLKPGLKVLSIAQAH-SL---N 163 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-----SSS-SSHHHH-HHTTCCTTCCEEEEESCS-CC---C
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-----cch-hHHHHH-HHHhhcCCCcEEEeeCCC-Cc---c
Confidence 345566666665542 34443 5566666666666542 222 233333 3 556666666662 30 2
Q ss_pred ccccccCCCCCCCeEEcCCCCccc---cCccc--CCCCcCcEEeccCCCCCCcc---chh-hccCcccceeecCCccccc
Q 044700 570 KIPAEIGNLEFLRYLNLSLLKIAE---LPEEL--CGLWNLQTLELNWCTNLETL---PQG-MGKLINLEHLLNVGTSLAS 640 (795)
Q Consensus 570 ~lp~~i~~l~~L~~L~L~~~~l~~---lp~~i--~~L~~L~~L~L~~~~~~~~l---p~~-i~~l~~L~~L~l~~~~l~~ 640 (795)
..|..++++++|++|+|++|.+.. +|..+ .++++|++|++++|. +..+ +.. +.++++|++|++++|.+..
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 223455666666666666665432 23333 556666666666653 3322 212 2345566666666665554
Q ss_pred Cc--ccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccc
Q 044700 641 MP--KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSM 713 (795)
Q Consensus 641 lp--~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 713 (795)
.+ ..+..++ +|+.|++++|....+|.++. ++|++|+|++|.+.+. |.+..+++|+.|++++|
T Consensus 243 ~~~~~~~~~l~--------~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 243 AAGAPSCDWPS--------QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCCSCCCCCT--------TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred ccchhhhhhcC--------CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence 33 1222222 23556666655555555444 5566666666555443 33555555555555543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=1.6e-18 Score=189.32 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=174.1
Q ss_pred CCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc-------CCCCCCCeE
Q 044700 512 SFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI-------GNLEFLRYL 584 (795)
Q Consensus 512 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i-------~~l~~L~~L 584 (795)
.++..+..+++|++|++++|..... ....+...+.. +++|++|+|++| .++.+...+|..+ .++++|++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~-~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTE-AARWLSENIAS-KKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHH-HHHHHHHTTTT-CTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHH-HHHHHHHHHHh-CCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 4466778899999999999863211 11123344556 899999999998 4544444555544 789999999
Q ss_pred EcCCCCccc-----cCcccCCCCcCcEEeccCCCCCC----ccchhhccC---------cccceeecCCcccc--cCc--
Q 044700 585 NLSLLKIAE-----LPEELCGLWNLQTLELNWCTNLE----TLPQGMGKL---------INLEHLLNVGTSLA--SMP-- 642 (795)
Q Consensus 585 ~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l---------~~L~~L~l~~~~l~--~lp-- 642 (795)
+|++|.++. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|.+. .+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999999885 78888999999999999995432 233344455 89999999999886 344
Q ss_pred -ccccccccCCCcCCCCcceEEEeccCCC------CCCchhhhhcCccEEEEeCCCCC----CCCCC-CCCCCccCeeec
Q 044700 643 -KEIERLTRLSAQPPEYLMRLEIRDYRGS------TFPSWIDLLSRLTILSLKDWTNC----EQLAP-LGNLPSLESLSL 710 (795)
Q Consensus 643 -~~i~~L~~L~l~~~~~L~~L~l~~~~~~------~lp~~i~~l~~L~~L~L~~~~~~----~~l~~-l~~l~~L~~L~L 710 (795)
..+..+++| +.|++++|... -+|.++..+++|++|+|++|.+. ..++. +..+++|+.|+|
T Consensus 180 ~~~l~~~~~L--------~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 180 AKTFQSHRLL--------HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp HHHHHHCTTC--------CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHhCCCc--------CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 344455544 99999999876 13336778999999999999874 33433 788999999999
Q ss_pred ccccCceeeCccccCCCCCCCccC--CCCCCcceeeecCCccccc-----ccccccccccccceeeecCCCCCcC
Q 044700 711 FSMGSVRKVGNEFLGIKSGIASSV--TYFPRLKSLKFVNMEEWGD-----WECEMANVMPCLCSLSFVYCPELKA 778 (795)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~p~L~~L~l~~C~~L~~ 778 (795)
++|.. +..+... ++..+ ..+++|++|++++|. +.. ++......+|+|+.|++++| .++.
T Consensus 252 ~~n~i-~~~~~~~------l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 252 NDCLL-SARGAAA------VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp TTCCC-CHHHHHH------HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred CCCCC-chhhHHH------HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 98752 2111100 11112 248999999999984 443 43333234899999999999 4554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=5.3e-18 Score=181.56 Aligned_cols=198 Identities=21% Similarity=0.227 Sum_probs=144.4
Q ss_pred cceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhh-hhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISE-VLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
..++.+.+..+.+...+..+..+++|++|++++|. +.. .++..+.. +++|++|+|++|. +. ...|..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~-~~~L~~L~L~~~~-l~---~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQ-CSKLQNLSLEGLR-LS---DPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTT-BCCCSEEECTTCB-CC---HHHHHHHT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhh-CCCCCEEeCcCcc-cC---HHHHHHHh
Confidence 56777877777666665566778889999988875 232 25666777 8889999998884 31 45677788
Q ss_pred CCCCCCeEEcCCC-Ccc--ccCcccCCCCcCcEEeccCCCCCCc--cchhhccCc-ccceeecCCcc--c--ccCccccc
Q 044700 577 NLEFLRYLNLSLL-KIA--ELPEELCGLWNLQTLELNWCTNLET--LPQGMGKLI-NLEHLLNVGTS--L--ASMPKEIE 646 (795)
Q Consensus 577 ~l~~L~~L~L~~~-~l~--~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~i~~l~-~L~~L~l~~~~--l--~~lp~~i~ 646 (795)
++++|++|+|++| .++ .+|..+.++++|++|++++|..+.. +|..+..++ +|++|++++|. + ..+|..+.
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 8888999999888 676 3677778888899999988833432 677788888 89999998884 3 34555556
Q ss_pred ccccCCCcCCCCcceEEEeccC-CC-CCCchhhhhcCccEEEEeCCCCCC--CCCCCCCCCccCeeecccc
Q 044700 647 RLTRLSAQPPEYLMRLEIRDYR-GS-TFPSWIDLLSRLTILSLKDWTNCE--QLAPLGNLPSLESLSLFSM 713 (795)
Q Consensus 647 ~L~~L~l~~~~~L~~L~l~~~~-~~-~lp~~i~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 713 (795)
.+++| +.|++++|. .. ..+..+..+++|++|++++|.... .+..++++++|+.|++++|
T Consensus 220 ~~~~L--------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNL--------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTC--------SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCC--------CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66655 888888887 32 346677788889999998885221 2224778888999998876
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=165.18 Aligned_cols=223 Identities=15% Similarity=0.077 Sum_probs=160.8
Q ss_pred cCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc--CCCCCCCeEEcCCCCccc-cC-
Q 044700 520 VQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI--GNLEFLRYLNLSLLKIAE-LP- 595 (795)
Q Consensus 520 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i--~~l~~L~~L~L~~~~l~~-lp- 595 (795)
...++.+.+.++........... ..+ . +++|+.|+|++|... ...|..+ +++++|++|+|++|.++. .|
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~-~~~-~-~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGAL-RVL-A-YSRLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHH-HHH-H-HSCCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hcceeEEEEeCCcCCHHHHHHHH-Hhc-c-cCceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 34567777777653221112211 212 2 567999999999543 5667777 899999999999999984 23
Q ss_pred ---cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc---Cccc--ccccccCCCcCCCCcceEEEecc
Q 044700 596 ---EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS---MPKE--IERLTRLSAQPPEYLMRLEIRDY 667 (795)
Q Consensus 596 ---~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---lp~~--i~~L~~L~l~~~~~L~~L~l~~~ 667 (795)
..+..+++|++|++++|......|..+.++++|++|++++|.+.. ++.. ++.++ +|+.|++++|
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~--------~L~~L~Ls~N 207 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP--------AIQNLALRNT 207 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC--------CCCSCBCCSS
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC--------CCCEEECCCC
Confidence 345679999999999996656666789999999999999998653 3222 23444 4599999999
Q ss_pred CCCCCCch----hhhhcCccEEEEeCCCCCCCCC-CCCCC---CccCeeecccccCceeeCccccCCCCCCCccCCCCCC
Q 044700 668 RGSTFPSW----IDLLSRLTILSLKDWTNCEQLA-PLGNL---PSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPR 739 (795)
Q Consensus 668 ~~~~lp~~----i~~l~~L~~L~L~~~~~~~~l~-~l~~l---~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 739 (795)
....++.. +..+++|++|+|++|.+....| .++.+ ++|++|+|++|.. +.+ |.. .+++
T Consensus 208 ~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~l-----------p~~--~~~~ 273 (310)
T 4glp_A 208 GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL-EQV-----------PKG--LPAK 273 (310)
T ss_dssp CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSC-----------CSC--CCSC
T ss_pred CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC-Cch-----------hhh--hcCC
Confidence 88766553 4678999999999999988744 35555 7999999998642 222 121 2479
Q ss_pred cceeeecCCcccccccccccccccccceeeecCCC
Q 044700 740 LKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 740 L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
|+.|++++| .+..++. ...+|+|+.|++++++
T Consensus 274 L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 274 LRVLDLSSN-RLNRAPQ--PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCEECCSC-CCCSCCC--TTSCCCCSCEECSSTT
T ss_pred CCEEECCCC-cCCCCch--hhhCCCccEEECcCCC
Confidence 999999997 5665543 2448999999999984
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=167.28 Aligned_cols=198 Identities=18% Similarity=0.056 Sum_probs=86.0
Q ss_pred eeEEEEEeeCCCCC-Cccc--cccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 500 LSHLFLRVSEGISF-PVSV--SEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 500 l~~l~l~~~~~~~~-~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
++++.+..+.+... |..+ ..+++|++|++++|...... .......+.. +++|++|+|++|... ...|..++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~-~~~L~~L~Ls~n~l~----~~~~~~~~ 166 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR-SWLAELQQWL-KPGLKVLSIAQAHSP----AFSCEQVR 166 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT-SSHHHHHTTB-CSCCCEEEEECCSSC----CCCTTSCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh-hhhHHHHhhh-ccCCCEEEeeCCCcc----hhhHHHhc
Confidence 45555555544322 3333 45555555555555421100 0000011222 455555555555221 22234455
Q ss_pred CCCCCCeEEcCCCCccc---cCc--ccCCCCcCcEEeccCCCCCCccchh----hccCcccceeecCCcccccC-ccccc
Q 044700 577 NLEFLRYLNLSLLKIAE---LPE--ELCGLWNLQTLELNWCTNLETLPQG----MGKLINLEHLLNVGTSLASM-PKEIE 646 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~---lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~l~~L~~L~l~~~~l~~l-p~~i~ 646 (795)
++++|++|+|++|.+.. ++. .+..+++|++|++++| .+..+|.. +..+++|++|++++|.+..+ |..++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 55555555555555432 221 2244555555555555 23333321 24445555555555555443 44443
Q ss_pred ccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccc
Q 044700 647 RLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFS 712 (795)
Q Consensus 647 ~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 712 (795)
.+.. +++|+.|++++|....+|..+. ++|+.|+|++|.+.+. |.+..+++|+.|+|++
T Consensus 246 ~~~~-----~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 246 RCMW-----SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCC-----CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSS
T ss_pred hccC-----cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcC
Confidence 3321 1233555555555544544432 4555555555544332 2244445555555544
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=1.8e-15 Score=176.59 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=104.1
Q ss_pred CCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcC
Q 044700 509 EGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLS 587 (795)
Q Consensus 509 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~ 587 (795)
+...+|..+. ++++.|++++|. +..+.+..|.. +++|++|+|++| .+ ..+| ..|.+|++|++|+|+
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~-----i~~l~~~~f~~-l~~L~~L~Ls~N-~i----~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFS-FPELQVLDLSRC-EI----QTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSC-----CCEECTTTTTT-CTTCCEEECTTC-CC----CEECTTTTTTCTTCCEEECT
T ss_pred CcCccCCCCC--cCCCEEEeeCCC-----CCCCCHHHHhC-CCCCCEEECCCC-cC----CCcChhHhcCCCCCCEEEcc
Confidence 3455676553 479999999997 56666777888 999999999999 56 5565 468999999999999
Q ss_pred CCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCccccc--CcccccccccC
Q 044700 588 LLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTSLAS--MPKEIERLTRL 651 (795)
Q Consensus 588 ~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L 651 (795)
+|+++.+|. .|.+|++|++|++++|. +..+|. .|+++++|++|++++|.+.. +|..++.+++|
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 999999986 68999999999999994 555554 58999999999999998874 45555555544
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=3.7e-15 Score=164.17 Aligned_cols=292 Identities=12% Similarity=0.044 Sum_probs=184.1
Q ss_pred CceeecchhHHHHHHHH-hC---C-CCCCcEEEE--EcCCCChHHHHHHHHhcCcchh---ccCc-eeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKL-LS---S-STEIPIISI--LGTEGTGKTTLATLAYNSYKVM---RYFD-IRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 214 (795)
..++||++++++|.++| .. . ......+.| +|++|+||||||+.+++..... ..|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 68999999999999998 42 1 013456667 9999999999999999843211 0122 46788887778899
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCC------hhhHHHHHHhhcCC---C--C
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIED------NSTWESLLQTLQEG---R--P 281 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~------~~~~~~l~~~l~~~---~--~ 281 (795)
.++..++.+++..... ...+..++...+...+. +++++|||||++.-. .+.+..+...+... + .
T Consensus 102 ~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 9999999999764321 23344556666666664 689999999996521 23444443333321 2 3
Q ss_pred CcEEEEEcCChHHHHhh-----------CCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcC------
Q 044700 282 GSKILVTTDDQSIADKI-----------GSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCH------ 344 (795)
Q Consensus 282 gs~iivTtR~~~va~~~-----------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~------ 344 (795)
...+|+||+...+.... ...+.+++++.++++++|...+...... ..-..+..+.|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCC
Confidence 45588888766543211 1118999999999999997654211110 0111456778899999
Q ss_pred CCchHHHHHhhhc------CC--C-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccC--CCcc
Q 044700 345 DLPLLIKIVGRTL------HF--K-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFP--KDYL 413 (795)
Q Consensus 345 G~PLai~~lg~~L------~~--~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~ 413 (795)
|.|..+..+.... .. . +...+..++..... ...+.-++..||.+.+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9997655544321 11 1 44445444432110 23455678899999999999888764 2334
Q ss_pred cChhHHHHHHH--H---cCCCC-hhhhhhHHHHHHHHccccccc
Q 044700 414 INKDELIRSWM--A---QGYVH-KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 414 i~~~~li~~W~--a---~g~i~-~~~~~~~~~~~L~~~sll~~~ 451 (795)
++...+...+. + .|.-. .......++++|.+.+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 55555554442 2 12211 134566789999999999876
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=8.3e-15 Score=157.50 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=179.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCC------CHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADS------DVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~ 219 (795)
..||||++++++|.+++... +++.|+|++|+|||||++++++. . + .+|+++.... +...+++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHHHH
Confidence 68999999999999998763 79999999999999999999973 2 2 7788765432 56667777
Q ss_pred HHHHhcCC--------------cccCCCCCCChHHHHHHHHHhcCC-CeEEEEEeCCCCCCh-------hhHHHHHHhhc
Q 044700 220 IAEALGAS--------------ASAFSSQGQELEPYLRYIRKSIAR-NRFILVIDDVWIEDN-------STWESLLQTLQ 277 (795)
Q Consensus 220 i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdvw~~~~-------~~~~~l~~~l~ 277 (795)
+...+... ....+.......++...+...... ++++||+||++..+. ..+..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 76665430 000000123456666666665542 389999999965321 22333433332
Q ss_pred CCCCCcEEEEEcCChHHHHhh-----------C--C-cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHc
Q 044700 278 EGRPGSKILVTTDDQSIADKI-----------G--S-TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQC 343 (795)
Q Consensus 278 ~~~~gs~iivTtR~~~va~~~-----------~--~-~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c 343 (795)
. ..+.++|+|++........ + . .+++.+|+.+|+.+++....-..+. .. -.+.+..|++.|
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~---~~~~~~~i~~~t 235 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DV---PENEIEEAVELL 235 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHH
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHh
Confidence 2 2578899998876542211 1 1 2889999999999999765311111 11 134678999999
Q ss_pred CCCchHHHHHhhhcCC-CCHHHHHH-HHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHH
Q 044700 344 HDLPLLIKIVGRTLHF-KTEKEWQS-ILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIR 421 (795)
Q Consensus 344 ~G~PLai~~lg~~L~~-~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~ 421 (795)
+|+|+++..++..+.. .+...+.. +.+.....+ ...+. .+.+ + ++..+..+..+|. . .++...+..
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---~l~~-~-~~~~~~~l~~la~--g--~~~~~~l~~ 303 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---MGELE---ELRR-R-SPRYVDILRAIAL--G--YNRWSLIRD 303 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHH---HHHH-H-CHHHHHHHHHHHT--T--CCSHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---HHHHH---HHHh-C-ChhHHHHHHHHHh--C--CCCHHHHHH
Confidence 9999999999875432 22222221 111100000 00111 0111 1 6778888888887 2 234455544
Q ss_pred HHHHc-CCCChhhhhhHHHHHHHHcccccccccccCCCCCcEEeeccCHHHHHHHH
Q 044700 422 SWMAQ-GYVHKEAVGQMCFDQMVARSWFQKFEFEEDDDDGRILRCKMPVQVHKFVR 476 (795)
Q Consensus 422 ~W~a~-g~i~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~~ 476 (795)
..-+. |-+. ......+++.|.+.+++... .+.+. -.|++++.+.+
T Consensus 304 ~~~~~~~~~~-~~~~~~~l~~L~~~gli~~~-------~~~y~--~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIP-EPRLYALLENLKKMNWIVEE-------DNTYK--IADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCC-HHHHHHHHHHHHHTTSEEEE-------TTEEE--ESSHHHHHHHT
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHhCCCEEec-------CCEEE--EecHHHHHHHc
Confidence 43221 1112 45567899999999999875 33333 45888887754
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=4e-15 Score=151.88 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=78.9
Q ss_pred CeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 551 TTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
+.|+.|+|++|. +. ...+..+.++++|++|+|++|.++.++. .+.++++|++|++++|......|..+..+++|+
T Consensus 35 ~~l~~L~L~~n~-l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTG-LA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSC-CC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEccCCC-cC---ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 345555555552 21 2223345555566666666665554433 345555666666655533222223345555666
Q ss_pred eeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCccC
Q 044700 630 HLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLE 706 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~ 706 (795)
+|++++|.+..+|.. ++.+++| +.|++++|....+|. .+..+++|++|+|++|.+....+. +..+++|+
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKL--------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEEcCCCcCCCcChhHhccCCcc--------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 666666655555443 2333333 555555555555544 355566666666666665544442 55666666
Q ss_pred eeecccc
Q 044700 707 SLSLFSM 713 (795)
Q Consensus 707 ~L~L~~~ 713 (795)
.|+|++|
T Consensus 183 ~L~l~~N 189 (251)
T 3m19_A 183 TITLFGN 189 (251)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 6666654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=2.5e-15 Score=153.38 Aligned_cols=175 Identities=22% Similarity=0.221 Sum_probs=142.0
Q ss_pred eeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCC
Q 044700 500 LSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLE 579 (795)
Q Consensus 500 l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 579 (795)
.+++.+..+.+..+|..+. ++++.|++++|. +....+..|.. +++|++|+|++| .+. ...+..+.+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n-~l~---~~~~~~~~~l~ 83 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-----LATLSDATFRG-LTKLTWLNLDYN-QLQ---TLSAGVFDDLT 83 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-----CCCCCTTTTTT-CTTCCEEECTTS-CCC---CCCTTTTTTCT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCC-----cCccCHhHhcC-cccCCEEECCCC-cCC---ccCHhHhccCC
Confidence 4556666677777777664 689999999987 45555666777 999999999999 441 34455689999
Q ss_pred CCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccccCcc-cccccccCCCcCC
Q 044700 580 FLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLASMPK-EIERLTRLSAQPP 656 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~l~~~ 656 (795)
+|++|+|++|.++.+|. .+..+++|++|+|++|. +..+|.. +.++++|++|++++|.+..+|. .++.+++|
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----- 157 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL----- 157 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-----
Confidence 99999999999998875 67899999999999994 5556554 7899999999999999998887 46666666
Q ss_pred CCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCC
Q 044700 657 EYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQ 695 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~ 695 (795)
+.|++++|....+|. .+..+++|++|+|++|.+...
T Consensus 158 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 ---QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999888865 577899999999999987544
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=2.2e-15 Score=157.33 Aligned_cols=170 Identities=25% Similarity=0.324 Sum_probs=122.1
Q ss_pred ccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc
Q 044700 517 VSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE 596 (795)
Q Consensus 517 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~ 596 (795)
+..+++|+.|++++|.. ... +. +.. +++|++|+|++| .+ ..++. ++++++|++|++++|.++.+|.
T Consensus 42 ~~~l~~L~~L~l~~~~i-----~~~-~~-~~~-l~~L~~L~L~~n-~l----~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-----KSV-QG-IQY-LPNVTKLFLNGN-KL----TDIKP-LANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp HHHHHTCCEEECTTSCC-----CCC-TT-GGG-CTTCCEEECCSS-CC----CCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred hhhcCcccEEEccCCCc-----ccC-hh-Hhc-CCCCCEEEccCC-cc----CCCcc-cccCCCCCEEECCCCcCCCChh
Confidence 45677888888877752 222 22 455 788888888888 45 44544 7788888888888888877664
Q ss_pred ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchh
Q 044700 597 ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWI 676 (795)
Q Consensus 597 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i 676 (795)
+..+++|++|++++| .+..++ .+..+++|++|++++|.+..+ ..++.+++| +.|++++|....++. +
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L--------~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKL--------DTLSLEDNQISDIVP-L 174 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTC--------SEEECCSSCCCCCGG-G
T ss_pred -hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCC--------CEEEccCCccccchh-h
Confidence 778888888888887 445553 577788888888888877766 455555555 888888887777665 7
Q ss_pred hhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 677 DLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 677 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
..+++|+.|++++|.+.. ++.+..+++|+.|++++|+
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 778888888888887654 4557788888888887754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=5.7e-15 Score=158.73 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=84.2
Q ss_pred cceeEEEEEeeCCCCCCc-cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeE-EecCCCCccccccccc-ccc
Q 044700 498 VKLSHLFLRVSEGISFPV-SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRA-LDLSGQSWYENMTIKI-PAE 574 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~L~~~~~~~~~~~~l-p~~ 574 (795)
.++++|.+..+.+..++. .|.++++|++|++++|.. .....+..|.. ++++.. +.+.+| .+ ..+ |..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i----~~~i~~~~f~~-L~~l~~~l~~~~N-~l----~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSN-LPKLHEIRIEKAN-NL----LYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT----CCEECTTSBCS-CTTCCEEEEEEET-TC----CEECTTS
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC----CCccChhHhhc-chhhhhhhcccCC-cc----cccCchh
Confidence 445555555555555543 355555555555555541 01111223333 444332 333333 23 222 344
Q ss_pred cCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchh-hccCc-ccceeecCCcccccCcccccccccC
Q 044700 575 IGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQG-MGKLI-NLEHLLNVGTSLASMPKEIERLTRL 651 (795)
Q Consensus 575 i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L 651 (795)
|.++++|++|++++|.+..+|. .+....++..|++.++..+..+|.. +..+. .|++|++++|.++.+|.......+|
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 5555555555555555555443 2334445555555544444444432 33332 4555555555555555544443333
Q ss_pred CCcCCCCcceEEEec-cCCCCCCch-hhhhcCccEEEEeCCCCCC
Q 044700 652 SAQPPEYLMRLEIRD-YRGSTFPSW-IDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~-~~~~~lp~~-i~~l~~L~~L~L~~~~~~~ 694 (795)
+.|.+.+ +....+|.. +..+++|+.|+|++|.+..
T Consensus 180 --------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 180 --------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp --------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred --------hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 5555542 344445432 3455555555555555443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.4e-15 Score=154.35 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=139.7
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
+++|+.|++++| .+ ..++ .+..+++|++|+|++|.++.++. +.++++|++|++++| .+..+|. +..+++|+
T Consensus 45 l~~L~~L~l~~~-~i----~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNS-DI----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTS-CC----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCC
T ss_pred cCcccEEEccCC-Cc----ccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCC
Confidence 788999999999 56 4554 48889999999999999999887 999999999999998 4666664 99999999
Q ss_pred eeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeee
Q 044700 630 HLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLS 709 (795)
Q Consensus 630 ~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 709 (795)
+|++++|.+..++ .+..+++| +.|++++|....+ ..+..+++|+.|++++|.+....+ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L--------~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQL--------ESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTC--------CEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred EEECCCCcCCCCh-hhcCCCCC--------CEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE
Confidence 9999999998874 56666655 9999999998877 578899999999999998876555 99999999999
Q ss_pred cccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc
Q 044700 710 LFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 710 L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
+++|. ++.++ .+..+++|+.|++++++
T Consensus 185 L~~N~-i~~l~------------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 185 LSKNH-ISDLR------------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSC-CCBCG------------GGTTCTTCSEEEEEEEE
T ss_pred CCCCc-CCCCh------------hhccCCCCCEEECcCCc
Confidence 99864 22221 24578999999999874
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=9.4e-15 Score=157.00 Aligned_cols=236 Identities=15% Similarity=0.082 Sum_probs=169.0
Q ss_pred eEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccCCCC
Q 044700 501 SHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIGNLE 579 (795)
Q Consensus 501 ~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 579 (795)
+.+....+++..+|..+ .+++++|++++|. +..+.+..|.. +++|++|+|++|... ..+| ..|.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-----i~~i~~~~f~~-l~~L~~L~Ls~N~i~----~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-----LRVIQKGAFSG-FGDLEKIEISQNDVL----EVIEADVFSNLP 79 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-----CSEECTTSSTT-CTTCCEEEEECCTTC----CEECTTSBCSCT
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-----CCCcCHHHHcC-CCCCCEEECcCCCCC----CccChhHhhcch
Confidence 34555666677777766 3688999999887 45555566777 899999999998544 4455 3577888
Q ss_pred CCCe-EEcCCCCccccC-cccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCC-cccccCccc-ccccccCCCc
Q 044700 580 FLRY-LNLSLLKIAELP-EELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVG-TSLASMPKE-IERLTRLSAQ 654 (795)
Q Consensus 580 ~L~~-L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~l~ 654 (795)
+|+. +.+++|+++.+| ..+..+++|++|++++|. +..+| ..+....++..|++.+ +.+..+|.. +..+.
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----- 153 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----- 153 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-----
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcc-----
Confidence 8765 566778888874 567889999999999884 44444 3455667788888865 466666543 23322
Q ss_pred CCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC--CCCCCccCeeecccccCceeeCccccCCCCCCCc
Q 044700 655 PPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP--LGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIAS 732 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 732 (795)
..++.|++++|....+|.......+|+.|++++|.....+|. +.++++|+.|+|++|. ++.++.
T Consensus 154 --~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----------- 219 (350)
T 4ay9_X 154 --FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----------- 219 (350)
T ss_dssp --SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-----------
T ss_pred --hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-----------
Confidence 235788999999888888777778899999987666666654 7899999999998853 333221
Q ss_pred cCCCCCCcceeeecCCcccccccccccccccccceeeecC
Q 044700 733 SVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVY 772 (795)
Q Consensus 733 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~ 772 (795)
..|.+|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 220 --~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 --YGLENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp --SSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred --hhhccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 2577888888888888877763 23488999998865
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=3.6e-14 Score=152.96 Aligned_cols=291 Identities=11% Similarity=0.066 Sum_probs=174.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-----CCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-----SDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 220 (795)
..||||+++++.|.+ +.. +++.|+|++|+|||||++++++. ... ..+|+++... .+...+...+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 689999999999999 654 69999999999999999999983 322 2578887643 3455555555
Q ss_pred HHHhcC-------------Cc-----ccC--C-----CCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh---hhHHHH
Q 044700 221 AEALGA-------------SA-----SAF--S-----SQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN---STWESL 272 (795)
Q Consensus 221 ~~~l~~-------------~~-----~~~--~-----~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~---~~~~~l 272 (795)
.+.+.. .. +.. . ........+...+.+.-. ++++|||||++..+. .+|..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 544421 00 000 0 012345556666655433 499999999955321 223333
Q ss_pred HHhhcCCCCCcEEEEEcCChHHHHhh-----------C--Cc-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHH
Q 044700 273 LQTLQEGRPGSKILVTTDDQSIADKI-----------G--ST-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRK 338 (795)
Q Consensus 273 ~~~l~~~~~gs~iivTtR~~~va~~~-----------~--~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~ 338 (795)
...+.....+.++|+|+|........ + .. +++.+|+.+++.+++....-..+. .. .. ...
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~----~~~ 234 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KD----YEV 234 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CC----HHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-Cc----HHH
Confidence 23332223477899999987542211 1 12 889999999999999875421111 11 11 178
Q ss_pred HHHHcCCCchHHHHHhhhcCCC-CHHHHHHH-Hhhhccccccccccccceeeecc--CCChHHHHHHhhhhcccCCCccc
Q 044700 339 IVQQCHDLPLLIKIVGRTLHFK-TEKEWQSI-LDSKMWQVQYIERHHFVPLWLSF--TDMPFAVRMCFLYCAIFPKDYLI 414 (795)
Q Consensus 339 i~~~c~G~PLai~~lg~~L~~~-~~~~w~~~-l~~~~~~~~~~~~~~~~~l~~sy--~~L~~~~k~cfl~~a~fp~~~~i 414 (795)
|++.|+|+|+++..++..+... +...|..- .+.....+ ...+. .+.+ ..|++..+..+..+|+-+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---~~~~~~~~l~~~~~~~l~~la~g~----- 303 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI---LKEFE---NFLHGREIARKRYLNIMRTLSKCG----- 303 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHH---HHHTTCGGGHHHHHHHHHHHTTCB-----
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---HHHHH---HHhhccccccHHHHHHHHHHHcCC-----
Confidence 9999999999999998765432 33334321 11100000 00011 0111 168889999999999821
Q ss_pred ChhHHHHHHH-HcCC-CChhhhhhHHHHHHHHcccccccccccCCCCCcEEeeccCHHHHHHH
Q 044700 415 NKDELIRSWM-AQGY-VHKEAVGQMCFDQMVARSWFQKFEFEEDDDDGRILRCKMPVQVHKFV 475 (795)
Q Consensus 415 ~~~~li~~W~-a~g~-i~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~c~mHdlv~d~~ 475 (795)
+...+....- ..|. +. ......+++.|++.+++... .+ .|. -.|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~-~~~~~~~L~~L~~~gli~~~-------~~-~y~-f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEIS-DSEIYNYLTQLTKHSWIIKE-------GE-KYC-PSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCC-HHHHHHHHHHHHHTTSEEES-------SS-CEE-ESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhCCCEEec-------CC-EEE-ecCHHHHHhh
Confidence 4444433211 1231 22 34567899999999999865 23 341 3588888764
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=8.8e-15 Score=167.59 Aligned_cols=171 Identities=25% Similarity=0.311 Sum_probs=132.3
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELP 595 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 595 (795)
.+..+++|+.|.+++|.. .. ++ .+.. +++|+.|+|++| .+ ..++. ++++++|++|+|++|.+..+|
T Consensus 38 ~~~~L~~L~~L~l~~n~i-----~~-l~-~l~~-l~~L~~L~Ls~N-~l----~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDI-----KS-VQ-GIQY-LPNVTKLFLNGN-KL----TDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp CHHHHTTCCCCBCTTCCC-----CC-CT-TGGG-CTTCCEEECTTS-CC----CCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred chhcCCCCCEEECcCCCC-----CC-Ch-HHcc-CCCCCEEEeeCC-CC----CCChh-hccCCCCCEEECcCCCCCCCh
Confidence 356788888898888763 22 22 2555 888999999988 45 44554 788899999999999888876
Q ss_pred cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCch
Q 044700 596 EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSW 675 (795)
Q Consensus 596 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~ 675 (795)
.+..+++|++|+|++|. +..+| .+..+++|++|+|++|.+..+ ..++.+++| +.|++++|....++.
T Consensus 104 -~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L--------~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKL--------DTLSLEDNQISDIVP- 170 (605)
T ss_dssp -TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTC--------SEEECCSSCCCCCGG-
T ss_pred -hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCC--------CEEECcCCcCCCchh-
Confidence 68888999999999884 55554 588889999999999988776 455555555 888998888877766
Q ss_pred hhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 676 IDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 676 i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|+
T Consensus 171 l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 7888899999999887765 4668888899999998765
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.4e-16 Score=173.98 Aligned_cols=257 Identities=12% Similarity=0.046 Sum_probs=174.3
Q ss_pred cceeEEEEEeeCCCCC-----CccccccCcceEEeeccCCCcccchhhhhh-------hHHhhhCCeeeEEecCCCCccc
Q 044700 498 VKLSHLFLRVSEGISF-----PVSVSEVQNLRSLRIQYGSKTCSLISEVLP-------KLLDQSRTTLRALDLSGQSWYE 565 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-------~~~~~~~~~L~~L~L~~~~~~~ 565 (795)
..+++|.+..+.+... +..+..+++|++|++++|.... +...+| ..+.. +++|++|+|++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--l~~~~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--VKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGP 108 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS--CGGGSHHHHHHHHHHHTT-CTTCCEEECCSCCCCT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc--cccchhHHHHHHHHHHhh-CCcccEEECCCCcCCH
Confidence 4578888877766542 3346789999999999874211 222222 33456 8999999999994321
Q ss_pred ccccccccccCCCCCCCeEEcCCCCcc-----ccCcccCCC---------CcCcEEeccCCCCC-Cccc---hhhccCcc
Q 044700 566 NMTIKIPAEIGNLEFLRYLNLSLLKIA-----ELPEELCGL---------WNLQTLELNWCTNL-ETLP---QGMGKLIN 627 (795)
Q Consensus 566 ~~~~~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~L---------~~L~~L~L~~~~~~-~~lp---~~i~~l~~ 627 (795)
.....+|..+.++++|++|+|++|.++ .++..+..+ ++|++|++++|... ..+| ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 101137778889999999999999987 234445455 89999999999644 3455 46778999
Q ss_pred cceeecCCcccc------cCcccccccccCCCcCCCCcceEEEeccCC-----CCCCchhhhhcCccEEEEeCCCCCCC-
Q 044700 628 LEHLLNVGTSLA------SMPKEIERLTRLSAQPPEYLMRLEIRDYRG-----STFPSWIDLLSRLTILSLKDWTNCEQ- 695 (795)
Q Consensus 628 L~~L~l~~~~l~------~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~-----~~lp~~i~~l~~L~~L~L~~~~~~~~- 695 (795)
|++|++++|.+. -+|..+..+++| +.|++++|.. ..+|..+..+++|++|+|++|.+...
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L--------~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQEL--------KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTC--------CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCc--------cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 999999999886 123355565555 9999999987 45677888999999999999987653
Q ss_pred ---CCC-C--CCCCccCeeecccccCceeeCccccCCCCCCCccC-CCCCCcceeeecCCccccccc--ccccccccccc
Q 044700 696 ---LAP-L--GNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSV-TYFPRLKSLKFVNMEEWGDWE--CEMANVMPCLC 766 (795)
Q Consensus 696 ---l~~-l--~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~--~~~~~~~p~L~ 766 (795)
++. + +.+++|+.|+|++|..-.. +.. .++..+ ..+++|++|++++|+.-...+ ......+|+++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~-g~~------~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELD-AVR------TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHH-HHH------HHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHH-HHH------HHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 232 4 5599999999998753220 000 011122 357999999999985333221 11222366666
Q ss_pred eeeecC
Q 044700 767 SLSFVY 772 (795)
Q Consensus 767 ~L~l~~ 772 (795)
.+.+..
T Consensus 334 ~~~l~~ 339 (386)
T 2ca6_A 334 RGELDE 339 (386)
T ss_dssp CCEECC
T ss_pred cchhhh
Confidence 555543
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=4e-16 Score=174.65 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=120.6
Q ss_pred cceeEEEEEeeCCCC-----CCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCC----eeeEEecCCCCccccc-
Q 044700 498 VKLSHLFLRVSEGIS-----FPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRT----TLRALDLSGQSWYENM- 567 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~- 567 (795)
+.++.+.+..+.+.. ++..+..+++|++|++++|. +.......+...++ +|++|+|++|. +...
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAG 101 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHH
Confidence 456777777777652 24556677888888888776 22222222222244 68888888883 4110
Q ss_pred ccccccccCCCCCCCeEEcCCCCcccc-----Ccc-cCCCCcCcEEeccCCCCCC----ccchhhccCcccceeecCCcc
Q 044700 568 TIKIPAEIGNLEFLRYLNLSLLKIAEL-----PEE-LCGLWNLQTLELNWCTNLE----TLPQGMGKLINLEHLLNVGTS 637 (795)
Q Consensus 568 ~~~lp~~i~~l~~L~~L~L~~~~l~~l-----p~~-i~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~ 637 (795)
...++..+.++++|++|+|++|.++.. ... ...+++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 014567777888888888888887621 212 2235678888888874433 245566677888888888887
Q ss_pred cccCc-ccccc-cccCCCcCCCCcceEEEeccCCCC-----CCchhhhhcCccEEEEeCCCCCCC----C-CC-CCCCCc
Q 044700 638 LASMP-KEIER-LTRLSAQPPEYLMRLEIRDYRGST-----FPSWIDLLSRLTILSLKDWTNCEQ----L-AP-LGNLPS 704 (795)
Q Consensus 638 l~~lp-~~i~~-L~~L~l~~~~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~----l-~~-l~~l~~ 704 (795)
+.... ..+.. +. ...++|+.|++++|.... ++..+..+++|++|++++|.+... + +. ...+++
T Consensus 182 i~~~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 182 INEAGVRVLCQGLK----DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp CHHHHHHHHHHHHH----HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred cchHHHHHHHHHHh----cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 65321 11111 00 012244777777776554 355556667777777777765431 1 11 234666
Q ss_pred cCeeecccc
Q 044700 705 LESLSLFSM 713 (795)
Q Consensus 705 L~~L~L~~~ 713 (795)
|++|++++|
T Consensus 258 L~~L~L~~n 266 (461)
T 1z7x_W 258 LRTLWIWEC 266 (461)
T ss_dssp CCEEECTTS
T ss_pred ceEEECcCC
Confidence 666666665
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=5.2e-15 Score=144.97 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=84.8
Q ss_pred cccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccc-cCc
Q 044700 518 SEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAE-LPE 596 (795)
Q Consensus 518 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~ 596 (795)
..+++|++|++++|.. .. ++ .+.. +++|++|++++| .+ .. +..+.++++|++|++++|.++. .|.
T Consensus 41 ~~l~~L~~L~l~~n~i-----~~-l~-~l~~-l~~L~~L~l~~n-~~----~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-----TD-LT-GIEY-AHNIKDLTINNI-HA----TN-YNPISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCC-----SC-CT-TGGG-CTTCSEEEEESC-CC----SC-CGGGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCc-----cC-hH-HHhc-CCCCCEEEccCC-CC----Cc-chhhhcCCCCCEEEeECCccCcccCh
Confidence 4566677777766652 21 22 2444 666777777666 33 22 2356666677777777776663 456
Q ss_pred ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcc-cccCcccccccccCCCcCCCCcceEEEeccCCCCCCch
Q 044700 597 ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTS-LASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSW 675 (795)
Q Consensus 597 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~ 675 (795)
.++++++|++|++++|......|..+..+++|++|++++|. +..+| .+..+++| +.|++++|....++ .
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L--------~~L~l~~n~i~~~~-~ 176 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL--------KSLNIQFDGVHDYR-G 176 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC--------CEEECTTBCCCCCT-T
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC--------CEEECCCCCCcChH-H
Confidence 66666777777777664444456666666666666666665 55444 33333333 55555555544444 3
Q ss_pred hhhhcCccEEEEeCCC
Q 044700 676 IDLLSRLTILSLKDWT 691 (795)
Q Consensus 676 i~~l~~L~~L~L~~~~ 691 (795)
+..+++|++|++++|.
T Consensus 177 l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEEECBC-
T ss_pred hccCCCCCEEEeeCcc
Confidence 4445555555555544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=8.8e-15 Score=167.59 Aligned_cols=185 Identities=18% Similarity=0.192 Sum_probs=139.7
Q ss_pred cccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccccc
Q 044700 496 RRVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEI 575 (795)
Q Consensus 496 ~~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i 575 (795)
....++.|.+..+.+..++ .+..+++|+.|++++|.. ....+ +.. +++|+.|+|++| .+ ..+| .+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-----~~~~~--l~~-l~~L~~L~Ls~N-~l----~~l~-~l 105 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-----TDIKP--LTN-LKNLGWLFLDEN-KI----KDLS-SL 105 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-----CCCGG--GGG-CTTCCEEECCSS-CC----CCCT-TS
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-----CCChh--hcc-CCCCCEEECcCC-CC----CCCh-hh
Confidence 3456777888777777654 578899999999998863 33333 566 899999999998 45 4444 68
Q ss_pred CCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcC
Q 044700 576 GNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQP 655 (795)
Q Consensus 576 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~ 655 (795)
..+++|++|+|++|.+..+| .+..|++|+.|+|++| .+..+ ..+..+++|++|+|++|.+..+++ +..+++|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L---- 177 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL---- 177 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTC----
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCC----
Confidence 88999999999999988875 5888999999999988 45555 568889999999999998887765 6665555
Q ss_pred CCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCC-CCCCCCccCee
Q 044700 656 PEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLA-PLGNLPSLESL 708 (795)
Q Consensus 656 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 708 (795)
+.|++++|....+| .+..+++|+.|+|++|.+..... .+..+..+..|
T Consensus 178 ----~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 178 ----QNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226 (605)
T ss_dssp ----CEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred ----CEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence 89999999888774 57888999999999988765322 24444444433
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=1.1e-14 Score=164.97 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=93.8
Q ss_pred eeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCccccee
Q 044700 552 TLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHL 631 (795)
Q Consensus 552 ~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 631 (795)
+|+.|+|++| .+ ..+|..+. ++|++|+|++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|
T Consensus 60 ~L~~L~Ls~n-~L----~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRL-NL----SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSS-CC----SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCC-CC----CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEE
Confidence 5666666666 34 33554442 55666666666666666 34566666666665 3334555 443 66666
Q ss_pred ecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecc
Q 044700 632 LNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLF 711 (795)
Q Consensus 632 ~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 711 (795)
++++|.++.+|. .++ +|+.|++++|....+|. .+++|++|+|++|.+.. +|.++ ++|+.|+|+
T Consensus 126 ~Ls~N~l~~lp~---~l~--------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls 188 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPA--------LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVS 188 (571)
T ss_dssp ECCSSCCSCCCC---CCT--------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECC
T ss_pred ECCCCcCCCCCC---cCc--------cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cchhh--CCCCEEECc
Confidence 666666655554 222 33666666666555554 45566666666665554 33343 566666666
Q ss_pred cccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccccccccccceeeecCC
Q 044700 712 SMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMPCLCSLSFVYC 773 (795)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C 773 (795)
+|. ++.++. +.. ......+.|+.|++++| .+..++..... +++|+.|++++|
T Consensus 189 ~N~-L~~lp~-~~~------~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~L~~N 240 (571)
T 3cvr_A 189 TNL-LESLPA-VPV------RNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTIILEDN 240 (571)
T ss_dssp SSC-CSSCCC-CC--------------CCEEEECCSS-CCCCCCGGGGG-SCTTEEEECCSS
T ss_pred CCC-CCchhh-HHH------hhhcccccceEEecCCC-cceecCHHHhc-CCCCCEEEeeCC
Confidence 542 222221 100 00011122366666664 44455444444 666666666666
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=5.6e-15 Score=151.72 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=127.5
Q ss_pred ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCccc
Q 044700 519 EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEEL 598 (795)
Q Consensus 519 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i 598 (795)
.+.++..+.+.++. +.... .+.. +++|++|++++| .+ ..++ .++.+++|++|+|++|.++.+|. +
T Consensus 17 ~l~~l~~l~l~~~~-----i~~~~--~~~~-l~~L~~L~l~~n-~i----~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-----VTDLV--SQKE-LSGVQNFNGDNS-NI----QSLA-GMQFFTNLKELHLSHNQISDLSP-L 81 (263)
T ss_dssp HHHHHHHHHHTCSC-----TTSEE--CHHH-HTTCSEEECTTS-CC----CCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred HHHHHHHHHhcCCC-----ccccc--chhh-cCcCcEEECcCC-Cc----ccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence 45666667777665 22222 2455 788999999888 55 5555 67888899999999998888877 8
Q ss_pred CCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhh
Q 044700 599 CGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDL 678 (795)
Q Consensus 599 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~ 678 (795)
.++++|++|++++| .+..+|... . ++|++|++++|.+..+| .++.+++| +.|++++|....++ .+..
T Consensus 82 ~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L--------~~L~Ls~N~i~~~~-~l~~ 148 (263)
T 1xeu_A 82 KDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNL--------EILSIRNNKLKSIV-MLGF 148 (263)
T ss_dssp TTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTC--------CEEECTTSCCCBCG-GGGG
T ss_pred ccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCCccCCCh-hhcCcccc--------cEEECCCCcCCCCh-HHcc
Confidence 88899999999988 556666533 3 88999999999888775 45555555 88999888888775 6778
Q ss_pred hcCccEEEEeCCCCCCCCCCCCCCCccCeeeccccc
Q 044700 679 LSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMG 714 (795)
Q Consensus 679 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 714 (795)
+++|+.|+|++|.+... +.+..+++|+.|++++|.
T Consensus 149 l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 89999999999887665 668888999999998754
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.5e-14 Score=163.80 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=121.7
Q ss_pred ceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCC
Q 044700 499 KLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNL 578 (795)
Q Consensus 499 ~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l 578 (795)
+++.|.+..+.+..+|..+ +++|++|++++|.. . .+| .. +++|++|+|++| .+ ..+|. +++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-----~-~ip---~~-l~~L~~L~Ls~N-~l----~~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-----I-SLP---EL-PASLEYLDACDN-RL----STLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-----S-CCC---CC-CTTCCEEECCSS-CC----SCCCC-CCT-
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-----c-ccc---cc-cCCCCEEEccCC-CC----CCcch-hhc-
Confidence 5667777777777666655 36788888888763 2 223 22 677888888887 45 44666 554
Q ss_pred CCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCC
Q 044700 579 EFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEY 658 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~ 658 (795)
+|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.++.+|. ++ + +
T Consensus 121 -~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~--------~ 181 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--E--------S 181 (571)
T ss_dssp -TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--T--------T
T ss_pred -CCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCCcch-hh--C--------C
Confidence 78888888888887776 5778888888887 4555776 56788888888888777776 43 3 4
Q ss_pred cceEEEeccCCCCCCchhhhhcCc-------cEEEEeCCCCCCCCCCCCCCCccCeeecccccC
Q 044700 659 LMRLEIRDYRGSTFPSWIDLLSRL-------TILSLKDWTNCEQLAPLGNLPSLESLSLFSMGS 715 (795)
Q Consensus 659 L~~L~l~~~~~~~lp~~i~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 715 (795)
|+.|++++|....+|. +.. +| +.|+|++|.+....+.+..+++|+.|+|++|+.
T Consensus 182 L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 182 LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 4788888887777776 433 56 888888887765444466788888888877653
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=2.9e-16 Score=175.83 Aligned_cols=140 Identities=18% Similarity=0.123 Sum_probs=75.0
Q ss_pred ceeEEEEEeeCCCC-----CCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc
Q 044700 499 KLSHLFLRVSEGIS-----FPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA 573 (795)
Q Consensus 499 ~l~~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~ 573 (795)
++++|.+..+.+.. ++..+..+++|++|++++|......... +...+....++|++|+|++|.........++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 56777777666552 2555667777777777777531111111 11111111346777777777322110112344
Q ss_pred ccCCCCCCCeEEcCCCCcccc-CcccC-----CCCcCcEEeccCCCCCCc----cchhhccCcccceeecCCcccc
Q 044700 574 EIGNLEFLRYLNLSLLKIAEL-PEELC-----GLWNLQTLELNWCTNLET----LPQGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~~~l~ 639 (795)
.+..+++|++|++++|.+... +..+. .+++|++|++++|..... +|..+..+++|++|++++|.+.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 555667777777777766521 11221 245677777777643321 4555666677777777776554
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.1e-14 Score=140.63 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=88.7
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
+++|+.|++++| .+ ..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|+
T Consensus 43 l~~L~~L~l~~n-~i----~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANI-NV----TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESS-CC----SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCC-Cc----cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 455666666666 34 3444 4666666666666666555443 566666666666666644444555666666666
Q ss_pred eeecCCccccc-CcccccccccCCCcCCCCcceEEEeccC-CCCCCchhhhhcCccEEEEeCCCCCCCCCCCCCCCccCe
Q 044700 630 HLLNVGTSLAS-MPKEIERLTRLSAQPPEYLMRLEIRDYR-GSTFPSWIDLLSRLTILSLKDWTNCEQLAPLGNLPSLES 707 (795)
Q Consensus 630 ~L~l~~~~l~~-lp~~i~~L~~L~l~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 707 (795)
+|++++|.+.. .|..++.+++| +.|++++|. ...+| .+..+++|++|++++|.+.. ++.+..+++|+.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L--------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~ 185 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV--------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQ 185 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC--------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCE
T ss_pred EEEecCCccCcHhHHHHhhCCCC--------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCE
Confidence 66666666653 34445555444 666666665 55554 45666666666666666544 335666666666
Q ss_pred eecccc
Q 044700 708 LSLFSM 713 (795)
Q Consensus 708 L~L~~~ 713 (795)
|+++++
T Consensus 186 L~l~~N 191 (197)
T 4ezg_A 186 LYAFSQ 191 (197)
T ss_dssp EEECBC
T ss_pred EEeeCc
Confidence 666654
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.2e-15 Score=164.85 Aligned_cols=236 Identities=15% Similarity=0.103 Sum_probs=137.1
Q ss_pred ccceeEEEEEeeCCCCCC-----ccccccC-cceEEeeccCCCcccchhhhhhhHHhh----hCCeeeEEecCCCCcccc
Q 044700 497 RVKLSHLFLRVSEGISFP-----VSVSEVQ-NLRSLRIQYGSKTCSLISEVLPKLLDQ----SRTTLRALDLSGQSWYEN 566 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~-----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~ 566 (795)
+..+++|.+..+.+...+ ..+..++ +|++|++++|.. ....+..+.. .+++|++|+|++|. +.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-----~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~- 93 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-----GFKNSDELVQILAAIPANVTSLNLSGNF-LS- 93 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-----GGSCHHHHHHHHHTSCTTCCEEECCSSC-GG-
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC-----CHHHHHHHHHHHhccCCCccEEECcCCc-CC-
Confidence 445778888777766553 4566677 788888888763 2222323332 12778888888873 41
Q ss_pred ccccccc----ccCCC-CCCCeEEcCCCCccccCc-----ccCCC-CcCcEEeccCCCCCC----ccchhhccCc-ccce
Q 044700 567 MTIKIPA----EIGNL-EFLRYLNLSLLKIAELPE-----ELCGL-WNLQTLELNWCTNLE----TLPQGMGKLI-NLEH 630 (795)
Q Consensus 567 ~~~~lp~----~i~~l-~~L~~L~L~~~~l~~lp~-----~i~~L-~~L~~L~L~~~~~~~----~lp~~i~~l~-~L~~ 630 (795)
...+. .+..+ ++|++|+|++|.++..+. .+..+ .+|++|++++|.... .++..+..++ +|++
T Consensus 94 --~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 --YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp --GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred --hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 22222 23444 778888888888775442 23343 578888888874332 3444455555 7888
Q ss_pred eecCCcccccCc-cccccc-ccCCCcCCCCcceEEEeccCCCC-----CCchhhh-hcCccEEEEeCCCCCCCCC-----
Q 044700 631 LLNVGTSLASMP-KEIERL-TRLSAQPPEYLMRLEIRDYRGST-----FPSWIDL-LSRLTILSLKDWTNCEQLA----- 697 (795)
Q Consensus 631 L~l~~~~l~~lp-~~i~~L-~~L~l~~~~~L~~L~l~~~~~~~-----lp~~i~~-l~~L~~L~L~~~~~~~~l~----- 697 (795)
|++++|.+...+ ..+... ... +.+|+.|++++|.... ++..+.. .++|++|+|++|.+....+
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASI----PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred eeecCCCCchhhHHHHHHHHHhC----CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 888888776443 222211 100 1245888888887655 4444544 3478888888887665332
Q ss_pred CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc
Q 044700 698 PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 698 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
.+..+++|+.|++++|.. ..+...... .++..+..+++|+.|++++++
T Consensus 248 ~~~~l~~L~~L~L~~n~l-~~i~~~~~~---~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIV-KNMSKEQCK---ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHH-TTCCHHHHH---HHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCc-cccCHHHHH---HHHHHhccCCceEEEecCCCc
Confidence 256778888888877641 111111000 111233467777888887764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.3e-13 Score=138.45 Aligned_cols=144 Identities=26% Similarity=0.260 Sum_probs=81.7
Q ss_pred eEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccch-hhccCccccee
Q 044700 554 RALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHL 631 (795)
Q Consensus 554 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L 631 (795)
+.++.+++ .+ ..+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 22 ~~v~c~~~-~l----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 22 TTVDCRSK-RH----ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TEEECTTS-CC----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CEeEccCC-Cc----CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEE
Confidence 34555554 33 44454332 5566666666666654 4455566666666666653 344443 34566666666
Q ss_pred ecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeee
Q 044700 632 LNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLS 709 (795)
Q Consensus 632 ~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 709 (795)
++++|.++.+|.. +..+++| +.|++++|....+|..+..+++|++|+|++|.+....+. +..+++|+.|+
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L--------~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHL--------KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCcCCccChhHhCcchhh--------CeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 6666666555543 2334433 666666666666666666666666777766666544433 66666777776
Q ss_pred cccc
Q 044700 710 LFSM 713 (795)
Q Consensus 710 L~~~ 713 (795)
+++|
T Consensus 166 l~~N 169 (229)
T 3e6j_A 166 LFGN 169 (229)
T ss_dssp CTTS
T ss_pred eeCC
Confidence 6654
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.7e-15 Score=175.14 Aligned_cols=196 Identities=20% Similarity=0.159 Sum_probs=113.4
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
...++++.+..+.....+..+....+|+.+.+......+.. ....+..+.. ++.|++|+|++| .+ ..+|..+.
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~-l~~L~~L~Ls~n-~l----~~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYD-DQLWHALDLSNL-QI----FNISANIF 244 (727)
T ss_dssp ---------------------------------------------------C-CCCCCEEECTTS-CC----SCCCGGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc-eecChhhhcc-CCCCcEEECCCC-CC----CCCChhhc
Confidence 34577888877776665555555555555555443221111 2245666777 899999999999 56 67888888
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPP 656 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~ 656 (795)
++++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|..|++|++|++|+|++|.+..+|..++.|++|
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L----- 318 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL----- 318 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC-----
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc-----
Confidence 9999999999999999999999999999999999995 5688999999999999999999999999888888877
Q ss_pred CCcceEEEeccCCCCC-Cchhhhhc-CccEEEEeCCCCCCCCCCCCCCCccCeeecccc
Q 044700 657 EYLMRLEIRDYRGSTF-PSWIDLLS-RLTILSLKDWTNCEQLAPLGNLPSLESLSLFSM 713 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~l-p~~i~~l~-~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 713 (795)
+.|++++|..... |.++..+. .+..|+|++|.+...+| +.|+.|+++.+
T Consensus 319 ---~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 319 ---QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp ---CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred ---cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence 9999999987754 55554332 22346777777766554 24555555543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.2e-13 Score=136.39 Aligned_cols=125 Identities=26% Similarity=0.299 Sum_probs=61.6
Q ss_pred CCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcccceeecCCcccccCccc-ccccccCCCcCC
Q 044700 580 FLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPP 656 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~ 656 (795)
+|++|++++|.++.+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|.+..+|.. ++.+++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----- 102 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL----- 102 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-----
Confidence 45555555555554443 23455555555555542 223332 234555555555555555544432 2333333
Q ss_pred CCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecccc
Q 044700 657 EYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSM 713 (795)
Q Consensus 657 ~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 713 (795)
+.|++++|....+|.. +..+++|++|+|++|.+....+. +..+++|+.|++++|
T Consensus 103 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 103 ---KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ---CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ---CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 5555555554444432 34555666666666655543333 555666666666553
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.9e-16 Score=178.81 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=99.1
Q ss_pred cccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccc---------ccccccccccCCCCCCCeEE-cC
Q 044700 518 SEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYE---------NMTIKIPAEIGNLEFLRYLN-LS 587 (795)
Q Consensus 518 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---------~~~~~lp~~i~~l~~L~~L~-L~ 587 (795)
..+++|+.|++++|. + ..+|..+.. +++|+.|++++|..+. +.....|..++++++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~-----L-~~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-----S-TVLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH-----H-HHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh-----H-HhhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 456777777777764 2 345666666 7777777776552100 01133445556666666666 44
Q ss_pred CCCccccCc------ccCC--CCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCc
Q 044700 588 LLKIAELPE------ELCG--LWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYL 659 (795)
Q Consensus 588 ~~~l~~lp~------~i~~--L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L 659 (795)
.|.+..++. .+.. ...|+.|+|++| .+..+|. ++++++|++|++++|.++.+|..++.+++|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L-------- 488 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCL-------- 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTC--------
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCC--------
Confidence 443322221 0111 113666666665 3444554 666666666666666666666666555554
Q ss_pred ceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCC--CCCCCCCccCeeecccc
Q 044700 660 MRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQL--APLGNLPSLESLSLFSM 713 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~ 713 (795)
+.|++++|....+| .++.+++|+.|+|++|.+.... ..++.+++|+.|+|++|
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 66666666655555 5556666666666666655542 23566666666666553
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1e-13 Score=138.26 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=94.9
Q ss_pred eEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceee
Q 044700 554 RALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLL 632 (795)
Q Consensus 554 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 632 (795)
+.++++++ .+ ..+|..+. ++|++|+|++|.++.+|. .+.++++|++|+|++|......|..+.++++|++|+
T Consensus 14 ~~v~c~~~-~l----~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGK-GL----TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTS-CC----SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCC-Cc----CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 45666665 44 45555443 567777777777776654 566777777777777644444466677777777777
Q ss_pred cCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeee
Q 044700 633 NVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLS 709 (795)
Q Consensus 633 l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 709 (795)
+++|.+..+|.. +..+++| +.|++++|....+ |..+..+++|++|+|++|.+....+. +..+++|+.|+
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSL--------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCcCCccCHhHccCCCCC--------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 777777766654 2444444 6777777766655 44566777777788777777665554 77777777777
Q ss_pred ccccc
Q 044700 710 LFSMG 714 (795)
Q Consensus 710 L~~~~ 714 (795)
|++|+
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 77643
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.7e-16 Score=179.08 Aligned_cols=197 Identities=20% Similarity=0.198 Sum_probs=152.4
Q ss_pred ccceeEEEEEeeCCCCCCccccccCcceEEeeccCCCc--------ccchhhhhhhHHhhhCCeeeEEe-cCCCCccccc
Q 044700 497 RVKLSHLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKT--------CSLISEVLPKLLDQSRTTLRALD-LSGQSWYENM 567 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--------~~~~~~~~~~~~~~~~~~L~~L~-L~~~~~~~~~ 567 (795)
.+.+++|.+..+.+..+|..+..+++|+.|++.+|..- ........|..+.. +++|+.|+ ++.+ .+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n-~~--- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAA-YL--- 422 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHH-HH---
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhc-cc---
Confidence 34556677777777778999999999999998665310 00023445666777 88888888 5544 22
Q ss_pred cccccc------ccCC--CCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccc
Q 044700 568 TIKIPA------EIGN--LEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 568 ~~~lp~------~i~~--l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 639 (795)
..++. .+.. ...|++|+|++|.++.+|. ++++++|++|+|++| .+..+|..++++++|++|++++|.++
T Consensus 423 -~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 423 -DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCC
Confidence 11111 1111 1359999999999999997 999999999999999 56699999999999999999999999
Q ss_pred cCcccccccccCCCcCCCCcceEEEeccCCCCC--CchhhhhcCccEEEEeCCCCCCCCCCCC----CCCccCeeec
Q 044700 640 SMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTF--PSWIDLLSRLTILSLKDWTNCEQLAPLG----NLPSLESLSL 710 (795)
Q Consensus 640 ~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l--p~~i~~l~~L~~L~L~~~~~~~~l~~l~----~l~~L~~L~L 710 (795)
.+| .++.+++| +.|++++|....+ |..++.+++|+.|+|++|.+.+.++... .+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L--------~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRL--------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSC--------CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCC--------cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988 78888777 9999999999888 8999999999999999999887766533 3788888754
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.9e-14 Score=142.37 Aligned_cols=144 Identities=26% Similarity=0.303 Sum_probs=78.9
Q ss_pred CeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccccCcc-cCCCCcCcEEeccCCCCCCccch-hhccCcc
Q 044700 551 TTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAELPEE-LCGLWNLQTLELNWCTNLETLPQ-GMGKLIN 627 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~ 627 (795)
++|++|++++| .+ ..++ ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..+|. .+.++++
T Consensus 28 ~~l~~L~l~~n-~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETN-SL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSS-CC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCC-cc----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccC
Confidence 44555666655 33 2333 2345566666666666666555442 3556666666666553 333332 3455666
Q ss_pred cceeecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCCCCCCCcc
Q 044700 628 LEHLLNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAPLGNLPSL 705 (795)
Q Consensus 628 L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 705 (795)
|++|++++|.+..+|.. +..+++| +.|++++|....+|.. +..+++|++|++++|.+. +.+++|
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L--------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 167 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQL--------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 167 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTT
T ss_pred CCEEEcCCCcCcccCHhHhccCCcC--------CEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCH
Confidence 66666666665555443 3334433 6666666655555443 456677777777777433 345667
Q ss_pred Ceeeccccc
Q 044700 706 ESLSLFSMG 714 (795)
Q Consensus 706 ~~L~L~~~~ 714 (795)
+.|+++.+.
T Consensus 168 ~~L~~~~n~ 176 (208)
T 2o6s_A 168 RYLSEWINK 176 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776543
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=3.3e-15 Score=172.94 Aligned_cols=152 Identities=15% Similarity=0.099 Sum_probs=79.4
Q ss_pred CCeeeEEecCCCCccccccc-ccccccCCCCCCCeEEcCCCCcc-----ccCcccCCCCcCcEEeccCCCCCCccchhhc
Q 044700 550 RTTLRALDLSGQSWYENMTI-KIPAEIGNLEFLRYLNLSLLKIA-----ELPEELCGLWNLQTLELNWCTNLETLPQGMG 623 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~-~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 623 (795)
+++|++|+|++|. +..... .++..+.++++|++|++++|.++ .++..+.++++|++|++++| ....+|..+.
T Consensus 163 ~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred CCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 5555555555552 211000 02222334555555555555553 23333445555555555555 2334555555
Q ss_pred cCcccceeecCCcccc----cCcccccccccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCC-CCC
Q 044700 624 KLINLEHLLNVGTSLA----SMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQ-LAP 698 (795)
Q Consensus 624 ~l~~L~~L~l~~~~l~----~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-l~~ 698 (795)
++++|++|.++.+... ..+..++ .+++|+.|.++++....+|..+..+++|++|+|++|.+... +..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~--------~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLV--------FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCC--------CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhh--------ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 5555555555432111 1111222 23455778887776666777777888888888888874321 111
Q ss_pred -CCCCCccCeeecc
Q 044700 699 -LGNLPSLESLSLF 711 (795)
Q Consensus 699 -l~~l~~L~~L~L~ 711 (795)
+..+++|+.|+++
T Consensus 313 ~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 313 LIQKCPNLEVLETR 326 (592)
T ss_dssp HHTTCTTCCEEEEE
T ss_pred HHHhCcCCCEEecc
Confidence 4566666666664
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=136.37 Aligned_cols=144 Identities=21% Similarity=0.193 Sum_probs=74.0
Q ss_pred EEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc--ccCCCCcCcEEeccCCCCCCccchhhccCcccceee
Q 044700 555 ALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE--ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLL 632 (795)
Q Consensus 555 ~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 632 (795)
.++++++ .+ ..+|..+. ..+++|+|++|.++.++. .+.++++|++|+|++|......|..+.++++|++|+
T Consensus 15 ~l~~s~n-~l----~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQ-KL----NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSS-CC----SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCC-Cc----ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 4555555 33 34444332 234555555555554421 245555555555555532222223455555555555
Q ss_pred cCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeee
Q 044700 633 NVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLS 709 (795)
Q Consensus 633 l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 709 (795)
+++|.+..+|.. ++.+++| +.|++++|....+ |..+..+++|++|+|++|.+....|. +..+++|+.|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESL--------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSC--------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCccCccCHhHhcCCcCC--------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 555555554433 3333333 5555555554444 34455566666666666666555433 66666666666
Q ss_pred cccc
Q 044700 710 LFSM 713 (795)
Q Consensus 710 L~~~ 713 (795)
|++|
T Consensus 160 L~~N 163 (220)
T 2v70_A 160 LLAN 163 (220)
T ss_dssp CCSC
T ss_pred ecCc
Confidence 6654
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.6e-14 Score=155.97 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=157.9
Q ss_pred eeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCC-eeeEEecCCCCcccccccccccccCCC-----C
Q 044700 507 VSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRT-TLRALDLSGQSWYENMTIKIPAEIGNL-----E 579 (795)
Q Consensus 507 ~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~lp~~i~~l-----~ 579 (795)
.+.+... |..+...++|++|++++|...... ...+...+.. ++ +|++|+|++| .+. ...+..+..+ +
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~-~~~~L~~L~Ls~N-~l~---~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS-TVELIQAFAN-TPASVTSLNLSGN-SLG---FKNSDELVQILAAIPA 80 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSC-HHHHHHHHHT-CCTTCCEEECCSS-CGG---GSCHHHHHHHHHTSCT
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChHH-HHHHHHHHHh-CCCceeEEECcCC-CCC---HHHHHHHHHHHhccCC
Confidence 3344433 333444556999999998732111 1112256666 77 8999999999 442 3334445443 8
Q ss_pred CCCeEEcCCCCccccCc-c----cCCC-CcCcEEeccCCCCCCccchhh----cc-CcccceeecCCccccc-----Ccc
Q 044700 580 FLRYLNLSLLKIAELPE-E----LCGL-WNLQTLELNWCTNLETLPQGM----GK-LINLEHLLNVGTSLAS-----MPK 643 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~-~----i~~L-~~L~~L~L~~~~~~~~lp~~i----~~-l~~L~~L~l~~~~l~~-----lp~ 643 (795)
+|++|+|++|.++..+. . +..+ ++|++|++++|......+..+ .. .++|++|++++|.+.. ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999985443 2 5555 899999999996443333333 33 3699999999998873 233
Q ss_pred cccccccCCCcCCCCcceEEEeccCCCCCC-chhh----hh-cCccEEEEeCCCCCCC----CCC-CCC-CCccCeeecc
Q 044700 644 EIERLTRLSAQPPEYLMRLEIRDYRGSTFP-SWID----LL-SRLTILSLKDWTNCEQ----LAP-LGN-LPSLESLSLF 711 (795)
Q Consensus 644 ~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp-~~i~----~l-~~L~~L~L~~~~~~~~----l~~-l~~-l~~L~~L~L~ 711 (795)
.+..+. .+|+.|++++|.....+ ..+. .+ ++|++|+|++|.+... ++. +.. .++|+.|+|+
T Consensus 161 ~l~~~~-------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 161 ILAAIP-------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHTSC-------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHhcCC-------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 333322 25699999999876543 2333 44 5999999999987652 222 444 3599999999
Q ss_pred cccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc--c-----cccccccccccccccceeeecCCC
Q 044700 712 SMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME--E-----WGDWECEMANVMPCLCSLSFVYCP 774 (795)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~-----l~~~~~~~~~~~p~L~~L~l~~C~ 774 (795)
+|. +...+... +...+..+++|++|++++|. . +..+.... ..+++|+.|++++++
T Consensus 234 ~N~-l~~~~~~~------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~-~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 234 LNC-LHGPSLEN------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF-PNIQKIILVDKNGKE 295 (362)
T ss_dssp SSC-CCCCCHHH------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS-TTCCEEEEECTTSCB
T ss_pred CCC-CCcHHHHH------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh-ccCCceEEEecCCCc
Confidence 864 33322211 11223468899999999885 1 22222222 348889999999884
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=8.6e-12 Score=135.97 Aligned_cols=318 Identities=11% Similarity=0.093 Sum_probs=197.1
Q ss_pred CceeecchhHHHHHHHHhC----CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 220 (795)
+.++||+++++++..++.. .....+.+.|+|++|+||||||+.+++ ...... ...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 5899999999999998875 211234899999999999999999998 333321 256788888888889999999
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCChhhHHHHHHhhcCCC----CCcEEEEEcCChHH
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIEDNSTWESLLQTLQEGR----PGSKILVTTDDQSI 294 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v 294 (795)
+..++..... ......++...+...+. +++.+||||++...+......+...+.... .+..+|++|+....
T Consensus 95 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9988654321 23345566666665553 568999999997665556666666554321 46778888776643
Q ss_pred HH--------hhCC-cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHc---------CCCchHHHHHhhh
Q 044700 295 AD--------KIGS-TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQC---------HDLPLLIKIVGRT 356 (795)
Q Consensus 295 a~--------~~~~-~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c---------~G~PLai~~lg~~ 356 (795)
.. .+.. .+.+++++.++..+++...+...... ..-..+..+.|++.+ +|.|..+..+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 32 2233 28999999999999998876321100 011235677888888 7887544433321
Q ss_pred -cC-----C--C-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccC---CCcccChhHHHHHHH
Q 044700 357 -LH-----F--K-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFP---KDYLINKDELIRSWM 424 (795)
Q Consensus 357 -L~-----~--~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~li~~W~ 424 (795)
.. + . +.+....+..... ...+.-.+..|+.+.+.++..++.+. .+-.+....+...+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 11 1 1 4444444443211 12233445678888888877777654 221456666655544
Q ss_pred H----cCCCC-hhhhhhHHHHHHHHcccccccccc-cCCCCC--cEEeec--cCHHHHHHHHHHhh
Q 044700 425 A----QGYVH-KEAVGQMCFDQMVARSWFQKFEFE-EDDDDG--RILRCK--MPVQVHKFVRFLAQ 480 (795)
Q Consensus 425 a----~g~i~-~~~~~~~~~~~L~~~sll~~~~~~-~~~~~~--~~~~c~--mHdlv~d~~~~~~~ 480 (795)
. .|... .......++++|..++++...... .....+ ..+... .|+++..+...+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 320 IVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 3 23222 145567899999999999986320 001112 223222 45666666555443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.3e-13 Score=131.11 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=95.2
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
.+.|+.|++++| .+.. ..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n-~l~~--~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNC-KSND--GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSC-BCBT--TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCC-CCCh--hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 577899999988 4511 26777788889999999999988877 7788889999999998865555777777888999
Q ss_pred eeecCCcccccCc--ccccccccCCCcCCCCcceEEEeccCCCCCCc----hhhhhcCccEEEEeCCCC
Q 044700 630 HLLNVGTSLASMP--KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS----WIDLLSRLTILSLKDWTN 692 (795)
Q Consensus 630 ~L~l~~~~l~~lp--~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~L~~~~~ 692 (795)
+|++++|.+..+| ..++.+++| +.|++++|....+|. .+..+++|++|++++|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L--------~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECL--------KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCC--------CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCC--------CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999988887765 444444443 666666666555554 445566666666666554
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=2.4e-13 Score=139.44 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=128.2
Q ss_pred CCCCCccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCC
Q 044700 510 GISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLL 589 (795)
Q Consensus 510 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~ 589 (795)
+..++ .+..+++|+.|++++|.. .. ++ .+.. +++|+.|+|++| .+ ..++. ++++++|++|+|++|
T Consensus 31 i~~~~-~~~~l~~L~~L~l~~n~i-----~~-l~-~l~~-l~~L~~L~L~~N-~i----~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 31 VTDLV-SQKELSGVQNFNGDNSNI-----QS-LA-GMQF-FTNLKELHLSHN-QI----SDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp TTSEE-CHHHHTTCSEEECTTSCC-----CC-CT-TGGG-CTTCCEEECCSS-CC----CCCGG-GTTCSSCCEEECCSS
T ss_pred ccccc-chhhcCcCcEEECcCCCc-----cc-ch-HHhh-CCCCCEEECCCC-cc----CCChh-hccCCCCCEEECCCC
Confidence 33333 577899999999999863 22 23 3566 899999999999 56 55665 899999999999999
Q ss_pred CccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCC
Q 044700 590 KIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRG 669 (795)
Q Consensus 590 ~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~ 669 (795)
.++.+|.... ++|++|++++| .+..+| .+.++++|++|++++|.++.+| .++.+++| +.|++++|..
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L--------~~L~L~~N~i 162 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKL--------EVLDLHGNEI 162 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTC--------CEEECTTSCC
T ss_pred ccCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCC--------CEEECCCCcC
Confidence 9999886444 99999999998 566665 5899999999999999998886 56666655 9999999998
Q ss_pred CCCCchhhhhcCccEEEEeCCCCCCC
Q 044700 670 STFPSWIDLLSRLTILSLKDWTNCEQ 695 (795)
Q Consensus 670 ~~lp~~i~~l~~L~~L~L~~~~~~~~ 695 (795)
..+ ..+..+++|+.|++++|.+...
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch-HHhccCCCCCEEeCCCCcccCC
Confidence 877 6678999999999999987654
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=3.1e-12 Score=139.34 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=181.0
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc------CceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVMRY------FDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~ 217 (795)
+.++||+++++++..++... ....+.+.|+|++|+||||||+.+++. .... --..+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 68999999999999998542 225678999999999999999999983 3221 1246788888888999999
Q ss_pred HHHHHHhcCCcccCCCCCCChHHHHHHHHHhc--CCCeEEEEEeCCCCCChh--hHHHHHHhhcCC-----CCCcEEEEE
Q 044700 218 SSIAEALGASASAFSSQGQELEPYLRYIRKSI--ARNRFILVIDDVWIEDNS--TWESLLQTLQEG-----RPGSKILVT 288 (795)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivT 288 (795)
..++.+++..... ......++...+...+ .+++.+||||++...... ..+.+...+... ..+..+|.|
T Consensus 97 ~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPF---TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCS---SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999764331 3344566666666666 356899999999543211 223333322211 345677888
Q ss_pred cCChH--------HHHhhCC-cccCCCCChHhHHHHHHHHhhc-CCCchhhhhHHHHHHHHHHHcC---CCch-HHHHHh
Q 044700 289 TDDQS--------IADKIGS-TENIRRASDEASWSLFESAAFF-NRSQEVREHLEHIGRKIVQQCH---DLPL-LIKIVG 354 (795)
Q Consensus 289 tR~~~--------va~~~~~-~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~---G~PL-ai~~lg 354 (795)
|+... +...+.. .+.+++++.++..+++...+.. ....... .+..+.+++.++ |.|. ++..+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 87652 2233333 2899999999999999887532 0111111 234567777777 9994 333322
Q ss_pred hhc------C-CC-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhc-ccCCCcccChhHHHHHH--
Q 044700 355 RTL------H-FK-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCA-IFPKDYLINKDELIRSW-- 423 (795)
Q Consensus 355 ~~L------~-~~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i~~~~li~~W-- 423 (795)
.+. . .. +.+.+..++..... ..+.-++..|+.+.+..+..++ ++-....+....+.+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 221 1 22 77777777664321 1233456788888887776666 33222244444333332
Q ss_pred --HHcCCCC-hhhhhhHHHHHHHHccccccc
Q 044700 424 --MAQGYVH-KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 424 --~a~g~i~-~~~~~~~~~~~L~~~sll~~~ 451 (795)
-..|.-. .......++++|...+++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1223111 145677899999999999885
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.6e-13 Score=147.91 Aligned_cols=171 Identities=20% Similarity=0.187 Sum_probs=123.3
Q ss_pred EEEEEeeCCCCCCccccccCcceEEeeccCCCcccchhhhhhhHHh-hhCCeeeEEecCCCCcccccccccc-cccCCCC
Q 044700 502 HLFLRVSEGISFPVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLD-QSRTTLRALDLSGQSWYENMTIKIP-AEIGNLE 579 (795)
Q Consensus 502 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 579 (795)
.+.+..+.+..+|..+. +.++.|++++|. +....+..|. . +++|++|+|++| .+ ..++ ..|.+++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~-l~~L~~L~L~~N-~i----~~i~~~~~~~l~ 88 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTR-LTNLHSLLLSHN-HL----NFISSEAFVPVP 88 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSC-CTTCCEEECCSS-CC----CEECTTTTTTCT
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-----CCccChhhhhhc-ccccCEEECCCC-cC----CccChhhccCCC
Confidence 45555566666666543 457888888886 3444455555 5 788888998888 45 4444 5688888
Q ss_pred CCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccc----cccccCCCc
Q 044700 580 FLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEI----ERLTRLSAQ 654 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~l~ 654 (795)
+|++|+|++|.++.+|. .+.++++|++|+|++|......|..+.++++|++|++++|.+..+|..+ ..+++
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~---- 164 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK---- 164 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT----
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc----
Confidence 89999999888887765 5788888999999888554455677888888899998888888887664 33444
Q ss_pred CCCCcceEEEeccCCCCCCc-hhhhhcC--ccEEEEeCCCCC
Q 044700 655 PPEYLMRLEIRDYRGSTFPS-WIDLLSR--LTILSLKDWTNC 693 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~~lp~-~i~~l~~--L~~L~L~~~~~~ 693 (795)
|+.|++++|....+|. .+..+++ |+.|+|++|.+.
T Consensus 165 ----L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 ----LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 4888888888887774 4556665 477888888753
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=3.4e-12 Score=138.95 Aligned_cols=289 Identities=13% Similarity=0.051 Sum_probs=179.7
Q ss_pred CceeecchhHHHHHHHHhC--CCCCCcEEEEEcCCCChHHHHHHHHhcCcchh----cc--CceeEEEEeCCCC-CHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS--SSTEIPIISILGTEGTGKTTLATLAYNSYKVM----RY--FDIRIWVGASADS-DVLSV 216 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 216 (795)
..++||+++++++..++.. .....+.+.|+|++|+||||||+.+++...-. .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6899999999999988765 22256799999999999999999999842111 01 2356788887766 88899
Q ss_pred HHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhh-HHH-HHHhhcCCCCCcEEEEEcCChHH
Q 044700 217 ASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNST-WES-LLQTLQEGRPGSKILVTTDDQSI 294 (795)
Q Consensus 217 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~iivTtR~~~v 294 (795)
+..++.++...... ............+...+..++.+|||||++...... .+. +...+... .+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 100 LSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 99999988533221 123445666777788887766699999995422111 222 22222222 67889999986531
Q ss_pred --------HHhhCCcccCCCCChHhHHHHHHHHhhcC-CCchhhhhHHHHHHHHHHHcC---CCch-HHHHHhhhc--C-
Q 044700 295 --------ADKIGSTENIRRASDEASWSLFESAAFFN-RSQEVREHLEHIGRKIVQQCH---DLPL-LIKIVGRTL--H- 358 (795)
Q Consensus 295 --------a~~~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~---G~PL-ai~~lg~~L--~- 358 (795)
....+..+.+++++.++..++|...+... ...... .+..+.|++.++ |.|. |+..+-... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 12222248999999999999999875321 111111 344567777777 8886 333332221 1
Q ss_pred --CC-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCC-hhhh
Q 044700 359 --FK-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVH-KEAV 434 (795)
Q Consensus 359 --~~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~-~~~~ 434 (795)
.. +.+.+..+++.... ..+..+++.|+.+.+..+..++....+-.+. +.....--..|.-. ....
T Consensus 254 ~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp SSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCHHH
T ss_pred CCCccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCHHH
Confidence 23 78888887765321 1244566788888877776666511101111 11111111223111 1456
Q ss_pred hhHHHHHHHHccccccc
Q 044700 435 GQMCFDQMVARSWFQKF 451 (795)
Q Consensus 435 ~~~~~~~L~~~sll~~~ 451 (795)
...+++.|..++++...
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 67889999999999875
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=6e-13 Score=133.53 Aligned_cols=132 Identities=27% Similarity=0.295 Sum_probs=87.2
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCcc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLIN 627 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~ 627 (795)
.++|++|+|++|. +. ...|..+.++++|++|+|++|.++.+|. .+.++++|++|+|++|. +..+|. .+..+++
T Consensus 39 ~~~L~~L~Ls~n~-i~---~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-IT---KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSSC-CC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCCCEEEcCCCc-cC---ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchh
Confidence 3567777777763 31 3335556777777777777777776664 34677777777777763 444443 3567777
Q ss_pred cceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCC
Q 044700 628 LEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 628 L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~ 694 (795)
|++|++++|.+..+|..+..+++| +.|++++|....+|. .+..+++|+.|+|++|.+..
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERLTHL--------THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCeEeccCCcccccCcccccCCCC--------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777777777777777666666655 777777777666654 45677888888888886543
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=3.7e-13 Score=134.10 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=66.8
Q ss_pred CeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccchh-hccCcc
Q 044700 551 TTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQG-MGKLIN 627 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~ 627 (795)
+.|+.|+|++| .+ ..++ ..+.++++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. +..+++
T Consensus 32 ~~l~~L~l~~n-~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-TI----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-CC----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCC-cC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCC
Confidence 34555555555 23 2232 2455555555555555555544 445555555555555555 33344433 455555
Q ss_pred cceeecCCcccccCc-ccccccccCCCcCCCCcceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCC
Q 044700 628 LEHLLNVGTSLASMP-KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTN 692 (795)
Q Consensus 628 L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~ 692 (795)
|++|++++|.+..++ ..+..+++| +.|++++|....++. .+..+++|+.|+|++|.+
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNL--------NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCC--------CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555555555555443 223333333 555555555555543 345666777777777654
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=2.8e-13 Score=146.14 Aligned_cols=168 Identities=24% Similarity=0.237 Sum_probs=129.9
Q ss_pred eEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccccccccc-ccC-CCCCCCeEEcCCCCccccCc-ccCC
Q 044700 524 RSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPA-EIG-NLEFLRYLNLSLLKIAELPE-ELCG 600 (795)
Q Consensus 524 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~-~i~-~l~~L~~L~L~~~~l~~lp~-~i~~ 600 (795)
++++++++. +.. +|..+ .+.++.|+|++| .+ ..++. .+. ++++|++|+|++|.|+.++. .+.+
T Consensus 21 ~~l~c~~~~-----l~~-iP~~~---~~~l~~L~Ls~N-~l----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQ-----LPN-VPQSL---PSYTALLDLSHN-NL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSC-----CSS-CCSSC---CTTCSEEECCSS-CC----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCC-----cCc-cCccC---CCCCCEEECCCC-CC----CccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 567777765 222 33322 456899999999 55 45554 465 89999999999999998874 6999
Q ss_pred CCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccccCc-ccccccccCCCcCCCCcceEEEeccCCCCCCchh--
Q 044700 601 LWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLASMP-KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPSWI-- 676 (795)
Q Consensus 601 L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i-- 676 (795)
+++|++|+|++|. +..+| ..+..+++|++|++++|.+..++ ..+..+++| +.|++++|....+|..+
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--------~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL--------QKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------CEEECCSSCCCSCCGGGTC
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------CEEECCCCcCCeeCHHHhc
Confidence 9999999999995 55554 46899999999999999998774 456666665 99999999999998876
Q ss_pred --hhhcCccEEEEeCCCCCCCCCC-CCCCCc--cCeeeccccc
Q 044700 677 --DLLSRLTILSLKDWTNCEQLAP-LGNLPS--LESLSLFSMG 714 (795)
Q Consensus 677 --~~l~~L~~L~L~~~~~~~~l~~-l~~l~~--L~~L~L~~~~ 714 (795)
..+++|+.|+|++|.+....+. +..+++ |+.|+|++|+
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 5799999999999988754432 667776 4889998765
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=132.96 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=82.5
Q ss_pred CeeeEEecCCCCccccccccc-c-cccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcc
Q 044700 551 TTLRALDLSGQSWYENMTIKI-P-AEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLIN 627 (795)
Q Consensus 551 ~~L~~L~L~~~~~~~~~~~~l-p-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 627 (795)
+.+++|+|++| .+ ..+ | ..+.++++|++|+|++|.++.++. .+.++++|++|+|++|......|..+..+++
T Consensus 32 ~~~~~L~L~~N-~l----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN-EF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSS-CC----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCEEEcCCC-cC----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 34566777766 34 333 2 235667777777777777766654 5667777777777776443333444666777
Q ss_pred cceeecCCcccccC-cccccccccCCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCCC
Q 044700 628 LEHLLNVGTSLASM-PKEIERLTRLSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 628 L~~L~l~~~~l~~l-p~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~ 694 (795)
|++|++++|.+..+ |..+..+++| +.|++++|....+ |..+..+++|+.|+|++|.+..
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSV--------RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTC--------SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCEEECCCCcCCeECHhHcCCCccC--------CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77777777766655 3445555444 6777777766665 5566677788888888776543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=3e-13 Score=125.85 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=94.6
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLE 629 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 629 (795)
.++|+.|++++| .+.. ..+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNE--GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBT--TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCCh--hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 567889999988 4511 26777788889999999999988877 6788889999999998855555787777888999
Q ss_pred eeecCCcccccCc--ccccccccCCCcCCCCcceEEEeccCCCCCCc----hhhhhcCccEEEEe
Q 044700 630 HLLNVGTSLASMP--KEIERLTRLSAQPPEYLMRLEIRDYRGSTFPS----WIDLLSRLTILSLK 688 (795)
Q Consensus 630 ~L~l~~~~l~~lp--~~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~L~ 688 (795)
+|++++|.+..+| ..++.+++| +.|++++|....+|. .+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L--------~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENL--------KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTC--------CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCC--------CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999988887654 555555544 677777776665554 45566667666654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=5.1e-14 Score=165.48 Aligned_cols=136 Identities=22% Similarity=0.148 Sum_probs=110.2
Q ss_pred cccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccccccc
Q 044700 569 IKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERL 648 (795)
Q Consensus 569 ~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L 648 (795)
...|..+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|.+|++|++|+|++|.|+.+|..++.|
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34567788999999999999999999999999999999999999 55699999999999999999999999999999888
Q ss_pred ccCCCcCCCCcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCCCCCC-CCCCC-ccCeeecccc
Q 044700 649 TRLSAQPPEYLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLP-SLESLSLFSM 713 (795)
Q Consensus 649 ~~L~l~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~~ 713 (795)
++| +.|++++|....+|..++.+++|+.|+|++|.+.+.+|. +..+. .+..|+|++|
T Consensus 293 ~~L--------~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 293 FQL--------KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp TTC--------SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCC--------CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 877 999999999999999999999999999999998876654 33222 1223566653
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=3e-14 Score=164.89 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=125.8
Q ss_pred ccceeEEEEEeeCCCCC-Ccccc-ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccc-ccccc
Q 044700 497 RVKLSHLFLRVSEGISF-PVSVS-EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMT-IKIPA 573 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~lp~ 573 (795)
...+++|.+..+.+... +..+. .+++|++|++.+|.. .....++..+.. +++|++|+|++|. +.... ..++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~---~~~~~l~~~~~~-~~~L~~L~L~~~~-i~~~~~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG---FSTDGLAAIAAT-CRNLKELDLRESD-VDDVSGHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE---EEHHHHHHHHHH-CTTCCEEECTTCE-EECCCGGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC---CCHHHHHHHHHh-CCCCCEEeCcCCc-cCCcchHHHHH
Confidence 34678888888765543 33443 689999999998741 112234555556 9999999999994 42211 22444
Q ss_pred ccCCCCCCCeEEcCCCC--cc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcc-------cccCc
Q 044700 574 EIGNLEFLRYLNLSLLK--IA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTS-------LASMP 642 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-------l~~lp 642 (795)
....+++|++|++++|. +. .++..+.++++|++|++++|.....+|..+.++++|++|.+..+. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 45578899999999987 32 233334567999999999986666788888999999999966542 33344
Q ss_pred ccccccccCCCc----------------CCCCcceEEEeccCCCC--CCchhhhhcCccEEEEeCCCCCCCCCC-CCCCC
Q 044700 643 KEIERLTRLSAQ----------------PPEYLMRLEIRDYRGST--FPSWIDLLSRLTILSLKDWTNCEQLAP-LGNLP 703 (795)
Q Consensus 643 ~~i~~L~~L~l~----------------~~~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 703 (795)
..+.++++|... .+++|+.|+++++.... ++..+..+++|++|++++|.....++. ...++
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 444444444110 12445666665554221 111233555666666665511011111 12355
Q ss_pred ccCeeec
Q 044700 704 SLESLSL 710 (795)
Q Consensus 704 ~L~~L~L 710 (795)
+|+.|++
T Consensus 339 ~L~~L~L 345 (594)
T 2p1m_B 339 DLRELRV 345 (594)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 5666655
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=6e-13 Score=126.56 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=93.2
Q ss_pred CCCCCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc-CcccccccccCCC
Q 044700 577 NLEFLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS-MPKEIERLTRLSA 653 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~l 653 (795)
..++|++|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..++.+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-- 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-- 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence 4578889999999888 888888888899999998884 5555 667888888888888888776 55544455555
Q ss_pred cCCCCcceEEEeccCCCCCC--chhhhhcCccEEEEeCCCCCCCCC----CCCCCCccCeeeccccc
Q 044700 654 QPPEYLMRLEIRDYRGSTFP--SWIDLLSRLTILSLKDWTNCEQLA----PLGNLPSLESLSLFSMG 714 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....+| ..+..+++|++|++++|.+....+ .+..+|+|+.|++++|.
T Consensus 98 ------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 ------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77777777766665 456667777777777776665554 36667777777776654
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=1.1e-13 Score=159.92 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=53.2
Q ss_pred hhhcCccEEEEeCCCC--CC-CCCCC-CCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccc
Q 044700 677 DLLSRLTILSLKDWTN--CE-QLAPL-GNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWG 752 (795)
Q Consensus 677 ~~l~~L~~L~L~~~~~--~~-~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 752 (795)
..+++|++|+|++|.. .. .+..+ ..+++|+.|+|++|. ++.. .++..+..+++|++|++++|+ +.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~---------~~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDE---------GLMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHH---------HHHHHHTCCTTCCEEEEESCC-CB
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHH---------HHHHHHhcCcccCeeeccCCC-Cc
Confidence 3456666666654431 11 11111 235666666666543 1110 111223467889999998886 43
Q ss_pred cccc-cccccccccceeeecCCCCCcC-----CCCCCCcceec
Q 044700 753 DWEC-EMANVMPCLCSLSFVYCPELKA-----LPGIFLSQVIK 789 (795)
Q Consensus 753 ~~~~-~~~~~~p~L~~L~l~~C~~L~~-----lP~~L~~L~i~ 789 (795)
.... .....+|+|+.|++++|+ ++. +...++.|.+.
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEE
T ss_pred HHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEE
Confidence 3211 112238899999999985 654 33445555554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4.9e-13 Score=124.37 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=97.7
Q ss_pred CCCCCCeEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccccc-CcccccccccCCC
Q 044700 577 NLEFLRYLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLAS-MPKEIERLTRLSA 653 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~l 653 (795)
..++|++|++++|.++ .+|..+..+++|++|++++| .+..+ ..+.++++|++|++++|.+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-- 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-- 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC--
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC--
Confidence 4578999999999998 88988899999999999998 45555 678899999999999998887 66655556655
Q ss_pred cCCCCcceEEEeccCCCCCC--chhhhhcCccEEEEeCCCCCCCCC----CCCCCCccCeeecc
Q 044700 654 QPPEYLMRLEIRDYRGSTFP--SWIDLLSRLTILSLKDWTNCEQLA----PLGNLPSLESLSLF 711 (795)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~ 711 (795)
+.|++++|....+| ..+..+++|++|++++|.+....+ .++.+++|+.|+++
T Consensus 91 ------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 ------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888777654 667777888888888877665544 26667777777765
No 134
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.36 E-value=2.2e-12 Score=112.45 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhh--ccccCCccchhcccchHHHHHHHHHHHHhhchhhHHHhHhhhHhh
Q 044700 3 PPELIRSVQVFLLRLGIIEEMVEDGEES--RLNKTDSRTVIRGVMTSVKDWLDLVKVVATKSEDLVDELSTEFLR 75 (795)
Q Consensus 3 ~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~wl~~l~~~~y~~ed~ld~~~~~~~~ 75 (795)
..||.+++++|+++|++|++||.||+.+ +..+ +.++.|+++||++|||+|||||+|.++...
T Consensus 21 ~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d-----------~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESMNAALIKIGEVPREQLD-----------SQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3589999999999999999999999998 4455 999999999999999999999999998754
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.6e-12 Score=124.64 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCC-CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhh-ccCcc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLE-FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGM-GKLIN 627 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~l~~ 627 (795)
+.+|+.|++++| .+ ..+|. +..+. +|++|++++|.++.+ ..+.++++|++|++++| .+..+|..+ ..+++
T Consensus 18 ~~~L~~L~l~~n-~l----~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGY-KI----PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTS-CC----CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred cCCceEEEeeCC-CC----chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 445555555555 33 23332 22332 555666665555555 34555555666666555 333444332 55555
Q ss_pred cceeecCCcccccCcc--cccccccCCCcCCCCcceEEEeccCCCCCCch----hhhhcCccEEEEeCCC
Q 044700 628 LEHLLNVGTSLASMPK--EIERLTRLSAQPPEYLMRLEIRDYRGSTFPSW----IDLLSRLTILSLKDWT 691 (795)
Q Consensus 628 L~~L~l~~~~l~~lp~--~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~L~~~~ 691 (795)
|++|++++|.+..+|. .++.+++| +.|++++|....+|.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L--------~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSL--------TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTC--------CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCC--------CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666655555554443 33333322 4444444444444443 4455555555555553
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.2e-12 Score=125.46 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccCCCCCCCeEEcCCCCccccCcccCCCC-cCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccc-cccccC
Q 044700 574 EIGNLEFLRYLNLSLLKIAELPEELCGLW-NLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEI-ERLTRL 651 (795)
Q Consensus 574 ~i~~l~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L 651 (795)
.+.++.+|++|++++|.++.+|. +..+. +|++|++++| .+..+ ..+..+++|++|++++|.+..+|+.+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35678899999999999998865 44554 9999999998 45555 56888999999999999988887665 666655
Q ss_pred CCcCCCCcceEEEeccCCCCCCc--hhhhhcCccEEEEeCCCCCCCCCC----CCCCCccCeeeccccc
Q 044700 652 SAQPPEYLMRLEIRDYRGSTFPS--WIDLLSRLTILSLKDWTNCEQLAP----LGNLPSLESLSLFSMG 714 (795)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....+|. .+..+++|+.|++++|.+....+. ++.+|+|+.|+++++.
T Consensus 91 --------~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 --------TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --------CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --------CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888888877776 677888888888888877644332 6677777777777654
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=2.9e-11 Score=122.35 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=120.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++||+..++.+..++.... ...++.|+|++|+||||||+.+++. ....+... ...+... .. ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~-~~~~~~~---~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT-ATPCGVC---DN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC-SSCCSCS---HH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC-CCCCccc---HH-HHHHhccCC
Confidence 579999999999999998753 3468999999999999999999873 22221100 0000000 00 000000000
Q ss_pred CCcccCCC-CCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH-HHh-h
Q 044700 226 ASASAFSS-QGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI-ADK-I 298 (795)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~-~ 298 (795)
........ .....+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+.... ... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 00000000 001112222222221 2356799999999776667788888888766678888888876542 111 1
Q ss_pred CC-c-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhh
Q 044700 299 GS-T-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGR 355 (795)
Q Consensus 299 ~~-~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~ 355 (795)
.. . +++++++.++..+++...+...+... ..+..+.|++.|+|.|..+..+..
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 2 89999999999999998775432211 134577899999999998877664
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.30 E-value=5.6e-13 Score=154.19 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=23.4
Q ss_pred CCCCcceeeecCCccccccccc-ccccccccceeeecCCCC
Q 044700 736 YFPRLKSLKFVNMEEWGDWECE-MANVMPCLCSLSFVYCPE 775 (795)
Q Consensus 736 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~p~L~~L~l~~C~~ 775 (795)
.+++|++|++++|+. ...... ....+|+|+.|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 467777777777754 322221 222367777777777753
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=6.6e-12 Score=122.13 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=79.0
Q ss_pred eEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcc--cCCCCcCcEEeccCCCCCCccchhhccCccccee
Q 044700 554 RALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEE--LCGLWNLQTLELNWCTNLETLPQGMGKLINLEHL 631 (795)
Q Consensus 554 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 631 (795)
++++++++ .+ ..+|..+.. +|++|++++|.++.+|.. +.++++|++|+|++|......|..+.++++|++|
T Consensus 11 ~~l~~s~~-~l----~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GL----KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTS-CC----SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCC-Cc----CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 56777776 45 556655533 677777777777766653 6777777777777775444456667777777777
Q ss_pred ecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCC-CchhhhhcCccEEEEeCCCCC
Q 044700 632 LNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTF-PSWIDLLSRLTILSLKDWTNC 693 (795)
Q Consensus 632 ~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~ 693 (795)
++++|.+..++.. ++.+++| +.|++++|....+ |..+..+++|++|+|++|.+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQL--------KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTC--------CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCC--------CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7777777655443 3444433 5666666655443 444555666666666666544
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=120.21 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=70.5
Q ss_pred eEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeec
Q 044700 554 RALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLN 633 (795)
Q Consensus 554 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 633 (795)
++++++++ .+ ..+|..+. ++|++|+|++|.++.+|..+.++++|++|+|++|......|..|.++++|++|++
T Consensus 13 ~~l~~~~~-~l----~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNK-GL----KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTS-CC----SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CC----CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 45666666 44 45555442 4677777777777777766777777777777776433333345667777777777
Q ss_pred CCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCch-hhhhcCccEEEEeCCC
Q 044700 634 VGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWT 691 (795)
Q Consensus 634 ~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 691 (795)
++|.+..+|.. +..+++| +.|++++|....+|.. +..+++|+.|+|++|.
T Consensus 86 s~N~l~~i~~~~f~~l~~L--------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSL--------RLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTC--------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhCCCCCC--------CEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 77766655432 3333333 5555555554444432 3345555555555554
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=2.6e-14 Score=140.15 Aligned_cols=111 Identities=23% Similarity=0.234 Sum_probs=68.0
Q ss_pred cccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccccccccCC
Q 044700 573 AEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEIERLTRLS 652 (795)
Q Consensus 573 ~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 652 (795)
..++++++|++|+|++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++|.+..+| .++.+++|
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L- 117 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL- 117 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS-
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC-
Confidence 35666667777777777666666 6666667777777666 34466666666666677766666666554 45555544
Q ss_pred CcCCCCcceEEEeccCCCCCCc--hhhhhcCccEEEEeCCCCCC
Q 044700 653 AQPPEYLMRLEIRDYRGSTFPS--WIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 653 l~~~~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~L~~~~~~~ 694 (795)
+.|++++|....+|. .+..+++|++|++++|.+..
T Consensus 118 -------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 118 -------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 566666665554433 44556666666666665443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.8e-11 Score=119.01 Aligned_cols=122 Identities=21% Similarity=0.219 Sum_probs=100.5
Q ss_pred CeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccch--hhccCcccceeecCCcccccC-cccccccccCCCcCCCC
Q 044700 582 RYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQ--GMGKLINLEHLLNVGTSLASM-PKEIERLTRLSAQPPEY 658 (795)
Q Consensus 582 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~l~~~~~ 658 (795)
++++++++.++.+|..+.. +|++|++++| .+..+|. .+.++++|++|++++|.++.+ |..++.+++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------- 80 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence 7899999999999987754 9999999998 4566654 389999999999999999877 5566666665
Q ss_pred cceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeeccccc
Q 044700 659 LMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMG 714 (795)
Q Consensus 659 L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....++. .+..+++|++|+|++|.+....|. +..+++|++|+|++|+
T Consensus 81 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 81 -QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 899999998877654 477889999999999988876554 8888999999998754
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=3.7e-11 Score=116.80 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=102.3
Q ss_pred CeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc-ccccccCCCcCCCCcc
Q 044700 582 RYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPPEYLM 660 (795)
Q Consensus 582 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~ 660 (795)
++++++++.++.+|..+. ++|++|++++| .+..+|..+.++++|++|++++|.++.++.. +..+++| +
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L--------~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL--------L 81 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--------C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--------C
Confidence 689999999999998764 68999999998 5678999999999999999999999988753 6666655 8
Q ss_pred eEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeeccccc
Q 044700 661 RLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMG 714 (795)
Q Consensus 661 ~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 714 (795)
.|++++|....++. .+..+++|++|+|++|.+....+. +..+++|+.|++++|+
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99999998887765 577889999999999988765554 7888899999988754
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=3.1e-11 Score=131.27 Aligned_cols=289 Identities=11% Similarity=0.095 Sum_probs=175.1
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC---ceeEEEEeCCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVMRYF---DIRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i 220 (795)
..++||+++++.+.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|+++....+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 68999999999999998752 22567899999999999999999998 443333 256788877767778888888
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcC--CCeEEEEEeCCCCCC----hhhHHHHHHhhcC-CCCCcEEEEEcCChH
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIA--RNRFILVIDDVWIED----NSTWESLLQTLQE-GRPGSKILVTTDDQS 293 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 293 (795)
+.+++..... ......+....+...+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...
T Consensus 98 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 98 LESLDVKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTTTSCCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8877543321 22345555666666554 458999999984421 2344445444432 234566777887654
Q ss_pred HH--------HhhCCc-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcC---CCchHHHH-Hhhhc---
Q 044700 294 IA--------DKIGST-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCH---DLPLLIKI-VGRTL--- 357 (795)
Q Consensus 294 va--------~~~~~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~---G~PLai~~-lg~~L--- 357 (795)
.. ..+... +.+++++.++..+++...+...... ..-..+..+.+++.++ |.|..+.. +....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 32 222222 8999999999999998865311100 0111345566677776 99974433 32221
Q ss_pred --CC--C-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccCC-C-cccChhHHHHHHH----Hc
Q 044700 358 --HF--K-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPK-D-YLINKDELIRSWM----AQ 426 (795)
Q Consensus 358 --~~--~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~li~~W~----a~ 426 (795)
.+ . +.+.+..++..... ..+.-++..+|.+.+..+..++.+.+ + ..+....+.+... ..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIER----------DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 2 66666666654221 12344566788887777766664322 1 1233333322211 12
Q ss_pred CCCC-hhhhhhHHHHHHHHccccccc
Q 044700 427 GYVH-KEAVGQMCFDQMVARSWFQKF 451 (795)
Q Consensus 427 g~i~-~~~~~~~~~~~L~~~sll~~~ 451 (795)
|.-. .......+++.|...+++...
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2111 134567789999999999875
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.22 E-value=2.3e-10 Score=113.96 Aligned_cols=181 Identities=16% Similarity=0.071 Sum_probs=118.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-Cc-eeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-FD-IRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
..++|++..++++.+++... ....+.|+|.+|+|||++|+.+++. .... +. ..+.++.+.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHHH
Confidence 57999999999999999876 3344899999999999999999973 3222 22 23444444433333322222211
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH-HHhh-CC-
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI-ADKI-GS- 300 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~-~~- 300 (795)
..... ...+++.+||+||+.......++.+...+.....+.++|+||+.... .... ..
T Consensus 93 ~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 93 ARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 11100 01357889999999776656677777777666677888888876532 1111 11
Q ss_pred -cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 301 -TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 301 -~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.+++.+++.++..+++.+.+...+.. --.+..+.|++.++|.|..+..+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 28999999999999998876432211 11345677889999999865443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=3.7e-13 Score=131.83 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=98.7
Q ss_pred hhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchh
Q 044700 542 LPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQG 621 (795)
Q Consensus 542 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 621 (795)
++..+.. +++|++|+|++| .+ ..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .
T Consensus 40 l~~~~~~-l~~L~~L~ls~n-~l----~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~ 110 (198)
T 1ds9_A 40 MDATLST-LKACKHLALSTN-NI----EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G 110 (198)
T ss_dssp CHHHHHH-TTTCSEEECSEE-EE----SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred hhHHHhc-CCCCCEEECCCC-CC----cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c
Confidence 3446777 899999999988 55 5566 788889999999999999988888878889999999988 556676 6
Q ss_pred hccCcccceeecCCcccccCcc--cccccccCCCcCCCCcceEEEeccCCCCCCc-----------hhhhhcCccEEE
Q 044700 622 MGKLINLEHLLNVGTSLASMPK--EIERLTRLSAQPPEYLMRLEIRDYRGSTFPS-----------WIDLLSRLTILS 686 (795)
Q Consensus 622 i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~-----------~i~~l~~L~~L~ 686 (795)
+.++++|++|++++|.+..+|. .+..+++| +.|++++|.....++ .+..+++|+.|+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L--------~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKL--------EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTC--------SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCC--------CEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8888999999999998887664 45565555 889998886543321 255677777776
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=1.5e-10 Score=110.88 Aligned_cols=124 Identities=24% Similarity=0.290 Sum_probs=66.4
Q ss_pred eEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccch-hhccCccccee
Q 044700 554 RALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQ-GMGKLINLEHL 631 (795)
Q Consensus 554 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L 631 (795)
+.++++++ .+ ..+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|. +..+|. .+..+++|++|
T Consensus 10 ~~l~~~~~-~l----~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSK-GL----TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSS-CC----SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCC-CC----ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEE
Confidence 45555555 34 3444333 2466666666666665554 34566666666666663 333333 34566666666
Q ss_pred ecCCcccccCccc-ccccccCCCcCCCCcceEEEeccCCCCCCchh-hhhcCccEEEEeCCCCC
Q 044700 632 LNVGTSLASMPKE-IERLTRLSAQPPEYLMRLEIRDYRGSTFPSWI-DLLSRLTILSLKDWTNC 693 (795)
Q Consensus 632 ~l~~~~l~~lp~~-i~~L~~L~l~~~~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~~~ 693 (795)
++++|.++.+|.. ++.+++| +.|++++|....+|..+ ..+++|++|+|++|.+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L--------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQL--------KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTC--------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCccc--------CEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666666555443 2333333 55555555555454432 44556666666665443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=3e-10 Score=108.75 Aligned_cols=124 Identities=22% Similarity=0.256 Sum_probs=98.6
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccccCccc-ccccccCCCcCCC
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQPPE 657 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~~~~ 657 (795)
..+.++++++.++.+|..+. ++|++|++++|. +..+| ..+.++++|++|++++|.+..+|.. ++.+++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 35789999999999996654 799999999985 44555 4578999999999999999888765 4555555
Q ss_pred CcceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeeccccc
Q 044700 658 YLMRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLFSMG 714 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 714 (795)
+.|++++|....+|.. +..+++|++|+|++|.+....+. +..+++|+.|++++|+
T Consensus 79 --~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 --TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp --CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 8899999888877664 56888999999999887765554 6778889998888754
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.8e-10 Score=122.32 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=116.1
Q ss_pred CCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCccc----ccCc-ccccccccC
Q 044700 578 LEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSL----ASMP-KEIERLTRL 651 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l----~~lp-~~i~~L~~L 651 (795)
+++|+.|+|.. .++.++. .|.++++|+.|++.+|.....-+..|..+.++.++....+.. ..+. ..+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888888 7777765 677888888888887744333344566666676666554211 1111 011111221
Q ss_pred C------------------CcCCCCcceEEEeccCCCCCCchh-hhhcCccEEEEeCCCCCCCCCC-CCCCCccCeeecc
Q 044700 652 S------------------AQPPEYLMRLEIRDYRGSTFPSWI-DLLSRLTILSLKDWTNCEQLAP-LGNLPSLESLSLF 711 (795)
Q Consensus 652 ~------------------l~~~~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 711 (795)
. -..+.++..+.+.+.....-...+ ..+++|+.|+|++|.+....+. |.+|++|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 1 011233455555544221111111 1478899999998876554443 8899999999998
Q ss_pred cccCceeeCccccCCCCCCCccCCCCCCcc-eeeecCCcccccccccccccccccceeeecCCCCCcCCCC
Q 044700 712 SMGSVRKVGNEFLGIKSGIASSVTYFPRLK-SLKFVNMEEWGDWECEMANVMPCLCSLSFVYCPELKALPG 781 (795)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP~ 781 (795)
++ ++.++... +.++++|+ .|.+.+ .+..+....+..+++|+.|++.++ +++.++.
T Consensus 259 ~n--i~~I~~~a----------F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~ 314 (329)
T 3sb4_A 259 HN--LKTIGQRV----------FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD 314 (329)
T ss_dssp TT--CCEECTTT----------TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred cc--cceehHHH----------hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch
Confidence 74 66665443 33688888 888877 566666666667889999998776 6777764
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.9e-09 Score=113.96 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=117.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-C-ceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-F-DIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
.+++|++..++.+.+++... ....+.|+|++|+||||+|+.+++. .... + ...++++.+....... .+++++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 57999999999999999876 3334899999999999999999983 3221 2 1244454443323222 2222222
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhCC-
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSI-ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIGS- 300 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~- 300 (795)
+.... ..+ .+++.++|+||++......++.+...+.....++++|+||+... +......
T Consensus 96 ~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 96 FAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22100 011 35688999999977665667777777665566788888886643 2111111
Q ss_pred --cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHHh
Q 044700 301 --TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIVG 354 (795)
Q Consensus 301 --~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~lg 354 (795)
.+++.+++.++..+++...+...+.. --.+....|++.++|.|. |+..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 28999999999999998876432211 113456789999999995 444443
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=9.7e-10 Score=104.73 Aligned_cols=63 Identities=33% Similarity=0.357 Sum_probs=28.9
Q ss_pred CCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccccCc
Q 044700 579 EFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLASMP 642 (795)
Q Consensus 579 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp 642 (795)
++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. +.++++|++|++++|.+..+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeC
Confidence 4455555555555444 234444555555555544 23333332 344445555555544444443
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.2e-09 Score=104.03 Aligned_cols=104 Identities=24% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccc-cccccCCCcCCCCc
Q 044700 581 LRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEI-ERLTRLSAQPPEYL 659 (795)
Q Consensus 581 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~l~~~~~L 659 (795)
-+.+++++|.++.+|..+. .+|++|+|++|......|..+.++++|++|++++|.+..+|..+ ..+++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------- 83 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL-------- 83 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh--------
Confidence 4789999999999998775 89999999999655555778999999999999999999888753 555555
Q ss_pred ceEEEeccCCCCCCch-hhhhcCccEEEEeCCCCCC
Q 044700 660 MRLEIRDYRGSTFPSW-IDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 660 ~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~ 694 (795)
+.|++++|....+|.. +..+++|++|+|++|.+..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8888888887777764 6678888888888876543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.7e-09 Score=102.71 Aligned_cols=83 Identities=30% Similarity=0.376 Sum_probs=46.2
Q ss_pred eeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcccc-CcccCCCCcCcEEeccCCCCCCccchh-hccCcccce
Q 044700 553 LRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAEL-PEELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEH 630 (795)
Q Consensus 553 L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~ 630 (795)
.+.|+++++ .+ ..+|..+. ++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++
T Consensus 11 ~~~l~~s~n-~l----~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGK-SL----ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTS-CC----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCC-Cc----CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCE
Confidence 345666665 34 44554442 5566666666666655 3455666666666666653 3334333 456666666
Q ss_pred eecCCcccccCcc
Q 044700 631 LLNVGTSLASMPK 643 (795)
Q Consensus 631 L~l~~~~l~~lp~ 643 (795)
|++++|.+..+|.
T Consensus 83 L~L~~N~l~~~~~ 95 (170)
T 3g39_A 83 LSLNDNQLKSIPR 95 (170)
T ss_dssp EECCSSCCCCCCT
T ss_pred EECCCCccCEeCH
Confidence 6666666555544
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=6.3e-09 Score=110.11 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=144.8
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
.+++|++..+.++..++... ......|.|+|++|+|||++|+.+++ .... ..++++++......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~-------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPG-------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHH--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChH--------
Confidence 58999999999988887631 11346788999999999999999988 3322 22344433322221
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC------------------CCcE
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR------------------PGSK 284 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ 284 (795)
++...+...+ .+..+|++|++..........+...+.... .+.+
T Consensus 79 -----------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 79 -----------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -----------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -----------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1222221111 245689999997665555555555544321 2345
Q ss_pred EEEEcCChH-H----HHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhcC-
Q 044700 285 ILVTTDDQS-I----ADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTLH- 358 (795)
Q Consensus 285 iivTtR~~~-v----a~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L~- 358 (795)
+|.||.... + ...+...+.+.+++.++..+++.+.+...+.. --.+....+++.++|.|..+..+...+.
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 666665332 1 12222238899999999999988876432211 1135677889999999987766654321
Q ss_pred -----C--C-CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcc-cCCC----------cccChhHH
Q 044700 359 -----F--K-TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAI-FPKD----------YLINKDEL 419 (795)
Q Consensus 359 -----~--~-~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~-fp~~----------~~i~~~~l 419 (795)
. . +......++... ..++..++...+..+..+.. |..+ ..+++..+
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl 281 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTL 281 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHH
Confidence 1 1 455555554431 12234566655555554432 2222 11333333
Q ss_pred HH----HHHHcCCCCh-------hhhhhHHHH-HHHHcccccc
Q 044700 420 IR----SWMAQGYVHK-------EAVGQMCFD-QMVARSWFQK 450 (795)
Q Consensus 420 i~----~W~a~g~i~~-------~~~~~~~~~-~L~~~sll~~ 450 (795)
.+ +-+..|++.. .+.|..||+ ++.+|+|||+
T Consensus 282 ~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 282 EEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 32 3456677751 677888887 8888888875
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.9e-09 Score=102.36 Aligned_cols=105 Identities=22% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCcccc-cccccCCCcCCCC
Q 044700 580 FLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKEI-ERLTRLSAQPPEY 658 (795)
Q Consensus 580 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~l~~~~~ 658 (795)
..+.+++++|.++.+|..+. .+|++|+|++|......|..+.++++|++|++++|.+..+|... ..+++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L------- 80 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL------- 80 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC-------
Confidence 35789999999999998774 89999999999555555777999999999999999998887653 555555
Q ss_pred cceEEEeccCCCCCCc-hhhhhcCccEEEEeCCCCCC
Q 044700 659 LMRLEIRDYRGSTFPS-WIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 659 L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~ 694 (795)
+.|++++|....+|. .+..+++|++|+|++|.+..
T Consensus 81 -~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 81 -TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp -CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred -CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 788888887777765 36677788888888776543
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.9e-08 Score=107.71 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=156.9
Q ss_pred ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccc
Q 044700 515 VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAE 593 (795)
Q Consensus 515 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~ 593 (795)
..|.++ +|+.+.+.++ +..+....|.. + .|+.+.|..+ + ..++ ..|.++.+|+.++++.|.++.
T Consensus 130 ~aF~~~-~L~~i~l~~~------i~~I~~~aF~~-~-~L~~i~lp~~--l----~~I~~~aF~~c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG------LKSIGDMAFFN-S-TVQEIVFPST--L----EQLKEDIFYYCYNLKKADLSKTKITK 194 (401)
T ss_dssp TTTTTC-CCSEEECCTT------CCEECTTTTTT-C-CCCEEECCTT--C----CEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred hhcccC-CccEEEeCCC------ccEECHHhcCC-C-CceEEEeCCC--c----cEehHHHhhCcccCCeeecCCCcceE
Confidence 345554 6888888765 34445556666 4 6899998863 3 3444 568899999999999999999
Q ss_pred cCcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCC
Q 044700 594 LPEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTF 672 (795)
Q Consensus 594 lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l 672 (795)
+|.......+|+.+.+..+ +..++ ..|.++++|+.+.+..+ +..++.....-. +|+.+.+.++ ...+
T Consensus 195 I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~--------~L~~i~lp~~-i~~I 262 (401)
T 4fdw_A 195 LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRES--------GITTVKLPNG-VTNI 262 (401)
T ss_dssp ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTC--------CCSEEEEETT-CCEE
T ss_pred echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccC--------CccEEEeCCC-ccEE
Confidence 9886666789999999854 55554 45888999999998764 555543321112 4588888543 3445
Q ss_pred -CchhhhhcCccEEEEeCCCCCC----CCC--CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeee
Q 044700 673 -PSWIDLLSRLTILSLKDWTNCE----QLA--PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKF 745 (795)
Q Consensus 673 -p~~i~~l~~L~~L~L~~~~~~~----~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 745 (795)
...+..+++|+.+.+.++.... .++ .|.+|++|+.+.|.+ .++.++... +.++++|+.+.+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a----------F~~c~~L~~l~l 330 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL----------LGGNRKVTQLTI 330 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT----------TTTCCSCCEEEE
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh----------hcCCCCccEEEE
Confidence 3456789999999999886541 233 388999999999974 466665443 336889999999
Q ss_pred cCCcccccccccccccccccceeeecCCCCCcCCC
Q 044700 746 VNMEEWGDWECEMANVMPCLCSLSFVYCPELKALP 780 (795)
Q Consensus 746 ~~~~~l~~~~~~~~~~~p~L~~L~l~~C~~L~~lP 780 (795)
.+ ++..+....+..+ +|+.|.+.++ .+..++
T Consensus 331 p~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 331 PA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp CT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred Cc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccc
Confidence 65 4666666666667 9999999887 444443
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=9.7e-09 Score=108.73 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=116.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC--ceeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF--DIRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++. ..... ...+.++.+...... ..+..+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIREKVKE 99 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHHHHHH
Confidence 57999999999999999876 4456999999999999999999983 22211 123333333211111 11111111
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH-HHhh---C
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI-ADKI---G 299 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~---~ 299 (795)
+.... ....+++.++|+||++......++.+...+.....+.++|+||....- .... .
T Consensus 100 ~~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 100 FARTK------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHSC------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHhhC------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11000 011256889999999776666777787777766677888888876532 1111 1
Q ss_pred CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 300 STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 300 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
..+++.+++.++...++...+...+... -.+..+.|++.++|.|..+..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 1289999999999999988764332211 13456788889999998654443
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=9.9e-09 Score=108.82 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=125.7
Q ss_pred CCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCC---CCCcc-chhhc
Q 044700 550 RTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCT---NLETL-PQGMG 623 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~---~~~~l-p~~i~ 623 (795)
+++|+.|+|..+ + ..++ ..|.++++|+.|++++|.+..++. .+..+.++..+.+.... ....+ +..+.
T Consensus 100 ~~~L~~l~L~~~--i----~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSEK--I----KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp CTTCCC-CBCTT--C----CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cCCCcEEECCcc--c----cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 788999999873 4 4454 458899999999999999887755 67777777777665421 01111 12244
Q ss_pred cCcccc-eeecCCcccccCcccc-------cccccCCC-------------cCCCCcceEEEeccCCCCCCch-hhhhcC
Q 044700 624 KLINLE-HLLNVGTSLASMPKEI-------ERLTRLSA-------------QPPEYLMRLEIRDYRGSTFPSW-IDLLSR 681 (795)
Q Consensus 624 ~l~~L~-~L~l~~~~l~~lp~~i-------~~L~~L~l-------------~~~~~L~~L~l~~~~~~~lp~~-i~~l~~ 681 (795)
++.+|+ .+.+.... .++..+ .++..+.+ ..+++|+.+++.++....+|.. +..+++
T Consensus 174 ~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp ESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 444554 23322110 011000 00000000 0135669999999888888764 568999
Q ss_pred ccEEEEeCCCCCCCCCC--CCCCCccC-eeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccc
Q 044700 682 LTILSLKDWTNCEQLAP--LGNLPSLE-SLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEM 758 (795)
Q Consensus 682 L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 758 (795)
|+.|+|.+| ...++. |.+|++|+ .|.+.+ .++.++... +.++++|+.|.+.++ .+..+....
T Consensus 252 L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a----------F~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 252 LLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA----------FMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT----------TTTCTTEEEEEECSS-CCCEECTTT
T ss_pred CCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh----------hhCCccCCEEEeCCC-ccCccchhh
Confidence 999999987 333433 89999999 999986 566665432 347899999999764 666666666
Q ss_pred cccccccceee
Q 044700 759 ANVMPCLCSLS 769 (795)
Q Consensus 759 ~~~~p~L~~L~ 769 (795)
+..+++|+.|.
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 66677777765
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.5e-07 Score=97.38 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=106.5
Q ss_pred CceeecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhcCcchhc------cCceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYNSYKVMR------YFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~ 217 (795)
..+.||++++++|...|... ......+.|+|++|.|||++|+.|++...... .| ..++|++..-.+...++
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 35889999999999877642 22678899999999999999999998432111 12 35677777888899999
Q ss_pred HHHHHHhcCCcccCCCCCCChHHHHHHHHHh--cCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCc--EEEEEcCCh
Q 044700 218 SSIAEALGASASAFSSQGQELEPYLRYIRKS--IARNRFILVIDDVWIEDNSTWESLLQTLQEG-RPGS--KILVTTDDQ 292 (795)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~ 292 (795)
..|++++.+.... .....+.+...+... -.++++++|||++..-. +-+.+...+.+. ...+ .||.++-..
T Consensus 99 ~~I~~~L~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 99 EKIWFAISKENLC---GDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHhcCCCCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 9999999765321 222233333333332 24678999999984432 222333333211 1222 233333322
Q ss_pred H-----H----HHhhCCc-ccCCCCChHhHHHHHHHHhh
Q 044700 293 S-----I----ADKIGST-ENIRRASDEASWSLFESAAF 321 (795)
Q Consensus 293 ~-----v----a~~~~~~-~~l~~L~~~~~~~Lf~~~a~ 321 (795)
+ + ...+... +.+.+++.++-.+++.+++-
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1 2233323 88999999999999988773
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=2.2e-09 Score=115.38 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=80.9
Q ss_pred cCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccc-----c
Q 044700 520 VQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAE-----L 594 (795)
Q Consensus 520 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-----l 594 (795)
+++|++|++++|..+... ...+...+....+.|+.|+|++|. +.. ..+......+.+|++|+|++|.++. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~-l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQ-LDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCC-CCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCCC-CCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 345666666666532110 111222222212567777777763 311 1111222234566777777776652 1
Q ss_pred Cccc-CCCCcCcEEeccCCCCCC----ccchhhccCcccceeecCCccccc-----CcccccccccCCCcCCCCcceEEE
Q 044700 595 PEEL-CGLWNLQTLELNWCTNLE----TLPQGMGKLINLEHLLNVGTSLAS-----MPKEIERLTRLSAQPPEYLMRLEI 664 (795)
Q Consensus 595 p~~i-~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~l~~~~~L~~L~l 664 (795)
...+ ...++|++|+|++|.... .++..+..+++|++|++++|.+.. ++..+...+ +|+.|++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~--------~L~~L~L 218 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR--------QLQELNV 218 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS--------CCCEEEC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC--------CcCeEEC
Confidence 2222 245667777777763211 234445566677777777776542 122222222 3366666
Q ss_pred eccCCCC-----CCchhhhhcCccEEEEeCCCCC
Q 044700 665 RDYRGST-----FPSWIDLLSRLTILSLKDWTNC 693 (795)
Q Consensus 665 ~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~ 693 (795)
++|.... ++..+...++|++|+|++|.+.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6665442 2223335567777777777654
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.70 E-value=2e-07 Score=100.56 Aligned_cols=197 Identities=15% Similarity=0.108 Sum_probs=115.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+++.......+. ...+.... ....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~----~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVCD----NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSSH----HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCcccH----HHHHHhccCC
Confidence 579999999999999997753 346789999999999999999987321111110 00000000 0011110000
Q ss_pred CC----cccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhC
Q 044700 226 AS----ASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIG 299 (795)
Q Consensus 226 ~~----~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~ 299 (795)
.. ............++...+... ..+++.++|+||+...+...++.+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 000000112222222222111 135678999999976666677788877776556777777776443 211111
Q ss_pred ---CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 300 ---STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 300 ---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
..+++.+++.++..+++.+.+...+.. -..+....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 128999999999999998765322211 113456789999999998776554
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.6e-08 Score=105.36 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=40.1
Q ss_pred cccccccCCCCCCCeEEcCC-CCccccC-cccCCCCcCcEEeccCCCCCCccchhhccCcccceeecCCcccccCccc
Q 044700 569 IKIPAEIGNLEFLRYLNLSL-LKIAELP-EELCGLWNLQTLELNWCTNLETLPQGMGKLINLEHLLNVGTSLASMPKE 644 (795)
Q Consensus 569 ~~lp~~i~~l~~L~~L~L~~-~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~ 644 (795)
..+|. +..+.+|++|+|++ |.|+.+| ..|.+|++|++|+|++|...+..|..|.+|++|++|+|++|.|..+|..
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 34555 55555555555553 5555554 3455555555555555533333333455555555555555555555544
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=1.7e-07 Score=101.78 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=153.6
Q ss_pred ceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCC
Q 044700 499 KLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGN 577 (795)
Q Consensus 499 ~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~ 577 (795)
+++.+.+..+ +..+ ...|.++ +|+++.+.++ +..+....|.. |++|+.++|.+| .+ ..++.....
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~------l~~I~~~aF~~-c~~L~~l~l~~n-~l----~~I~~~aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST------LEQLKEDIFYY-CYNLKKADLSKT-KI----TKLPASTFV 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT------CCEECSSTTTT-CTTCCEEECTTS-CC----SEECTTTTT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC------ccEehHHHhhC-cccCCeeecCCC-cc----eEechhhEe
Confidence 4555655433 3333 3456564 6999988763 34455566777 999999999987 56 566665444
Q ss_pred CCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcccccCccc-ccccccCCCc
Q 044700 578 LEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTSLASMPKE-IERLTRLSAQ 654 (795)
Q Consensus 578 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~l~ 654 (795)
..+|+.+.|..+ ++.++. .+.++.+|+.+++..+ +..++.. |.+ .+|+.+.+. +.+..++.. +..++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~----- 271 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCP----- 271 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCT-----
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCC-----
Confidence 689999999854 777765 7888999999999874 5555544 555 789999884 345555432 44444
Q ss_pred CCCCcceEEEeccCCC-----CCC-chhhhhcCccEEEEeCCCCCCCCC--CCCCCCccCeeecccccCceeeCccccCC
Q 044700 655 PPEYLMRLEIRDYRGS-----TFP-SWIDLLSRLTILSLKDWTNCEQLA--PLGNLPSLESLSLFSMGSVRKVGNEFLGI 726 (795)
Q Consensus 655 ~~~~L~~L~l~~~~~~-----~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 726 (795)
+|+.+.+.++... .++ ..+..+++|+.+.|.++ + ..++ .|.+|++|+.+.|.+ +++.++...
T Consensus 272 ---~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a--- 341 (401)
T 4fdw_A 272 ---ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPA--NVTQINFSA--- 341 (401)
T ss_dssp ---TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECT--TCCEECTTS---
T ss_pred ---CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECc--cccEEcHHh---
Confidence 4488998877654 243 45668999999999853 3 3333 388999999999964 355554432
Q ss_pred CCCCCccCCCCCCcceeeecCCccccccccccccccc-ccceeeecC
Q 044700 727 KSGIASSVTYFPRLKSLKFVNMEEWGDWECEMANVMP-CLCSLSFVY 772 (795)
Q Consensus 727 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~p-~L~~L~l~~ 772 (795)
+.++ +|+.|.+.++ .+..+.......+| ++..|.+-.
T Consensus 342 -------F~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 342 -------FNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -------SSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -------CCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 3357 8999999886 34444333333343 566666543
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=1.6e-07 Score=98.84 Aligned_cols=178 Identities=16% Similarity=0.081 Sum_probs=111.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
.+++|++..++.+.+++... ....+.++|++|+||||+|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------------ 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------------ 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC------------
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC------------
Confidence 57999999999999988775 334489999999999999999987321 11111 223344332111
Q ss_pred cCCcccCCCCCCChHHHHHHHHHh--c-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhCC
Q 044700 225 GASASAFSSQGQELEPYLRYIRKS--I-ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIGS 300 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~ 300 (795)
.....+....+... + .+++.++|+|++........+.+...+.....+.++|+||.... +......
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111222222111 1 25688999999966555556666666665556778888776543 2111111
Q ss_pred ---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 301 ---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 301 ---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
.+++.+++.++..+++...+...+..- -.+....+++.++|.+..+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 289999999999999987764322211 134567788889998875443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=9.3e-08 Score=102.08 Aligned_cols=103 Identities=20% Similarity=0.072 Sum_probs=86.2
Q ss_pred CeEEcCCC-CccccCcccCCCCcCcEEeccC-CCCCCccc-hhhccCcccceeecCCcccccCcc-cccccccCCCcCCC
Q 044700 582 RYLNLSLL-KIAELPEELCGLWNLQTLELNW-CTNLETLP-QGMGKLINLEHLLNVGTSLASMPK-EIERLTRLSAQPPE 657 (795)
Q Consensus 582 ~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~l~~~~ 657 (795)
..++++++ .++.+|. +..+.+|++|+|++ | .+..+| ..|.+|++|++|+|++|.|..+|+ .++.|++|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------ 82 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------ 82 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence 35688888 8999999 99999999999996 6 566665 679999999999999999998775 46777766
Q ss_pred CcceEEEeccCCCCCCchhhhhcCccEEEEeCCCCCC
Q 044700 658 YLMRLEIRDYRGSTFPSWIDLLSRLTILSLKDWTNCE 694 (795)
Q Consensus 658 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 694 (795)
+.|++++|....+|..+....+|+.|+|.+|.+..
T Consensus 83 --~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 83 --SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp --CEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred --CEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 99999999999898766544449999999998653
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.57 E-value=5.5e-08 Score=93.91 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=40.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..++||+++++++.+++... ..+.+.|+|.+|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999875 5577899999999999999999883
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.47 E-value=2.5e-08 Score=107.15 Aligned_cols=160 Identities=16% Similarity=0.041 Sum_probs=104.9
Q ss_pred ccceeEEEEEeeCCCCC-Ccccc-----ccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCccccc-cc
Q 044700 497 RVKLSHLFLRVSEGISF-PVSVS-----EVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENM-TI 569 (795)
Q Consensus 497 ~~~l~~l~l~~~~~~~~-~~~~~-----~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~ 569 (795)
...++.+++..+.+... ...+. ..++|++|++++|..+ .......... +++|+.|+|++| .+... ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~----~~~~~~l~~~-L~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD----PAGLRTLLPV-FLRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC----HHHHHHTHHH-HHTEEEEECCSS-CCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC----HHHHHHHHHH-HHhccHhhcCCC-CCCHHHHH
Confidence 44567777777766542 11222 2378999999998732 1222222333 678999999999 44210 01
Q ss_pred cccccc-CCCCCCCeEEcCCCCccc-----cCcccCCCCcCcEEeccCCCCCC----ccchhhccCcccceeecCCcccc
Q 044700 570 KIPAEI-GNLEFLRYLNLSLLKIAE-----LPEELCGLWNLQTLELNWCTNLE----TLPQGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 570 ~lp~~i-~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~l~ 639 (795)
.+...+ ...++|++|+|++|.++. ++..+..+++|++|+|++|.... .++..+...++|++|++++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 122222 356789999999999863 56667788999999999985322 24566778889999999999876
Q ss_pred c-----CcccccccccCCCcCCCCcceEEEeccCCC
Q 044700 640 S-----MPKEIERLTRLSAQPPEYLMRLEIRDYRGS 670 (795)
Q Consensus 640 ~-----lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~ 670 (795)
. ++..+...++ |+.|++++|...
T Consensus 225 ~~g~~~l~~~L~~~~~--------L~~L~Ls~N~i~ 252 (372)
T 3un9_A 225 DTAALALARAAREHPS--------LELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHHCSS--------CCEEECTTSSCC
T ss_pred HHHHHHHHHHHHhCCC--------CCEEeccCCCCC
Confidence 3 2233333444 499999998765
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=1.2e-07 Score=101.15 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=42.9
Q ss_pred cccccCcceEEeeccCCCc-ccc--h-hhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCc
Q 044700 516 SVSEVQNLRSLRIQYGSKT-CSL--I-SEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKI 591 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~-~~~--~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 591 (795)
++..+++|++|.+...... +.. . ...+...+.. +++|+.|+|++|..+ .++. + .+++|+.|+|..|.+
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l-----~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNL-----SIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTC-----BCCS-C-BCTTCSEEEEECSBC
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCc-----eecc-c-cCCCCcEEEEecCCC
Confidence 3456777777777543210 000 0 1123344455 667777777665211 2332 2 256666666666655
Q ss_pred cc-cCccc--CCCCcCcEEecc
Q 044700 592 AE-LPEEL--CGLWNLQTLELN 610 (795)
Q Consensus 592 ~~-lp~~i--~~L~~L~~L~L~ 610 (795)
.. ....+ ..+++|++|+|+
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEE
T ss_pred ChHHHHHHHHccCCCCcEEEEe
Confidence 41 11122 256666666664
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.46 E-value=5.2e-06 Score=88.05 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=139.5
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
++++|++..++++..++... ......|.|+|++|+|||++|+.+++ .....| +.++++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~---------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK---------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc----------
Confidence 57999999999999988752 22556789999999999999999987 332222 2333221111
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC------------------CCcE
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR------------------PGSK 284 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ 284 (795)
.......+.. ..+..+|+||++..........+...+.... ++..
T Consensus 94 ---------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 94 ---------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1112222221 2355789999997666555666666554432 1245
Q ss_pred EEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhhhc--
Q 044700 285 ILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGRTL-- 357 (795)
Q Consensus 285 iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~~L-- 357 (795)
+|.||.... +...++..+.+.+++.++...++.+.+-..+.. --.+..+.|++.+.|.|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 665554432 222222238999999999999998876432211 123456778888999985544333221
Q ss_pred ----C-CC--CHHHHHHHHhhhccccccccccccceeeeccCCChHHHHHHhhhhcccCCCcccChhHHHHHHHHcCCCC
Q 044700 358 ----H-FK--TEKEWQSILDSKMWQVQYIERHHFVPLWLSFTDMPFAVRMCFLYCAIFPKDYLINKDELIRSWMAQGYVH 430 (795)
Q Consensus 358 ----~-~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~ 430 (795)
. .. +......++.. +..+...++...+..+..++-. .+..+....+... .|.-
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~~- 292 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNS---------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSED- 292 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTCC-
T ss_pred HHHhhcCCccCHHHHHHHHHH---------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCCC-
Confidence 1 11 44444444432 1122334444444455444444 4444444443322 1211
Q ss_pred hhhhhhHHHH-HHHHccccccc
Q 044700 431 KEAVGQMCFD-QMVARSWFQKF 451 (795)
Q Consensus 431 ~~~~~~~~~~-~L~~~sll~~~ 451 (795)
......+++ .|++.+++...
T Consensus 293 -~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 293 -ENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp -HHHHHHTTHHHHHHTTSEEEE
T ss_pred -HHHHHHHHhHHHHHcCceecC
Confidence 233343444 67788888765
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=4.6e-07 Score=90.96 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=99.9
Q ss_pred Cceeecc---hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVD---EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
++|+|.+ ..++.+..+.... ..+.+.|+|++|+||||||+.+++ ........+.|++++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH---------
Confidence 4677633 5566666666554 567899999999999999999998 33333345667766432110
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhh--HHHHHHhhcCC-CCC-cEEEEEcCCh------
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNST--WESLLQTLQEG-RPG-SKILVTTDDQ------ 292 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~------ 292 (795)
.. + .+ +.+ .++.+||+||+....... .+.+...+... ..+ .++|+||+..
T Consensus 95 -----~~----------~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST----------A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG----------G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH----------H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 011 345689999985543222 33343332211 122 2477776532
Q ss_pred ---HHHHhhC--CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 293 ---SIADKIG--STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 293 ---~va~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.+...+. ..+++.+++.++..+++...+...+.. --.+....+++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHH
Confidence 2222222 338999999999999998876432211 11355678888899988665443
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.7e-06 Score=92.51 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=114.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++.......+. ..+.++.+.......+ ++.+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 57999999999999999876 333489999999999999999998421111121 2334444433333222 2222222
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhC---C
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIG---S 300 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~---~ 300 (795)
...... ..... .....-.+++-+|++|++..........+...+.......++|++|.... +..... .
T Consensus 114 ~~~~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 114 ARLTVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHSCCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred hhhccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 111100 00000 00111124567999999866555566667766665555667777765442 211111 1
Q ss_pred cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 301 TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 301 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
.+.+.+++.++....+...+...+... -.+..+.|++.++|.|..+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 288999999999999988763322111 1356778999999998765443
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=4.9e-08 Score=91.33 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=75.6
Q ss_pred cCccEEEEeCCCCCC-CCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccccccc
Q 044700 680 SRLTILSLKDWTNCE-QLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWECEM 758 (795)
Q Consensus 680 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 758 (795)
.+|+.|++++|.+.. .+..+.++++|+.|+|++|..+++.+-....... ..+++|++|++++|+++++-....
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~------~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE------NLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH------HHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc------cccCCCCEEEcCCCCcCCHHHHHH
Confidence 469999999998654 4555789999999999999988765443322100 014589999999999888755544
Q ss_pred cccccccceeeecCCCCCcCCC-------CCCCcceec
Q 044700 759 ANVMPCLCSLSFVYCPELKALP-------GIFLSQVIK 789 (795)
Q Consensus 759 ~~~~p~L~~L~l~~C~~L~~lP-------~~L~~L~i~ 789 (795)
...+|+|++|++++|++++... ..++++++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 4559999999999999988621 346666653
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=3.7e-06 Score=92.24 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=115.1
Q ss_pred Ccee-ecch--hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCc--eeEEEEeCCCCCHHHHHHHH
Q 044700 146 SETC-GVDE--EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFD--IRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 220 (795)
+.|| |... ....+........ ....+.|+|++|+||||||+.+++ .....|. .+++++.. .+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHH
Confidence 3565 6443 3344444444443 267899999999999999999998 4444442 34555433 344445
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh--hhHHHHHHhhcC-CCCCcEEEEEcCCh-----
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN--STWESLLQTLQE-GRPGSKILVTTDDQ----- 292 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~----- 292 (795)
...+.... . ..+...+..+..+|++||+..... ...+.+...+.. ...|..||+||...
T Consensus 176 ~~~~~~~~---------~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 176 VDSMKEGK---------L----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHTTC---------H----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHccc---------H----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 54443221 1 123333343667999999954322 233344444322 23567888888752
Q ss_pred ----HHHHhhC--CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHhh------hcCCC
Q 044700 293 ----SIADKIG--STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVGR------TLHFK 360 (795)
Q Consensus 293 ----~va~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg~------~L~~~ 360 (795)
.+...+. ..+.+++++.++..+++.+.+...+.. .+ .+....|++.+.|.+-.+.-+-. ...+.
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~ 318 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK 318 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2333332 238999999999999998877422211 11 23466788888888854432211 11222
Q ss_pred --CHHHHHHHHhh
Q 044700 361 --TEKEWQSILDS 371 (795)
Q Consensus 361 --~~~~w~~~l~~ 371 (795)
+.+.++.++..
T Consensus 319 ~It~~~~~~~l~~ 331 (440)
T 2z4s_A 319 EVDLKEAILLLKD 331 (440)
T ss_dssp CCCHHHHHHHTST
T ss_pred CCCHHHHHHHHHH
Confidence 66677776654
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=2.8e-06 Score=90.74 Aligned_cols=193 Identities=16% Similarity=0.147 Sum_probs=107.1
Q ss_pred CceeecchhHHHHHHHH-hCCCCCCcEEEEEcCCCChHHHHHHHHhcCc---chhc-cCce-------------------
Q 044700 146 SETCGVDEEKEDLVSKL-LSSSTEIPIISILGTEGTGKTTLATLAYNSY---KVMR-YFDI------------------- 201 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~-~F~~------------------- 201 (795)
.+++|.+..++.+.+++ ... ....+.|+|+.|+||||+|+.+++.. .... .+++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 57899999999988888 443 33339999999999999999887621 0000 0110
Q ss_pred -eEEEEeCCCC-CHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 044700 202 -RIWVGASADS-DVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG 279 (795)
Q Consensus 202 -~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~ 279 (795)
.+.+..+... ......+++++.+..... ..... .+. .+.+++-++|+|++..-+....+.+...+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000122333333322111 00000 000 02346779999999776666667777776654
Q ss_pred CCCcEEEEEcCCh-HHHHhhCC--c-ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 280 RPGSKILVTTDDQ-SIADKIGS--T-ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 280 ~~gs~iivTtR~~-~va~~~~~--~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
..+..+|++|.+. .+...... . +++++++.++....+...+...+..-. ..+....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE---TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC---CSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHHHcCCCHHHHHHH
Confidence 5567777777553 22222211 2 899999999999999887633221111 0245678888999988655443
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.33 E-value=1.1e-05 Score=86.51 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=109.2
Q ss_pred CceeecchhHHH---HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe----CCCCCHHHHHH
Q 044700 146 SETCGVDEEKED---LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA----SADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~~~~ 218 (795)
++++|++..++. +...+.......+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +........+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-CcccccchhhhhcccchhHHHH
Confidence 589999988776 45555555323468999999999999999999983 32211 1122221 22333444444
Q ss_pred HHHHHhcCCc---------------------c---cCC--CCCCChHHHHHHHHHhc-----CCC----eEEEEEeCCCC
Q 044700 219 SIAEALGASA---------------------S---AFS--SQGQELEPYLRYIRKSI-----ARN----RFILVIDDVWI 263 (795)
Q Consensus 219 ~i~~~l~~~~---------------------~---~~~--~~~~~~~~~~~~l~~~l-----~~~----~~LlVlDdvw~ 263 (795)
.......... . ... .......++...+.... .++ +.+|++|++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 4443321100 0 000 00011223333332221 233 35999999976
Q ss_pred CChhhHHHHHHhhcCCCCCcEEEEEcC-C----------------hHHHHhhCCcccCCCCChHhHHHHHHHHhhcCCCc
Q 044700 264 EDNSTWESLLQTLQEGRPGSKILVTTD-D----------------QSIADKIGSTENIRRASDEASWSLFESAAFFNRSQ 326 (795)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~gs~iivTtR-~----------------~~va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 326 (795)
...+....+...+...... .++++|. . +.+...+.. +.+.+++.++..+++...+...+..
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6666677777766554433 3443432 1 112222111 8899999999999998876432221
Q ss_pred hhhhhHHHHHHHHHHHcC-CCchHHHH
Q 044700 327 EVREHLEHIGRKIVQQCH-DLPLLIKI 352 (795)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~-G~PLai~~ 352 (795)
--.+..+.|++.+. |.|-.+..
T Consensus 279 ----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 279 ----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp ----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred ----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 11345677888887 77755443
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=2.3e-06 Score=88.39 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=99.6
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
++++|.++.+++|...+... -...+.+.|+|++|+|||+||+.+++ ..... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHHH--
Confidence 58999999999998887431 11456799999999999999999998 33222 22333221100
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Ch---hhHHHHHHhhc--C
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DN---STWESLLQTLQ--E 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~---~~~~~l~~~l~--~ 278 (795)
.. .......+...+.......+.+|+||++... +. ..+..+...+. .
T Consensus 90 ------------~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ------------KF-----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------CS-----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------hc-----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 00 0011112222233333456789999998321 11 11222222222 2
Q ss_pred CCCCcEEEEEcCChHHHH-------hhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC-CchHH
Q 044700 279 GRPGSKILVTTDDQSIAD-------KIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD-LPLLI 350 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~-------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai 350 (795)
...+..||.||....... .+...+.++..+.++..+++...+..... ..... ...+++.+.| .|-.+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHH
Confidence 234667788887553211 11112889999999999999887643221 11111 3566667766 44344
Q ss_pred HH
Q 044700 351 KI 352 (795)
Q Consensus 351 ~~ 352 (795)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=5.2e-06 Score=86.77 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=92.8
Q ss_pred ceeecchhHHHHHHHHhCC-------------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCH
Q 044700 147 ETCGVDEEKEDLVSKLLSS-------------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDV 213 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 213 (795)
.++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 6899999999888776421 125567999999999999999988873221112111123333211
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcE
Q 044700 214 LSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE---------DNSTWESLLQTLQEGRPGSK 284 (795)
Q Consensus 214 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ 284 (795)
.+.... ...........+... +..+|++|++..- .......+...+.....+..
T Consensus 109 ---------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 000000 011111222222222 3359999998522 44455667777766666778
Q ss_pred EEEEcCChHH----------HHhhCCcccCCCCChHhHHHHHHHHhhc
Q 044700 285 ILVTTDDQSI----------ADKIGSTENIRRASDEASWSLFESAAFF 322 (795)
Q Consensus 285 iivTtR~~~v----------a~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 322 (795)
+|.||..... ...+...+.+++++.++..+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888864432 2222222889999999999999887643
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=2.8e-06 Score=93.04 Aligned_cols=174 Identities=19% Similarity=0.160 Sum_probs=100.7
Q ss_pred CceeecchhH---HHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-CCHHHHHHHHH
Q 044700 146 SETCGVDEEK---EDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-SDVLSVASSIA 221 (795)
Q Consensus 146 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~ 221 (795)
.++||.+..+ ..+...+... ....+.|+|.+|+||||||+.+++ .....| +.++.. ....+ .+.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~-ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE-IREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-HHHHH
Confidence 5799998888 6788888776 557899999999999999999998 333332 222221 12221 11111
Q ss_pred HHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChH--HHHh-
Q 044700 222 EALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKIL-VTTDDQS--IADK- 297 (795)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~--va~~- 297 (795)
... ......+++.+|++|++..-.....+.+...+..+ ...+| .||.+.. +...
T Consensus 96 ~~a--------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 96 ERA--------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHH--------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHH--------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111 00112467889999999765555555666666542 23333 3555542 1111
Q ss_pred hCC--cccCCCCChHhHHHHHHHHhhcCCCc---hhhhhHHHHHHHHHHHcCCCchHHH
Q 044700 298 IGS--TENIRRASDEASWSLFESAAFFNRSQ---EVREHLEHIGRKIVQQCHDLPLLIK 351 (795)
Q Consensus 298 ~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~~~~~~~~i~~~c~G~PLai~ 351 (795)
... .+.+.+++.++...++.+.+...... ....-..+..+.|++.++|.+-.+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 111 28899999999999998876421100 0011124556778888888875443
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.27 E-value=1.1e-05 Score=84.91 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=103.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
++++|.+..++.+.+++.... ...++.+.|++|+||||+|+.+++ ... ...+.++.+.. .. +.++.++....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~~-~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-KI-DFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-CH-HHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-CH-HHHHHHHHHHH
Confidence 579999999999999998653 457788888899999999999987 332 12344554332 22 22222222211
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChH-----HHHhhC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-NSTWESLLQTLQEGRPGSKILVTTDDQS-----IADKIG 299 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-----va~~~~ 299 (795)
... ...+++.++|+||+.... .+..+.+...+.....+.++|+||.... +...+
T Consensus 98 ~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~- 157 (324)
T 3u61_B 98 SAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC- 157 (324)
T ss_dssp HBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-
T ss_pred hhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-
Confidence 110 012477899999996554 4455666665554445677888876543 11111
Q ss_pred CcccCCCCChHhHHHHHHH-------HhhcCCCchhhhhHHHHHHHHHHHcCCCchH
Q 044700 300 STENIRRASDEASWSLFES-------AAFFNRSQEVREHLEHIGRKIVQQCHDLPLL 349 (795)
Q Consensus 300 ~~~~l~~L~~~~~~~Lf~~-------~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 349 (795)
..+++++++.++-.+++.. .+...+. ...+ .+....|++.++|.+-.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHH
Confidence 1288999998885444322 2211111 0000 25667788888887653
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=1.3e-05 Score=84.74 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=104.8
Q ss_pred chhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh--------------------ccCceeEEEEeCCCC
Q 044700 152 DEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM--------------------RYFDIRIWVGASADS 211 (795)
Q Consensus 152 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~ 211 (795)
++..+.+...+..+. -...+.++|+.|+||||+|+.+++...-. .+++ ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG- 84 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT-
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc-
Confidence 455667777776653 45679999999999999999988732100 0122 122222100
Q ss_pred CHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE
Q 044700 212 DVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKS----IARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 212 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 287 (795)
. .....+++...+... ..+++-++|+|++...+....+.+...+.....+..+|+
T Consensus 85 -----------------~----~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 85 -----------------K----NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp -----------------C----SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred -----------------C----CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 112223332222221 135678999999976666677788888876556777777
Q ss_pred EcCChH-HHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHHh
Q 044700 288 TTDDQS-IADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIVG 354 (795)
Q Consensus 288 TtR~~~-va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~lg 354 (795)
+|.+.. +....... +++.+++.++..+.+.+.. .. ..+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~------~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM------SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC------CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 766553 32222222 8999999999999888764 11 12345678899999997665544
No 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.4e-06 Score=92.75 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=82.2
Q ss_pred HhhhCCeeeEEecCCCCc----cccc-ccccccccCCCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCccch
Q 044700 546 LDQSRTTLRALDLSGQSW----YENM-TIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETLPQ 620 (795)
Q Consensus 546 ~~~~~~~L~~L~L~~~~~----~~~~-~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 620 (795)
... +++|+.|.+..... +.++ ...+...+..+++|+.|+|++|.-..+|. + .+++|++|+|..|........
T Consensus 135 ~~~-l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEK-FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHH-HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhh-cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445 78899998865421 1000 01244445677888888888773224444 3 378888888887643222222
Q ss_pred hhc--cCcccceeecCCc--ccccCcccccccccC-CCcCCCCcceEEEeccCCCC-CCchhh---hhcCccEEEEeCCC
Q 044700 621 GMG--KLINLEHLLNVGT--SLASMPKEIERLTRL-SAQPPEYLMRLEIRDYRGST-FPSWID---LLSRLTILSLKDWT 691 (795)
Q Consensus 621 ~i~--~l~~L~~L~l~~~--~l~~lp~~i~~L~~L-~l~~~~~L~~L~l~~~~~~~-lp~~i~---~l~~L~~L~L~~~~ 691 (795)
.+. .+++|++|+|+.+ .... -..+..+..+ ....+++|+.|++.+|.... .+..+. .+++|++|+|+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~-~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGF-DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTC-CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEecccccccc-chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 333 6788888887532 1100 0011111111 11234555666666554321 111111 35566666666655
Q ss_pred CCCC----CC-CCCCCCccCeeecccc
Q 044700 692 NCEQ----LA-PLGNLPSLESLSLFSM 713 (795)
Q Consensus 692 ~~~~----l~-~l~~l~~L~~L~L~~~ 713 (795)
+... ++ .+..+++|+.|+|++|
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCC
Confidence 4331 11 1234556666666554
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=6.5e-06 Score=92.40 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=107.0
Q ss_pred CceeecchhHHHHHHHHhCCC---------------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC
Q 044700 146 SETCGVDEEKEDLVSKLLSSS---------------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD 210 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 210 (795)
.+++|++..++++.+++.... ...+.+.|+|++|+||||+|+.+++. .. + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCc
Confidence 579999999999999997610 13478999999999999999999983 31 2 2345555544
Q ss_pred CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC---hhhHHHHHHhhcCCCCCcEEEE
Q 044700 211 SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED---NSTWESLLQTLQEGRPGSKILV 287 (795)
Q Consensus 211 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~---~~~~~~l~~~l~~~~~gs~iiv 287 (795)
.... +....+........ ...-...... .....+++.+||+|++.... ...+..+...+... +..||+
T Consensus 114 ~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIl 184 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS----VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLIL 184 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC----STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEE
T ss_pred chHH-HHHHHHHHHhcccc----HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEE
Confidence 4432 22222222211110 0000000000 00123678899999984432 22345555444432 233555
Q ss_pred EcCChH--HHHhhCCc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc-hHHHHHh
Q 044700 288 TTDDQS--IADKIGST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP-LLIKIVG 354 (795)
Q Consensus 288 TtR~~~--va~~~~~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~lg 354 (795)
++.... ........ +.+++++.++..+++...+...+.... .+....|++.++|.+ -++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 443322 11112221 889999999999999877643222111 234667888899854 4555443
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.15 E-value=1.2e-05 Score=82.34 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=100.6
Q ss_pred CceeecchhHHHHHH-------HHhCC-CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHH
Q 044700 146 SETCGVDEEKEDLVS-------KLLSS-STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVA 217 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 217 (795)
..++|....++++.. .+... ......+.|+|++|+|||+||+.+++. ....| +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-------
Confidence 467888877776666 33211 225678999999999999999999983 22222 22322211
Q ss_pred HHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC----------ChhhHHHHHHhhcC---CCCCcE
Q 044700 218 SSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE----------DNSTWESLLQTLQE---GRPGSK 284 (795)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~----------~~~~~~~l~~~l~~---~~~gs~ 284 (795)
+.+.. .......+...+......+..+|+||++... .......+...+.. ......
T Consensus 101 ------~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ------MIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ------CTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ------hcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 0000112223333334467889999997321 11122333333332 223445
Q ss_pred EEEEcCChHHHHhh---CC---cccCCCCCh-HhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC------chHHH
Q 044700 285 ILVTTDDQSIADKI---GS---TENIRRASD-EASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL------PLLIK 351 (795)
Q Consensus 285 iivTtR~~~va~~~---~~---~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~------PLai~ 351 (795)
||.||......... .. .+.+++++. ++...++.+.. .. ..+....|++.+.|. .-++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~------~~~~~~~l~~~~~g~~~~g~ir~l~~ 240 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF------KDKERTTIAQQVKGKKVWIGIKKLLM 240 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS------CHHHHHHHHHHHTTSEEEECHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC------CHHHHHHHHHHhcCCCccccHHHHHH
Confidence 67777776554431 11 178889988 66666655421 11 133466778888773 33333
Q ss_pred HHhhhcCCCCHHHHHHHHh
Q 044700 352 IVGRTLHFKTEKEWQSILD 370 (795)
Q Consensus 352 ~lg~~L~~~~~~~w~~~l~ 370 (795)
.+-..........|..++.
T Consensus 241 ~l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 241 LIEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHhhhchHHHHHHHHH
Confidence 3333322224445555554
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=1.1e-05 Score=82.03 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=97.3
Q ss_pred CceeecchhHHHHHHHHh---CCC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..++++.+++. ... ...+.|.|+|++|+|||++|+.+++ +.... .+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--
Confidence 578999988887766543 211 1346688999999999999999998 33322 234444322110
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC------------C---hhhHHHHHHhhcCC-
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE------------D---NSTWESLLQTLQEG- 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~------------~---~~~~~~l~~~l~~~- 279 (795)
. .......+...+.......+.+|++|++..- . ......+...+...
T Consensus 79 ------------~-----~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 79 ------------I-----GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp ------------S-----TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ------------c-----cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 0111122223333333456789999999532 0 11223344333322
Q ss_pred -CCCcEEEEEcCChHHH-Hh-hC-----CcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 280 -RPGSKILVTTDDQSIA-DK-IG-----STENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 280 -~~gs~iivTtR~~~va-~~-~~-----~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
..+..||.||...... .. .. ..+.++..+.++-.+++...+....... ........+++.+.|.+-
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ---SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB---THHHHHHHHHHTCTTCCH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHCCCCCH
Confidence 2355666676554321 11 11 1277889999999999988764322211 112234677888887654
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=3.2e-06 Score=80.90 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=40.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..++||+.+++.+.+.+... ..+.+.|+|.+|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999875 5567899999999999999999873
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.12 E-value=6.1e-05 Score=78.08 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=100.0
Q ss_pred CceeecchhHHHHHHHHhCC----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..++.+.+.+... ....+.|.|+|++|+||||+|+.+++ ..... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHhh---
Confidence 57999999999998887431 11357899999999999999999998 33222 23343332110
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHH-HHHHHhcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcC---C-
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYL-RYIRKSIARNRFILVIDDVWIED-----------NSTWESLLQTLQE---G- 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdvw~~~-----------~~~~~~l~~~l~~---~- 279 (795)
. ......... ..+......++.+|++|++.... ......+...+.. .
T Consensus 93 -----------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 -----------K------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -----------S------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -----------c------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 0 111122222 22222334567899999983321 1111122222221 1
Q ss_pred -CCCcEEEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHH
Q 044700 280 -RPGSKILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKI 352 (795)
Q Consensus 280 -~~gs~iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~ 352 (795)
+.+..||.||.... +...+...+.++..+.++...++...+....... .......+++.+.|.+- ++..
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHH
Confidence 13455666666542 2333333377777788888888877653221111 12356678888888875 5544
Q ss_pred Hh
Q 044700 353 VG 354 (795)
Q Consensus 353 lg 354 (795)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=7.9e-06 Score=74.75 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=70.4
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcch-hccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKV-MRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~---~v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE---FV-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC---CE-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC---EE-EECCCCCcc------------
Confidence 5889999999999888643223455789999999999999999974211 122 23 655543221
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDD 291 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 291 (795)
.. ....+... ..-.|++|++..-.......+...+.......++|.||..
T Consensus 66 ----------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 00 11122221 2246899999776665666676666555556677777754
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.11 E-value=2.2e-05 Score=82.48 Aligned_cols=180 Identities=19% Similarity=0.137 Sum_probs=102.6
Q ss_pred CceeecchhHHHHHHHHh----------CCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL----------SSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..++.|...+. ......+-|.++|++|+|||+||+++++ .....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------H
Confidence 689999999999998872 1111356799999999999999999998 333332 233221 1
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHH-HHHHHHHhcCCCeEEEEEeCCCCCCh-----------hhHHHHHHhhc---CCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEP-YLRYIRKSIARNRFILVIDDVWIEDN-----------STWESLLQTLQ---EGR 280 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdvw~~~~-----------~~~~~l~~~l~---~~~ 280 (795)
+ . .. .....+. +...+......++.+|+||++..-.. .....+...+. ...
T Consensus 87 l----~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 L----V----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H----H----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H----h----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1 00 0011111 22222233345678999999842211 11233443333 234
Q ss_pred CCcEEEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC-CchHHHHHh
Q 044700 281 PGSKILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD-LPLLIKIVG 354 (795)
Q Consensus 281 ~gs~iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~lg 354 (795)
.+..||.||.... +...+...+.++..+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566666776543 22222233788889999999999887643221111 2345677788877 454555444
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=3.1e-05 Score=81.99 Aligned_cols=178 Identities=12% Similarity=0.163 Sum_probs=105.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-Cc-eeEEEEeCCCCCHHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-FD-IRIWVGASADSDVLSVASSIAEA 223 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~~ 223 (795)
..++|.+..++.|...+..+ ....+.++|+.|+||||+|+.+++. .... +. ...-++.+.......+ ++++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~ 99 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVV-RNQIKD 99 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHH-HHHHHH
Confidence 46889999899998888876 3334899999999999999999883 2111 11 1222333322222211 111111
Q ss_pred hcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH-HHHhhCC--
Q 044700 224 LGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS-IADKIGS-- 300 (795)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~-- 300 (795)
+.... ....+.+-++|+|++........+.+...+.......++|++|.... +......
T Consensus 100 ~~~~~------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 100 FASTR------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHBC------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHhhc------------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11000 00123467899999865555566777766665555667777665432 2111111
Q ss_pred -cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHH
Q 044700 301 -TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLI 350 (795)
Q Consensus 301 -~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 350 (795)
.+.+.+++.++..+.+...+-..+.. . ..+..+.|++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~-i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLK-L---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC-B---CHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHH
Confidence 27889999999888887765222111 1 1345677888889887643
No 190
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=3.6e-05 Score=83.37 Aligned_cols=37 Identities=8% Similarity=0.252 Sum_probs=17.2
Q ss_pred cccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecC
Q 044700 516 SVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLS 559 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 559 (795)
+|.+|.+|+++.+..+ +..+....|.. +.+|+.++|.
T Consensus 66 AF~~c~~L~~i~lp~~------i~~I~~~aF~~-c~~L~~i~lp 102 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST------VREIGEFAFEN-CSKLEIINIP 102 (394)
T ss_dssp TTTTCTTEEEEECCTT------CCEECTTTTTT-CTTCCEECCC
T ss_pred HhhCCCCceEEEeCCC------ccCcchhHhhC-CCCCcEEEeC
Confidence 4455555555555432 22233334444 5555555554
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=2.1e-05 Score=82.81 Aligned_cols=175 Identities=16% Similarity=0.145 Sum_probs=95.3
Q ss_pred Ccee-ecc--hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETC-GVD--EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~v-Gr~--~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
++|| |.. .....+..++.........+.|+|++|+||||||+.+++. ....-..++++++ .++...+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~ 82 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVE 82 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHH
Confidence 3454 533 2344455555554324567899999999999999999983 3221123455543 233444444
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh--hhHHHHHHhhcC-CCCCcEEEEEcCCh-------
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN--STWESLLQTLQE-GRPGSKILVTTDDQ------- 292 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~------- 292 (795)
.+... ..... ..... +..+|++||+..... .....+...+.. ...|..||+||...
T Consensus 83 ~~~~~---------~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 83 HLKKG---------TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHT---------CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHcC---------cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 33221 11111 22222 356999999854321 222334333321 13456788777532
Q ss_pred --HHHHhhCC--cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch
Q 044700 293 --SIADKIGS--TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL 348 (795)
Q Consensus 293 --~va~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL 348 (795)
.+...+.. .+++++ +.++..+++...+...+..-. .+....|++.+ |..-
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 22233322 288999 999999999887743222111 34456677777 6653
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.05 E-value=2.4e-05 Score=83.44 Aligned_cols=181 Identities=15% Similarity=0.069 Sum_probs=101.3
Q ss_pred CceeecchhHHHHHHHHhC----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+.+++ ..... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhhc---
Confidence 5799999999999888742 111467899999999999999999997 33222 23444432111
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHH-HHHHHHhcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhhcCC----
Q 044700 216 VASSIAEALGASASAFSSQGQELEPY-LRYIRKSIARNRFILVIDDVWIE-----------DNSTWESLLQTLQEG---- 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdvw~~-----------~~~~~~~l~~~l~~~---- 279 (795)
. ........ ...+......++.+|+||++... .......+...+...
T Consensus 156 -----------~------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 156 -----------K------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp -----------S------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred -----------c------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 0 00011111 12222222356789999998211 001123343333321
Q ss_pred CCCcEEEEEcCChH-H----HHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCC-CchHHHHH
Q 044700 280 RPGSKILVTTDDQS-I----ADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHD-LPLLIKIV 353 (795)
Q Consensus 280 ~~gs~iivTtR~~~-v----a~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~l 353 (795)
..+..||.||.... + ...+...+.+...+.++..+++...+......- .......|++.+.| .+-.|..+
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHH
Confidence 23445565665432 2 222222278888889998888877663221111 13456778888888 55566655
Q ss_pred hh
Q 044700 354 GR 355 (795)
Q Consensus 354 g~ 355 (795)
..
T Consensus 295 ~~ 296 (357)
T 3d8b_A 295 CR 296 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.04 E-value=3.4e-05 Score=82.06 Aligned_cols=181 Identities=19% Similarity=0.143 Sum_probs=100.0
Q ss_pred CceeecchhHHHHHHHHhCC----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..++.|...+... ....+-|.++|++|+|||+||+.+++ .....| +.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeHH------H
Confidence 57999999999998877311 11345688999999999999999998 333222 223221 1
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChh-----------hHHHHHHhhcC---CCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNS-----------TWESLLQTLQE---GRP 281 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~ 281 (795)
+. ... .......+...+......++.+|+||++...... ....+...+.. ...
T Consensus 120 l~--------~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 LV--------SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH--------SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred Hh--------hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 000 0111122222233333457889999998432110 12233333321 234
Q ss_pred CcEEEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC-chHHHHHh
Q 044700 282 GSKILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL-PLLIKIVG 354 (795)
Q Consensus 282 gs~iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~lg 354 (795)
+..||.||.... +...+...+.+...+.++-.+++............ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666665442 22222222788888999999999877632211111 23456788888884 44455444
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=3.1e-06 Score=81.07 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=72.6
Q ss_pred cccccCcceEEeeccC-CCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccc-
Q 044700 516 SVSEVQNLRSLRIQYG-SKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAE- 593 (795)
Q Consensus 516 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~- 593 (795)
.+...+.|++|++++| ...... ...+...+.. .+.|++|+|++|..-......+...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3456777888888777 532211 1223344555 67788888888742211111233444555778888888887762
Q ss_pred ----cCcccCCCCcCcEEec--cCCCCCCc----cchhhccCcccceeecCCcccc
Q 044700 594 ----LPEELCGLWNLQTLEL--NWCTNLET----LPQGMGKLINLEHLLNVGTSLA 639 (795)
Q Consensus 594 ----lp~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~l~~L~~L~l~~~~l~ 639 (795)
+...+...++|++|+| ++|..... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5566777777888888 65633221 3344556677888888777654
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.98 E-value=0.00013 Score=76.37 Aligned_cols=182 Identities=18% Similarity=0.142 Sum_probs=100.7
Q ss_pred CceeecchhHHHHHHHHhC----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++++|.++.++.|.+.+.. .....+-|.++|++|+|||+||+++++... ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 6899999999988887631 111447899999999999999999998320 111 2233332211
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-------Chhh----HHHHHHhhcC---CCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-------DNST----WESLLQTLQE---GRP 281 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-------~~~~----~~~l~~~l~~---~~~ 281 (795)
... .......+...+......++.+|++|++... .... ...+...+.. ...
T Consensus 84 ----------~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 ----------SKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ----------CSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ----------hhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 000 1112222222333333467889999998432 0011 1223333332 234
Q ss_pred CcEEEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC-chHHHHHh
Q 044700 282 GSKILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL-PLLIKIVG 354 (795)
Q Consensus 282 gs~iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~lg 354 (795)
+..||.||.... +...+...+.++..+.++-.+++......... .. .......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555664332 22222222788888889888998876532211 10 123466788888886 44455554
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.98 E-value=1.4e-05 Score=76.04 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=65.6
Q ss_pred cchhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcc
Q 044700 151 VDEEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASAS 229 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 229 (795)
....++.+.+++..-.. ....+.|+|++|+||||||+.+++.......+ .++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 34445555555544221 45789999999999999999999843212222 23344 344555555544432211
Q ss_pred cCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcCC
Q 044700 230 AFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWE--SLLQTLQEG-RPGSKILVTTDD 291 (795)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 291 (795)
......+. +.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 92 ---------~~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ---------TKFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ---------SHHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ---------HHHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 12222222 4568999999743222333 233333221 256788888853
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.95 E-value=0.00012 Score=79.16 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=98.1
Q ss_pred CceeecchhHHHHHHHHhCC----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.+..++.|..++... ....+-|.|+|.+|+|||+||+.+++ +.... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc--
Confidence 58999999999999887321 11357899999999999999999987 32222 233333322110
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhhcC----CC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DNSTWESLLQTLQE----GR 280 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~~~~~~l~~~l~~----~~ 280 (795)
. .......+...+.......+.+|+||++... .......+...+.. ..
T Consensus 188 ~-----------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 188 Y-----------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c-----------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0011111222222222345679999998321 01111222222221 12
Q ss_pred CCcEEEEEcCChH-----HHHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCch-HHHHHh
Q 044700 281 PGSKILVTTDDQS-----IADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPL-LIKIVG 354 (795)
Q Consensus 281 ~gs~iivTtR~~~-----va~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~lg 354 (795)
....||.||.... +...+...+.+...+.++..+++...+......- ..+....|++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3345555664432 2222222277888999999999987763322111 12355678888888554 555544
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=0.00061 Score=71.72 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=95.7
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS---STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
+.++|.+..++.+...+... ......+.++|++|+||||||+.+++ .....|. . .+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~--~sg~~----------- 86 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---V--TSGPV----------- 86 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---E--EETTT-----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---E--EechH-----------
Confidence 46889888777777666532 22456799999999999999999998 3322221 1 11110
Q ss_pred HhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC--------C----------CcE
Q 044700 223 ALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR--------P----------GSK 284 (795)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~----------gs~ 284 (795)
.....++...+ ..+. ++.++++|++..-.....+.+...+.... . .-.
T Consensus 87 ------------~~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 87 ------------LVKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------CCSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------hcCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 00111111111 1122 33477788874433334444433332211 0 112
Q ss_pred EE-EEcCChHHHHhhCC----cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHHH
Q 044700 285 IL-VTTDDQSIADKIGS----TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKIV 353 (795)
Q Consensus 285 ii-vTtR~~~va~~~~~----~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~l 353 (795)
++ .|++...+...... ...+++.+.++-.+++.+.+-..+.. ...+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 22 35554433222221 27899999999999998876322211 12356788999999999655433
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=8.8e-06 Score=79.17 Aligned_cols=124 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred Cceeecc----hhHHHHHHHHhCCCCC--CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHH
Q 044700 146 SETCGVD----EEKEDLVSKLLSSSTE--IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASS 219 (795)
Q Consensus 146 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 219 (795)
++|++.+ ..++.+..++...... ...+.|+|.+|+||||||+.+++ ........++|++++ .+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHH
Confidence 4566544 3445556666554322 27899999999999999999998 443444456677543 34444
Q ss_pred HHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHH--HHHH-hhcCC-CCCcEEEEEcCC
Q 044700 220 IAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWE--SLLQ-TLQEG-RPGSKILVTTDD 291 (795)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~--~l~~-~l~~~-~~gs~iivTtR~ 291 (795)
+...+. ..........+.. . -+|||||++......|. .+.. .+... ..+.++|+||..
T Consensus 97 ~~~~~~---------~~~~~~~~~~~~~----~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQ---------DQTMNEKLDYIKK----V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC------------CCCHHHHHHHHH----S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhc---------cchHHHHHHHhcC----C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 433221 1112333333332 1 39999999653222221 1111 11111 235578888763
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.91 E-value=1.2e-05 Score=73.22 Aligned_cols=110 Identities=7% Similarity=0.096 Sum_probs=63.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
-.++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++... ..+.++++. -..+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~~-------- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDMP-------- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHCH--------
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHhh--------
Confidence 4688999999988888764222334578999999999999999998422 122222221 011110
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-RPGSKILVTTD 290 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR 290 (795)
... .... +.-.+++|++..........+...+... ..+.++|.||.
T Consensus 68 ----------------~~~-~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 68 ----------------MEL-LQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ----------------HHH-HHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ----------------hhH-HHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 111 1111 1236889999766655555565555433 34567887774
No 201
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=4.4e-06 Score=80.04 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=64.5
Q ss_pred hhhhhhHHhhhCCeeeEEecCCC-CcccccccccccccCCCCCCCeEEcCCCCcc-----ccCcccCCCCcCcEEeccCC
Q 044700 539 SEVLPKLLDQSRTTLRALDLSGQ-SWYENMTIKIPAEIGNLEFLRYLNLSLLKIA-----ELPEELCGLWNLQTLELNWC 612 (795)
Q Consensus 539 ~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~ 612 (795)
...+...+.. .+.|++|+|++| ..-......+...+...++|++|+|++|.|. .+...+...++|++|+|++|
T Consensus 25 ~~~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445555666 788899999887 4321111234455667788888888888876 24555666677888888887
Q ss_pred CCCC----ccchhhccCcccceeec--CCcccc
Q 044700 613 TNLE----TLPQGMGKLINLEHLLN--VGTSLA 639 (795)
Q Consensus 613 ~~~~----~lp~~i~~l~~L~~L~l--~~~~l~ 639 (795)
.... .+...+...++|++|++ ++|.+.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4322 14455666677788877 666654
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.90 E-value=0.00023 Score=76.95 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=46.2
Q ss_pred hhhcCccEEEEeCCCCCCCCC--CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcccccc
Q 044700 677 DLLSRLTILSLKDWTNCEQLA--PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDW 754 (795)
Q Consensus 677 ~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 754 (795)
..+++|+.+.+... ...++ .|.++.+|+.+.|.. +++.++... +.+|.+|+.+.+-+ .+..+
T Consensus 285 ~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a----------F~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 285 MNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDA----------FAGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT----------TTTCTTCCEEEECT--TCCBC
T ss_pred ccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhH----------hhCCCCCCEEEECc--ccCEE
Confidence 35566666665422 12222 266777777777753 345554332 33677888888754 34555
Q ss_pred cccccccccccceeeecC
Q 044700 755 ECEMANVMPCLCSLSFVY 772 (795)
Q Consensus 755 ~~~~~~~~p~L~~L~l~~ 772 (795)
....+..+++|+.+.+.+
T Consensus 349 ~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CGGGGTTCTTCCEEEESS
T ss_pred hHhHhhCCCCCCEEEECC
Confidence 555555677888887764
No 203
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=9e-05 Score=80.24 Aligned_cols=214 Identities=13% Similarity=0.043 Sum_probs=101.7
Q ss_pred ccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccc-cccCCCCCCCeEEcCCCCccc
Q 044700 515 VSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIP-AEIGNLEFLRYLNLSLLKIAE 593 (795)
Q Consensus 515 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~ 593 (795)
..|.+|++|+.+.+.++. ..+....|.. +.+|+.+.+..+ + ..++ ..+.++..|+.+.+..+. ..
T Consensus 156 ~aF~~c~~L~~i~l~~~~------~~I~~~~F~~-c~~L~~i~l~~~--~----~~I~~~~F~~~~~L~~i~~~~~~-~~ 221 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM------ETLHNGLFSG-CGKLKSIKLPRN--L----KIIRDYCFAECILLENMEFPNSL-YY 221 (394)
T ss_dssp TTTTTCTTCCEEECCTTC------CEECTTTTTT-CTTCCBCCCCTT--C----CEECTTTTTTCTTCCBCCCCTTC-CE
T ss_pred hhhcccCCCcEEecCCcc------ceeccccccC-CCCceEEEcCCC--c----eEeCchhhccccccceeecCCCc-eE
Confidence 345666667776665432 2233344555 666666666554 2 2222 335566666666655442 22
Q ss_pred cCcccCCCCcCcEEeccCCCCCCccc-hhhccCcccceeecCCcccccCcccccccccCCCcCCCCcceEEEeccCCCCC
Q 044700 594 LPEELCGLWNLQTLELNWCTNLETLP-QGMGKLINLEHLLNVGTSLASMPKEIERLTRLSAQPPEYLMRLEIRDYRGSTF 672 (795)
Q Consensus 594 lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~l~~~~~L~~L~l~~~~~~~l 672 (795)
+........+|+.+.+... ...+. ..+..+.+|+.+.+..+...--...+..+..+ ..+...... +
T Consensus 222 i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l--------~~~~~~~~~---i 288 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL--------KKVIYGSVI---V 288 (394)
T ss_dssp ECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC--------CEEEECSSE---E
T ss_pred eehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeecccccccccc--------ceeccCcee---e
Confidence 2233334455666665532 22222 23555666666666544221111112222222 333332221 2
Q ss_pred Cc-hhhhhcCccEEEEeCCCCCCCCC--CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCc
Q 044700 673 PS-WIDLLSRLTILSLKDWTNCEQLA--PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNME 749 (795)
Q Consensus 673 p~-~i~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (795)
+. .+..+.+|+.+.+.++ ...++ .|.++.+|+.+.|.+ .++.++... +.+|.+|+.+.+..
T Consensus 289 ~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a----------F~~c~~L~~i~lp~-- 352 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRS----------FRGCTSLSNINFPL-- 352 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTT----------TTTCTTCCEECCCT--
T ss_pred ccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHh----------ccCCCCCCEEEECc--
Confidence 21 2335666666666543 22222 266667777776642 244443322 23466666666643
Q ss_pred ccccccccccccccccceeeec
Q 044700 750 EWGDWECEMANVMPCLCSLSFV 771 (795)
Q Consensus 750 ~l~~~~~~~~~~~p~L~~L~l~ 771 (795)
++..+.......+++|+++.+.
T Consensus 353 ~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 353 SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECTTTBTTCTTCCEEEEE
T ss_pred cccEehHHHhhCCCCCCEEEEC
Confidence 2444444444445666666654
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=6e-06 Score=83.27 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=51.9
Q ss_pred CCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCccccCcccCCCC--cCcEEeccCCCCCCccc-------h
Q 044700 550 RTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIAELPEELCGLW--NLQTLELNWCTNLETLP-------Q 620 (795)
Q Consensus 550 ~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~~~~~lp-------~ 620 (795)
++.|+.|+|++| .+..+ ..+|..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.....+| .
T Consensus 169 l~~L~~L~Ls~N-~l~~l-~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRL-DDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTS-CCCCC-GGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCC-CCCCC-ccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 788888888888 34211 134455667888888888888887652 233333 78888888876544444 2
Q ss_pred hhccCcccceee
Q 044700 621 GMGKLINLEHLL 632 (795)
Q Consensus 621 ~i~~l~~L~~L~ 632 (795)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777765
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.83 E-value=0.00032 Score=76.87 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=99.4
Q ss_pred CceeecchhHHHHHHHHhC----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++++|.+..++.|...+.. .....+.|.++|++|+|||+||+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 5799999999999887731 0114578999999999999999999983 2 112233333321
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-------hhhH----HHHHHhhcC---CCC
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-------NSTW----ESLLQTLQE---GRP 281 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-------~~~~----~~l~~~l~~---~~~ 281 (795)
+. ....+. .......+. ......++.+|+||++.... .... ..+...+.. ...
T Consensus 204 l~----~~~~g~------~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 LV----SKWLGE------SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred HH----hhhcch------HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11 111010 111222222 22234577899999985321 1111 223333322 134
Q ss_pred CcEEEEEcCChHH-----HHhhCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC-chHHHHHh
Q 044700 282 GSKILVTTDDQSI-----ADKIGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL-PLLIKIVG 354 (795)
Q Consensus 282 gs~iivTtR~~~v-----a~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~lg 354 (795)
+..||.||..... ...+...+.+...+.++-..+|...+........ ......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666667654422 2222222778888888888888876632211111 23456788888884 44555444
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.79 E-value=5.7e-05 Score=83.50 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=79.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC------c-eeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF------D-IRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~-~~~wv~vs~~~~~~~~~~ 218 (795)
+.+|||+.+++.+...|... ...-+.++|.+|+|||++|+.+++ .+...+ + ..+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC----------
Confidence 46999999999999999875 445678999999999999999988 332211 1 12222222
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh-
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK- 297 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~- 297 (795)
....+. ....... .+...-..++.+|++|. ..+....+...+. ....++|.+|........
T Consensus 246 ---~~~~g~------~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 ---TKYRGE------FEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred ---ccccch------HHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHh
Confidence 000000 1112222 23333345678889991 1112222322222 223566666654432111
Q ss_pred ------hCCc--ccCCCCChHhHHHHHHHHh
Q 044700 298 ------IGST--ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 298 ------~~~~--~~l~~L~~~~~~~Lf~~~a 320 (795)
.... +.++..+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1111 8899999999999998654
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.79 E-value=5.5e-05 Score=76.96 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=69.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++... ..-...+.++++.-. . +.+.. .+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~-~-~~~~~---~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-E-NLLDS---ELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC-H-HHHHH---HHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC-h-hHHHH---Hhc
Confidence 4789999999988877754222345678999999999999999997422 111124556655432 2 22211 121
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEEcCC
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-----------RPGSKILVTTDD 291 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 291 (795)
+........... .....+.. ...-+|+||++..........+...+... ..+.+||.||..
T Consensus 79 g~~~~~~~g~~~--~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 79 GHEAGAFTGAQK--RHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp CCC-----------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcccccccccc--cccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 111000000000 00001111 12348999999766555555565555432 134578877765
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.76 E-value=6.3e-05 Score=78.51 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=70.5
Q ss_pred CceeecchhHHHHHHHHhCCC------C-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS------T-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+...+.... . ....+.++|.+|+||||+|+.+++ .....-...+.++++....... ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTTH-HH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccccccc-HH
Confidence 478899999888888876531 1 245899999999999999999998 3322222345666554322111 11
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcC
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQE 278 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~ 278 (795)
..++...... .......+...+.. ....+++||++..........+...+..
T Consensus 94 ---~l~g~~~~~~--~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 94 ---RLIGAPPGYV--GYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp ---HHHCCCTTST--TTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred ---HhcCCCCccc--cccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhc
Confidence 1122211100 11111222222222 3346999999976666666667666643
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00015 Score=75.02 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=94.4
Q ss_pred ecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcc-hhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 044700 150 GVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYK-VMRYFDIRIWVGASA-DSDVLSVASSIAEALGAS 227 (795)
Q Consensus 150 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 227 (795)
|-++.++.+...+..+ +...+.++|+.|+||||+|+.+++.-. ....+....+++.+. ...+.. .+++.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCC--CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc
Confidence 4456677788888776 367899999999999999999987310 111122234554432 223222 23344444322
Q ss_pred cccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-HHHHhhCC-cccCC
Q 044700 228 ASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ-SIADKIGS-TENIR 305 (795)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~-~~~l~ 305 (795)
.. .+++-++|+|++...+....+.+...+......+.+|++|.+. .+...... .++++
T Consensus 78 p~--------------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~ 137 (305)
T 2gno_A 78 PE--------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVV 137 (305)
T ss_dssp CS--------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cc--------------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCC
Confidence 11 2456799999997777778888888887666777877776544 23222222 48889
Q ss_pred CCChHhHHHHHHHHh
Q 044700 306 RASDEASWSLFESAA 320 (795)
Q Consensus 306 ~L~~~~~~~Lf~~~a 320 (795)
+++.++..+.+.+..
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887765
No 210
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.72 E-value=8.7e-05 Score=77.00 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCc-chhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSY-KVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++.. +... ..+.++++.-. ..++. ..+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---~~v~v~~~~~~--~~l~~---~~l 73 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDR---PLVTLNCAALN--ESLLE---SEL 73 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSS---CCCEEECSSCC--HHHHH---HHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCC---CeEEEeCCCCC--hHHHH---HHh
Confidence 468999999999988886633344567899999999999999998732 1111 23445555332 22222 222
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh-
Q 044700 225 GASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVTTDDQ- 292 (795)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~- 292 (795)
.+........... .....+... ..-.|+||++..........+...+.... ...+||.||...
T Consensus 74 fg~~~g~~tg~~~--~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 74 FGHEKGAFTGADK--RREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp TCCCSSCCC---C--CCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred cCccccccCchhh--hhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 2221100000000 000111111 12368999997766555566666554431 346777777543
Q ss_pred -----------HHHHhhCCc-ccCCCCC--hHhHHHHHH
Q 044700 293 -----------SIADKIGST-ENIRRAS--DEASWSLFE 317 (795)
Q Consensus 293 -----------~va~~~~~~-~~l~~L~--~~~~~~Lf~ 317 (795)
++...+... +.+++|. .+|...|+.
T Consensus 149 ~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 149 AEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHH
Confidence 111222222 6678887 455554444
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=4.6e-05 Score=91.03 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=80.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-----C-c-eeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-----F-D-IRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F-~-~~~wv~vs~~~~~~~~~~ 218 (795)
+.++||++++.++.+.|... ...-+.++|.+|+||||+|+.+++. +... . + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-----------
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc------
Confidence 56999999999999999875 4455789999999999999999983 3111 1 1 234443322100
Q ss_pred HHHHHhcCCcccCCCCCCChHHHH-HHHHHhcC-CCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCCcEEEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYL-RYIRKSIA-RNRFILVIDDVWIED--------NSTWESLLQTLQEGRPGSKILVT 288 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~-~~~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivT 288 (795)
+.. .....+... ..+...-. +++.+|++|++..-. ......+...+.. .+..+|.+
T Consensus 240 -------g~~-----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~a 305 (854)
T 1qvr_A 240 -------GAK-----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEE
T ss_pred -------cCc-----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEe
Confidence 000 111122222 22222222 367899999985321 1111223333332 23445655
Q ss_pred cCChHHHH-----hhCCc---ccCCCCChHhHHHHHHHH
Q 044700 289 TDDQSIAD-----KIGST---ENIRRASDEASWSLFESA 319 (795)
Q Consensus 289 tR~~~va~-----~~~~~---~~l~~L~~~~~~~Lf~~~ 319 (795)
|....... .+... +.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 54443211 11111 788999999999998754
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.70 E-value=0.00046 Score=71.47 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=88.8
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.+++|.+..+++|.+++... -...+.|.|+|++|+|||+||+.+++ ..... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE----hH
Confidence 57999999999888877531 12457899999999999999999998 33222 22222 22
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC--------------hhhHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED--------------NSTWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~--------------~~~~~~l~~~l~~-- 278 (795)
++.. ...+.. ...+...+.......+.+|++|++..-. ......+...+..
T Consensus 84 ~l~~----~~~g~~---------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 84 ELLT----MWFGES---------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHH----HHHTTC---------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHh----hhcCch---------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 2222 221111 1123333444445678999999984210 0113344444432
Q ss_pred CCCCcEEEEEcCChHHH-Hh-hC--C---cccCCCCChHhHHHHHHHHh
Q 044700 279 GRPGSKILVTTDDQSIA-DK-IG--S---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va-~~-~~--~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
...+..||.||...... .. .. . .+.++..+.++-.+++....
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 23455677777655322 11 11 1 17888889988888887665
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=0.00046 Score=76.01 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=58.3
Q ss_pred EEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EE---------cC----ChH----HHHhhCCcccCCCCChHhHHHHH
Q 044700 255 ILVIDDVWIEDNSTWESLLQTLQEGRPGSKIL-VT---------TD----DQS----IADKIGSTENIRRASDEASWSLF 316 (795)
Q Consensus 255 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tR----~~~----va~~~~~~~~l~~L~~~~~~~Lf 316 (795)
++++|++...+.+..+.+...+...... -+| .| |. ... +...+.. +.+.+++.++..+++
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQII 375 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcce-eeCCCCCHHHHHHHH
Confidence 8999999777777888888877655444 344 44 32 111 1111111 799999999999999
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHHHc-CCCchHHHHH
Q 044700 317 ESAAFFNRSQEVREHLEHIGRKIVQQC-HDLPLLIKIV 353 (795)
Q Consensus 317 ~~~a~~~~~~~~~~~~~~~~~~i~~~c-~G~PLai~~l 353 (795)
...+-..+.. --.+....|++.+ .|.|..+..+
T Consensus 376 ~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHH
Confidence 8876321111 1134566777777 7888655444
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.56 E-value=0.0016 Score=70.24 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=51.5
Q ss_pred hhhhcCccEEEEeCCCCCCCCCCCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccccc
Q 044700 676 IDLLSRLTILSLKDWTNCEQLAPLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWE 755 (795)
Q Consensus 676 i~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 755 (795)
+..+.+|+.+.+.++...-.-..+.++++|+.+.+. ..++.++... +.++.+|+.+.+.+ .++.+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a----------F~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESV----------FAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTT----------TTTCTTCCEEECCT--TCCEEC
T ss_pred eeecccccEEecccccceecCcccccccccccccCC--CcccccCcee----------ecCCCCcCEEEeCC--cccEeh
Confidence 345677777777554322122237778888888875 3445554332 34688999999865 355555
Q ss_pred ccccccccccceeeec
Q 044700 756 CEMANVMPCLCSLSFV 771 (795)
Q Consensus 756 ~~~~~~~p~L~~L~l~ 771 (795)
...+..+.+|+++.|-
T Consensus 327 ~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTTTCTTCCEEEEC
T ss_pred HhHhhCCCCCCEEEEC
Confidence 5555567888888874
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.00037 Score=70.41 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=80.9
Q ss_pred CceeecchhHHHHHHHHh---CCC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
++++|.+..++++...+. ... ...+-|.|+|++|+||||||+.+++ .....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCCE---EEEeHHHHHH---
Confidence 579999988777765542 210 1234688999999999999999998 332222 3333221100
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC----------Ch----hhHHHHHHhhcC--C
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE----------DN----STWESLLQTLQE--G 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~----------~~----~~~~~l~~~l~~--~ 279 (795)
.. .......+...+.......+.++++|++... .. .....+...+.. .
T Consensus 84 -----------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 -----------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -----------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -----------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 00 1112223333444444556789999997210 00 122233333332 2
Q ss_pred CCCcEEEEEcCChH-HHHhh-C-----CcccCCCCChHhHHHHHHHHh
Q 044700 280 RPGSKILVTTDDQS-IADKI-G-----STENIRRASDEASWSLFESAA 320 (795)
Q Consensus 280 ~~gs~iivTtR~~~-va~~~-~-----~~~~l~~L~~~~~~~Lf~~~a 320 (795)
..+..||.||...+ +.... . ..+.++..+.++-.+++....
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 33456666665543 21111 1 116677777777777776654
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=2.4e-05 Score=78.83 Aligned_cols=43 Identities=23% Similarity=0.122 Sum_probs=27.0
Q ss_pred CCCCcCcEEeccCCCCCC--ccchhhccCcccceeecCCcccccC
Q 044700 599 CGLWNLQTLELNWCTNLE--TLPQGMGKLINLEHLLNVGTSLASM 641 (795)
Q Consensus 599 ~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~l 641 (795)
.++++|++|+|++|.... .+|..+..+++|++|+|++|.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 356677777777764333 3345556777777777777766554
No 217
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.0036 Score=67.09 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=56.2
Q ss_pred cceeEEEEEeeCCCCC-CccccccCcceEEeeccCCCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccC
Q 044700 498 VKLSHLFLRVSEGISF-PVSVSEVQNLRSLRIQYGSKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIG 576 (795)
Q Consensus 498 ~~l~~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~ 576 (795)
.+++.+.+.. ++..+ ..+|.+|.+|+++.+..+ +..+....|.. + .|..+.+..+ + ..+.....
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~------v~~Ig~~aF~~-c-~l~~i~~~~~--l----~~I~~~aF 110 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST------VTSIGDGAFAD-T-KLQSYTGMER--V----KKFGDYVF 110 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT------CCEECTTTTTT-C-CCCEEEECTT--C----CEECTTTT
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc------ceEechhhhcC-C-CCceEECCce--e----eEecccee
Confidence 3455555432 22223 345667777777777543 23334445555 4 4555554432 2 33333322
Q ss_pred CCCCCCeEEcCCCCccccCcccCCCCcCcEEeccCCCCCCcc-chhhccCcccceeecCC
Q 044700 577 NLEFLRYLNLSLLKIAELPEELCGLWNLQTLELNWCTNLETL-PQGMGKLINLEHLLNVG 635 (795)
Q Consensus 577 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~ 635 (795)
...+|+.+.+..+ +..+......-.+|....+..+ +..+ ...+..+.+|..+.+..
T Consensus 111 ~~~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 111 QGTDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTCCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred ccCCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 2346777777654 3334332222235555555432 2222 22345555666555443
No 218
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=2.4e-05 Score=73.03 Aligned_cols=68 Identities=24% Similarity=0.230 Sum_probs=41.6
Q ss_pred hhhcCccEEEEeCCCCCC--CCCCCCCC----CccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCcc
Q 044700 677 DLLSRLTILSLKDWTNCE--QLAPLGNL----PSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEE 750 (795)
Q Consensus 677 ~~l~~L~~L~L~~~~~~~--~l~~l~~l----~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 750 (795)
..+++|++|+|++|...+ .+..++.+ ++|++|+|++|..+++.|-... ..+++|++|++++|+.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----------~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----------HHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG----------GGCTTCCEEEEESCTT
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH----------hcCCCCCEEECCCCCC
Confidence 356667777777775332 22223332 4677777777777766543322 2577888888888877
Q ss_pred cccc
Q 044700 751 WGDW 754 (795)
Q Consensus 751 l~~~ 754 (795)
+++.
T Consensus 152 Itd~ 155 (176)
T 3e4g_A 152 VKEK 155 (176)
T ss_dssp CCCH
T ss_pred CCch
Confidence 7654
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=0.00056 Score=80.72 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=86.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchh----ccCceeEEE-EeCCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVM----RYFDIRIWV-GASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv-~vs~~~~~~~~~~~i 220 (795)
+.++||+.++.++.+.|... ...-+.|+|.+|+||||+|+.+++...-. ..+...+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 57999999999999999876 45667899999999999999998732100 112333332 11110
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHH-hcCCCeEEEEEeCCCCC--------ChhhHHHHHHhhcCCCCCcEEEEEcCC
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRK-SIARNRFILVIDDVWIE--------DNSTWESLLQTLQEGRPGSKILVTTDD 291 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~ 291 (795)
+.... .....+.....+.. ....++.+|++|++..- ...+...+...+.. ..+.++|.+|..
T Consensus 254 ---~~~~~-----~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 ---LAGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp ----CCCC-----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred ---hcccc-----ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 00000 11223333333333 33446789999998533 11111122222222 234566666654
Q ss_pred hHHHHhh------CC---cccCCCCChHhHHHHHHHHh
Q 044700 292 QSIADKI------GS---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 292 ~~va~~~------~~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
....... .. .+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 11 17899999999998887654
No 220
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00038 Score=73.79 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=95.1
Q ss_pred CceeecchhHHHHHHHHhC-----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS-----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+++++ +....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 5788999988888776542 111457788999999999999999998 444333 3333332111
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC--------h--h----hHHHHHHhhcCC-
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED--------N--S----TWESLLQTLQEG- 279 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~--------~--~----~~~~l~~~l~~~- 279 (795)
.. .......+...+...-...+++|++|++..-. . . ....+...+...
T Consensus 221 ------------k~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ------------KY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ------------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ------------cc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 00 11111222222333334678999999984210 0 0 122333333322
Q ss_pred -CCCcEEEEEcCChHHH---Hh----hCCcccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 280 -RPGSKILVTTDDQSIA---DK----IGSTENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 280 -~~gs~iivTtR~~~va---~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
..+..||.||-..+.. -. +...++++..+.++-.++|..+.-.-.. ...-+ ...|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 3444566666544331 11 1122888888888888888766522111 11112 346677777653
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.47 E-value=0.0004 Score=72.26 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=37.7
Q ss_pred CceeecchhHHHHHHHHhCC------------CCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSS------------STEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57999999999998887640 11345788999999999999999998
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00042 Score=74.54 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=37.5
Q ss_pred CceeecchhHHHHHHHHhC-----------CCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLS-----------SSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5788999999888876642 111467799999999999999999998
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.45 E-value=0.00029 Score=83.02 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=80.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhcc-----CceeEEEEeCCCCCHHHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRY-----FDIRIWVGASADSDVLSVASSI 220 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i 220 (795)
+.+|||+++++++...|... ...-+.++|.+|+|||++|+.+++. +... ....-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc-----------
Confidence 47999999999999999875 4456789999999999999999873 2111 01111222111
Q ss_pred HHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHh--h
Q 044700 221 AEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIADK--I 298 (795)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~--~ 298 (795)
+... ...-...+...+......++.+|++|.- . .....+...+. ....++|.||........ .
T Consensus 245 ----g~~~-----~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----GTKY-----RGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----cccc-----cchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000 0001112223333333467789999921 1 12222222222 234566666654442111 0
Q ss_pred C-----C--cccCCCCChHhHHHHHHHHh
Q 044700 299 G-----S--TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 299 ~-----~--~~~l~~L~~~~~~~Lf~~~a 320 (795)
. . .+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 18899999999999998654
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=0.00027 Score=83.32 Aligned_cols=150 Identities=16% Similarity=0.212 Sum_probs=88.4
Q ss_pred CceeecchhHHHHHHHHhCCCC-------CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSST-------EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+...+..... ....+.++|++|+|||++|+.+++ .....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhcccc-----
Confidence 4789999999888888864321 233799999999999999999998 33222234456665432110
Q ss_pred HHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEE
Q 044700 219 SIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEG-----------RPGSKILV 287 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiv 287 (795)
.......+...++. ....+|+||++..........+...+..+ ....+||+
T Consensus 564 ---------------~~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 564 ---------------HSTSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ---------------CCCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ---------------cccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 00001111122222 23348999999776666677777666542 13457888
Q ss_pred EcCC-----hH------------HHHhhCCcccCCCCChHhHHHHHHHHh
Q 044700 288 TTDD-----QS------------IADKIGSTENIRRASDEASWSLFESAA 320 (795)
Q Consensus 288 TtR~-----~~------------va~~~~~~~~l~~L~~~~~~~Lf~~~a 320 (795)
||.. .. +...+...+.+.+++.++-.+++....
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8862 11 111121227788888888877776543
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00076 Score=72.66 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=95.6
Q ss_pred CceeecchhHHHHHHHHhC---C--------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---S--------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.- . -...+-|.++|++|.|||+||+++++ +....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 5788999988888776642 1 11467899999999999999999998 443333 3333332111
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Ch---hhHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DN---STWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~---~~~~~l~~~l~~-- 278 (795)
.. .......+...+...-...+++|++|++..- +. .....+...+..
T Consensus 254 ------------k~-----~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ------------KY-----IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ------------SS-----SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ------------cc-----chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00 0111112222223333467899999998421 00 112234444432
Q ss_pred CCCCcEEEEEcCChHHHHh--hCC--c---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 279 GRPGSKILVTTDDQSIADK--IGS--T---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~--~~~--~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
...+..||.||-..+..+. ... . ++++..+.++-.++|..+.-.-. ....-+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhCCCCC
Confidence 2345567777765543221 111 2 78887788888888876653211 111112 245666776653
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.00036 Score=77.06 Aligned_cols=179 Identities=12% Similarity=0.145 Sum_probs=98.9
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.+++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+.+++ +.... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEch------
Confidence 46899999999998887532 22456789999999999999999987 33222 2333321
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC--------CC---hhhHHHHHHhhcC--CCC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWI--------ED---NSTWESLLQTLQE--GRP 281 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~--------~~---~~~~~~l~~~l~~--~~~ 281 (795)
++ ...+ ...........+.....+++.+|+||++.. .. ......+...+.. ...
T Consensus 273 ~l----~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 EI----MSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp HH----HTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred Hh----hhhh---------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 11 1000 111112233344444456788999999821 01 0122334443332 223
Q ss_pred CcEEEEEcCChH-HHHhhCC------cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC-chHHHHH
Q 044700 282 GSKILVTTDDQS-IADKIGS------TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL-PLLIKIV 353 (795)
Q Consensus 282 gs~iivTtR~~~-va~~~~~------~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~l 353 (795)
+.+||.||.... +...... .+.+...+.++-.+++...+..... ..... ...+++.+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 455665665442 2222211 1788899999999999877632111 11112 24556666664 4444444
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00053 Score=73.66 Aligned_cols=172 Identities=19% Similarity=0.162 Sum_probs=93.7
Q ss_pred CceeecchhHHHHHHHHhC-----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS-----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+++++ +....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4788999998888776431 112568899999999999999999998 444333 3333221110
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC--------h------hhHHHHHHhhcCC-
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED--------N------STWESLLQTLQEG- 279 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~--------~------~~~~~l~~~l~~~- 279 (795)
.. .......+...+...-...+++|++|++.... . .....+...+...
T Consensus 282 ------------k~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 282 ------------KY-----VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ------------CS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ------------cc-----CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 00 01111122223333335678999999984210 0 0112233333322
Q ss_pred -CCCcEEEEEcCChHHHH--hh--CC---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC
Q 044700 280 -RPGSKILVTTDDQSIAD--KI--GS---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL 346 (795)
Q Consensus 280 -~~gs~iivTtR~~~va~--~~--~~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~ 346 (795)
..+..||.||-..+... .. +. .++++..+.++-.++|+.+.-.-. ....-+ ...|++.+.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCC
Confidence 23445566665443211 11 11 288888888888888876652211 111112 34567777775
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00027 Score=74.47 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=86.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
..++|++..++.+...+... .-+.++|.+|+|||+||+.+++ .....| ..+.++......++.... .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~----~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTM----I 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEE----E
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCce----e
Confidence 57899999999998888765 3688999999999999999987 333222 334444333333322110 0
Q ss_pred CCcccCCCCCCChHHHHHHHHHhcCC--CeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEEcCCh
Q 044700 226 ASASAFSSQGQELEPYLRYIRKSIAR--NRFILVIDDVWIEDNSTWESLLQTLQEG-----------RPGSKILVTTDDQ 292 (795)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 292 (795)
... ..... ....+ ...++++|++..........+...+... .....|+.|+...
T Consensus 94 ~~~-----~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 YNQ-----HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EET-----TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ecC-----CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 000 00000 00001 1258999999766655555555554422 2334555555422
Q ss_pred ----------HHHHhhCCcccCCCCChHhHHHHHHHHh
Q 044700 293 ----------SIADKIGSTENIRRASDEASWSLFESAA 320 (795)
Q Consensus 293 ----------~va~~~~~~~~l~~L~~~~~~~Lf~~~a 320 (795)
.+...+...+.++..+.++-.+++.+.+
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 2222222227888889888888887765
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.31 E-value=0.0013 Score=64.43 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCc--------ccCCCCCCChH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASA--------SAFSSQGQELE 239 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~ 239 (795)
...++.|+|.+|+||||||..++. . .-..++|++....++...+.+ +.+.++... ...........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 557999999999999999999987 1 224688888777666655443 333322110 00000112223
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCC
Q 044700 240 PYLRYIRKSIARNRFILVIDDVW 262 (795)
Q Consensus 240 ~~~~~l~~~l~~~~~LlVlDdvw 262 (795)
+....++..+..+.-+||+|.+-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34555555554457899999874
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=0.00016 Score=66.19 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
....++|+|..|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999983
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00062 Score=73.30 Aligned_cols=171 Identities=17% Similarity=0.183 Sum_probs=92.5
Q ss_pred CceeecchhHHHHHHHHhC----CC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----SS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.. ++ ...+-|.++|++|.|||.||+++++ +....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh--
Confidence 5789999999988876432 11 1467899999999999999999998 443333 3333221110
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHH-HHHHHhcCCCeEEEEEeCCCC------C-Ch---h----hHHHHHHhhcCC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYL-RYIRKSIARNRFILVIDDVWI------E-DN---S----TWESLLQTLQEG 279 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdvw~------~-~~---~----~~~~l~~~l~~~ 279 (795)
. .....+... ..+...-...+++|++|++.. . .. . ....+...+...
T Consensus 254 ------------~------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 254 ------------M------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp ------------S------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ------------c------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 0 011111112 222222235689999999721 0 00 0 112233333322
Q ss_pred --CCCcEEEEEcCChHHHHh-h-C--Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC
Q 044700 280 --RPGSKILVTTDDQSIADK-I-G--ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL 346 (795)
Q Consensus 280 --~~gs~iivTtR~~~va~~-~-~--~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~ 346 (795)
..+..||.||-..+.... + . .. ++++..+.++-.++|..+.-.-. ....-+ ...|++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 234456667765543221 1 1 11 78888888888888876552211 111112 34566777764
No 232
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.29 E-value=0.00078 Score=73.76 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=94.7
Q ss_pred CceeecchhHHHHHHHHhC---C-------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---S-------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.++.++++.+.+.. . ....+-|.|+|++|+||||||+.+++ +....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH--
Confidence 5799999887777665432 1 01234588999999999999999998 333222 33333321110
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCCh--------------hhHHHHHHhhcC--C
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDN--------------STWESLLQTLQE--G 279 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~ 279 (795)
+ ...........+.....+.+.+|+||++..-.. .....+...+.. .
T Consensus 89 --------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 --------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp --------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred --------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 000112233344445556789999999833110 123334433322 1
Q ss_pred CCCcEEEEEcCChHHHH-h-hC--C---cccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 280 RPGSKILVTTDDQSIAD-K-IG--S---TENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 280 ~~gs~iivTtR~~~va~-~-~~--~---~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
..+..||.||...+... . .. . .+.++..+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 24556777776654322 1 11 1 177788887777788876653211 111111 334677777776
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.19 E-value=8.7e-05 Score=75.61 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=35.7
Q ss_pred CceeecchhHHHHHHHHhC----------CCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLS----------SSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|.+..++.+.+.+.. .....+-+.|+|++|+|||+||+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 5799999888888876641 001234477999999999999999998
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0022 Score=68.19 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=92.2
Q ss_pred CceeecchhHHHHHHHHhC---CC--------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS---SS--------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~---~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.- .. ...+-|.++|++|.|||.||+++++ +....| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhh---
Confidence 5788999988888776532 11 1467899999999999999999998 443333 223322110
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-----------Ch---hhHHHHHHhhcC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-----------DN---STWESLLQTLQE-- 278 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-----------~~---~~~~~l~~~l~~-- 278 (795)
... .......+...+...-...+++|++|++... +. .....+...+..
T Consensus 254 -----------sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 -----------QKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------CSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------hcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 000 0111111222222333457899999987321 00 112223333322
Q ss_pred CCCCcEEEEEcCChHHHHh-h-C--Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCC
Q 044700 279 GRPGSKILVTTDDQSIADK-I-G--ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDL 346 (795)
Q Consensus 279 ~~~gs~iivTtR~~~va~~-~-~--~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~ 346 (795)
...+..||.||-..+..+. + . .. ++++..+.++-.++|..+.-.- .....-+ ...|++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCC----HHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCC
Confidence 2344556666655543321 1 1 11 7788778888888887665221 1111112 34566667665
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.13 E-value=0.00031 Score=72.88 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhCCCC-CCcEEEEEcCCCChHHHHHHHHhcCcchh-ccCceeEEEEe
Q 044700 153 EEKEDLVSKLLSSST-EIPIISILGTEGTGKTTLATLAYNSYKVM-RYFDIRIWVGA 207 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v 207 (795)
..++.+.+++..... ....+.|+|.+|+|||+||+.+++ ... ..-..++++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 344555666665322 257899999999999999999998 333 22234556654
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.05 E-value=0.015 Score=62.12 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=36.9
Q ss_pred hhcCccEEEEeCCCCCCCCC--CCCCCCccCeeecccccCceeeCccccCCCCCCCccCCCCCCcceeeecCCccccccc
Q 044700 678 LLSRLTILSLKDWTNCEQLA--PLGNLPSLESLSLFSMGSVRKVGNEFLGIKSGIASSVTYFPRLKSLKFVNMEEWGDWE 755 (795)
Q Consensus 678 ~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 755 (795)
.+.+|+.+.+..+ ...++ .+.++++|+.+.+.+ ..++.++.. .+.++.+|+.+.|.+ .++.+.
T Consensus 261 ~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~----------aF~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 261 NCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR----------VFMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp TCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTT----------TTTTCTTCCEEECCT--TCCEEC
T ss_pred eeehhcccccccc--ceeccccccccccccccccccc-cccceehhh----------hhcCCCCCCEEEcCc--cccEEH
Confidence 4455555555432 11111 255666666666643 223333322 123566677776643 244444
Q ss_pred ccccccccccceeee
Q 044700 756 CEMANVMPCLCSLSF 770 (795)
Q Consensus 756 ~~~~~~~p~L~~L~l 770 (795)
...+..+.+|+++.+
T Consensus 326 ~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCCCEEEE
Confidence 333444555555554
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.95 E-value=0.002 Score=76.75 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=73.5
Q ss_pred ceeecchhHHHHHHHHhCCC------C-CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHH
Q 044700 147 ETCGVDEEKEDLVSKLLSSS------T-EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASS 219 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 219 (795)
.++|.+..++.+...+.... . ....+.|+|..|+|||++|+.+++. ....-...+.++++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 58999999998888775421 1 2358999999999999999999873 21111233455554322210 0
Q ss_pred HHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEE
Q 044700 220 IAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSKILVT 288 (795)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 288 (795)
...+.+..+.. ........+...++. ...-+|+||++..........+...+..+. .+..||+|
T Consensus 633 -~s~l~g~~~~~-~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 -VSRLIGAPPGY-VGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp -GGGC---------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred -HHHHcCCCCCC-cCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 00010000000 000001122222222 234689999997766667777777776441 24457777
Q ss_pred cCC
Q 044700 289 TDD 291 (795)
Q Consensus 289 tR~ 291 (795)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 238
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.0024 Score=68.42 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.1
Q ss_pred CceeecchhHHHHHHHHh----C------------------------CCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLL----S------------------------SSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~----~------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.+..++.|...+. . .......|.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 468999999988887772 0 011345688999999999999999998
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.0026 Score=73.85 Aligned_cols=173 Identities=13% Similarity=0.148 Sum_probs=94.2
Q ss_pred CceeecchhHHHHHHHHhC----CC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS----SS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
+++.|.++.+++|.+.+.- .+ ...+-|.++|++|.|||+||+++++. ...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 5688999988888876532 11 14678999999999999999999994 33332 3443221
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-------hhh----HHHHHHhhcCC--CC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-------NST----WESLLQTLQEG--RP 281 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-------~~~----~~~l~~~l~~~--~~ 281 (795)
+ . ... .......+...+.......+.+|++|++..-. .+. ...+...+... ..
T Consensus 274 -l----~----sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 -I----M----SKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -H----H----SSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -h----h----ccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 1 0 100 11112233334444456678999999973210 011 12222222221 23
Q ss_pred CcEEEEEcCChH-HHHhhC---Cc---ccCCCCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCc
Q 044700 282 GSKILVTTDDQS-IADKIG---ST---ENIRRASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLP 347 (795)
Q Consensus 282 gs~iivTtR~~~-va~~~~---~~---~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~P 347 (795)
+.-||.||...+ +-..+. .. +++...+.++-.++|..+.-.. .....-+ ...|++++.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~-~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS-EECTTCC----HHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC-CCCcccC----HHHHHHhcCCCC
Confidence 344555665443 222221 11 7888888888888887654211 1111112 346777777764
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.90 E-value=0.0011 Score=78.05 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=72.9
Q ss_pred CceeecchhHHHHHHHHhCCC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVAS 218 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 218 (795)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++ ... ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh---
Confidence 468999999988888775321 1334799999999999999999998 332 2334555543221100
Q ss_pred HHHHHhcCCcccCCCCCCC---hHHHHHHHHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcE
Q 044700 219 SIAEALGASASAFSSQGQE---LEPYLRYIRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGR-----------PGSK 284 (795)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ 284 (795)
+.+.++.. + .... ...+...++ .....+|+||++........+.+...+..+. ....
T Consensus 530 -~~~l~g~~-~----g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 530 -VSRLIGAP-P----GYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp -CSSSCCCC-S----CSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred -HhhhcCCC-C----CCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 00000000 0 0000 011222222 2346799999997766666777777665331 2345
Q ss_pred EEEEcCC
Q 044700 285 ILVTTDD 291 (795)
Q Consensus 285 iivTtR~ 291 (795)
||.||..
T Consensus 601 iI~tsN~ 607 (758)
T 1r6b_X 601 LVMTTNA 607 (758)
T ss_dssp EEEEECS
T ss_pred EEEecCc
Confidence 7777643
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.013 Score=59.42 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=78.9
Q ss_pred CceeecchhHHHHHHHHhCC-----------CCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSS-----------STEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.++.+++|...+... -...+-+.++|++|+||||||+.++.. ... ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh-
Confidence 57889888888887654210 011233999999999999999999983 221 2344432221100
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHh-cCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCCC--
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKS-IARNRFILVIDDVWIED-----------NSTWESLLQTLQEGR-- 280 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~~-- 280 (795)
.....+.....+.+. ....+.++++|++.... ......+...+..+.
T Consensus 84 -------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 -------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred -------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 000001111222222 13457899999984311 011233333343322
Q ss_pred CCcEEEEEcCChHHHHhh--C--C---cccCCCCChHhHHHHHHHHh
Q 044700 281 PGSKILVTTDDQSIADKI--G--S---TENIRRASDEASWSLFESAA 320 (795)
Q Consensus 281 ~gs~iivTtR~~~va~~~--~--~---~~~l~~L~~~~~~~Lf~~~a 320 (795)
...-++.+|...++.... . . .+.++..+.++-.++|....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 234455566666543221 1 1 17788888888888887654
No 242
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.78 E-value=0.0027 Score=67.17 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=33.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++++|.+..+..+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHH
Confidence 57999988776655555433 223488999999999999999987
No 243
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.74 E-value=0.0027 Score=65.30 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999998
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.73 E-value=0.0076 Score=66.35 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=80.1
Q ss_pred CceeecchhHHHHHHHHh---CCC-------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHH
Q 044700 146 SETCGVDEEKEDLVSKLL---SSS-------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLS 215 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 215 (795)
.+++|.++.+.++.+... ... .-.+-|.|+|++|+||||||+.+++. ... ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH---
Confidence 679999987777666543 211 01234899999999999999999983 322 233444321100
Q ss_pred HHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcC----CCeEEEEEeCCCCCC----------hhh----HHHHHHhhc
Q 044700 216 VASSIAEALGASASAFSSQGQELEPYLRYIRKSIA----RNRFILVIDDVWIED----------NST----WESLLQTLQ 277 (795)
Q Consensus 216 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdvw~~~----------~~~----~~~l~~~l~ 277 (795)
.........+...++ ..+.++++|++..-. ... ...+...+.
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 001111222333332 235799999983210 112 233443343
Q ss_pred CCC--CCcEEEEEcCChHHHHh-h-C-----CcccCCCCChHhHHHHHHHHh
Q 044700 278 EGR--PGSKILVTTDDQSIADK-I-G-----STENIRRASDEASWSLFESAA 320 (795)
Q Consensus 278 ~~~--~gs~iivTtR~~~va~~-~-~-----~~~~l~~L~~~~~~~Lf~~~a 320 (795)
.+. .+..++.||...++... . . ..+.+...+.++-.+++..++
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 322 33455666666654321 1 1 116788888888888887654
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.70 E-value=0.0021 Score=72.28 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=35.5
Q ss_pred CceeecchhHHHHHHHHhC----CCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLS----SSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|.++....+.+.+.- ......++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4688988887777654431 111567999999999999999999998
No 246
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.64 E-value=0.0013 Score=67.39 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEe--CCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGA--SADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 245 (795)
..+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. ...+.++....+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i 176 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDI 176 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHH
Confidence 4467889999999999999999873 1124567777 332110 113455666666
Q ss_pred HHhcCCCeEEEEEeCCC
Q 044700 246 RKSIARNRFILVIDDVW 262 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdvw 262 (795)
.+.+...+ +||+|++.
T Consensus 177 ~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 177 ARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHHHCS-EEEEECCT
T ss_pred HHHHhhCC-EEEEeccc
Confidence 66666556 99999984
No 247
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.0015 Score=63.79 Aligned_cols=116 Identities=19% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
...++.|+|..|+||||++..+.++ ...+-..++.+...... + -...|+..++...... ......++...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~--~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSV--EVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCE--EESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcccc--ccCCHHHHHHHHHH
Confidence 4578999999999999999888873 33332234444433221 1 1123344443322111 12334566666666
Q ss_pred hcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH
Q 044700 248 SIARNRF-ILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS 293 (795)
Q Consensus 248 ~l~~~~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (795)
.+.+.++ +||+|.+..-..+..+.+. .+.+ .|..||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 5555444 9999998554434444443 3333 2778999987543
No 248
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.56 E-value=0.0034 Score=63.08 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhCCC----------CCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSS----------TEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
++++|.++.+.++.+....-. .-.+-+.|+|.+|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 578898877666655432110 01233899999999999999999983
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.53 E-value=0.0051 Score=64.53 Aligned_cols=88 Identities=26% Similarity=0.305 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
...++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++...... .....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 5679999999999999999999873 22222357899887777754 455555442211 013455666666666
Q ss_pred HhcC-CCeEEEEEeCCC
Q 044700 247 KSIA-RNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdvw 262 (795)
..+. .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5553 455689999873
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.50 E-value=0.0076 Score=70.99 Aligned_cols=151 Identities=14% Similarity=0.178 Sum_probs=83.8
Q ss_pred CceeecchhHHHHHHHHhC-----------CCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLS-----------SSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.+++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+++. ....| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 5799999999999888753 1114567999999999999999999983 32222 333321
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCCC-------h----hhHHHHHHhhcCC--CC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDVWIED-------N----STWESLLQTLQEG--RP 281 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~~-------~----~~~~~l~~~l~~~--~~ 281 (795)
.+.... .......+...+.......+.++++|++.... . .....+...+... ..
T Consensus 273 --------~l~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 273 --------EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp --------HHSSSS-----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred --------Hhhhhh-----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 111100 01111122233333334567899999983210 0 0112233333222 23
Q ss_pred CcEEEEEcCChH-HHHhhCC---c---ccCCCCChHhHHHHHHHHh
Q 044700 282 GSKILVTTDDQS-IADKIGS---T---ENIRRASDEASWSLFESAA 320 (795)
Q Consensus 282 gs~iivTtR~~~-va~~~~~---~---~~l~~L~~~~~~~Lf~~~a 320 (795)
+..+|.||.... +...... . +.+...+.++-.+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 445555665442 2111111 1 6778888888888887654
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0078 Score=61.28 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=57.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhcc--CceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHH-HHHH
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRY--FDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPY-LRYI 245 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~-~~~l 245 (795)
.++-|+|.+|+||||||.+++.. .... =..++||+....++.. .+++++....... ....+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 38999999999999999988873 3333 2468999988888764 2666765432210 123455665 4443
Q ss_pred HHh---cCCCeEEEEEeCCC
Q 044700 246 RKS---IARNRFILVIDDVW 262 (795)
Q Consensus 246 ~~~---l~~~~~LlVlDdvw 262 (795)
... -+++.-+||+|-|-
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHTCCTTCCEEEEEECST
T ss_pred HHHHHhhccCceEEEEeccc
Confidence 332 34577899999983
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.28 E-value=0.0078 Score=66.33 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=37.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 57899999999988888775 47889999999999999999984
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.28 E-value=0.01 Score=62.58 Aligned_cols=87 Identities=26% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-CCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAF-SSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 246 (795)
...++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++...... .....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 55799999999999999999988732 2222468999988877654 244454432110 012345677777776
Q ss_pred HhcCC-CeEEEEEeCC
Q 044700 247 KSIAR-NRFILVIDDV 261 (795)
Q Consensus 247 ~~l~~-~~~LlVlDdv 261 (795)
..... ..-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 66543 4559999987
No 254
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.24 E-value=0.096 Score=54.93 Aligned_cols=163 Identities=9% Similarity=-0.039 Sum_probs=100.7
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCC
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQE 237 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 237 (795)
+.+.|... -..+..++|..|.||++.|+.+.+... ...|+....+.+....+++++.
T Consensus 9 l~~~l~~~--~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~-------------------- 65 (343)
T 1jr3_D 9 LRAQLNEG--LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIF-------------------- 65 (343)
T ss_dssp HHHHHHHC--CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHH--------------------
T ss_pred HHHHHhcC--CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHH--------------------
Confidence 44444422 567999999999999999999887321 2234322222233333333332
Q ss_pred hHHHHHHHHH-hcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCC-------hHHHHhhCCc---ccCC
Q 044700 238 LEPYLRYIRK-SIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDD-------QSIADKIGST---ENIR 305 (795)
Q Consensus 238 ~~~~~~~l~~-~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~va~~~~~~---~~l~ 305 (795)
+.+.. -+-+++-++|+|++.. .+...++.+...+..-..++.+|++|.. ..+....... ++..
T Consensus 66 -----~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 66 -----SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp -----HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred -----HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 22221 1235567888999865 4556788888888765667777766532 2344443332 8888
Q ss_pred CCChHhHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHcCCCchHHHH
Q 044700 306 RASDEASWSLFESAAFFNRSQEVREHLEHIGRKIVQQCHDLPLLIKI 352 (795)
Q Consensus 306 ~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 352 (795)
+++.++....+.+.+-..+-.- ..+.+..+++.++|.+.++..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLEL----DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEE----CHHHHHHHHHSSTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhchHHHHHHH
Confidence 9999998888877664332211 135677888889998876654
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.17 E-value=0.014 Score=57.39 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC---------------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS--------------- 232 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~--------------- 232 (795)
...+++|+|.+|+|||||++.++.... ..=..++|+.... ....+...+. .++.......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 447999999999999999999986322 2223466665433 3444444332 3332211000
Q ss_pred ----CCCCChHHHHHHHHHhcC---CCeEEEEEeCCCC---CChhhHHHHHHhhcC--CCCCcEEEEEcCCh
Q 044700 233 ----SQGQELEPYLRYIRKSIA---RNRFILVIDDVWI---EDNSTWESLLQTLQE--GRPGSKILVTTDDQ 292 (795)
Q Consensus 233 ----~~~~~~~~~~~~l~~~l~---~~~~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 292 (795)
....+..++...+...+. -+..+||+|.... .+......+...+.. ...|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011144555555554442 2234999998742 122233333333322 13577888888654
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.17 E-value=0.011 Score=62.11 Aligned_cols=88 Identities=28% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++....... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5689999999999999999999863 22222468899988777653 2445543322110 12345666666665
Q ss_pred HhcC-CCeEEEEEeCCC
Q 044700 247 KSIA-RNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdvw 262 (795)
.... .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 345699999873
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.16 E-value=0.015 Score=60.68 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=56.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhcc----CceeEEEEeCCCCCHHHHHHHHHHHhcCCccc-----CCCCCCCh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRY----FDIRIWVGASADSDVLSVASSIAEALGASASA-----FSSQGQEL 238 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 238 (795)
...++.|+|.+|+||||||.+++........ -..++|++....++.+++.+ +++.++..... .-....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 5679999999999999999998863211110 24789999888887776653 44555432210 00011222
Q ss_pred H---HHHHHHHHhcC--CCeEEEEEeCC
Q 044700 239 E---PYLRYIRKSIA--RNRFILVIDDV 261 (795)
Q Consensus 239 ~---~~~~~l~~~l~--~~~~LlVlDdv 261 (795)
+ ++...+...+. .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 45668888887
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.046 Score=50.80 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=19.0
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q 044700 170 PIISILGTEGTGKTTLATLA 189 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v 189 (795)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.07 E-value=0.0088 Score=59.37 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc----cCceeEEEEeCCCCCHHHHHHHHHHHhcCCcc----cC-CCCCCCh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR----YFDIRIWVGASADSDVLSVASSIAEALGASAS----AF-SSQGQEL 238 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~-~~~~~~~ 238 (795)
...++.|+|.+|+|||||++.++....... .-..++|++....++...+. .+++.++.... .. .....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999999886321111 13578899877765655443 34444443210 00 0011222
Q ss_pred HH---HHHHHHHhcC-CCeEEEEEeCCC
Q 044700 239 EP---YLRYIRKSIA-RNRFILVIDDVW 262 (795)
Q Consensus 239 ~~---~~~~l~~~l~-~~~~LlVlDdvw 262 (795)
.+ ....+...+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2233444443 467789999873
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.07 E-value=0.019 Score=60.39 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc----cCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR----YFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++.|+|.+|+||||||.+++....... .-..++|++....++...+.+ +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 567999999999999999999886322211 224789999988888776554 344444
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.02 E-value=0.013 Score=61.70 Aligned_cols=87 Identities=25% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++... ++.++....... ....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 5579999999999999999998873 222223689999988777542 444543321110 12234555555555
Q ss_pred HhcC-CCeEEEEEeCC
Q 044700 247 KSIA-RNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdv 261 (795)
.... .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4432 44558999987
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.87 E-value=0.0069 Score=58.33 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=33.1
Q ss_pred cchhHHHHHHHHhCCC-CCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 151 VDEEKEDLVSKLLSSS-TEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 151 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
|++.+++|.+.+.... ....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888777532 2568999999999999999999986
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.85 E-value=0.025 Score=58.04 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH--HHHHHHHHHhcCCcccCCCCCCChHHH-HHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL--SVASSIAEALGASASAFSSQGQELEPY-LRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~ 244 (795)
...+|.|+|.+|+||||++..++.. ....=..+.++... .+... +-+...++..+....... ...+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~-s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHS-EGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCS-TTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecC-CccCHHHHHHHH
Confidence 4679999999999999999999873 32221234455432 33322 223334444443321100 11122222 233
Q ss_pred HHHhcCCCeEEEEEeCC
Q 044700 245 IRKSIARNRFILVIDDV 261 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdv 261 (795)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444455558888865
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.83 E-value=0.01 Score=61.91 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhc---------cC-----ceeEEEEeCCCCCHHHHHHHHHHHhcCCccc---
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMR---------YF-----DIRIWVGASADSDVLSVASSIAEALGASASA--- 230 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--- 230 (795)
...++.|+|.+|+||||||.+++.+..... .. ..++|++....++.+++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 567999999999999999998886321111 11 4789999888888776664 34555433210
Q ss_pred --CCCCCCChHH---HHHHHHHhcC--CCeEEEEEeCC
Q 044700 231 --FSSQGQELEP---YLRYIRKSIA--RNRFILVIDDV 261 (795)
Q Consensus 231 --~~~~~~~~~~---~~~~l~~~l~--~~~~LlVlDdv 261 (795)
......+.++ +...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0001222232 3334444443 34458888887
No 265
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.77 E-value=0.0087 Score=56.81 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=66.7
Q ss_pred cccCcceEEeeccC-CCcccchhhhhhhHHhhhCCeeeEEecCCCCcccccccccccccCCCCCCCeEEcCCCCcc----
Q 044700 518 SEVQNLRSLRIQYG-SKTCSLISEVLPKLLDQSRTTLRALDLSGQSWYENMTIKIPAEIGNLEFLRYLNLSLLKIA---- 592 (795)
Q Consensus 518 ~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~---- 592 (795)
.+-+.|++|+++++ ...... ...+...+.. -..|+.|+|++|..-......+.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g-a~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER-IRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH-HHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHH-HHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34567778888764 422111 1223444555 6778888888873221111122333444467888888888876
Q ss_pred -ccCcccCCCCcCcEEeccCCCC--CC-----ccchhhccCcccceeecCCcc
Q 044700 593 -ELPEELCGLWNLQTLELNWCTN--LE-----TLPQGMGKLINLEHLLNVGTS 637 (795)
Q Consensus 593 -~lp~~i~~L~~L~~L~L~~~~~--~~-----~lp~~i~~l~~L~~L~l~~~~ 637 (795)
.+.+.+..-+.|++|+|++|.. ++ .+...+..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445566666688888875422 22 233345555677777776654
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.0063 Score=58.98 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=29.4
Q ss_pred hHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 154 EKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 154 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
-+++|.+.+........+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555566554323668999999999999999999987
No 267
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.68 E-value=0.11 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++.-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 268
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.66 E-value=0.0082 Score=56.76 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC---CCCHHHHHHHHHHHhcC----CcccCCCC-----CC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA---DSDVLSVASSIAEALGA----SASAFSSQ-----GQ 236 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~----~~~~~~~~-----~~ 236 (795)
...|-|++..|.||||.|-...- +...+=-.+.++.+.. ......++..+. +.. ....+... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHH
Confidence 35677777777999999977765 3222222344554332 223334444331 000 00000000 01
Q ss_pred ChHHHHHHHHHhcCCCeE-EEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCChH
Q 044700 237 ELEPYLRYIRKSIARNRF-ILVIDDVWI---EDNSTWESLLQTLQEGRPGSKILVTTDDQS 293 (795)
Q Consensus 237 ~~~~~~~~l~~~l~~~~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (795)
........+++.+.+.+| |||||++-. -..-..+++...+........||+|+|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 112233445566655554 999999711 122344566666666667789999999873
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.61 E-value=0.046 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999874
No 270
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.57 E-value=0.058 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+|+|..|+||||||+.+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998873
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.41 E-value=0.028 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|.+|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 272
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.39 E-value=0.077 Score=53.17 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.31 E-value=0.078 Score=56.98 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 274
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.042 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...++.|+|.+|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.20 E-value=0.0065 Score=57.53 Aligned_cols=110 Identities=21% Similarity=0.140 Sum_probs=51.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
.++.|+|..|+||||++..++.+.... .. .++++.... +.+.-...+...++...... ...+..+ +.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~--d~r~~~~~i~s~~g~~~~~~--~~~~~~~----~~~~~ 73 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKI--DSRYHSTMIVSHSGNGVEAH--VIERPEE----MRKYI 73 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECE--EESSGGG----GGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeecc--ccccCcccEEecCCCceeeE--EECCHHH----HHHHh
Confidence 588999999999999997666532211 12 233333221 11000000111111110000 0111111 22333
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 250 ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
.++.-+|++|.+..-+.+ |.+....+.+. |..|++|.+..
T Consensus 74 ~~~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp CTTEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESB
T ss_pred cCCCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeecc
Confidence 345679999998654433 44444433332 77888887643
No 276
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.18 E-value=0.013 Score=62.32 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=36.9
Q ss_pred CceeecchhHHHHHHHHh-------------CCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLL-------------SSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.+..++.+...+. ........|.++|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 357999999999888882 1111346789999999999999999998
No 277
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.17 E-value=0.053 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 278
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.14 E-value=0.062 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|..|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.08 E-value=0.029 Score=58.97 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC----ceeEEEEeCCCCCHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF----DIRIWVGASADSDVLSV 216 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~ 216 (795)
...++.|+|..|+|||||++.++......... ..++|++....+....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i 182 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI 182 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH
Confidence 56899999999999999999998632111111 24589987666544443
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.94 E-value=0.011 Score=55.43 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.94 E-value=0.74 Score=50.14 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAE 222 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 222 (795)
...++.|.|.+|+||||||..++.+.... .=..++|++.. .+...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 45799999999999999999998743221 11257777654 345666666543
No 282
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.061 Score=57.43 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcch----hccCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKV----MRYFDIRIWVGASADSDVLSVASSIAEALGA 226 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 226 (795)
...++.|+|.+|+|||||+..++-.... ...-..++|++....++...+. .+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 5689999999999999999976521111 1123468899887776665543 35565554
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.90 E-value=0.013 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4478999999999999999999873
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.89 E-value=0.097 Score=56.88 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD 212 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 212 (795)
...+|+|+|..|+|||||++.++.- .. ...+.+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 4579999999999999999999873 32 224555655444444
No 285
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.88 E-value=0.012 Score=54.79 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.75 E-value=0.014 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999986
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.71 E-value=0.34 Score=49.93 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=39.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
...++.|.|.+|+||||||..++.+..... ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 557999999999999999999886432222 567787655 56777777776654
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.67 E-value=0.11 Score=54.41 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh---ccC-----------------ceeEEEEeC----CCCCHH---------
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM---RYF-----------------DIRIWVGAS----ADSDVL--------- 214 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-----------------~~~~wv~vs----~~~~~~--------- 214 (795)
...+++|+|+.|+|||||++.+..-.+.. -.| ..+.+|.-. ...++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 45799999999999999999998622110 000 112333211 111221
Q ss_pred ---------HHHHHHHHHhcCCccc--CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcC--CC
Q 044700 215 ---------SVASSIAEALGASASA--FSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQE--GR 280 (795)
Q Consensus 215 ---------~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~ 280 (795)
+...++++.++..... ........+.-.-.|.+.|..++-+|++|.--.. |...-..+...+.. ..
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 1233455555543211 0112222233344566777888889999985321 22222333333322 12
Q ss_pred CCcEEEEEcCChHHHHhhCC
Q 044700 281 PGSKILVTTDDQSIADKIGS 300 (795)
Q Consensus 281 ~gs~iivTtR~~~va~~~~~ 300 (795)
.|..||++|-+.+++.....
T Consensus 213 ~g~Tii~vTHdl~~~~~~aD 232 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRICD 232 (366)
T ss_dssp SCCEEEEEESCHHHHHHHCS
T ss_pred CCCEEEEEecCHHHHHHhCC
Confidence 47789999988887765443
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.065 Score=57.84 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=39.3
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCC-HHHHHHHHH
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSD-VLSVASSIA 221 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~ 221 (795)
.++.|..-. ..+.++|+|.+|+|||||++.+..+ ....+ +.++++-+.+..+ ..++..++.
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 344443322 3457899999999999999999884 33333 4567777776543 445555454
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.59 E-value=0.014 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.58 E-value=0.015 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.49 E-value=0.045 Score=57.21 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccC-c-eeEEEEeCCCC
Q 044700 157 DLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYF-D-IRIWVGASADS 211 (795)
Q Consensus 157 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~ 211 (795)
++++.+..-. ....++|+|.+|+|||||++.+.+ .+.... + .++++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 3445554433 567999999999999999999987 332222 2 24466677654
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.46 E-value=0.15 Score=53.01 Aligned_cols=54 Identities=15% Similarity=-0.068 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++.|.|.+|+||||||..++.+... .=..++|++. ..+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 4579999999999999999999874322 2135666654 4567777777766543
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.43 E-value=0.018 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.40 E-value=0.021 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 297
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.39 E-value=0.061 Score=50.96 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=35.2
Q ss_pred hhhhHHhhhCCeeeEEecCCCCcccc-cccccccccCCCCCCCeEEcCCCCcc-----ccCcccCCCCcCcEEeccCC
Q 044700 541 VLPKLLDQSRTTLRALDLSGQSWYEN-MTIKIPAEIGNLEFLRYLNLSLLKIA-----ELPEELCGLWNLQTLELNWC 612 (795)
Q Consensus 541 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~ 612 (795)
.+...+.. -+.|+.|+|+++..+.. ....+.+.+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|
T Consensus 32 ~l~~ll~~-n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 32 CINRLRED-DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHTT-CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHhc-CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34444444 56777777776422211 00112333444556666666666655 23333334455555555555
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.37 E-value=0.14 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.++|.+|+||||++..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.34 E-value=0.085 Score=55.41 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=62.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCccc--CCCCCCChHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASA--FSSQGQELEPYLRYI 245 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l 245 (795)
...+|+|+|+.|+|||||.+.+.. .+.......++ .+..+.... ....... ..............+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~L 189 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEAL 189 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh---------hhccccceeeeeeccccCCHHHHH
Confidence 345999999999999999999987 33222222222 222211100 0000000 000111122345578
Q ss_pred HHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHH
Q 044700 246 RKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIA 295 (795)
Q Consensus 246 ~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (795)
...|...+=+|++|++. +.+.++.+.... ..|..|++||-..+.+
T Consensus 190 a~aL~~~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 190 RSALREDPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHTTSCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHHhhhCcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 88888899999999995 344555544432 2466688888766554
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.32 E-value=0.021 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999997654
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.31 E-value=0.022 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.31 E-value=0.023 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 303
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.28 E-value=0.03 Score=57.77 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.4
Q ss_pred eeecchhHHHHHHHHhCCC--CCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 148 TCGVDEEKEDLVSKLLSSS--TEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 148 ~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++|-...+..+...+.... ....+|+|.|..|+||||||+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444455555555554442 2567999999999999999999876
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.28 E-value=0.018 Score=54.38 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+.|.|+|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.23 E-value=0.017 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.20 E-value=0.02 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.15 E-value=0.025 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 308
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.15 E-value=0.18 Score=53.18 Aligned_cols=133 Identities=18% Similarity=0.126 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchh---ccC------------ceeEEEEeC----CC---------------CCH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVM---RYF------------DIRIWVGAS----AD---------------SDV 213 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F------------~~~~wv~vs----~~---------------~~~ 213 (795)
...+++|+|+.|+|||||.+.++.-.+.. -.| ..+.+|.-. .. ...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 45799999999999999999998622100 000 012222100 00 011
Q ss_pred ---HHHHHHHHHHhcCCccc--CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCC--CCCcEE
Q 044700 214 ---LSVASSIAEALGASASA--FSSQGQELEPYLRYIRKSIARNRFILVIDDVWIE-DNSTWESLLQTLQEG--RPGSKI 285 (795)
Q Consensus 214 ---~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~i 285 (795)
.+-..++++.++..... ........+.-.-.+-+.|-.++-+++||.--.. |...-..+...+..- ..|..|
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 12344566666543211 1112233333344556667777889999985321 222222233332221 236678
Q ss_pred EEEcCChHHHHhhCC
Q 044700 286 LVTTDDQSIADKIGS 300 (795)
Q Consensus 286 ivTtR~~~va~~~~~ 300 (795)
|++|.+...+..+..
T Consensus 196 i~vTHd~~~a~~~ad 210 (372)
T 1v43_A 196 IYVTHDQVEAMTMGD 210 (372)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEEeCCHHHHHHhCC
Confidence 888888766654443
No 309
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.14 E-value=0.16 Score=51.96 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 169 IPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASAD-SDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+|+++|.+|+||||++..++.. ....=..+.+++.... ......++...+..+....... ...+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~-~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP-GEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCT-TCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecC-CCCCHHHHHHHHHH
Confidence 579999999999999999999873 2222224555554322 2223333444444443221100 11233333332333
Q ss_pred hcC-CCeEEEEEeCC
Q 044700 248 SIA-RNRFILVIDDV 261 (795)
Q Consensus 248 ~l~-~~~~LlVlDdv 261 (795)
.++ ..-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333 33337788864
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.09 E-value=0.024 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.08 E-value=0.027 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4579999999999999999999873
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.08 E-value=0.026 Score=53.02 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 313
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.07 E-value=0.12 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+|+|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.06 E-value=0.021 Score=53.63 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.|+|++|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999986
No 315
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.06 E-value=0.024 Score=58.92 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=31.3
Q ss_pred eecchhHHHHHHHHhCC--CCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 149 CGVDEEKEDLVSKLLSS--STEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 149 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
|+.+.-.+++++.+... ......|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455666666666422 11456699999999999999999987
No 316
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.06 E-value=0.03 Score=56.90 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=34.0
Q ss_pred CceeecchhHHHHHHHHhCCC----------CCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSS----------TEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
++++|.++.+.++.+....-. .-.+-+.|+|++|+||||||+.+++.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 578999887777665543210 01223899999999999999999983
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.04 E-value=0.021 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.03 E-value=0.024 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 319
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.03 E-value=0.44 Score=62.69 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=75.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRKSI 249 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 249 (795)
+-|.++|++|.|||++|+.+.... ..+ ..+.++++...+...+++.+-..+...... ..... .-.-
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~---~g~~~-------~P~~ 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS---KGLTL-------LPKS 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET---TTEEE-------EEBS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc---CCccc-------cCCC
Confidence 678899999999999997776532 122 345677777777777666665544322100 00000 0001
Q ss_pred CCCeEEEEEeCCCCCCh------hhHHHHHHhhcCCC-----C-------CcEEEEEcCChH------HHHh-hCCc--c
Q 044700 250 ARNRFILVIDDVWIEDN------STWESLLQTLQEGR-----P-------GSKILVTTDDQS------IADK-IGST--E 302 (795)
Q Consensus 250 ~~~~~LlVlDdvw~~~~------~~~~~l~~~l~~~~-----~-------gs~iivTtR~~~------va~~-~~~~--~ 302 (795)
.+++.++++||+.-... ...+.++..+..++ . +..+|.++-... +... .... +
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 46789999999632221 24555665554321 1 123444442221 1111 1111 6
Q ss_pred cCCCCChHhHHHHHHHHh
Q 044700 303 NIRRASDEASWSLFESAA 320 (795)
Q Consensus 303 ~l~~L~~~~~~~Lf~~~a 320 (795)
.+...+.++-..+|....
T Consensus 1414 ~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 777778777777776654
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.02 E-value=0.025 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.02 E-value=0.024 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.00 E-value=0.027 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.00 E-value=0.028 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.99 E-value=0.028 Score=54.20 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 325
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.98 E-value=0.17 Score=54.56 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC-HHHHHHHHHHH
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD-VLSVASSIAEA 223 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 223 (795)
+++.|.--. .-.-++|+|.+|+|||+|+.++.++. .+.+-+.++++-+.+... +.++.+++.+.
T Consensus 143 ~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 455554322 56789999999999999999998732 123346678888887654 55666666654
No 326
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.98 E-value=0.034 Score=54.32 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555443 6789999999999999999999873
No 327
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.97 E-value=0.023 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.96 E-value=0.024 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.95 E-value=0.04 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 330
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.91 E-value=0.098 Score=46.07 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=24.4
Q ss_pred eEEcCCCCcc--ccCcccCCCCcCcEEeccCCCCCCccchh-hccCcccceeecCCcc
Q 044700 583 YLNLSLLKIA--ELPEELCGLWNLQTLELNWCTNLETLPQG-MGKLINLEHLLNVGTS 637 (795)
Q Consensus 583 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 637 (795)
.++.+++.++ .+|..+. .+|++|+|++| .+..+|.. |..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4445555554 4553321 24555555555 33334332 4455555555555553
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.89 E-value=0.029 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.87 E-value=0.022 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.86 E-value=0.029 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.82 E-value=0.028 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999987
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.80 E-value=0.062 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.79 E-value=0.028 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 337
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.78 E-value=0.04 Score=55.06 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhCCCC---CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 153 EEKEDLVSKLLSSST---EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~---~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++...+..... ...+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344445444443322 467899999999999999999987
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.78 E-value=0.026 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.78 E-value=0.026 Score=56.41 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999987
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.76 E-value=0.028 Score=53.91 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.76 E-value=0.03 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999986
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.72 E-value=0.047 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|.|.|++|+||||+++.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.69 E-value=0.076 Score=51.90 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcch---hc-cCceeEEEEeCCCCCH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKV---MR-YFDIRIWVGASADSDV 213 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~ 213 (795)
...+++|+|..|+|||||++.++..... .. .-..++|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4579999999999999999999752111 11 2346788876554443
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.68 E-value=0.037 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.67 E-value=0.03 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.66 E-value=0.024 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 347
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.66 E-value=0.035 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+|||||++.++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999994
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.036 Score=53.94 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=31.2
Q ss_pred ecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 150 GVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 150 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+.++..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445556666655443 6789999999999999999998873
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.61 E-value=0.054 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.60 E-value=0.26 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 351
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.58 E-value=0.09 Score=46.32 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=39.6
Q ss_pred EEecCCCCccccccc--ccccccCCCCCCCeEEcCCCCccccCc-ccCCCCcCcEEeccCCCC
Q 044700 555 ALDLSGQSWYENMTI--KIPAEIGNLEFLRYLNLSLLKIAELPE-ELCGLWNLQTLELNWCTN 614 (795)
Q Consensus 555 ~L~L~~~~~~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~ 614 (795)
+++.+++ .+ . .+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|..
T Consensus 12 ~v~Cs~~-~L----~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GL----TWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CC----CTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CC----ccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666 44 4 5665432 468999999999999976 567889999999998854
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.57 E-value=0.038 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999986
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.55 E-value=0.039 Score=52.45 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457999999999999999999986
No 354
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.51 E-value=0.034 Score=53.30 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 355
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.50 E-value=0.056 Score=51.29 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+..+..++..- +....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 55566666542 2345799999999999999999887
No 356
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.48 E-value=0.15 Score=55.96 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+..+...+.... +.+.|.|.+|.||||++..+...
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 34444444555532 49999999999999999998873
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.47 E-value=0.035 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.45 E-value=0.029 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 359
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.41 E-value=0.9 Score=48.26 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=32.7
Q ss_pred ceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 147 ETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 147 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++|....+.++.+.+..-...-.-|.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHH
Confidence 566777777777766654222223358999999999999999986
No 360
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.41 E-value=0.34 Score=53.69 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccC-ceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYF-DIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++.|.|.+|+||||||.+++.+. .... ..++|++... +.+++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~--a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW--GTAMGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH--TTTSCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH--HHhcCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 55799999999999999999988743 2222 2577776543 56677777665443
No 361
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.41 E-value=0.04 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 362
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.39 E-value=0.039 Score=56.95 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGAS 208 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 208 (795)
+.+||+|+|-|||||||.|..+.. .....=..+.-|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 679999999999999999877765 222221246666655
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.39 E-value=0.038 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 568999999999999999999987
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.39 E-value=0.037 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 365
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.35 E-value=0.036 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.34 E-value=0.037 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 367
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.33 E-value=0.037 Score=53.93 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 368
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.27 E-value=0.12 Score=55.95 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCC-HHHHHHHHHH
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSD-VLSVASSIAE 222 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 222 (795)
+++.|.--. +-.-++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+... +.++.+++.+
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 445554432 56789999999999999999998732 123447788988887764 5566666654
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.27 E-value=0.043 Score=54.52 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.25 E-value=0.029 Score=52.80 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=17.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.24 E-value=0.039 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.22 E-value=0.039 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 373
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.20 E-value=0.081 Score=61.39 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred CceeecchhHHHHHHHHhCCC-----------CCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHH
Q 044700 146 SETCGVDEEKEDLVSKLLSSS-----------TEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVL 214 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 214 (795)
.++.|.++.+++|.+.+.-.- ...+-|.++|++|.|||.+|+++++. .... ++.++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~~---- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKGP---- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCHH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEeccc----
Confidence 578888888888877664321 13456789999999999999999993 3222 2333211
Q ss_pred HHHHHHHHHhcCCcccCCCCCCChHHHHHHHHHhcCCCeEEEEEeCC
Q 044700 215 SVASSIAEALGASASAFSSQGQELEPYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 215 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 261 (795)
+ ++. .. .......+...+...-+..+++|++|++
T Consensus 546 ~----l~s----~~-----vGese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 546 E----LLT----MW-----FGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp H----HHT----TT-----CSSCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred h----hhc----cc-----cchHHHHHHHHHHHHHHcCCceeechhh
Confidence 1 111 11 1222333444444444667899999987
No 374
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.19 E-value=0.064 Score=57.77 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=36.3
Q ss_pred CceeecchhHHHHHHHHhCC------------CCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSS------------STEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47899999888887776321 01345688999999999999999998
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.19 E-value=0.046 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999995
No 376
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.14 E-value=0.044 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999987
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.13 E-value=0.04 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 378
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.11 E-value=0.24 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999987
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.036 Score=51.53 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.11 E-value=0.042 Score=52.15 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.09 E-value=0.064 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.07 E-value=0.11 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.05 E-value=0.28 Score=51.83 Aligned_cols=109 Identities=15% Similarity=0.256 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeE-EEEeCCCCCHHHHHHHHHHHhcCCcccCCC--CCCChHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRI-WVGASADSDVLSVASSIAEALGASASAFSS--QGQELEPYLRY 244 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~ 244 (795)
...+|+|+|+.|+||||+++.+.. .+.....+.+ ++...-... +......... ...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBSCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHHHHHHH
Confidence 457999999999999999999987 3322222333 333211100 0000000000 00011123456
Q ss_pred HHHhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHH
Q 044700 245 IRKSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSI 294 (795)
Q Consensus 245 l~~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (795)
+...+...+-+|++|.+. +.+......... ..|..|+.|+-..++
T Consensus 202 l~~~L~~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHHHTTSCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HHHHhhhCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 677777777799999995 333433333322 346667777765543
No 384
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.05 E-value=0.051 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999986
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.04 E-value=0.047 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 386
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.01 E-value=0.076 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.95 E-value=0.046 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+||.|.|++|+||||.|+.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999987
No 388
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.93 E-value=0.08 Score=55.84 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++...+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555654333678999999999999999999875
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.93 E-value=0.12 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.90 E-value=0.053 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 391
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.89 E-value=0.12 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|.|+|++|+||||+|+.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999999873
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.85 E-value=0.14 Score=52.31 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-eeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-IRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
...+++|+|.+|+|||||++.++.... ..-. .++|+.... +..++.+.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 457999999999999999999987432 2222 466665432 4455555554443
No 393
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.84 E-value=0.14 Score=65.04 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..++|.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++....... ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 5689999999999999999999873 322223688999888887665 444442211110 02334455566665
Q ss_pred Hhc-CCCeEEEEEeCC
Q 044700 247 KSI-ARNRFILVIDDV 261 (795)
Q Consensus 247 ~~l-~~~~~LlVlDdv 261 (795)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 554 356679999998
No 394
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.84 E-value=0.16 Score=53.02 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhc-cCc-eeEEEEeCCC
Q 044700 157 DLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMR-YFD-IRIWVGASAD 210 (795)
Q Consensus 157 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~ 210 (795)
++++.+.--. ..+-++|+|.+|+|||+|+.++.+. +.. +=+ .++++-+.+.
T Consensus 164 raID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred hhhhhccccc-CCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 4566665433 5678999999999999999999883 322 113 2355666654
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.76 E-value=0.03 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 396
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.75 E-value=0.047 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.+++|+|..|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999873
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.74 E-value=0.051 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
....|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 398
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.73 E-value=0.26 Score=48.39 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC-cchhccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCcccC-
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS-YKVMRYF-DIRIWVGASADSDVLSVASSIAEALGASASAF- 231 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~- 231 (795)
.++++..+..+ +.+.|.|..|+||||++..+.-+ ....... ...+.+......-...+.+.+...++......
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 34455555444 68999999999999876555432 1111222 22333333333333444555554443321000
Q ss_pred ----------C-----CCCCChHHHHHHHHHhcCCCeEEEEEeCCCC
Q 044700 232 ----------S-----SQGQELEPYLRYIRKSIARNRFILVIDDVWI 263 (795)
Q Consensus 232 ----------~-----~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~ 263 (795)
. ....+.+.+...+...+++- -+||+|.+..
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0 00123345555665544443 3789999965
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.72 E-value=0.055 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 400
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.71 E-value=0.27 Score=55.23 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC
Q 044700 153 EEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS 232 (795)
Q Consensus 153 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 232 (795)
.+..+.+..+.. .+++.|.|.+|.||||++..+.... ... ...+.+...... ..+.+.+.++....
T Consensus 192 ~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~a~--- 257 (574)
T 3e1s_A 192 EEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTGK----AARRLGEVTGRTAS--- 257 (574)
T ss_dssp HHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHH----HHHHHHHHHTSCEE---
T ss_pred HHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcHH----HHHHhHhhhcccHH---
Confidence 333444444443 2689999999999999999988732 221 223444433221 22223333322211
Q ss_pred CCCCChHHHHHHHH-Hhc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE
Q 044700 233 SQGQELEPYLRYIR-KSI-----ARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVT 288 (795)
Q Consensus 233 ~~~~~~~~~~~~l~-~~l-----~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 288 (795)
+...+..... ... ..+--+||+|++..-+...+..+...++ .|.++|+.
T Consensus 258 ----Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 258 ----TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp ----EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred ----HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 1100000000 000 0122489999986666566666666554 56677664
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.69 E-value=0.092 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.65 E-value=0.058 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.61 E-value=0.084 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999999986
No 404
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.59 E-value=0.062 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 405
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.59 E-value=0.058 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999987
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.58 E-value=0.087 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999987
No 407
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.58 E-value=0.1 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 408
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.56 E-value=0.045 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh-c
Q 044700 168 EIPIISILGTEGTGKTTLATLAY-N 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~-~ 191 (795)
...+++|+|+.|+|||||++.+. .
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34799999999999999999998 5
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.56 E-value=0.061 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999987
No 410
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.55 E-value=0.059 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 411
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.49 E-value=0.056 Score=52.41 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 412
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.44 E-value=0.065 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
. .+++|+|+.|+|||||.+.++.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 6 7999999999999999999987
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.43 E-value=0.081 Score=50.96 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..+++|+|..|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.37 E-value=0.075 Score=49.49 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.36 E-value=0.054 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.35 E-value=0.065 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.29 E-value=0.07 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.29 E-value=0.061 Score=52.14 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.28 E-value=0.072 Score=60.65 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..++|.+..++.+...+... ..+.|+|.+|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 47899999888888887765 58899999999999999999873
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.22 E-value=0.067 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 421
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.21 E-value=0.058 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
....|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.13 E-value=0.18 Score=63.07 Aligned_cols=87 Identities=25% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
.-++|-|+|+.|+||||||.++.. +..+.=..++|++..+..++.- ++.++....... ..+...++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 568999999999999999999997 4444556789999998888764 677776544321 24455566666666
Q ss_pred HhcC-CCeEEEEEeCC
Q 044700 247 KSIA-RNRFILVIDDV 261 (795)
Q Consensus 247 ~~l~-~~~~LlVlDdv 261 (795)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6664 45569999987
No 423
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.12 E-value=0.066 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++|+|.|+.|+||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999987
No 424
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.10 E-value=0.21 Score=62.53 Aligned_cols=89 Identities=25% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..+++.|+|.+|+||||||.+++... ...=..++|++....++... ++.++....... ....+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 56899999999999999999998743 22334789999888877642 555554332110 13345667766666
Q ss_pred Hhc-CCCeEEEEEeCCCC
Q 044700 247 KSI-ARNRFILVIDDVWI 263 (795)
Q Consensus 247 ~~l-~~~~~LlVlDdvw~ 263 (795)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34556999999743
No 425
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.07 E-value=0.56 Score=50.97 Aligned_cols=55 Identities=9% Similarity=-0.139 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALG 225 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 225 (795)
...++.|.|.+|+||||||..++.+.... .=..++|++.. .+..++...++....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 55799999999999999999988743221 11357776654 456677777665443
No 426
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.02 E-value=0.11 Score=51.34 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA 209 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 209 (795)
...++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 45799999999999999998887632 22223677876544
No 427
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.02 E-value=0.077 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||.+.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 447999999999999999999987
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.99 E-value=0.23 Score=62.95 Aligned_cols=88 Identities=25% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCC-CCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFS-SQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 246 (795)
..+++.|+|.+|+||||||.+++... ...=..++|++....++... ++.++....... ....+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 56899999999999999999998743 32224688998888777542 455554322110 13456677777766
Q ss_pred Hhc-CCCeEEEEEeCCC
Q 044700 247 KSI-ARNRFILVIDDVW 262 (795)
Q Consensus 247 ~~l-~~~~~LlVlDdvw 262 (795)
... +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456699999873
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.98 E-value=0.066 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999987
No 430
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.97 E-value=0.077 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 457999999999999999999986
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.93 E-value=0.1 Score=52.23 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA-DSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIR 246 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 246 (795)
...+++|+|+.|+|||||++.+.. .....+.+.+++.-.. .+-... .+ .+. ..... . .+...+...+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~---~~--~~v-~q~~~--g-l~~~~l~~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKH---KK--SIV-NQREV--G-EDTKSFADALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC---SS--SEE-EEEEB--T-TTBSCHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCC---cc--eee-eHHHh--C-CCHHHHHHHHH
Confidence 557999999999999999999987 3322223444332110 000000 00 000 00000 0 01122345566
Q ss_pred HhcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChHHH
Q 044700 247 KSIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQSIA 295 (795)
Q Consensus 247 ~~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (795)
..+..++-+|++|+.- +.+....+.... ..|.-|++||-+.++.
T Consensus 93 ~aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 93 AALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6666667789999985 333333333322 2466788888766543
No 432
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.93 E-value=0.079 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999987
No 433
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.91 E-value=0.078 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999987
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.71 Score=52.07 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=68.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcchh-c-cC-c-eeEEEEeC--C--CCCHH--------------HHHHHHHHHhcCC
Q 044700 170 PIISILGTEGTGKTTLATLAYNSYKVM-R-YF-D-IRIWVGAS--A--DSDVL--------------SVASSIAEALGAS 227 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-~F-~-~~~wv~vs--~--~~~~~--------------~~~~~i~~~l~~~ 227 (795)
.+++|+|..|+|||||++.++.-.+.. + .. . .+.++.-. . ..++. .....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 679999999999999999998632211 1 00 0 12222110 0 11222 2233444554433
Q ss_pred ccc--CCCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChHHHHhhCCc
Q 044700 228 ASA--FSSQGQELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEG--RPGSKILVTTDDQSIADKIGST 301 (795)
Q Consensus 228 ~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~va~~~~~~ 301 (795)
... ........+.-.-.|.+.|..++-+++||.--. -|...-..+...+... ..|..||++|-+.+.+......
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDr 537 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 211 001222223334456677888888999997422 1222223333222221 2366788888888777665443
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.83 E-value=0.083 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 447999999999999999999987
No 436
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.81 E-value=0.083 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446999999999999999999987
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.76 E-value=0.08 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.75 E-value=0.085 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.73 E-value=0.086 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999987
No 440
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.71 E-value=0.65 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 557999999999999999999976
No 441
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.65 E-value=0.086 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999986
No 442
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.62 E-value=0.09 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999873
No 443
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.60 E-value=0.13 Score=54.21 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 156 EDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 156 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..+++-+.-.-....+++|+|+.|+|||||++.++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444433322567999999999999999999996
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.59 E-value=0.087 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 445
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.58 E-value=0.091 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999986
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.57 E-value=0.09 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999873
No 447
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.56 E-value=0.092 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4469999999999999999999873
No 448
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.53 E-value=0.1 Score=56.33 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+|.|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998873
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.45 E-value=0.1 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.44 E-value=0.096 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999986
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.42 E-value=0.086 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 452
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.37 E-value=0.11 Score=51.86 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999873
No 453
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.37 E-value=0.097 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 454
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.35 E-value=0.1 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...++.+.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.34 E-value=0.092 Score=50.43 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.32 E-value=0.099 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999999999873
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.30 E-value=0.09 Score=51.30 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.30 E-value=0.09 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.24 E-value=0.18 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999983
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.22 E-value=0.11 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999998
No 461
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.19 E-value=0.055 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.13 E-value=0.12 Score=48.69 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999874
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.12 E-value=0.11 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 464
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.11 E-value=0.18 Score=51.89 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASA 209 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 209 (795)
..++|+|+|-||+||||+|..++.- ....=..++-|+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 6789999999999999999888762 222212466666653
No 465
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.02 E-value=0.18 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 568999999999999999999987
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.95 E-value=0.098 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 467
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.93 E-value=0.17 Score=54.12 Aligned_cols=53 Identities=6% Similarity=0.005 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCc----eeEEEEeCCCC-CHHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFD----IRIWVGASADS-DVLSVASSIAE 222 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~ 222 (795)
.-.-++|+|..|+|||+|+.++++... .+-+ .++++-+.+.. .+.++.+.+.+
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 445688999999999999999998433 2223 66777777654 35566666544
No 468
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.92 E-value=0.35 Score=51.10 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 146 SETCGVDEEKEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|....+.++...+..-......|.|.|.+|.||+++|+.+.+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 4577877777666665543222234467999999999999999986
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.91 E-value=0.11 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q 044700 169 IPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.85 E-value=1.6 Score=47.29 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 224 (795)
...++.|.|.+|+||||||..++.+.... =..++|++.. .+.+++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 55799999999999999999998743222 1256676544 34455666655443
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.80 E-value=0.11 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 457999999999999999999986
No 472
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.76 E-value=1.2 Score=52.81 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCc-----eeEEEEeCCC-------CCHH-----------HHHHHHHHHh
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFD-----IRIWVGASAD-------SDVL-----------SVASSIAEAL 224 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~vs~~-------~~~~-----------~~~~~i~~~l 224 (795)
...+++|+|..|+|||||++.+..- .+. .++ ...+ +.+. .++. +-...+++.+
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 4579999999999999999999831 111 010 1122 2211 1222 2234556666
Q ss_pred cCCcc--cC-CCCCCChHHHHHHHHHhcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChHHHHhhCC
Q 044700 225 GASAS--AF-SSQGQELEPYLRYIRKSIARNRFILVIDDVWI-EDNSTWESLLQTLQEGRPGSKILVTTDDQSIADKIGS 300 (795)
Q Consensus 225 ~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~ 300 (795)
+.... .. .......+...-.|-+.+-.++-+++||.--. -|...-..+...+.. .|..||++|-+...+.....
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCS
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCC
Confidence 54210 00 00222223333345556666777999998522 233333444444444 46778888888777665444
Q ss_pred c
Q 044700 301 T 301 (795)
Q Consensus 301 ~ 301 (795)
.
T Consensus 614 r 614 (986)
T 2iw3_A 614 Y 614 (986)
T ss_dssp E
T ss_pred E
Confidence 3
No 473
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.72 E-value=0.12 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.72 E-value=0.1 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q 044700 170 PIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 475
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.72 E-value=0.28 Score=53.09 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=55.3
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHH-HHHhcCcchhccCc-eeEEEEeCCCCC-HHHHHHHHHHHhcCCccc----
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLA-TLAYNSYKVMRYFD-IRIWVGASADSD-VLSVASSIAEALGASASA---- 230 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~---- 230 (795)
.++.|.--. ...-++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+... +.++.+.+.+.=......
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 444444322 5577899999999999995 5777732 345 357888887654 445555555421111000
Q ss_pred CCCCCCChH--------HHHHHHHHhcCCCeEEEEEeCC
Q 044700 231 FSSQGQELE--------PYLRYIRKSIARNRFILVIDDV 261 (795)
Q Consensus 231 ~~~~~~~~~--------~~~~~l~~~l~~~~~LlVlDdv 261 (795)
...++.... .+.++++. +++.+||++||+
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 000111111 22233433 589999999998
No 476
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.71 E-value=0.18 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 477
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.67 E-value=0.1 Score=55.76 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.64 E-value=0.11 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 479
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.60 E-value=0.33 Score=52.60 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHH-HHHhcCcch----hccCc-eeEEEEeCCCCC-HHHHHHHHHH
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLA-TLAYNSYKV----MRYFD-IRIWVGASADSD-VLSVASSIAE 222 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~ 222 (795)
.++.|.--. .-.-++|+|..|+|||+|| ..+.|.... ..+-+ .++++-+.+... +.++.+.+.+
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 445554332 5577899999999999995 577773321 01244 477888887654 4555555544
No 480
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.56 E-value=0.24 Score=49.22 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 155 KEDLVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 155 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+..+|........-|.++|++|.|||.+|.++++
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3446677766523456799999999999999999997
No 481
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.55 E-value=0.13 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.55 E-value=0.13 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 044700 171 IISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (795)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 483
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.55 E-value=0.22 Score=54.00 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=39.8
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHH-HHHhcCcchhccCc-eeEEEEeCCCCC-HHHHHHHHHH
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLA-TLAYNSYKVMRYFD-IRIWVGASADSD-VLSVASSIAE 222 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~ 222 (795)
.++.|.--. ...-++|+|..|+|||+|| .++.+.. .-+ .++++-+.+... +.++.+.+.+
T Consensus 165 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 165 AIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp HHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 444443322 5577899999999999995 5788742 345 357888887654 4555555544
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.53 E-value=0.15 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.42 E-value=0.14 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 486
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.37 E-value=0.2 Score=47.29 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
..+++.++|..|.||||.+..+.++... ..+. ++.+.... +.+.-...+...++...... ...+..+ +.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~k-V~v~k~~~--d~r~~~~~i~s~~g~~~~a~--~~~~~~~----i~~ 76 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQK-IQVFKPEI--DNRYSKEDVVSHMGEKEQAV--AIKNSRE----ILK 76 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCC-EEEEEEC---------CEEECTTSCEEECE--EESSSTH----HHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCE-EEEEEecc--CccchHHHHHhhcCCceeeE--eeCCHHH----HHH
Confidence 3479999999999999999888774322 2233 33332111 11111112222332211100 0111122 333
Q ss_pred hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 044700 248 SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQ 292 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (795)
.+.++--+|++|.+..-+.+..+.+....+ .|..||+|.++.
T Consensus 77 ~~~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 77 YFEEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp HCCTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred HHhccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 333333499999875443344444433322 267899998755
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.35 E-value=0.13 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.21 E-value=0.22 Score=51.90 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCChHHHHHHHHhc
Q 044700 158 LVSKLLSSSTEIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 158 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433222678999999999999999999985
No 489
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.18 E-value=0.31 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999999999875
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.15 E-value=0.16 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
...+++|+|..|+|||||++.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999999873
No 491
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.07 E-value=0.15 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q 044700 169 IPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
.+.|.|.|..|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999873
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.05 E-value=0.14 Score=46.87 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.04 E-value=0.15 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
--|.|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999874
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.01 E-value=0.14 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 495
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.91 E-value=0.15 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 496
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.90 E-value=0.096 Score=59.25 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=33.2
Q ss_pred CceeecchhHHHHHHHHhCCCC---------CCcEEEEEcCCCChHHHHHHHHhcC
Q 044700 146 SETCGVDEEKEDLVSKLLSSST---------EIPIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 146 ~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
+.++|.+..+..+.-.|..... ...-|.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4678887766666554444310 0115889999999999999999984
No 497
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.87 E-value=0.15 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 044700 171 IISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999999763
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.86 E-value=0.14 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q 044700 170 PIISILGTEGTGKTTLATLAYNS 192 (795)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (795)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 499
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.85 E-value=0.57 Score=44.79 Aligned_cols=113 Identities=20% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcchhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCcccCCCCCCChHHHHHHHHH
Q 044700 168 EIPIISILGTEGTGKTTLATLAYNSYKVMRYFDIRIWVGASADSDVLSVASSIAEALGASASAFSSQGQELEPYLRYIRK 247 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 247 (795)
...+..++|.-|.||||.|.....+.... .. .++.+.... +.+.-...+...++...... ...+.. .+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~-kVli~k~~~--d~R~ge~~i~s~~g~~~~a~--~~~~~~----~~~~ 96 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQ-HAIVFKPCI--DNRYSEEDVVSHNGLKVKAV--PVSASK----DIFK 96 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TC-CEEEEECC-------------------CCEE--ECSSGG----GGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEecc--CCcchHHHHHhhcCCeeEEe--ecCCHH----HHHH
Confidence 45788999999999999998887743222 22 333333221 22222234444444332211 111111 2223
Q ss_pred hcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChH
Q 044700 248 SIARNRFILVIDDVWIEDNSTWESLLQTLQEGRPGSKILVTTDDQS 293 (795)
Q Consensus 248 ~l~~~~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (795)
.+.++--+|++|.+..-+.+..+.+ ..+.+ .|-.||+|-++.+
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 3333334999999855444455444 33332 3678999987554
No 500
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.77 E-value=1.3 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q 044700 168 EIPIISILGTEGTGKTTLATLAYN 191 (795)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (795)
...+++|+|..|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999986
Done!