BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044703
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 112/158 (70%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVFT E+TS I P RLFKA ++D+ NL+PK+ PQA+K EI EGDGG G+I++I E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G+Q K+++D++D EN+SY Y+LIEGD L D LEKISY+ K + GGS TS Y
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKGN+ + EE +K GKEK+ ++K++E YL +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 111/158 (70%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVFT E+TS I P RLFKA ++D+ NL+PK+ PQA+K EI GDGG G+I++I E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G+Q K+++D++D EN+SY Y+LIEGD L D LEKISY+ K + GGS TS Y
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKGN+ + EE +K GKEK+ ++K++E YL +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
MGV+T +E+TS I +LFKA ++D+ NLIPK+ PQAVK EI EGDGG G+I++I
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
EG+ K+++ ++D N +Y YSLIEGD L + +EKI Y+ K GG+ TS
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
Y+TKG++ + EE +K GKEK+ ++K++E YL +P EY
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
M +T+ E SPI+P RLFKAL+++ H ++ K P KS EI EGDGG G++ +I V
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
+G+ + ++ D +D NF KY+L EGDVL D +EK+ Y+VK E GGSK +T T
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
Y+ K + EEE+K G++K+ YK VE YL NPE +A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 102/158 (64%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL+PK+ PQA+ S+E EG+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL PK+ PQA+ S+E EG+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL PK+ PQA+ S+E EG+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I AR+FKA I+D L+PK+ PQA+ S+E EG+GG G+I++IN E
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGG +++ Y
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKGN + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL PK+ PQA+ S+E EG+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL PK+ PQA+ S+E G+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D NL PK+ PQA+ S+E EG+GG G+I++I+ E
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T +GGS + + Y
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E+IK KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 99/158 (62%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF E TS I ARLFKA I+D L P++ PQA+ S+E G+GG G+I++I+ E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G K K+RVD +D NF Y YS+IEG + D LEKIS ++K T DGGS +++ Y
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ + E++K KE + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVFT DE TS I+PARL+KAL+ D+ +IPK + +A++SIE EG+GG G+I+++ ++E
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G + K ++++A+D N Y YS++ G L D +EKIS++ K A+GGS +T
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
TKG+ EEE K K + A +K +ENYL +PE
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVFT DE SP++PA L+KAL+ D+ N+IPK + + KS+E EG+GG G+I++I +E
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
+ K ++++++D N Y YS++ G L D EKI++D K +GGS +T Y
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
TKG+ ++E+K GK K+ A++K +E YL+ +P+
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
MGVFT DEYTS I+PA+L+KAL+ D+ +IPK + + ++S+EI EG+GG G+I+++ +
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
EG + K ++++A+D N Y YS++ G L D +EKIS++ K A+GGS +T
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
TKG+ EEE K K + A +K +E+YL +P+
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
MGV T E TS +S ++F+ ++D ++PK P A KS+EI +GDGG G+++ I +
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
+G + R+D ++ E ++ YS+I+GD+L+ +E I V PTADGGS T+
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
++TKG+ V+ EE IK E++ A++K +E YL+ N
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
G+F +E +S ++PA+L+KAL DS ++PK++ + ++S+EI EG+GG G+I++I +
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
+++DA+D N +Y YS+I G+ L + LEKISY+ K P DGGS + +
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
+TKG+ VL+E + K K L ++K +E Y++ +P+
Sbjct: 120 HTKGD-VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF DE+ S ++ A+LFKAL DS ++IPK++ Q ++S+EI EG+GG G++++I
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G +++DA+D +F Y YS++ G L + LEKI+++ K DGGS + +
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156
+TKG+ VL++ +E K + ++K VE Y++ NP
Sbjct: 120 HTKGD-VLSDAVREEAKARGTGLFKAVEGYVLANP 153
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
MG + + E TS +S ++F +++D +IPK A KS+E+ +GDGGAG++R I +
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
EG+ + R DA++ E SY ++I+GD+L+ +E I + PTADGGS T+
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
++TKG+ V+ EE IK ++ A++K +E YL+ N
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
GVF DE +S ++PA+L+KAL DS + K+ ++SIE+ EG+GG G+I++I E
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62 GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
G++ +VDA+D N Y YS++ G L + LEK+S++ K + GGS + +T +
Sbjct: 60 GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
+TKG+ L++ + K +K +E Y++ NP EY
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
MGV T EY S +S +L++ ++ D + + PK +P+ ++ E EGDGG G+I+++ V
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 61 EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDK-LEKISYDVKFEPTADGGSKNTMTS 119
+K +D +D EN +Y YS+ EG L D+ LEKI ++ K PT + G T+
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 120 TYYTKG-NIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
YYTKG +I L+++ ++ G E+ K VE++L+ NP+
Sbjct: 124 KYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 19 LFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE 78
L+ L D ++PK++P VK +++ EGDGG G+I N + +V S R + + +
Sbjct: 18 LWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLP--EVSPSYQREEITEFD 75
Query: 79 NFSYKYSL--IEGDVLMDKL 96
S++ L IEG L L
Sbjct: 76 ESSHEIGLQVIEGGYLSQGL 95
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 17 ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVDAL 75
A F + + + K P ++ ++ EGD G GSI N V + K +K R++A+
Sbjct: 29 ADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAV 88
Query: 76 DLENFSYKYSLIEGDVL 92
+ + + +IEGD++
Sbjct: 89 EPDKNLITFRVIEGDLM 105
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 48 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 105
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 106 VDDDHRVLSFRIVGGE 121
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 33 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 90
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 91 VDDDHRVLSFRVVGGE 106
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 34 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 91
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 92 VDDDHRVLSFRVVGGE 107
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 45 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 102
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 103 VDDDHRVLSFRVVGGE 118
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 34 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 91
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 92 VDDDHRVLSFRVVGGE 107
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 48 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEF 105
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 106 VDDDHRVLSFRVVGGE 121
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
+PA + LI N P+ VK + GDG GS+R++ V+ G S R++
Sbjct: 34 APASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEF 91
Query: 75 LDLENFSYKYSLIEGD 90
+D ++ + ++ G+
Sbjct: 92 VDDDHRVLSFRVVGGE 107
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 19 LFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG 62
L+ A D ++PK++P VK +++ EGDGG G+ N + G
Sbjct: 18 LWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPG 61
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 31 IPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90
+P L+P A + +EI GDGG G+I V G K + +D E+ K IEG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEGG 115
Query: 91 VL 92
L
Sbjct: 116 YL 117
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 47 GDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFE 106
GD GS+R++NV G S R++ LD E +I GD +L+ S +
Sbjct: 91 GDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGD---HRLKNYSSILTVH 147
Query: 107 PTADGGSKNTM 117
P G TM
Sbjct: 148 PEIIEGRAGTM 158
>pdb|3IDO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3IDO|B Chain B, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3ILY|A Chain A, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3ILY|B Chain B, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3JS5|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With Hepes In The Active Site.
High Resolution, Alternative Crystal Form With 1
Molecule In Asymmetric Unit
Length = 178
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNR 71
SP + A + K ++ +H+L K + + + EG +R++ G QV
Sbjct: 35 SPAAEAVMKK--VIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRP 92
Query: 72 VDALDLENFSYKYSL 86
V + D +NF Y +++
Sbjct: 93 VVSSDFKNFDYIFAM 107
>pdb|1DC1|A Chain A, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
pdb|1DC1|B Chain B, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
Length = 323
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 44 IFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84
+F+GD G++R I Q K ++ + ALD+ N YK+
Sbjct: 120 LFQGDSLGGTMRNIAGALAQQ-KLTRAIISALDIANIPYKW 159
>pdb|3JVI|A Chain A, Product State Mimic Crystal Structure Of Protein
Tyrosine Phosphatase From Entamoeba Histolytica
Length = 161
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNR 71
SP + A + K ++ +H+L K + + + EG +R++ G QV
Sbjct: 18 SPAAEAVMKK--VIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRP 75
Query: 72 VDALDLENFSYKYSL 86
V + D +NF Y +++
Sbjct: 76 VVSSDFKNFDYIFAM 90
>pdb|4AS2|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS3|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
Length = 327
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 51 AGSIRQIN-VVEGNQVKCSKNRVDALDLENFSYKYSL---------IEGDVLMDKLEKIS 100
A + RQ+N ++E N +K D++N SY+Y L ++G + D+L+
Sbjct: 8 APAARQLNALIEAN---ANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDP-- 62
Query: 101 YDVKFEPTAD-GGSKNTMTSTYY 122
+K P D G K ++ S YY
Sbjct: 63 -SLKLIPFKDQAGHKESLFSYYY 84
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 153 MQNPEEYASLEFSSLIKN 170
+ NPEE+ LEF+ LIKN
Sbjct: 262 LGNPEEHTILEFAQLIKN 279
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 153 MQNPEEYASLEFSSLIKN 170
+ NPEE+ LEF+ LIKN
Sbjct: 240 LGNPEEHTILEFAQLIKN 257
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 52 GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFE 106
G R + V+ G S R+D LD E +S+I G+ + + ++ +FE
Sbjct: 79 GCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFE 133
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 52 GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFE 106
G R + V+ G S R+D LD E +S+I G+ + + ++ +FE
Sbjct: 96 GCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFE 150
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 31 IPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKYSLIEG 89
+PK +P K++ + + + I+ + E ++ S NR+ +LD F + L
Sbjct: 46 VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105
Query: 90 DVLMDKLEKIS 100
DV ++L+ IS
Sbjct: 106 DVSHNRLQNIS 116
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 52 GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFE 106
G R + V+ G S R+D LD E +S+I G+ + + ++ +FE
Sbjct: 78 GCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFE 132
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 52 GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFE 106
G R + V+ G S R+D LD E +S+I G+ + + ++ +FE
Sbjct: 78 GCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFE 132
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVL 129
L+ G ++KL ++Y + F P +D GS + + Y + ++VL
Sbjct: 119 LVRGFFKIEKLGSLAYKLVFCPKSDSGSCSDIGINYEGRRSLVL 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,339,757
Number of Sequences: 62578
Number of extensions: 223239
Number of successful extensions: 492
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 73
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)