Query 044703
Match_columns 179
No_of_seqs 145 out of 890
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 6.3E-42 1.4E-46 264.6 19.4 150 1-155 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.5E-35 3.2E-40 227.7 19.9 146 4-154 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 7.8E-18 1.7E-22 124.4 17.7 138 5-152 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 6.8E-15 1.5E-19 108.6 19.2 108 3-123 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 5.2E-15 1.1E-19 111.0 17.0 137 6-153 1-143 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 7E-14 1.5E-18 104.7 15.7 138 6-152 1-140 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 7.8E-13 1.7E-17 98.0 18.0 112 4-125 2-114 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.5 7.7E-13 1.7E-17 97.3 16.5 136 6-152 1-138 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.5 2.5E-13 5.4E-18 101.7 13.8 134 7-153 2-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 9.5E-12 2.1E-16 92.0 16.8 106 5-123 2-107 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.4 1.7E-11 3.6E-16 90.4 16.8 110 6-124 2-112 (141)
12 cd07812 SRPBCC START/RHO_alpha 99.4 2E-11 4.2E-16 87.6 15.8 135 7-150 2-139 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.4 3E-11 6.4E-16 92.7 16.8 116 5-131 2-120 (146)
14 PF03364 Polyketide_cyc: Polyk 99.3 8.5E-11 1.8E-15 86.7 15.3 126 12-148 1-129 (130)
15 cd05018 CoxG Carbon monoxide d 99.3 1.3E-10 2.7E-15 86.5 15.8 137 5-151 2-142 (144)
16 cd07814 SRPBCC_CalC_Aha1-like 99.3 8.1E-11 1.8E-15 87.0 14.2 137 6-153 2-138 (139)
17 cd07825 SRPBCC_7 Ligand-bindin 99.3 5.6E-11 1.2E-15 89.0 13.2 139 6-152 2-143 (144)
18 cd07818 SRPBCC_1 Ligand-bindin 99.3 1.8E-10 3.9E-15 86.9 15.9 112 4-125 2-118 (150)
19 cd07817 SRPBCC_8 Ligand-bindin 99.3 1.2E-10 2.7E-15 86.1 14.3 108 5-126 1-108 (139)
20 cd07820 SRPBCC_3 Ligand-bindin 99.2 2.6E-10 5.7E-15 85.5 12.8 108 6-123 1-111 (137)
21 cd07824 SRPBCC_6 Ligand-bindin 99.2 1.1E-09 2.5E-14 82.9 16.3 108 6-125 3-113 (146)
22 PRK10724 hypothetical protein; 99.2 8.2E-10 1.8E-14 85.9 15.2 135 4-151 15-150 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 3.5E-09 7.6E-14 80.2 15.7 139 7-152 2-144 (146)
24 COG3427 Carbon monoxide dehydr 98.9 6.4E-08 1.4E-12 74.2 13.6 139 6-154 3-145 (146)
25 PF06240 COXG: Carbon monoxide 98.8 3.8E-07 8.3E-12 69.1 15.0 134 9-152 2-139 (140)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 3.9E-07 8.4E-12 70.1 13.1 139 4-166 11-149 (157)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.7 6.1E-07 1.3E-11 66.8 12.3 138 5-153 2-144 (145)
28 cd08876 START_1 Uncharacterize 98.5 1.9E-05 4.1E-10 62.4 17.9 144 4-152 41-194 (195)
29 COG5637 Predicted integral mem 98.5 1.4E-06 3.1E-11 68.8 10.4 109 4-126 70-179 (217)
30 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 5.5E-06 1.2E-10 60.9 13.2 134 5-153 1-135 (136)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 1.4E-05 3E-10 60.0 13.2 134 6-153 2-138 (139)
32 cd08895 SRPBCC_CalC_Aha1-like_ 98.4 5.8E-05 1.3E-09 57.0 16.2 136 5-153 1-145 (146)
33 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 7.3E-05 1.6E-09 56.2 16.5 137 6-153 2-142 (143)
34 cd07826 SRPBCC_CalC_Aha1-like_ 98.4 3.1E-05 6.8E-10 58.4 14.4 138 6-153 2-141 (142)
35 COG2867 Oligoketide cyclase/li 98.2 2.2E-05 4.8E-10 60.1 11.2 112 4-125 2-113 (146)
36 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 6E-05 1.3E-09 56.0 13.2 128 5-153 1-132 (133)
37 cd08896 SRPBCC_CalC_Aha1-like_ 98.2 9.1E-05 2E-09 55.9 13.9 139 6-153 2-145 (146)
38 cd08891 SRPBCC_CalC Ligand-bin 98.2 0.00013 2.7E-09 55.3 14.3 137 6-153 2-148 (149)
39 PF08327 AHSA1: Activator of H 98.1 0.00025 5.5E-09 51.2 13.6 122 13-152 1-123 (124)
40 COG3832 Uncharacterized conser 98.0 0.0006 1.3E-08 52.2 14.6 140 3-153 7-148 (149)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.7 0.00071 1.5E-08 50.5 11.3 129 6-155 2-133 (136)
42 cd08892 SRPBCC_Aha1 Putative h 97.6 0.0047 1E-07 45.5 13.7 122 6-152 2-124 (126)
43 cd08873 START_STARD14_15-like 97.4 0.021 4.5E-07 47.3 16.5 146 5-155 78-235 (235)
44 PTZ00220 Activator of HSP-90 A 97.4 0.0026 5.7E-08 47.6 10.1 123 12-152 1-126 (132)
45 cd08874 START_STARD9-like C-te 97.2 0.038 8.2E-07 44.7 15.5 121 6-129 47-181 (205)
46 cd08877 START_2 Uncharacterize 96.9 0.089 1.9E-06 42.3 15.5 145 4-153 46-213 (215)
47 cd08903 START_STARD5-like Lipi 96.7 0.24 5.2E-06 39.9 16.7 143 6-153 48-206 (208)
48 cd08913 START_STARD14-like Lip 96.7 0.17 3.6E-06 42.0 15.2 144 5-155 82-240 (240)
49 cd08905 START_STARD1-like Chol 96.5 0.2 4.4E-06 40.3 14.6 143 6-153 51-207 (209)
50 cd00177 START Lipid-binding ST 96.4 0.31 6.8E-06 37.3 17.0 142 4-150 39-190 (193)
51 cd08870 START_STARD2_7-like Li 96.2 0.48 1E-05 38.0 16.3 144 5-153 51-207 (209)
52 cd08868 START_STARD1_3_like Ch 96.2 0.48 1E-05 37.8 15.7 145 6-154 50-207 (208)
53 cd08863 SRPBCC_DUF1857 DUF1857 96.2 0.4 8.6E-06 36.7 16.0 91 15-125 18-109 (141)
54 PF08982 DUF1857: Domain of un 96.1 0.3 6.6E-06 37.6 12.7 99 6-124 2-108 (149)
55 cd08914 START_STARD15-like Lip 96.0 0.4 8.7E-06 39.7 14.1 116 4-123 78-205 (236)
56 cd08906 START_STARD3-like Chol 95.8 0.78 1.7E-05 37.0 16.5 142 5-153 50-207 (209)
57 COG4276 Uncharacterized conser 95.8 0.6 1.3E-05 35.6 14.6 139 4-152 2-146 (153)
58 cd08871 START_STARD10-like Lip 95.4 1.2 2.5E-05 36.0 16.5 147 6-157 49-205 (222)
59 cd08911 START_STARD7-like Lipi 95.1 1.4 3E-05 35.4 15.7 144 5-153 46-205 (207)
60 cd08869 START_RhoGAP C-termina 94.4 2.1 4.6E-05 34.1 13.2 118 6-128 46-172 (197)
61 smart00234 START in StAR and p 94.2 2.1 4.6E-05 33.5 17.2 145 5-154 46-202 (206)
62 PF10698 DUF2505: Protein of u 94.2 2 4.3E-05 33.0 14.5 107 7-124 2-128 (159)
63 cd08910 START_STARD2-like Lipi 93.5 3.1 6.7E-05 33.4 12.7 141 5-153 50-205 (207)
64 cd08867 START_STARD4_5_6-like 93.2 3.5 7.6E-05 32.8 15.9 141 6-152 48-205 (206)
65 cd08872 START_STARD11-like Cer 92.4 5.3 0.00012 32.9 14.4 144 5-156 53-228 (235)
66 cd08908 START_STARD12-like C-t 88.1 12 0.00027 30.2 12.3 118 4-128 52-179 (204)
67 KOG3177 Oligoketide cyclase/li 87.4 3.3 7.2E-05 33.8 7.3 103 11-125 75-182 (227)
68 PF01852 START: START domain; 78.3 29 0.00063 26.9 17.6 146 4-156 46-204 (206)
69 cd08902 START_STARD4-like Lipi 72.3 51 0.0011 26.8 14.0 137 6-152 49-201 (202)
70 PF11485 DUF3211: Protein of u 65.4 35 0.00077 25.9 6.7 40 6-48 3-42 (136)
71 cd08904 START_STARD6-like Lipi 62.1 82 0.0018 25.3 15.0 137 6-150 48-201 (204)
72 PRK06628 lipid A biosynthesis 50.6 28 0.00061 29.2 4.5 44 116-159 238-281 (290)
73 PF02021 UPF0102: Uncharacteri 47.5 95 0.002 21.6 6.1 66 83-156 14-79 (93)
74 PRK06553 lipid A biosynthesis 44.1 37 0.00079 28.8 4.2 44 116-159 257-300 (308)
75 TIGR02208 lipid_A_msbB lipid A 43.7 42 0.0009 28.3 4.5 39 117-159 249-287 (305)
76 PRK05645 lipid A biosynthesis 40.6 50 0.0011 27.6 4.5 40 116-159 238-277 (295)
77 PRK06860 lipid A biosynthesis 36.4 63 0.0014 27.3 4.5 40 116-159 251-290 (309)
78 PRK14681 hypothetical protein; 36.0 1.5E+02 0.0033 23.0 6.2 69 82-157 60-128 (158)
79 PRK08733 lipid A biosynthesis 34.2 71 0.0015 27.0 4.4 40 116-159 248-287 (306)
80 PRK08419 lipid A biosynthesis 34.1 81 0.0017 26.4 4.7 23 137-159 259-281 (298)
81 PRK08734 lipid A biosynthesis 32.8 76 0.0017 26.8 4.4 22 138-159 257-278 (305)
82 PRK08706 lipid A biosynthesis 32.4 74 0.0016 26.5 4.2 40 116-159 232-271 (289)
83 PRK08943 lipid A biosynthesis 32.3 80 0.0017 26.7 4.5 40 116-159 257-296 (314)
84 COG4396 Mu-like prophage host- 30.7 60 0.0013 25.0 3.0 29 135-165 57-85 (170)
85 TIGR02207 lipid_A_htrB lipid A 30.6 89 0.0019 26.2 4.5 40 116-159 245-284 (303)
86 PF11687 DUF3284: Domain of un 28.8 2.3E+02 0.005 20.5 10.9 99 8-125 3-104 (120)
87 PRK05646 lipid A biosynthesis 28.5 99 0.0021 26.1 4.4 40 116-159 249-288 (310)
88 PRK14680 hypothetical protein; 27.6 2E+02 0.0044 21.6 5.5 67 83-157 24-90 (134)
89 cd00222 CollagenBindB Collagen 27.6 82 0.0018 25.1 3.5 73 12-92 3-75 (187)
90 PRK07920 lipid A biosynthesis 26.4 1.1E+02 0.0024 25.6 4.3 39 117-159 236-274 (298)
91 PRK14688 hypothetical protein; 26.3 2E+02 0.0044 21.1 5.2 66 83-156 24-89 (121)
92 PF03279 Lip_A_acyltrans: Bact 25.0 2.5E+02 0.0054 23.2 6.2 41 115-159 246-286 (295)
93 cd07984 LPLAT_LABLAT-like Lyso 23.7 1.4E+02 0.0031 22.5 4.2 23 137-159 162-184 (192)
94 cd08909 START_STARD13-like C-t 23.4 4E+02 0.0086 21.5 12.4 119 4-127 52-179 (205)
95 PRK12497 hypothetical protein; 23.3 2.5E+02 0.0054 20.4 5.2 67 83-157 24-90 (119)
96 KOG0301 Phospholipase A2-activ 23.2 2.9E+02 0.0062 26.7 6.6 73 5-86 148-227 (745)
97 PRK06946 lipid A biosynthesis 23.0 1.5E+02 0.0032 24.8 4.4 21 139-159 255-275 (293)
98 COG2122 Uncharacterized conser 22.3 1.4E+02 0.0031 24.8 4.0 33 131-163 31-63 (256)
99 PRK14684 hypothetical protein; 22.1 3E+02 0.0066 20.2 5.4 67 83-157 24-90 (120)
100 PF05952 ComX: Bacillus compet 21.5 36 0.00078 22.0 0.3 19 145-163 2-20 (57)
101 cd00680 RHO_alpha_C C-terminal 20.8 3.5E+02 0.0075 19.8 9.5 111 9-123 4-122 (188)
102 cd05845 Ig2_L1-CAM_like Second 20.7 3.1E+02 0.0067 19.2 5.2 43 31-76 2-47 (95)
103 cd02853 MTHase_N_term Maltooli 20.5 2.6E+02 0.0057 18.5 4.6 60 31-99 12-71 (85)
104 PRK14686 hypothetical protein; 20.0 3.4E+02 0.0074 19.8 5.3 66 83-156 23-88 (119)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=6.3e-42 Score=264.56 Aligned_cols=150 Identities=37% Similarity=0.588 Sum_probs=137.3
Q ss_pred CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCc-eEEEEEeecCceeeeeeEEEeeeecCc
Q 044703 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAG-SIRQINVVEGNQVKCSKNRVDALDLEN 79 (179)
Q Consensus 1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~G-svR~~~~~~g~~~~~~kErl~~~D~~~ 79 (179)
|++++++.|+++++||+++|++++ +.++++|+++|+.|++|+++||||++| |||.|+|.+|++..++|||++.+|++|
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 999999999999999999999997 788889999999999999999998877 999999999999899999999999999
Q ss_pred ceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703 80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155 (179)
Q Consensus 80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n 155 (179)
++++|+++|||++. .|++|.+++++.|.++|+|+++|+++|+++++..++|+ ...+++.+|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~---~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPE---KYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcH---HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999987 49999999999999999999999999999988764444 23457999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=1.5e-35 Score=227.66 Aligned_cols=146 Identities=39% Similarity=0.585 Sum_probs=127.9
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCccc-ccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLI-PKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~ll-p~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
++++.+++|+||||+||++++ ||...+ +.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 478999999999999999997 998424 45666 899999999999999999999998877779999999999999999
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ 154 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~ 154 (179)
+|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+ ..++.+..+++++++|++.
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEE---EIKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHH---HHHhHHHHHHHHHHHHHhc
Confidence 99999999875469999999999999888999999999999987644444 2345888889999998875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.80 E-value=7.8e-18 Score=124.41 Aligned_cols=138 Identities=23% Similarity=0.331 Sum_probs=113.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
.++.+++|++|+++||+++. |+.+ +++|+|. ++++++++++.++|+++.+.+..|. .+++++..+|+.++++.|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEE
Confidence 46788999999999999997 9999 8999996 8888887765468999999987663 688999999998789999
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl 152 (179)
++.+|+. ++.++.++++++|.++|+|.++|+..|++.+. .+.+.......+.....++.|++++
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998743 37788999999999887899999999999865 2333333445566777788887775
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.70 E-value=6.8e-15 Score=108.64 Aligned_cols=108 Identities=25% Similarity=0.451 Sum_probs=88.5
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703 3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
+.+++.++.|++||++||+++. |+.+ +++|+|+ +.++++++++ ++|..+.++.... ..+++++..+|++++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEE
Confidence 4678899999999999999997 9999 9999995 8899987633 4465566664331 37999999999889999
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~ 123 (179)
.|++. . .++.++..+++++|.++| |.|+|+.+|++
T Consensus 74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 1 247788999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=5.2e-15 Score=111.05 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=98.1
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc----eeeeeeEEEeeeecCcce
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN----QVKCSKNRVDALDLENFS 81 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~----~~~~~kErl~~~D~~~~~ 81 (179)
++.++.|++|+++||+++. |+.+ +|+|+|+ +++++++++.+ .+....+....+. -...+..++.+.++.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 3578999999999999997 9999 9999996 88999887643 1221111100000 012345566667766889
Q ss_pred EEEEEEecCccccceeeEEEEEEeeecCC-CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703 82 YKYSLIEGDVLMDKLEKISYDVKFEPTAD-GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll 153 (179)
+.|++++|+ +..|.++++++|.++ |+|.++|..+|++... .|...+ ...++.+..++++|.+.+.
T Consensus 77 i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998874 678999999999988 6899999999998753 333343 3344567788888877653
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.60 E-value=7e-14 Score=104.66 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=96.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
++.+++|++|+++||+++. |+.+ +|+|+|. .+++.+++++....++.+... .|... .. +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence 4688999999999999997 9999 9999996 455555543222245556665 33322 22 344567887889999
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
..+++.. .+..+.++++++|.++++|.|+|..+|++....+.+...+ +...+.+..++++|-+++
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 9887533 2788899999999987889999999999986544333332 333334556666665554
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.56 E-value=7.8e-13 Score=98.00 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=83.0
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
.+++.++.|+||+++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+.+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 578999999999999999997 9999 9999996 8899986653 3333344455544321111122222 223 6789
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
+|+..+|. +..++.++++++|.++ +|.|+|+.++++..
T Consensus 77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 99998875 3778889999999977 79999999999865
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.54 E-value=7.7e-13 Score=97.35 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=95.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
++.++.|++|+++||+++. |+.+ +++|.|. +.+++.+.++ .++|+...+....++....++++++.+| .++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CCcEEEE
Confidence 3678899999999999997 9999 9999996 6778876543 4678888887664433335788999887 4578899
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
...+|+ + .+..++++.|.++ +|.++|+.+|+...-.......+ ..++..+..+++++.+++
T Consensus 77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 886552 2 3688999999865 79999999999732111111122 223334455555555554
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.54 E-value=2.5e-13 Score=101.70 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=99.2
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEE
Q 044703 7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSL 86 (179)
Q Consensus 7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~i 86 (179)
+.++.|++|++.||+++. |+.+ +|+|+|+ +++++++++++ .+....+...-++....+..++. +++ +++++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 678999999999999997 9999 9999996 88999988764 34445565554432234445544 666 66889998
Q ss_pred EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703 87 IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 87 ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll 153 (179)
++|. ++.+.+++++.|.++|+|.|+|...|++.+.. +...+ ..+.+....+++++++.+.
T Consensus 76 ~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8883 67789999999999889999999999997532 22222 2334466677777776654
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.46 E-value=9.5e-12 Score=92.04 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=81.2
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
+++.++.|+||+++||+++. |+.+ +|+|+|+ ++++++..+..++|+...++...+. .+..++.++++.+ .+++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence 57889999999999999997 9999 9999996 8889876543267876666654332 4677888888654 6777
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~ 123 (179)
+... + ...+..+++++|.++++|.++|+.+|..
T Consensus 75 ~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 7533 2 2345679999998767899999988874
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.7e-11 Score=90.43 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=83.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-ceeeeeeEEEeeeecCcceEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~Y 84 (179)
++.++.|++|+++||+++. |+.+ +|+|+|. +..++... .++|+...+.+..+ +....+.+++.++|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6789999999999999997 9999 8999985 55555321 45777787877543 2334678888888875 58899
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~ 124 (179)
+...++.. ......+++++|.++++|.++|...|...
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 98766532 33466899999987778999999888653
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=2e-11 Score=87.56 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=97.2
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703 7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (179)
Q Consensus 7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~ 85 (179)
+.++.|++|+++||+++. |+.+ +++|.|+ +.++++.++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 568899999999999997 9999 9999996 7888877643 45666666666422 22357788887777 6688999
Q ss_pred EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 044703 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV--LTEEEIKEGKEKSLAMYKVVEN 150 (179)
Q Consensus 86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~--~~~~~~~~~~e~~~~~~k~ie~ 150 (179)
...++.. ..+..++++.+.++++|.++|+.++.+..... ..+...+.+++.+..+++.+++
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 8876642 56889999999976689999999999876532 2222223344445555555544
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.41 E-value=3e-11 Score=92.67 Aligned_cols=116 Identities=12% Similarity=0.172 Sum_probs=83.7
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEe-ecCceeeeeeEEEeeeecCcceE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINV-VEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
..+++++|++||+.||+++. |+.+ +|.|+|. ++++++++.+ .+.|+.-++.. ..|....+..|+ .+|+..+++
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence 46789999999999999997 9999 9999996 8889988754 34453222233 233333333443 378888888
Q ss_pred EEE-EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCH
Q 044703 83 KYS-LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTE 131 (179)
Q Consensus 83 ~Y~-iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~ 131 (179)
.++ ..+| ++....++++|+|.++ ||.|++..+|+..++.+...
T Consensus 77 ~~~~~~~~-----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~ 120 (146)
T cd08860 77 RARRVETG-----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDD 120 (146)
T ss_pred EEEEecCC-----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCCccch
Confidence 874 2222 3888999999999966 59999999999876554433
No 14
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.35 E-value=8.5e-11 Score=86.70 Aligned_cols=126 Identities=21% Similarity=0.337 Sum_probs=87.6
Q ss_pred EcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCc
Q 044703 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91 (179)
Q Consensus 12 i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~ 91 (179)
|+||+++||+++. |+.+ +|.|+|. ++++++++.++. +..-.+....++....+..++.. +.... +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence 6899999999997 9999 9999996 889999887643 33335566554433455666553 44444 888887775
Q ss_pred cccceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703 92 LMDKLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV 148 (179)
Q Consensus 92 ~~~~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i 148 (179)
++.+.++++++|.++ |+|.++++.+|+..+..+.+.... ....+....+++++
T Consensus 74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999975 368888888888876665555443 22233344444444
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.34 E-value=1.3e-10 Score=86.45 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=86.8
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--eeeeeeEEEeeeecCcceE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~ 82 (179)
+++.++.+++|+++||+++. |+.+ +++|+|+ +++++.++++ .... .++...+. ..-..+-++..+|+. +++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPN-EYEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCC-eEEE--EEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence 46889999999999999997 9999 9999996 7777766532 1111 12222121 111224455555544 567
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEI-KEGKEKSLAMYKVVENY 151 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~-~~~~e~~~~~~k~ie~y 151 (179)
.++....+.. ....+..+++++|. +++|.++|+.+|++.+.. ..+...+ +.+++.+..+++.|.++
T Consensus 75 ~~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 75 TITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776543322 25689999999998 668999999999986532 2233333 33333444555555443
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.33 E-value=8.1e-11 Score=86.97 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=92.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~ 85 (179)
++.+++|+||++.||+++. |+.+ +|+|+|+ +..++.....| |+.+.+....++....+..++.++|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 6788999999999999997 9999 9999995 22232211222 666655544332234678888988855 689999
Q ss_pred EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
...++.. +.-....++++.|.+ ++|.++|+.++.+.... ........+.....++..|.+|+.
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 76 WAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred ecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 8876531 134568889999997 57999999999875321 122223344455566666666653
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=5.6e-11 Score=89.03 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=92.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC--CCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD--GGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (179)
++.++.|+||+++||+++. |+.+ +|+|.|.... .....++ -++|+...+.... |++ ..+..++.++++.. .+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EE
Confidence 6788999999999999997 9999 9999985222 2222333 3788888877664 333 34566778777655 68
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl 152 (179)
.|+..-.+. +......+++++|.++|+|.++++..|...+...................+..|++|+
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 888541121 1233567889999887889999999988764311101111122345667777777775
No 18
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=1.8e-10 Score=86.93 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=81.4
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeE---EEE--EcCCCCCceEEEEEeecCceeeeeeEEEeeeecC
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKS---IEI--FEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~s---ve~--~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~ 78 (179)
.+++.++.|++|+++||+++. |+.+ +|+|+|. ... ++. .+++.++|+...++...+. .....++..+++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p- 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP- 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence 368899999999999999997 9999 9999995 332 221 1233468888777765421 133456676764
Q ss_pred cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
++++.|++..++.+ -.++..+++++|. ++||.++|+.+|+...
T Consensus 76 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~-~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 76 NERIEYELRFIKPF---EATNDVEFTLEPV-GGGTKVTWGMSGELPF 118 (150)
T ss_pred CcEEEEEEEecCCc---cccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence 56799998765432 1367899999999 4579999999998654
No 19
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.2e-10 Score=86.12 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=79.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
+++.++.|++|+++||+++. |+.+ +|+|.|+ +++++++.+. +....+....|.. ..+..++...++ ++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEE
Confidence 36889999999999999997 9999 9999996 8888876441 2222233322332 345666665544 556999
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN 126 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~ 126 (179)
....|. + .+.+++.+.|.++++|.+++++.|++...
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 876653 3 46789999998777899999999998753
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=2.6e-10 Score=85.55 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=84.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC---CCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD---GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd---g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
++.++.|++|+++||+.+. |..+ +|+|+|+ +.++++++.+ ..+|+.-.+.+..++..-.++-++..+++ ++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence 4678999999999999997 9999 9999997 7788887433 24678888887765422245666666654 5578
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~ 123 (179)
+...+.|. +..+..++.+.|.++ ||.++++++|+.
T Consensus 77 ~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 77 VDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 88887764 666788899999876 799999999997
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=1.1e-09 Score=82.88 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=77.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEc--CCCCCceEEEEEeecC-ceeeeeeEEEeeeecCcceE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFE--GDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~e--Gdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~ 82 (179)
++.+..|++|+++||+++. |+.. +|+|+|+ ++++++++ ++.++|+.-++..... +....+.-++.+.| ..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence 4667899999999999997 9999 9999996 88998886 3346777655543322 21123445555544 55678
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
.++. +|+. . ...+++|.|.++ ||.|+++.+++...
T Consensus 79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8885 5642 2 268899999755 79999999999743
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.22 E-value=8.2e-10 Score=85.91 Aligned_cols=135 Identities=17% Similarity=0.256 Sum_probs=96.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (179)
-.+..++.|++|++++|+++. |..+ +|+|+|. .+++++++.++. +.+..++.+-++-...+..|.. +++.+ ++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 367888999999999999997 9999 9999996 778888765432 3344455544433345666655 45444 799
Q ss_pred EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY 151 (179)
Q Consensus 84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y 151 (179)
+.+++|+ ++.+.+.|++.|.++++|.|++..+|+.... .....+ ....+.+..|.+++++.
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~R 150 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTVR 150 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999884 7889999999999877899999999996532 222122 23344556666666654
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.16 E-value=3.5e-09 Score=80.20 Aligned_cols=139 Identities=18% Similarity=0.232 Sum_probs=84.7
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeee--eEEEeeeecCcceEEE
Q 044703 7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCS--KNRVDALDLENFSYKY 84 (179)
Q Consensus 7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~Y 84 (179)
+.+++|++||++||+++. |... ++.|.|+ +++++.. |++. ..-.+++..|+-...+ +=++..++++.+++.+
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 568899999999999997 9999 8999997 7777654 2222 2223344333211122 2245556657778887
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
+.-..+....+--....++++.| .+++|.++|.++++..+.. ......+ +.+++.+..+++.|.+.+
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 76432111111224677888888 4568999999999876532 2222223 333445556666666554
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.91 E-value=6.4e-08 Score=74.19 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=97.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--eeeeeeEEEeeeecCcceEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~~ 83 (179)
++-+..|++|+++||+.+. |... +..-+|+ ++|++. +||. ..-.+.+.-|. ..-..+=++..+|+..++++
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~-~g~e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVET-NGDE---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeee-cCCe---EEEEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence 5678899999999999996 9999 7789997 999984 4552 22223333331 11123556677789999998
Q ss_pred EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYLMQ 154 (179)
Q Consensus 84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yll~ 154 (179)
.+.-+|..- .+-+.++.+++.|.+++ |.+.|.+.-+-.+. ...-.+.+ ..+++.+..+++.|.++|-+
T Consensus 76 i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 76 INGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred EEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888664433 47888999999999876 99999988776553 22223333 34555677888888887754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.81 E-value=3.8e-07 Score=69.06 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=82.5
Q ss_pred EEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc-e-eeeeeEEEeeeecCcceEEEEE
Q 044703 9 EYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN-Q-VKCSKNRVDALDLENFSYKYSL 86 (179)
Q Consensus 9 ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~-~-~~~~kErl~~~D~~~~~~~Y~i 86 (179)
+.+|++|+++||+++. |... +-..+|+ +++++.+. +.--+. ++..-|. + .-..+=++..+|+.++.. .++
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 5789999999999997 9999 7799997 88888765 411111 2222221 1 112344566677777653 444
Q ss_pred EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 87 IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 87 ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
-..+... -.+..+.+++...++++|.+.|+++++-.+- .......+ ..+++.+..+++.+++.|
T Consensus 74 ~g~g~~~--~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 74 EGRGRGG--GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEEECTC--CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCcc--ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333322 4456677777776666799999999998764 33334444 344456667777777654
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=3.9e-07 Score=70.13 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=93.5
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (179)
.+++.++.|++|+++||+++. |+.. ++.|.|.. ..+-.+|...++.+...+. .....++.++|+. +.+.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~ 79 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALT-DPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLA 79 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCCC-------CCCcccCceEEEEecCCCC-CccceEEEEEcCC-cEEE
Confidence 568899999999999999997 9999 99999842 1233456555565543211 2456677777666 4778
Q ss_pred EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccccce
Q 044703 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLE 163 (179)
Q Consensus 84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~~~~ 163 (179)
|+...++ .....+++|++.+ ++|.++.+.++.+... ......+.-..++..|.+|+.+.+=..+-.-
T Consensus 80 ~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~~~~~~~~ 146 (157)
T cd08899 80 FTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGPPAPFWDA 146 (157)
T ss_pred EEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCCCCCcccc
Confidence 8875443 1235678888865 5799888877765331 1122345677888999999998775555554
Q ss_pred ecc
Q 044703 164 FSS 166 (179)
Q Consensus 164 ~~~ 166 (179)
|-+
T Consensus 147 ~~~ 149 (157)
T cd08899 147 FAQ 149 (157)
T ss_pred chh
Confidence 444
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.68 E-value=6.1e-07 Score=66.84 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
+++.++.|+||+++||+++. |... +++|+|... .....|.+..| .+.+.++. .....-++..+++.. .+.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p~~-~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDPPR-RFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCccee---EEecCCCC-ccceEEEEEEeCCCc-EEEE
Confidence 57889999999999999997 9999 899998632 11111222222 23333221 013445666665544 6777
Q ss_pred EEEecCc---cc-cceeeEEEEEEeeecCCCCceEEEEEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 85 SLIEGDV---LM-DKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 85 ~iieG~~---~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
+...... .. ..-.....+++++|.+ ++|.|+++.. |...++.. .........+.-..++..|++||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhc
Confidence 7643320 00 0122356889999986 4699999876 43221110 011222344566778888888875
No 28
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.54 E-value=1.9e-05 Score=62.39 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=89.5
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeeecCcc
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENF 80 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~ 80 (179)
..+..+..|++||+++|+++. |.+. .|+|.|. +.++++++..+.--.+-.+.+....+ -..+-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 567788889999999999997 9998 9999995 88999887653212233333332211 1122211112222234
Q ss_pred eEEEEEEecCc--cc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044703 81 SYKYSLIEGDV--LM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYL 152 (179)
Q Consensus 81 ~~~Y~iieG~~--~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yl 152 (179)
.+...+..++. +. .. ...+.+.+.++|.++++|.+++...+++.+. .|.-.++ .++.....+++++++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444443322 11 01 4667788999999888999999998888753 3343443 34445667888877654
No 29
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.51 E-value=1.4e-06 Score=68.80 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=85.2
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (179)
..++.+++|+.|++.||...+ |+.+ +|.||. ++.||++.+... -+|+... ++..-++.-+|. -|.++..|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mk-hl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I 140 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMK-HLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI 140 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHH-hhceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence 568899999999999999997 9999 999998 599999886542 4566543 433234555655 57899999
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN 126 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~ 126 (179)
.+.=++|.-++. .+.++|.+..++.|.|+.+.+|.+-++
T Consensus 141 ~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 999999964432 467899998877889999999997554
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.51 E-value=5.5e-06 Score=60.87 Aligned_cols=134 Identities=14% Similarity=0.038 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
+++.++.|+|||++||+++. |... ++.|.++.. .+++-.+|..-.+.....+. ..+.=++.+++ .++.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence 46789999999999999997 9999 899998621 12333444433344333111 13444666676 5556777
Q ss_pred EEEecCccc-cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 85 SLIEGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 85 ~iieG~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
+...++... ..-.....++.++|.++ +|.++.+.+-.+.+ +...+...+....+++.|.++|.
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 764333210 01234677888888754 67666665543221 12223445567778888888874
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=1.4e-05 Score=59.97 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=77.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccC-cceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMP-QAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P-~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (179)
++.+..|+||+++||+++. |... +.+|++ +.+. +...+.|..+|..-.+.+. +++..-...=++.++++.. ++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 4667899999999999996 9888 778764 3232 2112333344444344342 2232112234677776655 677
Q ss_pred EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHH-HHHHHHHHHHHHHHHHHHHh
Q 044703 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEE-IKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~-~~~~~e~~~~~~k~ie~yll 153 (179)
|+...++. . ...+++++|.+ ++|.++.+..|...... ... .....+....++..|++||.
T Consensus 78 ~t~~~~~~----~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~~---~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGPP----R--FRLTVTFEEQG-GKTRLTWRQVFPTAAER---CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCCC----c--EEEEEEEEECC-CCEEEEEEEEcCCHHHH---HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 87643311 2 45788999975 67998888764311000 000 11233456677788888763
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=5.8e-05 Score=57.00 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=79.2
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeEEEEEcCCCCCceEEEEEe--ec------CceeeeeeEEEeee
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINV--VE------GNQVKCSKNRVDAL 75 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~-~v~sve~~eGdg~~GsvR~~~~--~~------g~~~~~~kErl~~~ 75 (179)
+++.+..|+||+++||+++. |... +.+|.+. .+ .+.+.+.|-.+|..-.+.+ .+ .+......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 35677889999999999997 9998 7888763 22 2222233333443333332 22 11112334467777
Q ss_pred ecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 76 DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 76 D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
++.+ ++.|+..-.+... + .....++.+++.+ ++|.++++...-+.. .. .....+.-..++..|++||.
T Consensus 78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~---~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IP---PEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch---hh---hhHHHHHHHHHHHHHHHHhc
Confidence 7665 6667643222111 1 2346889998885 578888887642211 11 11344567778888888874
No 33
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.36 E-value=7.3e-05 Score=56.18 Aligned_cols=137 Identities=20% Similarity=0.151 Sum_probs=79.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~-~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (179)
+..+..++||+++||+++. |... +.+|+.+ .--.++..+.|-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence 4566789999999999997 9888 7788753 11122333344344544444443 2332223344666676555 566
Q ss_pred EEE--EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 84 YSL--IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 84 Y~i--ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
|+- -.++.. ......++.+.|.+ |+|.++.+..+-..++.. ......+.-..++..|++||.
T Consensus 79 ~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~----~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGDD----DPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEecccccc----hhhhHHHHHHHHHHHHHHHHh
Confidence 664 222221 12245788888985 579998887763222211 112234466677788888774
No 34
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.36 E-value=3.1e-05 Score=58.41 Aligned_cols=138 Identities=14% Similarity=0.031 Sum_probs=81.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
++.+..++||+++||+++- |... +.+|+...--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.. ++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 5667899999999999996 9888 777776432223333445445555455543 2322223344666676654 4555
Q ss_pred EEE-ecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 85 SLI-EGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 85 ~ii-eG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
+-- ++.. -.....++++.|.+ |+|.++.+..|..... ..........+.-...+..|++||.
T Consensus 79 t~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 532 2221 12246788999975 6799988766532110 0001112345567788888988885
No 35
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.25 E-value=2.2e-05 Score=60.08 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=84.0
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (179)
-+++.+.-++.+|+++|+++. |... .|+.+|- -.+..+.+.++ ..-+-.++.+-++--++..=|+. +++..+++.
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 357788899999999999997 9999 9999996 55666676653 22444455543332234455544 556666777
Q ss_pred EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
-++++|+ ++...++|+++|-++++|.|+..++|+...
T Consensus 77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 7778774 888899999999878899999999999865
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.23 E-value=6e-05 Score=56.04 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeE--EEEEcCCCCCceEEEEEee--cCceeeeeeEEEeeeecCcc
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKS--IEIFEGDGGAGSIRQINVV--EGNQVKCSKNRVDALDLENF 80 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~s--ve~~eGdg~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~ 80 (179)
|++.++.++||+++||+++. |... +.+|+++ ... +...+.|-.+|..-.+.+. +|.....+.=++.++++. +
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-K 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-C
Confidence 46788999999999999996 9888 8899643 111 1112234345544444432 222111233455666554 4
Q ss_pred eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
++.|+..++ ...+++++|.+ ++|.++.+ +.+.+.. ..+ ...+.-..++..|++||.
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~~~---~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN--PVE---MQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC--cHH---HHHHHHHHHHHHHHHHhh
Confidence 788886322 25689999975 57888765 4433211 111 234566778888888874
No 37
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.20 E-value=9.1e-05 Score=55.93 Aligned_cols=139 Identities=10% Similarity=0.019 Sum_probs=76.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEe-ecCceeeeeeEEEeeeecCcceEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINV-VEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
+..++.|+||+++||+++. |... +.+|++..=-++...+.|-.+|..-++.+ .+++..-...=++.++|+.+ ++.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence 4567899999999999996 9888 77776531001111223323333334444 23332122345677787665 5666
Q ss_pred E--EEec-CccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703 85 S--LIEG-DVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 85 ~--iieG-~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll 153 (179)
+ ..++ ++...+ ....+++++|.+ ++|.++.+..+.... ..+... ....+.-..++..|++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5 3222 111111 135689999975 578888775542110 000011 0123567788888888875
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.18 E-value=0.00013 Score=55.34 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=74.7
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcce-------eEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecC
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAV-------KSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE 78 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v-------~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~ 78 (179)
++.++.|+||+++||+++. | . +.+|++..- ..|++ |-.+|..-.+...+|. ....=++.++|+.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~~~~~~g~--~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWYEIGEDGT--ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEE---cccCCcEEEEecCCCc--EeceEEEEEEcCC
Confidence 6788999999999999997 7 4 556654321 22332 1123322222222232 1233467777766
Q ss_pred cceEEEEEE-ecCccc-cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703 79 NFSYKYSLI-EGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV-LTEEEIKEGKEKSLAMYKVVENYLM 153 (179)
Q Consensus 79 ~~~~~Y~ii-eG~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~-~~~~~~~~~~e~~~~~~k~ie~yll 153 (179)
+ ++.|+-. ..+... ... .-..+++++|.++++|.++.+...-...... ..........+.-..++..|++||-
T Consensus 73 ~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 73 S-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred C-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 5 5666643 211110 011 2367899999864679998887765432110 1111111223455677888888874
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.08 E-value=0.00025 Score=51.16 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=71.8
Q ss_pred cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCcc
Q 044703 13 PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVL 92 (179)
Q Consensus 13 ~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~~ 92 (179)
+||+++||+++. |... +.+|.+..... .+-.+|..-++ ...++......=++.++++.. .+.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~-----~~~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAE-----MDFRPGGSFRF-MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEE-----EECSTTEEEEE-EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCcce-----eeeecCCEEEE-EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence 699999999997 9988 78993311222 22234443333 224333223343577787666 477775433322
Q ss_pred ccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHH-HHHHHHHHHHHHHHHH
Q 044703 93 MDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKE-GKEKSLAMYKVVENYL 152 (179)
Q Consensus 93 ~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-~~e~~~~~~k~ie~yl 152 (179)
. -.....++.+.+ .+++|.++.+.+=. +.....+. .......++..|.+||
T Consensus 72 ~--~~~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 D--GPESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--CEEEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 234578899999 45678888776222 12222222 5567777888888887
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0006 Score=52.22 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=75.5
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703 3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (179)
Q Consensus 3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (179)
..+++.+..|++|+++||+++. |... +.+|+.+-=.+.++.-| .|....+...+|. .....-++.++++.. ++
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g~-~~~~~~~~~~v~p~~-rI 79 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTG---GGERVRFRGPDGP-VHSFEGEYLEVVPPE-RI 79 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecC---CceEEeeecCCCC-eeecceEEEEEcCCc-EE
Confidence 3678889999999999999997 9887 88888621101111111 1223334433332 223455666665554 45
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHH--HHHHHHHHHHHHHHHh
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEG--KEKSLAMYKVVENYLM 153 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~--~e~~~~~~k~ie~yll 153 (179)
.|+-...+.-. +...-..+++++|..+|+ +++..........+.....+.. .+.-..++..++++|.
T Consensus 80 v~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 80 VFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 55543332211 123346788888876664 3333333333322222211111 4566777777777764
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.75 E-value=0.00071 Score=50.52 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=76.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~ 85 (179)
++.++.|+||+++||+++. |... +.+|.+. -.+.++ .+|..-.+.+...++ .+.=++.++++. +.+.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~-----~~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRL-----EEGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCccc-----cCCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence 4678899999999999996 9888 7776543 223332 233333455543322 222356667544 577787
Q ss_pred EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH---HHHHHHHHHHHHHHHHHhcC
Q 044703 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK---EGKEKSLAMYKVVENYLMQN 155 (179)
Q Consensus 86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~---~~~e~~~~~~k~ie~yll~n 155 (179)
-..++ +. -..++++.+.++|+|.++.+-..-+.. .++..+ ...+.-..++..|++||...
T Consensus 71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 64322 12 347889999865678888775533211 111111 11234567788888888654
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.60 E-value=0.0047 Score=45.54 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=69.1
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~ 85 (179)
++.+..|+||+++||+++- |... +.+|+.. ..+.+...| |..+ +.+|. +.=++.++++. +.+.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~-~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPG-KKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCC-CEEEEE
Confidence 5678899999999999996 9888 7788753 223332222 3333 33332 23356667644 456665
Q ss_pred EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHH-HHHHHHHHHH
Q 044703 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSL-AMYKVVENYL 152 (179)
Q Consensus 86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~-~~~k~ie~yl 152 (179)
---.+... -..-..++.+++. +++|.++.+....+.. . .+...+.-. .++..|.++|
T Consensus 67 w~~~~~~~--~~~s~v~~~l~~~-~~gT~ltl~~~g~~~~------~-~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSWPE--GHYSTVTLTFTEK-DDETELKLTQTGVPAG------E-EERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCCCC--CCcEEEEEEEEEC-CCCEEEEEEEECCCCc------h-HHHHHhhHHHHHHHHHHHHh
Confidence 43222110 1224578888887 4578877776644321 1 112233333 4667777665
No 43
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.42 E-value=0.021 Score=47.32 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=87.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCC-CCceEEEEEeec---CceeeeeeEEEee--eecC
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVVE---GNQVKCSKNRVDA--LDLE 78 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg-~~GsvR~~~~~~---g~~~~~~kErl~~--~D~~ 78 (179)
.+..+..+++|++++|+++. |... -++|.+. ..++++++.-+ ..+ +-.+.+.. -.+-..+.-+-.. .+..
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred EEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 46777889999999999997 9999 8999984 88999887322 223 22333221 1111111111111 1222
Q ss_pred c-ceEEEEEEe-cCc-cc---cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703 79 N-FSYKYSLIE-GDV-LM---DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 79 ~-~~~~Y~iie-G~~-~~---~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl 152 (179)
+ ..+..+-+. .-. .. .....+.+-+.+.|.++|+|.|+.....+|.--.=.. ..+..+-..+...|++-++||
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVT-CNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceee-ecchhhhHHHHHHHHHHHHHh
Confidence 2 222333233 111 10 1256778999999998889999999888874311011 122234456778889999998
Q ss_pred hcC
Q 044703 153 MQN 155 (179)
Q Consensus 153 l~n 155 (179)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 765
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.39 E-value=0.0026 Score=47.60 Aligned_cols=123 Identities=12% Similarity=0.155 Sum_probs=64.6
Q ss_pred EcCCHHHHHHHhhhccCcccccc-cCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecC
Q 044703 12 SPISPARLFKALIVDSHNLIPKL-MPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90 (179)
Q Consensus 12 i~apa~kvW~~~~~d~~~llp~~-~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~ 90 (179)
++||+++||+++- |... +.+| .+. ...++. .+|..-. +-.+. +.=++.++|+.. ++.|+---.+
T Consensus 1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~-~~~~d~-----~~GG~f~--~~~~~----~~G~~~ev~pp~-rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYT-LTRLSLGS-PAEMDA-----KVGGKFS--LFNGS----VEGEFTELEKPK-KIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHc-CHHH-HHHHhcCC-CccccC-----CcCCEEE--EecCc----eEEEEEEEcCCC-EEEEEEecCC
Confidence 4799999999996 9887 7777 431 212221 2333222 22221 223566676665 4444432121
Q ss_pred ccccceeeEEEEEEeeecCCCCceEEEEEE-EEEcCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 044703 91 VLMDKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNIVLTEEEIKEGKEKSLA-MYKVVENYL 152 (179)
Q Consensus 91 ~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~e~~~~-~~k~ie~yl 152 (179)
..+... -..|++++|.++|+|.++.+.. +........ ....+...+.-.. ++..|++||
T Consensus 66 ~~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~-~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 66 WEEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGN-GGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCC-CchhhHHHhChHHHHHHHHHHHh
Confidence 111112 2588999997667888888877 432221110 0001122344455 688888876
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.20 E-value=0.038 Score=44.74 Aligned_cols=121 Identities=12% Similarity=-0.054 Sum_probs=72.8
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-c--C--ceeeeeeEEEeeeecCcc
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-E--G--NQVKCSKNRVDALDLENF 80 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~--g--~~~~~~kErl~~~D~~~~ 80 (179)
+..+.++++|++++|+++. |... .++|.+ .++++++++.-+.--.+-.+.+. + . .+-..+.-+-...++.+.
T Consensus 47 ~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 4467789999999999997 9999 899998 69999998753211133333322 1 1 111122222111222332
Q ss_pred eEEEEEEec-Cccc-----cceeeEEEEEEeeec---CCCCceEEEEEEEEEcCCCCC
Q 044703 81 SYKYSLIEG-DVLM-----DKLEKISYDVKFEPT---ADGGSKNTMTSTYYTKGNIVL 129 (179)
Q Consensus 81 ~~~Y~iieG-~~~~-----~~~~~y~~ti~v~p~---~~g~s~v~W~~~ye~~~~~~~ 129 (179)
.+.-+-+.- ..+. .....+.+-+.++|. ++|.|.++..+..+|.+++-|
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 232222222 1111 124567788999998 777899999999999855444
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.95 E-value=0.089 Score=42.32 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=83.4
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec----Cceeeeee-EEEeeeecC
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE----GNQVKCSK-NRVDALDLE 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~----g~~~~~~k-Erl~~~D~~ 78 (179)
..+..+..|++|++.+.+++. |.+. .|+|.|. ..+.+.++..+..-.+-.+.+.. ....-.+. -.++.+| +
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~ 121 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-E 121 (215)
T ss_pred EEEEEEEEecCChhHeEEEEe-hhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-c
Confidence 456778899999999999997 9977 9999996 44555554332111222222210 11100111 1122232 3
Q ss_pred cceEEEEE--EecC----------ccccc-----eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHH
Q 044703 79 NFSYKYSL--IEGD----------VLMDK-----LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEK 140 (179)
Q Consensus 79 ~~~~~Y~i--ieG~----------~~~~~-----~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~ 140 (179)
+..+.... +..+ ++..+ ...+.+-+.++|.++++|.+++.+..+|.+..-| .-.+ ..+++.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP-~~liN~~~k~~ 200 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVP-KSLLNFVARKF 200 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCC-HHHHHHHHHHH
Confidence 33332221 1110 11111 3667788899999888999999988887766233 3333 345566
Q ss_pred HHHHHHHHHHHHh
Q 044703 141 SLAMYKVVENYLM 153 (179)
Q Consensus 141 ~~~~~k~ie~yll 153 (179)
+-.++++|.+-+.
T Consensus 201 ~~~~~~~l~k~~~ 213 (215)
T cd08877 201 AGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 7788888776553
No 47
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.70 E-value=0.24 Score=39.89 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=78.8
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCc-ccccccCcceeEEEEEcCC-CCCceEEEEEee-c-Cc---eeeee-eEEEeeeec
Q 044703 6 VTDEYTSPISPARLFKALIVDSHN-LIPKLMPQAVKSIEIFEGD-GGAGSIRQINVV-E-GN---QVKCS-KNRVDALDL 77 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~-llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~-~-g~---~~~~~-kErl~~~D~ 77 (179)
+..+..++++++++++.+. |..+ .-++|.+. +.++++++.- +.. .|-.+... + ++ +-..+ .......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCC
Confidence 5677889999999999996 7754 12799984 8888887643 221 22222222 1 11 00111 112122333
Q ss_pred CcceEEEEEEecCccc---cceee----EEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703 78 ENFSYKYSLIEGDVLM---DKLEK----ISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE 149 (179)
Q Consensus 78 ~~~~~~Y~iieG~~~~---~~~~~----y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie 149 (179)
....+.+..++-+-.+ ..+.- ....++..|.++++|.++|.+..+|++..| .-.+ ..+.+....+++.+.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP--QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC--HHHHHHHhhHHHHHHHHHHH
Confidence 3333344333332211 11111 234555556566789999999999876543 3333 334456677888887
Q ss_pred HHHh
Q 044703 150 NYLM 153 (179)
Q Consensus 150 ~yll 153 (179)
.+|.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 7774
No 48
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.65 E-value=0.17 Score=42.04 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecC-cee---eeeeEEEeeeecCc
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEG-NQV---KCSKNRVDALDLEN 79 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g-~~~---~~~kErl~~~D~~~ 79 (179)
.+..+..+++|++++++++. |... .++|.+. +.++++++-- ..- .+..+...+- ++. ..+.-+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 35567789999999999996 9999 9999985 8899987643 222 2554443321 110 11111111111122
Q ss_pred c---eEEEEEEe-cCccc-c---ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHH-HHHHHHHHHH
Q 044703 80 F---SYKYSLIE-GDVLM-D---KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKE-KSLAMYKVVE 149 (179)
Q Consensus 80 ~---~~~Y~iie-G~~~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e-~~~~~~k~ie 149 (179)
. .+..+.+. .+.++ . ...++.+-+.+.|.+++.|.+++...-+| | ..|.-.. ..+.+ .+...+.+-.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHH
Confidence 2 12222222 22211 0 14556788999999888899988665554 3 2333222 22222 3456667777
Q ss_pred HHHhcC
Q 044703 150 NYLMQN 155 (179)
Q Consensus 150 ~yll~n 155 (179)
++|++|
T Consensus 235 ~~~~~~ 240 (240)
T cd08913 235 QFLLDN 240 (240)
T ss_pred HHhhcC
Confidence 777654
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.51 E-value=0.2 Score=40.32 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=81.0
Q ss_pred EEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeec-Cce---eeeeeEEEeeeecCc
Q 044703 6 VTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GNQ---VKCSKNRVDALDLEN 79 (179)
Q Consensus 6 v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~-g~~---~~~~kErl~~~D~~~ 79 (179)
+..+..+++|+++++ .++ .|... .++|.+. +.++++++--+.-=. ++.+.... ++. -..+.-|...-++.+
T Consensus 51 ~k~e~~i~~~~~~l~~~l~-~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELV-DRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEecCCHHHHHHHHH-hchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 456788999999999 666 48888 8999984 778887754321001 22222211 111 011211212222333
Q ss_pred ceEEEEEEecCccc--c---ceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703 80 FSYKYSLIEGDVLM--D---KLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY 151 (179)
Q Consensus 80 ~~~~Y~iieG~~~~--~---~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y 151 (179)
..+.....+-+.++ . ....+.+-+.++|.++ ++|.++|.+-.+|++.. |.-.+ ..+.+.....++.|.++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence 22211112222211 0 1445567788999865 78999999999988763 33333 34456667778887777
Q ss_pred Hh
Q 044703 152 LM 153 (179)
Q Consensus 152 ll 153 (179)
+.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 65
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.36 E-value=0.31 Score=37.27 Aligned_cols=142 Identities=17% Similarity=0.087 Sum_probs=79.2
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCcee---eeeeEEEeeeecCcc
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQV---KCSKNRVDALDLENF 80 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~---~~~kErl~~~D~~~~ 80 (179)
..+..+..+++|++.+|+++. |... .++|-|. +.++++++..+..-.+....+....+. ..+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 345677889999999999997 8777 8899984 888888875432234444444432210 111111111222222
Q ss_pred -eEEEEEEecCccc---ccee--eEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHH
Q 044703 81 -SYKYSLIEGDVLM---DKLE--KISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVEN 150 (179)
Q Consensus 81 -~~~Y~iieG~~~~---~~~~--~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~ 150 (179)
.+...=++.+..+ ..+. .+.+-+.++|.++++|.+++.+..++.+..| .-.+ ..+.+....+.+.+..
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP--~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP--KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc--HHHHHhhhhhccHHHHHHHHH
Confidence 2222222221111 1122 2345677889988899999999999887542 3232 3333444555555443
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.22 E-value=0.48 Score=38.01 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=81.8
Q ss_pred EEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEee-c--CceeeeeeEEEeeee-cC
Q 044703 5 TVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVV-E--GNQVKCSKNRVDALD-LE 78 (179)
Q Consensus 5 ~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~-~--g~~~~~~kErl~~~D-~~ 78 (179)
.+..+.++ ++|++.+++++. |... .++|.+. +.+.++++-++..|+ |-.+.+. + -.+-..+--|-.-.| +.
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 45566677 679999999997 9887 8999985 667777665432121 2222221 1 111012222222223 33
Q ss_pred cceEEEEEEecCccc----cceeeEEEEEEeeec--CCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703 79 NFSYKYSLIEGDVLM----DKLEKISYDVKFEPT--ADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY 151 (179)
Q Consensus 79 ~~~~~Y~iieG~~~~----~~~~~y~~ti~v~p~--~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y 151 (179)
...+....+.-+..+ ..+..|.+.+.++|. ++++|.+.++..-.|.+. .|.-.+ ..++..+.++++.|...
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHH
Confidence 333322222221111 137789999999998 666788888866665433 444443 34455667888888776
Q ss_pred Hh
Q 044703 152 LM 153 (179)
Q Consensus 152 ll 153 (179)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 64
No 52
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.20 E-value=0.48 Score=37.83 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=79.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecC-cee---eeeeEEEeeeecCcc
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEG-NQV---KCSKNRVDALDLENF 80 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g-~~~---~~~kErl~~~D~~~~ 80 (179)
+..+..+++|+++++..+-.|.+. .++|.+. +..+++++.- +.---+........ .+. ..+--|-...++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 556778999999998644348888 8999995 7777776543 21111121221111 110 111112111222222
Q ss_pred eEEEEEEecCccc--c---ceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 81 SYKYSLIEGDVLM--D---KLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 81 ~~~Y~iieG~~~~--~---~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
.+...-++-+-.+ . ....+.+.+.++|.++ ++|.++|.+..+|.+..|. -.+ ..+......+++++..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~--~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQ--YLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcc--eeeehhhHHHHHHHHHHHHHHH
Confidence 2222223311111 1 1344557788888754 5799999999998875432 122 234566778888888877
Q ss_pred hc
Q 044703 153 MQ 154 (179)
Q Consensus 153 l~ 154 (179)
.+
T Consensus 206 ~~ 207 (208)
T cd08868 206 AT 207 (208)
T ss_pred hh
Confidence 53
No 53
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.19 E-value=0.4 Score=36.73 Aligned_cols=91 Identities=16% Similarity=0.259 Sum_probs=57.8
Q ss_pred CHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEe-cCccc
Q 044703 15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIE-GDVLM 93 (179)
Q Consensus 15 pa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iie-G~~~~ 93 (179)
..+++|.-+...... -....| .+.+|++++.++. --.|.++|+.+ .++|++. +++ ..++.|.+-. |+.
T Consensus 18 Tr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~-~~~v~f~~~~~g~~-- 86 (141)
T cd08863 18 TRAQLWRGLVLRARE-PQLFVP-GLDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEP-PSRVHFLQADAGGT-- 86 (141)
T ss_pred CHHHHHhHHHhhhCC-chhccc-ccceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecC-CcEEEEEecCCCCe--
Confidence 356999988744443 224556 5899999977643 46799999875 7999977 444 4477888766 321
Q ss_pred cceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 94 DKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 94 ~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
.++.+....+| -.-.++.|+...
T Consensus 87 -------l~~~iee~~~g--~L~lrf~ye~~~ 109 (141)
T cd08863 87 -------LTNTIEEPEDG--ALYLRFVYETTL 109 (141)
T ss_pred -------EEEEeccCCCC--cEEEEEEEEecC
Confidence 23333333233 366677777743
No 54
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.07 E-value=0.3 Score=37.63 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=52.7
Q ss_pred EEEEEEEcCCH--------HHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeec
Q 044703 6 VTDEYTSPISP--------ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDL 77 (179)
Q Consensus 6 v~~ei~i~apa--------~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~ 77 (179)
+++.+.||-|. ++||+-+..-..+ -..+.| .+.+|++++.. ..+-.|.++| |+ ..++|++.. .+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~f--g~--~~v~E~v~~-~~ 73 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTF--GG--ATVRERVTL-YP 73 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEE--TT--EEEEEEEEE-ET
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEE--CC--cEEEEEEEE-eC
Confidence 45566665554 5799998733333 225667 58999998765 3467899999 33 389999774 44
Q ss_pred CcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703 78 ENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (179)
Q Consensus 78 ~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~ 124 (179)
. .++.|....| ++ -++.+...++ .-+-.++.|+-.
T Consensus 74 ~-~~V~f~~~~G-------s~--lt~~I~e~~~--g~L~ltf~ye~~ 108 (149)
T PF08982_consen 74 P-ERVDFAQHDG-------SS--LTNIISEPEP--GDLFLTFTYEWR 108 (149)
T ss_dssp T-TEEEESSSBE-------EE--EEEEEEEEET--TEEEEEEEEEEE
T ss_pred C-cEEEEEcCCC-------CE--EEEEEecCCC--CcEEEEEEEEec
Confidence 4 4677722111 22 3333333223 266666677764
No 55
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.05 E-value=0.4 Score=39.75 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=66.7
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Ccee-eeee--EEEeeeecC
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQV-KCSK--NRVDALDLE 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~~-~~~k--Erl~~~D~~ 78 (179)
..+..+..+++|++++++++. |... .++|.++ +.++++++.-+.---|..+.-.+ ..+. ..+. -+....++.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 356778899999999999997 9999 9999985 88888876432111255554222 1110 1111 111111122
Q ss_pred c-ceEE-EEEEecCccc-c---ceee-EEEEEEeeecCCCCceEEEEEEEEE
Q 044703 79 N-FSYK-YSLIEGDVLM-D---KLEK-ISYDVKFEPTADGGSKNTMTSTYYT 123 (179)
Q Consensus 79 ~-~~~~-Y~iieG~~~~-~---~~~~-y~~ti~v~p~~~g~s~v~W~~~ye~ 123 (179)
+ ..+. .++..--+++ . .... ..+- .+.|.++++|.|+....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 1 2222 2232201111 1 1334 3344 78899888999999998888
No 56
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.82 E-value=0.78 Score=37.04 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=77.6
Q ss_pred EEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeec-Ccee---eeeeEEEeeeecC
Q 044703 5 TVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GNQV---KCSKNRVDALDLE 78 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~-g~~~---~~~kErl~~~D~~ 78 (179)
.+..+..+++|++++| .++. |... .++|.+. +.++++++.-+.--. ++.++... +++. ..+.-|--.-+..
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 3567788999999998 5786 9999 8999985 888888764321011 12222221 1211 1222222222222
Q ss_pred c-ceEEEEEEecCccccceeeE-------EEEEEeee-cCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703 79 N-FSYKYSLIEGDVLMDKLEKI-------SYDVKFEP-TADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV 148 (179)
Q Consensus 79 ~-~~~~Y~iieG~~~~~~~~~y-------~~ti~v~p-~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i 148 (179)
+ -.+..++. -+..+ +.+.| .+-+-..| .++++|.++|.+..+|.+..| .-.+ ..+.+.....++.+
T Consensus 127 ~~i~~~~sv~-~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP--~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 127 RYVSAGISTT-HSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLP--RYLIHQSLAATMFEFASHL 202 (209)
T ss_pred cEEEEEEEEe-cCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 2 12233332 22211 12222 22333333 456789999999999988533 3232 44555667777777
Q ss_pred HHHHh
Q 044703 149 ENYLM 153 (179)
Q Consensus 149 e~yll 153 (179)
.+++.
T Consensus 203 R~~~~ 207 (209)
T cd08906 203 RQRIR 207 (209)
T ss_pred HHHHh
Confidence 77764
No 57
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.6 Score=35.61 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=83.6
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeec-Cce-eeeeeEEEee--eecC
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVE-GNQ-VKCSKNRVDA--LDLE 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~-g~~-~~~~kErl~~--~D~~ 78 (179)
++......|+||.|.||+..+ ..++ +..+-|..+ |-.-+|+ -+.|+-....+.+ |.+ -..++-|.++ .|+-
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 456677799999999999997 7777 556676522 2222443 2344433333322 222 1356777776 6655
Q ss_pred cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703 79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEIKEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~~~~~e~~~~~~k~ie~yl 152 (179)
. +++-..+.|+... + +...+-++.+.+ |+|++.=++.|+...+. ..--.+ ....-....||+.-+.-+
T Consensus 78 ~-~FtDv~i~gPfp~--~-~WrHtH~F~~eg-g~TvliD~Vsye~p~g~~~~~~g~-~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 S-RFTDVCITGPFPA--L-NWRHTHNFVDEG-GGTVLIDSVSYELPAGTLTGMFGY-RLTQLILDLMFRSRHSTL 146 (153)
T ss_pred c-eeeeeeecCCccc--e-eeEEEeeeecCC-CcEEEEeeEEeeccCcceechhhh-hhHHHHHHHHHHHHHHHH
Confidence 4 5666677776542 2 578888998875 47999999999986541 111111 112224567777655444
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.38 E-value=1.2 Score=36.00 Aligned_cols=147 Identities=10% Similarity=-0.014 Sum_probs=81.6
Q ss_pred EEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeeecCcce
Q 044703 6 VTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENFS 81 (179)
Q Consensus 6 v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~~ 81 (179)
+..+..+ ++|++.+++++. |... .++|.|. +..+++++.-+.--.|..+.+..--+ -..+--|...-++....
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 4455666 799999999996 9877 7899995 66667665432112333333321111 01222222212221112
Q ss_pred EEEEEEecC-ccc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 044703 82 YKYSLIEGD-VLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLMQN 155 (179)
Q Consensus 82 ~~Y~iieG~-~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll~n 155 (179)
+...-++-+ .+. .+ ...+.+-+.++|.++++|.++|.+..++.+.. |.-.+ ..+......++++|...+.+-
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I--P~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL--PKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc--CHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211111111 110 11 23456677889988888999999888887753 33333 333445668888888877776
Q ss_pred cc
Q 044703 156 PE 157 (179)
Q Consensus 156 ~d 157 (179)
++
T Consensus 204 ~~ 205 (222)
T cd08871 204 PE 205 (222)
T ss_pred HH
Confidence 63
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.11 E-value=1.4 Score=35.38 Aligned_cols=144 Identities=11% Similarity=0.019 Sum_probs=80.3
Q ss_pred EEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeecCcee---eeeeEEEeeeecCc
Q 044703 5 TVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVEGNQV---KCSKNRVDALDLEN 79 (179)
Q Consensus 5 ~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~g~~~---~~~kErl~~~D~~~ 79 (179)
.+..+..+ ++|++.+.+++. |... .++|.+. +.++++++.+...|+ +-.+.+.---+. ..+--|-...|+++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 35555556 999999999997 9987 8999985 777888875422222 222222110010 13333333455555
Q ss_pred ceE--EEEEEec-Cccc----cceeeEEEEEEeeecC---CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703 80 FSY--KYSLIEG-DVLM----DKLEKISYDVKFEPTA---DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV 148 (179)
Q Consensus 80 ~~~--~Y~iieG-~~~~----~~~~~y~~ti~v~p~~---~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i 148 (179)
..+ ...-++- ..+. -.+.+|.+.+.++|.+ +++|.+.++.- -.++...|.-.+ ..+.....++++.|
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~--~dPgG~IP~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYF--DNPGVNIPSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEE--eCCCCccCHHHHHHHHHhhccHHHHHH
Confidence 432 1111221 1110 1267889999999874 45777765543 344333444343 33445666777777
Q ss_pred HHHHh
Q 044703 149 ENYLM 153 (179)
Q Consensus 149 e~yll 153 (179)
...++
T Consensus 201 ~~a~~ 205 (207)
T cd08911 201 RNAAL 205 (207)
T ss_pred HHHHh
Confidence 76654
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.37 E-value=2.1 Score=34.05 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=68.1
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Cc-eeeeeeEEEeeeecCc--c
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GN-QVKCSKNRVDALDLEN--F 80 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~-~~~~~kErl~~~D~~~--~ 80 (179)
+..+..+++++++|++.+. |.. ++|.+. +.++++++--+.-=.|-...+.. .. +-..+--|.-..+.++ .
T Consensus 46 ~K~~~~v~a~~~~v~~~l~-d~r---~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL-RER---HLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH-HHH---hccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 4778899999999999886 643 699985 77788776432101122222211 11 1112222222223333 2
Q ss_pred eEEEEEEec--Cccccc--eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC
Q 044703 81 SYKYSLIEG--DVLMDK--LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV 128 (179)
Q Consensus 81 ~~~Y~iieG--~~~~~~--~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~ 128 (179)
.+..+-++- .+++.. ...+.+-+.++|.++++|.+++.+..+|.+..|
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 223332321 111111 345667888999988899999999999987654
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.21 E-value=2.1 Score=33.53 Aligned_cols=145 Identities=17% Similarity=0.017 Sum_probs=82.6
Q ss_pred EEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-cee---eeeeE-EEeeeecC
Q 044703 5 TVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQV---KCSKN-RVDALDLE 78 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-~~~---~~~kE-rl~~~D~~ 78 (179)
.+..+..++++++++. .++. |... .++|.+. +.++++++-...-..|..+....- ++. ..+-- +....++.
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~-d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMD-DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEecChHHHHHHHHh-cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 4566778899999744 5664 8887 8999985 777887754321134555443321 121 11111 11212223
Q ss_pred cceEEEEEEecCccc---c--ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703 79 NFSYKYSLIEGDVLM---D--KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL 152 (179)
Q Consensus 79 ~~~~~Y~iieG~~~~---~--~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl 152 (179)
...+..+-++.+-.+ . -...+.+-+.++|.+++.|.++|....++.+..| .-++ ..+......+++.+-++|
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP--~~lvn~~~~~~~~~~~~~~~~~~ 200 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLP--HWLVRSLIKSGLAEFAKTWVATL 200 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCcc--ceeehhhhhhhHHHHHHHHHHHH
Confidence 333333222222111 0 1346778899999988889999999988887542 2222 334445667777776666
Q ss_pred hc
Q 044703 153 MQ 154 (179)
Q Consensus 153 l~ 154 (179)
..
T Consensus 201 ~~ 202 (206)
T smart00234 201 QK 202 (206)
T ss_pred HH
Confidence 54
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.17 E-value=2 Score=33.00 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred EEEEEEcCCHHHHHHHhhhccCccccc---ccCc---ceeEEEEEcCCCCCceEEEE-Eeec-Cce---------eeeee
Q 044703 7 TDEYTSPISPARLFKALIVDSHNLIPK---LMPQ---AVKSIEIFEGDGGAGSIRQI-NVVE-GNQ---------VKCSK 69 (179)
Q Consensus 7 ~~ei~i~apa~kvW~~~~~d~~~llp~---~~P~---~v~sve~~eGdg~~GsvR~~-~~~~-g~~---------~~~~k 69 (179)
+.++++++|+++||+++. |-.- +.. -+.. .+.+++ .+|+| -+++.- .+.. ..| .-.++
T Consensus 2 ~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred eEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 567899999999999997 5432 222 2211 233333 22332 111111 1111 111 01222
Q ss_pred EEEeee---ecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703 70 NRVDAL---DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (179)
Q Consensus 70 Erl~~~---D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~ 124 (179)
+.+.+ ++..++.+|++--.+. --+..+++.+.|. +++|.+.+..+....
T Consensus 77 -~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 -RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred -EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 22434 6677777777643332 2347899999995 457999999999985
No 63
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=93.54 E-value=3.1 Score=33.40 Aligned_cols=141 Identities=16% Similarity=0.019 Sum_probs=76.9
Q ss_pred EEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-----ceeeeeeEEEeeeecC
Q 044703 5 TVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-----NQVKCSKNRVDALDLE 78 (179)
Q Consensus 5 ~v~~ei~i~-apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-----~~~~~~kErl~~~D~~ 78 (179)
.+..+..++ ++++.+++++. |... .++|.+... ++.-.+.++. .|-.+.+..- ...-..+.+ ...|..
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~~ 123 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQR-RDLDVE 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEe-ccccCC
Confidence 455667787 79999999996 9888 889998644 4321122221 2333333211 001112222 234444
Q ss_pred cceEEE---EEEecCccc-----cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703 79 NFSYKY---SLIEGDVLM-----DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE 149 (179)
Q Consensus 79 ~~~~~Y---~iieG~~~~-----~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie 149 (179)
+..+.. ..++-+-.+ -....|.+.+.++|.++++|.+++...-+|.+. .|.-.+ ..++.....++++|.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHH
Confidence 432211 111111100 126788999999998777888888766666443 333333 344556667777776
Q ss_pred HHHh
Q 044703 150 NYLM 153 (179)
Q Consensus 150 ~yll 153 (179)
..++
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 6553
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.22 E-value=3.5 Score=32.77 Aligned_cols=141 Identities=10% Similarity=-0.021 Sum_probs=76.9
Q ss_pred EEEEEEEcCCHHHHHHHhhhc--cCcccccccCcceeEEEEEcCCCCCceEEEEEeec-Cce----eeee-eEEEeeeec
Q 044703 6 VTDEYTSPISPARLFKALIVD--SHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQ----VKCS-KNRVDALDL 77 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d--~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~----~~~~-kErl~~~D~ 77 (179)
+..+..++++++++.+.+. | ... .++|.+. +.++++++.-+..=.+-...+.. +.+ -..+ .+....+++
T Consensus 48 ~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 48 YRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 6677899999999999996 7 555 6899985 88888887642111222222111 111 0111 111122233
Q ss_pred CcceEEEEEEecCcccccee------eEEEEEEeeecC--CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703 78 ENFSYKYSLIEGDVLMDKLE------KISYDVKFEPTA--DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV 148 (179)
Q Consensus 78 ~~~~~~Y~iieG~~~~~~~~------~y~~ti~v~p~~--~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i 148 (179)
....+...-++-+..+ +.+ .+.+-+-+.|.+ +++|.++|.+..+|.+..| .-.+ ..+.+.....+++|
T Consensus 125 ~~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 125 NQWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP--QSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CeEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc--HHHHHhhhhhhHHHHHHHH
Confidence 2222222223222111 122 233444566654 3579999999999987643 3333 34455667777887
Q ss_pred HHHH
Q 044703 149 ENYL 152 (179)
Q Consensus 149 e~yl 152 (179)
..||
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 7765
No 65
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=92.44 E-value=5.3 Score=32.86 Aligned_cols=144 Identities=8% Similarity=-0.006 Sum_probs=79.3
Q ss_pred EEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC---c-eeeeeeEEEeeeecCc
Q 044703 5 TVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG---N-QVKCSKNRVDALDLEN 79 (179)
Q Consensus 5 ~v~~ei~i~-apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g---~-~~~~~kErl~~~D~~~ 79 (179)
.+..+..++ ++++.+.+++. |... .++|.. .+.+.++++-.+.--.|-...+..= . ..-...-++...|+..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~-~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWET-TLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHh-hhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 356667777 99999999997 9988 889998 4888887754311011122211110 0 0001111222233321
Q ss_pred --------ceEEEEEEecCccccceeeE-EEE-----------------EEeeecCCCCceEEEEEEEEEcCCCCCCHHH
Q 044703 80 --------FSYKYSLIEGDVLMDKLEKI-SYD-----------------VKFEPTADGGSKNTMTSTYYTKGNIVLTEEE 133 (179)
Q Consensus 80 --------~~~~Y~iieG~~~~~~~~~y-~~t-----------------i~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~ 133 (179)
-.+..++.-...++ -++| ++. +.++| ++++|.+++.+..+|.+..| .-.
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~--~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP--~wv 204 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPL--NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAP--ASV 204 (235)
T ss_pred cccCCCeEEEEEecccCccCCC--CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCcc--HHH
Confidence 22333332222111 1111 122 23445 35679999888888776543 333
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCc
Q 044703 134 -IKEGKEKSLAMYKVVENYLMQNP 156 (179)
Q Consensus 134 -~~~~~e~~~~~~k~ie~yll~n~ 156 (179)
...++..+-++++.+.+|+.++-
T Consensus 205 vn~~~k~~~P~~l~~~~~~~~~~~ 228 (235)
T cd08872 205 LRAVYKREYPKFLKRFTSYVQEKT 228 (235)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhc
Confidence 35566678999999999998753
No 66
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=88.12 E-value=12 Score=30.15 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=67.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-----cCceeeeeeEEEeeeecC
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-----EGNQVKCSKNRVDALDLE 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-----~g~~~~~~kErl~~~D~~ 78 (179)
..+..+++++++++++...+- |- .++|.+. +.+.++++.-+. ....+.+. +...-..+.-|.-..|..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~--~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~ 124 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDS--QTEIYQYVQNSMAPHPARDYVVLRTWRTNLP 124 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCC--CceEEEEEccCCCCCCCcEEEEEEEEEEeCC
Confidence 346788899999999999996 65 3689985 555666553210 11111111 111111233323323333
Q ss_pred cceEEEEEE--ecCccc---cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC
Q 044703 79 NFSYKYSLI--EGDVLM---DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV 128 (179)
Q Consensus 79 ~~~~~Y~ii--eG~~~~---~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~ 128 (179)
+..+..... +-+-.+ .....+.+.+.++|.++|+|.++..+..+|.+..|
T Consensus 125 ~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP 179 (204)
T cd08908 125 KGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMP 179 (204)
T ss_pred CCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCc
Confidence 333322222 111111 11455677889999988999999999999887653
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=87.44 E-value=3.3 Score=33.80 Aligned_cols=103 Identities=11% Similarity=0.144 Sum_probs=66.3
Q ss_pred EEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEe--ecCceeeeeeEEEeeeecCcceEEEEEE
Q 044703 11 TSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINV--VEGNQVKCSKNRVDALDLENFSYKYSLI 87 (179)
Q Consensus 11 ~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~--~~g~~~~~~kErl~~~D~~~~~~~Y~ii 87 (179)
.+..+++.+|++++ |... ..+..| ..++.++...+ ++ +.+-.+.. ++= .+...-+++ .++..++.+- .-
T Consensus 75 ligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~-~~kA~LeVGFk~l--~E~y~S~Vt-~~~p~l~kt~-~~ 146 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSG-PLKADLEVGFKPL--DERYTSNVT-CVKPHLTKTV-CA 146 (227)
T ss_pred hhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCC-CceeeEEecCccc--chhheeeeE-EecccceEEe-ec
Confidence 47899999999997 7777 777777 46666665543 22 23333433 221 122333433 5556555433 33
Q ss_pred ecCccccceeeEEEEEEeeecC--CCCceEEEEEEEEEcC
Q 044703 88 EGDVLMDKLEKISYDVKFEPTA--DGGSKNTMTSTYYTKG 125 (179)
Q Consensus 88 eG~~~~~~~~~y~~ti~v~p~~--~g~s~v~W~~~ye~~~ 125 (179)
+|.+ +......|++.|+. .+.|.+...+.|+-+.
T Consensus 147 d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 5543 66677899999998 5789999999999764
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=78.32 E-value=29 Score=26.86 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=86.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--ee---eeee-EEEeeeec
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QV---KCSK-NRVDALDL 77 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--~~---~~~k-Erl~~~D~ 77 (179)
..+..+..++++++++...+. +-.. .|-+. +.++++++--..-..|..+.+..-. +. ..+- .+.....+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 456677889999998888876 4332 88884 7788887652111456665554322 21 1111 11122233
Q ss_pred CcceEEEEEEecCccc----c--ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHH-HHHHHHHHHHHHHH
Q 044703 78 ENFSYKYSLIEGDVLM----D--KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKE-GKEKSLAMYKVVEN 150 (179)
Q Consensus 78 ~~~~~~Y~iieG~~~~----~--~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-~~e~~~~~~k~ie~ 150 (179)
....+..+=++.+..+ . ....+.+.+.++|.+++.|.|++...-++.+..| .-.++. +......+++.+-+
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP--~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIP--SWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCCh--HHHHHHHHHHhHHHHHHHHHH
Confidence 3344444333332211 1 1346677888999988889999998888776533 334433 34556788888888
Q ss_pred HHhcCc
Q 044703 151 YLMQNP 156 (179)
Q Consensus 151 yll~n~ 156 (179)
+|..+.
T Consensus 199 ~~~~~~ 204 (206)
T PF01852_consen 199 ALKKQK 204 (206)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 887765
No 69
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=72.31 E-value=51 Score=26.75 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=73.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcC--CCCCceE-EEEEeecCceeeeeeEEEeeee------
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEG--DGGAGSI-RQINVVEGNQVKCSKNRVDALD------ 76 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eG--dg~~Gsv-R~~~~~~g~~~~~~kErl~~~D------ 76 (179)
...|..|+..++.+|+.+. +... ..+|-| .++++++++- +++ +| |.++....++ .+.=| |.+|
T Consensus 49 ~R~Egvv~~~~~ev~d~v~-~~~~-r~~Wd~-~v~~~~Iie~Id~dt--~I~~yvt~~~~~~--iISpR-DFVdv~~~~~ 120 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR-PGPY-RLDWDS-LMTSMDIIEEFEENC--CVMRYTTAGQLLN--IISPR-EFVDFSYTTQ 120 (202)
T ss_pred EEEEEEecCCHHHHHHHHh-cccc-hhcccc-hhhheeHhhhhcCCc--EEEEEEcccCCcC--ccCcc-ceEEEEEEEE
Confidence 3456678899999999996 7554 579998 5999999874 222 33 3444443322 12212 2222
Q ss_pred --cCcceEEEEEEecCcccccee--eEEEEEEeeecCCC--CceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703 77 --LENFSYKYSLIEGDVLMDKLE--KISYDVKFEPTADG--GSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE 149 (179)
Q Consensus 77 --~~~~~~~Y~iieG~~~~~~~~--~y~~ti~v~p~~~g--~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie 149 (179)
+.-.++.-++.-....+..+. ++-+=+-+.|.+++ .|.++|-+..++++. .|...+ +.+-..+..++..+.
T Consensus 121 ~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiIdq~~~~~~~~F~~~Lr 198 (202)
T cd08902 121 YEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVDTAMASTLVNFYSDLK 198 (202)
T ss_pred eCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHHHHhhHHHHHHHHHHH
Confidence 222222233222111111111 12223456676655 788999999888755 344444 323334455555555
Q ss_pred HHH
Q 044703 150 NYL 152 (179)
Q Consensus 150 ~yl 152 (179)
.+|
T Consensus 199 k~~ 201 (202)
T cd08902 199 KAL 201 (202)
T ss_pred Hhc
Confidence 444
No 70
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=65.41 E-value=35 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=30.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD 48 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd 48 (179)
++.++..+-+.+.+-.+++ |..=++|+++|. +++++ .+++
T Consensus 3 ~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STT
T ss_pred EEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCC
Confidence 5677888999999999998 999889999994 88888 4443
No 71
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=62.06 E-value=82 Score=25.33 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=74.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcC-C-CCCceEEEEEeec-Cce----eeeeeEEE-eeeec
Q 044703 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEG-D-GGAGSIRQINVVE-GNQ----VKCSKNRV-DALDL 77 (179)
Q Consensus 6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eG-d-g~~GsvR~~~~~~-g~~----~~~~kErl-~~~D~ 77 (179)
...+..++++++++|+.+. |... -.+|-+ .+..++++|- | .+ .|-+..... +++ -..+--|- ..+++
T Consensus 48 ~k~egvi~~~~e~v~~~l~-~~e~-r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~ 122 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMY-QPEH-RIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRYEG 122 (204)
T ss_pred EEEEEEecCCHHHHHHHHh-ccch-hhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEeCC
Confidence 4567789999999999997 7666 679999 5888888764 2 22 222222221 111 11111111 11234
Q ss_pred CcceEEEEEEecCccccceeeE------EEEEEeeecCCC--CceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703 78 ENFSYKYSLIEGDVLMDKLEKI------SYDVKFEPTADG--GSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV 148 (179)
Q Consensus 78 ~~~~~~Y~iieG~~~~~~~~~y------~~ti~v~p~~~g--~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i 148 (179)
....+.+.-++-+-.+ +-+.| .+=+-+.|.+++ +|.++|-+..++++.. |.-.+ +.+...+.+++.++
T Consensus 123 ~~~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~l--P~~vv~~~~~~~~~~f~~~~ 199 (204)
T cd08904 123 NMNIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNL--SRSVIEKTMPTNLVNLILDA 199 (204)
T ss_pred CEEEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCC--CHHHHHHHhHHHHHHHHHHH
Confidence 3333333334433221 12222 344556777654 7999999998888653 33333 33334455555555
Q ss_pred HH
Q 044703 149 EN 150 (179)
Q Consensus 149 e~ 150 (179)
..
T Consensus 200 ~~ 201 (204)
T cd08904 200 KD 201 (204)
T ss_pred HH
Confidence 43
No 72
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=50.65 E-value=28 Score=29.17 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+.+++..+....++..+...+....+.+.+|+.+.++||.|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 35666665432221111222345678899999999999999866
No 73
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=47.53 E-value=95 Score=21.63 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=34.8
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~ 156 (179)
.|++++-+ +..-.+.|.+.... +++.+=..+.+.......+|.+.+. ......+.++...||..||
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 36666654 55566788888775 4566655555554433323333332 2356778889999999999
No 74
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=44.10 E-value=37 Score=28.75 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+++++..+.+..++.-+...+....+.+.+|+.+.++|+.|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 47777766432211111111345678899999999999999865
No 75
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=43.71 E-value=42 Score=28.32 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 117 MTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 117 W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
|.+++++..+.++.. ...+....+.+.+|+++.++||.|
T Consensus 249 ~~i~~~~~~~~~~~~----~~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATELSV----DPEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCchHH
Confidence 667776543322222 234578889999999999999865
No 76
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=40.64 E-value=50 Score=27.62 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=26.9
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.++++|++.....+.+ ...+....+.+.+|+++.++|+.|
T Consensus 238 ~y~i~~~~~~~~~~~~----~~~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMYST----DVEVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCCCC----CHHHHHHHHHHHHHHHHHcCcHHh
Confidence 5677776543222222 223578899999999999999865
No 77
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=36.36 E-value=63 Score=27.28 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+++++.....+.+ ...+....+.+.+|+++.++|+.|
T Consensus 251 ~~~i~~~~~~~~~~~~----d~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPLD----DAEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCchHH
Confidence 4667776643322222 223467788899999999999865
No 78
>PRK14681 hypothetical protein; Provisional
Probab=36.02 E-value=1.5e+02 Score=23.00 Aligned_cols=69 Identities=6% Similarity=0.015 Sum_probs=45.1
Q ss_pred EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (179)
Q Consensus 82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d 157 (179)
-.|++++-+ +..-.++|.++...+++++|=..+.+........|.+.+. ......+.++.+.||..|+.
T Consensus 60 ~Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 357777665 4444578888887544678777777766544333444332 23566788899999988774
No 79
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.15 E-value=71 Score=26.95 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=27.2
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.|.+.+++.....+.. ...+....+.+.+|+++.++|+.|
T Consensus 248 ~y~i~i~~~~~~~~~~----~i~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFPSD----DVIADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCCCC----CHHHHHHHHHHHHHHHHHcCcHhh
Confidence 4667776543222222 234578899999999999999865
No 80
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=34.11 E-value=81 Score=26.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q 044703 137 GKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 137 ~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
..+....+.+.+|+++.++|+.|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 45678899999999999999865
No 81
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.80 E-value=76 Score=26.79 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccc
Q 044703 138 KEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 138 ~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+..+.+.+|+++.++||.|
T Consensus 257 ~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 257 LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHHcCcHHh
Confidence 3477899999999999999865
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.40 E-value=74 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+++++.....+.+ ...+....+.+.+|+++.++|+.|
T Consensus 232 ~~~i~i~~~~~~~~~~----~~~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFPSE----DAQADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3666666532222222 234578999999999999999865
No 83
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=32.29 E-value=80 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.|.+.+++..+..+..+ ..+....+.+.+|+++.++|+.|
T Consensus 257 ~~~i~~~~~~~~~~~~d----~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLSAD----DETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCCCC----HHHHHHHHHHHHHHHHHcCcHHH
Confidence 47777766433222222 23577889999999999999865
No 84
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=30.66 E-value=60 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccceec
Q 044703 135 KEGKEKSLAMYKVVENYLMQNPEEYASLEFS 165 (179)
Q Consensus 135 ~~~~e~~~~~~k~ie~yll~n~d~~~~~~~~ 165 (179)
+.+++-...++|.+.+|..+|.|+ .++++
T Consensus 57 ~~lk~EI~~L~k~vq~yCeanrDE--LTe~G 85 (170)
T COG4396 57 APLKAEIMSLTKRVQAYCEANRDE--LTENG 85 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHH--HhcCC
Confidence 455667889999999999999997 45544
No 85
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=30.57 E-value=89 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+.+++..+..+.. ...+....+.+.+|+++.++|+.|
T Consensus 245 ~~~i~~~~~~~~~~~~----~~~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFPGD----DEIAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCCCC----CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3666676543221222 224578889999999999999865
No 86
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.75 E-value=2.3e+02 Score=20.55 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=55.5
Q ss_pred EEEEEcCCHHHHHHHhhhccCcccccccC---cceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703 8 DEYTSPISPARLFKALIVDSHNLIPKLMP---QAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (179)
Q Consensus 8 ~ei~i~apa~kvW~~~~~d~~~llp~~~P---~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y 84 (179)
.+..+++||+.+|+.+. +.. +.++-- ..+..-++ .|.--.=.+..+. .++=+++++. .++.|.+
T Consensus 3 I~~~l~v~a~~ff~~l~-~s~--~~DI~~~tgk~~~~~~L------~G~~Y~K~~~~~~---~~~v~It~~~-~~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI-DSL--LYDIKQATGKKLPVKQL------KGFSYQKKFKNKR---EAKVKITEYE-PNKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHH-HHH--HHHHHHHcCCCCChhhc------CCcEEEEEcCCCC---EEEEEEEEEc-CCCEEEE
Confidence 45679999999999986 322 222221 10100011 1222222223332 2333466664 4556666
Q ss_pred EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (179)
Q Consensus 85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~ 125 (179)
+..-- ...+..+-++.|.++|.|.|+.+=++++.+
T Consensus 70 ~~~s~------~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 70 TFSSS------RGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEec------CCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 66322 455788889999988888888887777543
No 87
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.51 E-value=99 Score=26.10 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=25.6
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 116 ~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
.+.+++++.....+.++ ..+....+.+.+|+++.++|+.|
T Consensus 249 ~~~i~~~~~~~~~~~~~----~~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFPGES----EEADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCCCCC----HHHHHHHHHHHHHHHHHcCcHHH
Confidence 46677765322222222 12346789999999999999854
No 88
>PRK14680 hypothetical protein; Provisional
Probab=27.57 E-value=2e+02 Score=21.56 Aligned_cols=67 Identities=4% Similarity=0.093 Sum_probs=43.2
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d 157 (179)
.|+|++-+ +..-.++|.++... |+++|=..+.+........|.+.+. ......+.++.+.||..|+.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 24 GHRILARN-----WRHGGLELDIVCED-GDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCEEEEee-----cCCCCCeEEEEEEe-CCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 57777765 44445788888764 4677777777765443333444332 23567788999999988873
No 89
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=27.56 E-value=82 Score=25.15 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=39.5
Q ss_pred EcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCc
Q 044703 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91 (179)
Q Consensus 12 i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~ 91 (179)
++.+..|+|. |.++ -+..-|..| .+.+.. +|.. ....+++..+..=...=+-|-.+|+....+.|++-|-++
T Consensus 3 ~~i~v~K~W~----d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD----DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC----CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 4455566675 2222 234455434 356653 3222 345555554432112223456667788899999999876
Q ss_pred c
Q 044703 92 L 92 (179)
Q Consensus 92 ~ 92 (179)
.
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 5
No 90
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.39 E-value=1.1e+02 Score=25.58 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=26.6
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 117 MTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 117 W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
+.+++.+.-.. ++++ ...+....+.+.+|+++.++|+.|
T Consensus 236 y~v~~~~~~~~-~~~~---~~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PSAE---DVAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-Cchh---HHHHHHHHHHHHHHHHHHhChHHH
Confidence 66666653222 1222 345688899999999999999865
No 91
>PRK14688 hypothetical protein; Provisional
Probab=26.25 E-value=2e+02 Score=21.14 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=41.6
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~ 156 (179)
.|++++-+ +..-.+.|.++... |+++|=..+.+........|.+.+. ......+.++-+.||..|+
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVK~R~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQD-GEYLVFIEVRTKRRLGYGLPAESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEee-CCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 46777655 44446788888764 4577766666655433333333331 2356778889999998887
No 92
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=25.00 E-value=2.5e+02 Score=23.16 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=28.6
Q ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703 115 NTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 115 v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
..|.+.+++.-..+..+ ...+....+.+.+|+.+.++|+.|
T Consensus 246 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE----DIEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc----hHHHHHHHHHHHHHHHHHcChHhh
Confidence 56777777643322222 234578899999999999999754
No 93
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=23.68 E-value=1.4e+02 Score=22.51 Aligned_cols=23 Identities=17% Similarity=0.396 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q 044703 137 GKEKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 137 ~~e~~~~~~k~ie~yll~n~d~~ 159 (179)
..+.+..+.+.+|+.+.++|+.|
T Consensus 162 ~~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 162 VEEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 34688899999999999999865
No 94
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=23.39 E-value=4e+02 Score=21.47 Aligned_cols=119 Identities=13% Similarity=-0.011 Sum_probs=62.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec---CceeeeeeEEEeeeecC--
Q 044703 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE---GNQVKCSKNRVDALDLE-- 78 (179)
Q Consensus 4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~---g~~~~~~kErl~~~D~~-- 78 (179)
..+..+++|+++++.|-..+- + . -+.|-..+.++-.+..-|+.- -|-.-.+.. -..-..+.-|--..|.+
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl-~--~-R~~WD~~~~~~~~ie~ld~~t-di~~y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVL-R--E-RHLWDEDFLQWKVVETLDKQT-EVYQYVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-h--h-HhhHHhhcceeEEEEEeCCCc-EEEEEEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 345678899999999988775 5 3 468988644443333334210 011111111 00011233332222332
Q ss_pred cceEEEEEEecC-ccccc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCC
Q 044703 79 NFSYKYSLIEGD-VLMDK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNI 127 (179)
Q Consensus 79 ~~~~~Y~iieG~-~~~~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~ 127 (179)
...+.+.=++.. .++.+ ...+.+-+-++|.++|+|.+++.+..++++-.
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGHS 179 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCCC
Confidence 222222222322 11111 33445667889998889999999999998754
No 95
>PRK12497 hypothetical protein; Reviewed
Probab=23.26 E-value=2.5e+02 Score=20.40 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=41.2
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d 157 (179)
.|++++-+ +..-.+.|.++... ++++|=..+.+-.......|.+.+. ......|.++.+.||..+|+
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eav~--~~K~~ri~~aA~~yL~~~~~ 90 (119)
T PRK12497 24 GLRILARN-----FRCRFGEIDLIARD-GDTLVFVEVKTRRSDRFGGAAEAVT--PRKQRRLRRAAQLWLARHPS 90 (119)
T ss_pred CCEEEcce-----ecCCCCcEeeeEEe-CCEEEEEEEEeccCCCCCCHHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46777655 33335677777764 4677666666655433223333332 23556788999999999974
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=23.22 E-value=2.9e+02 Score=26.72 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=40.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccc--cccCcceeEEEEEcCC-----CCCceEEEEEeecCceeeeeeEEEeeeec
Q 044703 5 TVTDEYTSPISPARLFKALIVDSHNLIP--KLMPQAVKSIEIFEGD-----GGAGSIRQINVVEGNQVKCSKNRVDALDL 77 (179)
Q Consensus 5 ~v~~ei~i~apa~kvW~~~~~d~~~llp--~~~P~~v~sve~~eGd-----g~~GsvR~~~~~~g~~~~~~kErl~~~D~ 77 (179)
++-...-+.++|||.-+++. + +.++. +-|-+.|.++.++.+. +.-|.||.|.+.++ .+.|. .-.
T Consensus 148 ~l~e~~~vTgsaDKtIklWk-~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~gh 218 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWK-G-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HGH 218 (745)
T ss_pred ecCCCcEEeccCcceeeecc-C-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ecc
Confidence 33344456777777655554 2 22222 2233456666555442 24589999999433 33333 446
Q ss_pred CcceEEEEE
Q 044703 78 ENFSYKYSL 86 (179)
Q Consensus 78 ~~~~~~Y~i 86 (179)
.++.|++++
T Consensus 219 tn~vYsis~ 227 (745)
T KOG0301|consen 219 TNFVYSISM 227 (745)
T ss_pred ceEEEEEEe
Confidence 777777773
No 97
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.03 E-value=1.5e+02 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCcccc
Q 044703 139 EKSLAMYKVVENYLMQNPEEY 159 (179)
Q Consensus 139 e~~~~~~k~ie~yll~n~d~~ 159 (179)
+....+.+.+|+++.++||.|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 468899999999999999865
No 98
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=1.4e+02 Score=24.84 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccce
Q 044703 131 EEEIKEGKEKSLAMYKVVENYLMQNPEEYASLE 163 (179)
Q Consensus 131 ~~~~~~~~e~~~~~~k~ie~yll~n~d~~~~~~ 163 (179)
++..+++.++...---.+|.|+++||+-..+++
T Consensus 31 ~~~~~aa~~aV~~~R~~Le~yI~~nP~f~ts~~ 63 (256)
T COG2122 31 EAHEKAAEEAVLRHRSELEDYILKNPEFLTSLE 63 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhcccc
Confidence 344555666777777789999999997554443
No 99
>PRK14684 hypothetical protein; Provisional
Probab=22.10 E-value=3e+02 Score=20.18 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=42.2
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d 157 (179)
.|++++-+ +..-.++|.++... |++.|=..+.+.+......|.+.+. ......+.++-+.||..|+.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eaV~--~~K~~rl~r~A~~yL~~~~~ 90 (120)
T PRK14684 24 GLSFITKN-----FRYKQGEIDLIMSD-QSMLVFIEVRYRRFSDFIHPVATVT--PLKQRRLIKTALHYLQKHRL 90 (120)
T ss_pred CCEEEEEE-----ecCCCCeEEEEEEe-CCEEEEEEEeEcCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46676654 44445788888764 5677777777765433233333332 23556788889999988874
No 100
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=21.47 E-value=36 Score=22.01 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCccccccce
Q 044703 145 YKVVENYLMQNPEEYASLE 163 (179)
Q Consensus 145 ~k~ie~yll~n~d~~~~~~ 163 (179)
.+.|=.||++||+.-..+.
T Consensus 2 ~Q~iV~YLv~nPevl~kl~ 20 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKLK 20 (57)
T ss_pred hHHHHHHHHHChHHHHHHH
Confidence 4677789999998765543
No 101
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=20.85 E-value=3.5e+02 Score=19.82 Aligned_cols=111 Identities=10% Similarity=0.004 Sum_probs=53.9
Q ss_pred EEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEE-e---ecCceeeeeeEEEee----eecCcc
Q 044703 9 EYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQIN-V---VEGNQVKCSKNRVDA----LDLENF 80 (179)
Q Consensus 9 ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~-~---~~g~~~~~~kErl~~----~D~~~~ 80 (179)
+.++++.---+++.+. |..+ +|-.||+.+.......+..+ +..+... . ..+....+....-.. -+....
T Consensus 4 ~~~~~~NWK~~~En~~-E~YH-~~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T cd00680 4 EYEVDCNWKLAVENFL-ECYH-VPTVHPDTLATGLPLPLLFG-DHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGG 80 (188)
T ss_pred EEEeccCceEehhhcc-cccc-ccccChhhhccccccCcccC-CceEEEeccCCCCChhhcccchhhhcccccccccccC
Confidence 4566777667777775 8888 78888875543210000001 1111111 0 001000000000000 012233
Q ss_pred eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703 81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (179)
Q Consensus 81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~ 123 (179)
...|.+. .+.....+.++.....+.|.+.+.|.+.|..-+.+
T Consensus 81 ~~~~~~f-Pn~~~~~~~~~~~~~~~~P~~~~~t~~~~~~~~~~ 122 (188)
T cd00680 81 YLYLYLF-PNLMIGLYPDSLQVQQFVPIGPNKTRLEVRLYRPK 122 (188)
T ss_pred eEEEEEC-CcEeeeecCCEEEEEEEEecCCCcEEEEEEEEEec
Confidence 3344443 33322235567788999999988898888865554
No 102
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.71 E-value=3.1e+02 Score=19.18 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred cccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeee
Q 044703 31 IPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALD 76 (179)
Q Consensus 31 lp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D 76 (179)
.|+|-+...+.+.+.||++ .+-.+.-..|-| ..|+++....++
T Consensus 2 ~~~~~~~~~~~v~V~eG~~---~~L~C~pP~g~P~P~i~W~~~~~~~i~ 47 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDS---VVLPCNPPKSAVPLRIYWMNSDLLHIT 47 (95)
T ss_pred CCcCCccccceeEEecCCC---EEEEecCCCCCCCCEEEEECCCCcccc
Confidence 3555555567777778863 344444444433 456666544444
No 103
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.48 E-value=2.6e+02 Score=18.52 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=34.0
Q ss_pred cccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCccccceeeE
Q 044703 31 IPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKI 99 (179)
Q Consensus 31 lp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~~~~~~~~y 99 (179)
+.-|.|. -++|+++-.+ +....+.-..+| .+.=.+.. + +...|.|++.++....+|+..+
T Consensus 12 F~vwAP~-A~~V~l~l~~---~~~~~m~~~~~G---~W~~~v~~-~-~g~~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 12 FRLWAPD-AKRVTLRLDD---GEEIPMQRDGDG---WFEAEVPG-A-AGTRYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEeCCC-CCEEEEEecC---CCcccCccCCCc---EEEEEeCC-C-CCCeEEEEECCCcCCCCCcccc
Confidence 5578886 6788876332 122223322333 33333343 3 7778999998765555666543
No 104
>PRK14686 hypothetical protein; Provisional
Probab=20.03 E-value=3.4e+02 Score=19.76 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=41.1
Q ss_pred EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (179)
Q Consensus 83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~ 156 (179)
.|++++-+ +..-.++|.++... |+++|=..+.+........|.+.+. ......+.++-+.||..++
T Consensus 23 Gy~il~rN-----~r~~~GEIDlIa~~-~~~lvFVEVKtR~~~~~g~~~eaV~--~~K~~rl~~aA~~yl~~~~ 88 (119)
T PRK14686 23 GYTILERN-----YRFQKAEIDIIAQK-GNILVIVEVKTRSSSDFGNPQDFVK--PKKIQLLVKAVNHYIEDKD 88 (119)
T ss_pred CCEEEEEE-----ecCCCCcEEEEECc-CCEEEEEEEEecCCCCCCChhHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 47777665 44456788888764 4677666666655433223333332 2356678888889998775
Done!