BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044705
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DVG|B Chain B, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 353
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 64 PEELAQLALSISLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIK 123
PEE+ Q +I + ++ L+ + Q K + E + +D + Q+++
Sbjct: 6 PEEVVQQKFAIVAKEXKIDNPELITIPNQWKLVQEYEKKQKKDIRIQLNA---------- 55
Query: 124 EIRRLGNARNAVTDDSF 140
++ GN RNA+TD +
Sbjct: 56 --QKTGNWRNAITDPKY 70
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 35 IEESCRSTRYPTLCVHCLSGFARKTSLHSPEELAQLALSISLYKARVTKAYLVKVAKQLK 94
I E C TR P+LC+ L R S + L Q ++ I+ A+ T + + Q
Sbjct: 6 ISEICPKTRNPSLCLQALESDPRSAS-KDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-- 62
Query: 95 AINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLG--NARN----------AVTDDSFTR 142
A + E C + I LGQ+ K+ G N+ N +DSF
Sbjct: 63 ATDPKLKGRYETCSENYADAIDSLGQA-KQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
Query: 143 IDNVETWVSSA---LTDASDCV 161
N+ T + A L D D V
Sbjct: 122 PPNIPTQLHQADLKLEDLCDIV 143
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 23 PSFARHSRARAYIEESCRSTRYPTL 47
PSF + A IE++C ST +PTL
Sbjct: 300 PSFFPAGKTHADIEQACASTPFPTL 324
>pdb|1ZC8|K Chain K, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
Length = 130
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 106 DCKQQIDSGIGQLGQSIKEIRRLGNARNAVTDDSFTRIDNVETWV 150
D + ++GI G +K +R G DSF RI+N E W+
Sbjct: 20 DILETYEAGIVLKGSEVKSLREKGTVS---FKDSFVRIENGEAWL 61
>pdb|3CJP|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
pdb|3CJP|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
Length = 272
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 35 IEESCRS-TRYPTLCVHCLSGFARKTSLHSPEELAQLALSISLYKARVTKAYLVKVAKQL 93
I E C++ + P + H + G T++ +E+ L L S Y + +++K+
Sbjct: 163 IAELCKAFPKVPVILGH-MGGSNWMTAVELAKEIQNLYLDTSAYFS----TFVLKIV--- 214
Query: 94 KAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGN---ARNAVTDDSFTRIDNVE 147
IN + C D G L SI+ I+++ N NAV D+ +R+ N+E
Sbjct: 215 --INELPLK----CIFGTDMPFGDLQLSIEAIKKMSNDSYVANAVLGDNISRLLNIE 265
>pdb|1K8H|A Chain A, Nmr Structure Of Small Protein B (Smpb) From Aquifex
Aeolicus
Length = 133
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 106 DCKQQIDSGIGQLGQSIKEIRRLGNARNAVTDDSFTRIDNVETWV 150
D + ++GI G +K +R G DSF RI+N E W+
Sbjct: 20 DILETYEAGIVLKGSEVKSLREKGTVS---FKDSFVRIENGEAWL 61
>pdb|2C6J|A Chain A, Structure Of P. Knowlesi Dbl Domain Capable Of Binding
Human Duffy Antigen
Length = 338
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 39 CRSTRYPTLCVHCLSGFARKTSLHSPEELAQLALSIS---LYKARVTKAYLVKVAKQLKA 95
C S R LC+ L+ T HS ++ L L++ +Y A V L+K
Sbjct: 36 CISDRRYQLCMKELTNLVNNTRTHSHNDITFLKLNLKRKLMYDAAVEGDLLLK------- 88
Query: 96 INATEYQTVEDCKQQIDSGIGQLGQSI 122
YQ ++ + I G+G G I
Sbjct: 89 --KNNYQYNKEFCKDIRWGLGDFGDII 113
>pdb|1P6V|A Chain A, Crystal Structure Of The Trna Domain Of Transfer-Messenger
Rna In Complex With Smpb
pdb|1P6V|C Chain C, Crystal Structure Of The Trna Domain Of Transfer-Messenger
Rna In Complex With Smpb
pdb|2OB7|B Chain B, Structure Of Tmrna-(smpb)2 Complex As Inferred From
Cryo-em
pdb|2OB7|C Chain C, Structure Of Tmrna-(smpb)2 Complex As Inferred From
Cryo-em
Length = 156
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 106 DCKQQIDSGIGQLGQSIKEIRRLGNARNAVTDDSFTRIDNVETWV 150
D + ++GI G +K +R G DSF RI+N E W+
Sbjct: 20 DILETYEAGIVLKGSEVKSLREKGTV---SFKDSFVRIENGEAWL 61
>pdb|1RL9|A Chain A, Crystal Structure Of Creatine-adp Arginine Kinase Ternary
Complex
Length = 357
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 25 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 84
Query: 135 VTDD 138
+ DD
Sbjct: 85 IIDD 88
>pdb|1P52|A Chain A, Structure Of Arginine Kinase E314d Mutant
Length = 357
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 25 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 84
Query: 135 VTDD 138
+ DD
Sbjct: 85 IIDD 88
>pdb|1SD0|A Chain A, Structure Of Arginine Kinase C271a Mutant
Length = 357
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 25 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 84
Query: 135 VTDD 138
+ DD
Sbjct: 85 IIDD 88
>pdb|1M15|A Chain A, Transition State Structure Of Arginine Kinase
pdb|3M10|A Chain A, Substrate-Free Form Of Arginine Kinase
pdb|3M10|B Chain B, Substrate-Free Form Of Arginine Kinase
pdb|4GVY|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Citrulline And Mgadp
pdb|4GVZ|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
D-Arginine, Mgadp, And Nitrate.
pdb|4GW0|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
Imino-L- Ornithine, Mgadp, And Nitrate.
pdb|4GW2|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Ornithine, Mgadp, And Nitrate
Length = 357
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 25 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 84
Query: 135 VTDD 138
+ DD
Sbjct: 85 IIDD 88
>pdb|1BG0|A Chain A, Transition State Structure Of Arginine Kinase
Length = 356
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 24 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 83
Query: 135 VTDD 138
+ DD
Sbjct: 84 IIDD 87
>pdb|1P50|A Chain A, Transition State Structure Of An Arginine Kinase Mutant
Length = 356
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 75 SLYKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNA 134
SL K +TK + + + AT ++ + +DSG+G + R G +
Sbjct: 24 SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDP 83
Query: 135 VTDD 138
+ DD
Sbjct: 84 IIDD 87
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 150 VSSALTDASDCVAQFPVRNMSKLKATIKGKVLNVAQVTSNAL 191
+S A+ DA C+AQ P +++ AT G +L + ++T+NA+
Sbjct: 42 ISDAILDA--CLAQDPKSHVACETATKTGLILVLGEITTNAV 81
>pdb|1Z23|A Chain A, The Serine-Rich Domain From Crk-Associated Substrate
(P130cas)
Length = 163
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 88 KVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNAVTDDS 139
K+++QL+ + YQT+ Q +DSG G G ++ ++ RL AV +D+
Sbjct: 93 KLSRQLQKMEDV-YQTLVVHGQVLDSGRGGPGFTLDDLDRLVACSRAVPEDA 143
>pdb|3GK3|A Chain A, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|B Chain B, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|C Chain C, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|D Chain D, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
Length = 269
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 111 IDSGIGQLGQSIKEIRRLGNARNAVTDDSFTRIDNVETWV 150
+ G+G LG +I RRL +A AV R D+V TW+
Sbjct: 30 VTGGMGGLGAAIS--RRLHDAGMAVAVSHSERNDHVSTWL 67
>pdb|2YAY|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex With Substrate Analogue Dupnpp
pdb|2YAZ|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YB0|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
Length = 271
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 119 GQSIKEIRRLGNARNAVTDDSFTRIDNVETWVSSALTDASDCVAQFPVRNMSKLKATIKG 178
G + + L + NA+ D S+ + +++ W + ++++ + +P + L AT
Sbjct: 14 GAILHSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATP-- 71
Query: 179 KVLNVAQVTSNALALFH 195
++A V + +FH
Sbjct: 72 ---DLANVRIELVDIFH 85
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 32 RAYIEESCRSTRYPTLCVHCLSGFARKTSLHSPEELAQLALSISLYKARVTKAYLVKVAK 91
R Y E S + +Y T+ + ++GF + +L P ++ L +L K + + +
Sbjct: 346 RGYTE-SGSNNQYWTIEKN-VNGFYKFRNLSDPSKILDLKDGNTLNKTPLVVSSENSSSS 403
Query: 92 QLKAINATEYQTVEDCKQQIDSGIGQ 117
Q I T YQTV+D Q+ S + +
Sbjct: 404 QEWLIEKTNYQTVKDGTYQVSSKLNE 429
>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
Length = 320
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 77 YKARVTKAYLVKVAKQLKAINATEYQTVEDCKQQIDSGIGQLGQSIKEIRRLGNARNAVT 136
YK T Y V K++ ++D +I GQ+ I R+G+A N T
Sbjct: 89 YKTSTTAPYSVAFKVNTKSL-------IKDHDYKITFEQGQIASGITVDYRIGSAFNKTT 141
Query: 137 DDSF 140
DDSF
Sbjct: 142 DDSF 145
>pdb|2CJE|A Chain A, The Crystal Structure Of A Complex Of Leishmania Major
Dutpase With Substrate Analogue Dupnhp
Length = 268
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 119 GQSIKEIRRLGNARNAVTDDSFTRIDNVETWVSSALTDASDCVAQFPVRNMSKLKATIKG 178
G + + L + NA+ D S+ + +++ W + ++++ + +P + L AT
Sbjct: 11 GAILHSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATP-- 68
Query: 179 KVLNVAQVTSNALALFH 195
++A V + +FH
Sbjct: 69 ---DLANVRIELVDIFH 82
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 14 FSCLTATVEPS--FARHSRARAYIEESCRSTRYPTLCVHCLSGFARKTSL 61
+ C+ A PS RH + CR R + VHCL+G +R +L
Sbjct: 52 YLCIPAADSPSQNLTRHFKESIKFIHECR-LRGESCLVHCLAGVSRSVTL 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,529,377
Number of Sequences: 62578
Number of extensions: 145859
Number of successful extensions: 457
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 22
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)