Query 044706
Match_columns 117
No_of_seqs 76 out of 78
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 2E-32 4.3E-37 202.0 7.0 97 1-104 1-117 (118)
2 PF05617 Prolamin_like: Prolam 99.2 3.4E-12 7.5E-17 82.9 2.4 54 40-94 9-70 (70)
3 PF07172 GRP: Glycine rich pro 90.6 0.16 3.4E-06 36.1 1.6 25 1-28 1-28 (95)
4 PF09585 Lin0512_fam: Conserve 48.0 11 0.00023 28.1 1.3 34 50-84 13-47 (113)
5 PF07064 RIC1: RIC1; InterPro 23.5 35 0.00076 27.8 0.7 33 56-95 159-191 (258)
6 PF15240 Pro-rich: Proline-ric 22.7 66 0.0014 25.7 2.1 17 6-25 2-18 (179)
7 PF03954 Lectin_N: Hepatic lec 22.2 38 0.00083 26.1 0.6 19 6-26 43-61 (138)
8 cd04660 nsLTP_like nsLTP_like: 22.2 69 0.0015 20.8 1.8 58 38-95 6-66 (73)
9 PF08138 Sex_peptide: Sex pept 19.5 49 0.0011 22.2 0.6 15 4-18 2-16 (56)
10 smart00499 AAI Plant lipid tra 16.4 87 0.0019 18.8 1.2 42 54-95 22-72 (79)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.97 E-value=2e-32 Score=202.01 Aligned_cols=97 Identities=26% Similarity=0.503 Sum_probs=85.2
Q ss_pred CchhHHHHHHHHHHHHHhcccccccCCCC--C----C-CCCCCCcchhhHHh-----------hccc-cccce-ecChhh
Q 044706 1 MALKHMFFILALTCLIMTNIANATSRNDR--L----N-NNMKPSYDLATRLE-----------ASGG-LTDQA-DIGPDC 60 (117)
Q Consensus 1 Ma~k~~f~ll~v~~ii~s~~~na~~r~~p--~----p-~~~~~~~~l~~rl~-----------~~g~-lnG~~-~iGp~C 60 (117)
|+||||++||+|+||++++ |||++|+| + | +..++++|+.|||+ |+++ ++||| +||++|
T Consensus 1 m~iknV~~ll~v~cIvvsV--na~lpqf~~~fp~~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aC 78 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSV--NAQLPQFPAQLPFLFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPAC 78 (118)
T ss_pred CchHHHHHHHHHHHHHhee--ccCCCCCCCCCCCCCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHH
Confidence 9999999999999999999 99998885 2 2 22346689999997 6666 79999 799999
Q ss_pred hHHHHHhhhCccccccccCCCCchhhhHHhhhcccCCCCCCCCc
Q 044706 61 CRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGL 104 (117)
Q Consensus 61 CkAi~~i~~~CWP~Mfps~pftp~e~~~Lkg~C~~~~~psP~~~ 104 (117)
||||++.+ ||||+| |++||||+ +||++|++++..+++++
T Consensus 79 CKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 79 CKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred HHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 99999977 999996 99999999 99999999988777654
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.24 E-value=3.4e-12 Score=82.91 Aligned_cols=54 Identities=28% Similarity=0.647 Sum_probs=42.9
Q ss_pred hhhHHh-hccc-cccce-ecChhhhHHHHHhhhCcccc---ccccCCCCch--hhhHHhhhcc
Q 044706 40 LATRLE-ASGG-LTDQA-DIGPDCCRAIDIITRNCWPA---MFISLEFIAE--EGNILRGYCD 94 (117)
Q Consensus 40 l~~rl~-~~g~-lnG~~-~iGp~CCkAi~~i~~~CWP~---Mfps~pftp~--e~~~Lkg~C~ 94 (117)
+..|.. |..+ ++|++ +||++||++|+.++++|||+ ||++.||+++ + +.|+++|+
T Consensus 9 ~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 9 SPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 445553 5555 56994 89999999999999999999 6677777766 5 69999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.64 E-value=0.16 Score=36.15 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=14.0
Q ss_pred CchhHHHHHH---HHHHHHHhcccccccCCC
Q 044706 1 MALKHMFFIL---ALTCLIMTNIANATSRND 28 (117)
Q Consensus 1 Ma~k~~f~ll---~v~~ii~s~~~na~~r~~ 28 (117)
||+|+++||. ++++||+|- +..|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSe---vaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE---VAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh---hhhHHh
Confidence 9999865543 334444443 445555
No 4
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=48.03 E-value=11 Score=28.07 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=27.8
Q ss_pred cccceecChhhhHHHH-HhhhCccccccccCCCCch
Q 044706 50 LTDQADIGPDCCRAID-IITRNCWPAMFISLEFIAE 84 (117)
Q Consensus 50 lnG~~~iGp~CCkAi~-~i~~~CWP~Mfps~pftp~ 84 (117)
+.|| +.-.++++|++ .|.|||.|.|+-..|+..+
T Consensus 13 lhGq-D~TkAA~RAv~DAI~~nslp~l~~~~~~~~~ 47 (113)
T PF09585_consen 13 LHGQ-DYTKAAVRAVRDAISHNSLPGLFEILGLDLD 47 (113)
T ss_pred ccCC-cHHHHHHHHHHHHHhhcchHHHHHHcCCChH
Confidence 6777 66788899986 5899999999999999443
No 5
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.46 E-value=35 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=24.5
Q ss_pred cChhhhHHHHHhhhCccccccccCCCCchhhhHHhhhccc
Q 044706 56 IGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDA 95 (117)
Q Consensus 56 iGp~CCkAi~~i~~~CWP~Mfps~pftp~e~~~Lkg~C~~ 95 (117)
|=-.| .|.++...||.+|...| +|. -|=+.|-+
T Consensus 159 Ivv~C---~RKtE~~~W~~LF~~lg-~P~---dLf~~cl~ 191 (258)
T PF07064_consen 159 IVVNC---ARKTEVRYWPYLFDYLG-SPR---DLFEECLE 191 (258)
T ss_pred HHHHH---HHhhHHHHHHHHHHhcC-CHH---HHHHHHHH
Confidence 44444 68999999999999999 776 44445543
No 6
>PF15240 Pro-rich: Proline-rich
Probab=22.73 E-value=66 Score=25.69 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhccccccc
Q 044706 6 MFFILALTCLIMTNIANATS 25 (117)
Q Consensus 6 ~f~ll~v~~ii~s~~~na~~ 25 (117)
+++||+|++|+.|- |+.
T Consensus 2 LlVLLSvALLALSS---AQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSS---AQS 18 (179)
T ss_pred hhHHHHHHHHHhhh---ccc
Confidence 35677777777774 564
No 7
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=22.23 E-value=38 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 044706 6 MFFILALTCLIMTNIANATSR 26 (117)
Q Consensus 6 ~f~ll~v~~ii~s~~~na~~r 26 (117)
.++||+++|+|-|- |+++|
T Consensus 43 ~~LLLV~IcVigsQ--~~qlq 61 (138)
T PF03954_consen 43 SLLLLVVICVIGSQ--NSQLQ 61 (138)
T ss_pred HHHHHHHHHhhcCc--cHHHH
Confidence 46778899999885 56654
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=22.18 E-value=69 Score=20.79 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=29.8
Q ss_pred cchhhHHhhccccccceecChhhhHHHHHhhhCccccccccC---CCCchhhhHHhhhccc
Q 044706 38 YDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISL---EFIAEEGNILRGYCDA 95 (117)
Q Consensus 38 ~~l~~rl~~~g~lnG~~~iGp~CCkAi~~i~~~CWP~Mfps~---pftp~e~~~Lkg~C~~ 95 (117)
.+|..|+..-.+-..+..-..+||.+++.++..|-=..+... ..-+.-+..|=+.|.-
T Consensus 6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv 66 (73)
T cd04660 6 DLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGL 66 (73)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCC
Confidence 456667652111011234667899999998877742221211 1233334455666643
No 9
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=19.51 E-value=49 Score=22.16 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHh
Q 044706 4 KHMFFILALTCLIMT 18 (117)
Q Consensus 4 k~~f~ll~v~~ii~s 18 (117)
|...+||.++||+-.
T Consensus 2 k~p~~llllvlllGl 16 (56)
T PF08138_consen 2 KTPIFLLLLVLLLGL 16 (56)
T ss_dssp ---------------
T ss_pred cchHHHHHHHHHHHH
Confidence 556677777774433
No 10
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=16.45 E-value=87 Score=18.83 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=26.2
Q ss_pred eecChhhhHHHHHh-hhCccccccc-----cCC---CCchhhhHHhhhccc
Q 044706 54 ADIGPDCCRAIDII-TRNCWPAMFI-----SLE---FIAEEGNILRGYCDA 95 (117)
Q Consensus 54 ~~iGp~CCkAi~~i-~~~CWP~Mfp-----s~p---ftp~e~~~Lkg~C~~ 95 (117)
..-...||..++.+ ...|+=..+- ... ....-+..|-..|.-
T Consensus 22 ~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~ 72 (79)
T smart00499 22 APPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGV 72 (79)
T ss_pred CCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCC
Confidence 34668899999999 8888643222 211 134555566667754
Done!