Query 044706
Match_columns 117
No_of_seqs 76 out of 78
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 23.1 31 0.0011 24.9 1.3 32 50-82 17-49 (122)
2 2ebo_A Ebola virus envelope gl 13.2 48 0.0016 22.1 0.3 14 51-64 42-56 (74)
3 1g0y_I Antagonist peptide AF10 10.2 88 0.003 17.1 0.7 10 79-88 2-11 (26)
4 1ebo_A Ebola virus envelope pr 10.0 70 0.0024 23.3 0.3 12 51-62 79-91 (131)
5 2rkn_A DIR1 protein, AT5G48485 9.1 62 0.0021 20.3 -0.2 58 37-95 9-71 (77)
6 2llk_A Cyclin-D-binding MYB-li 9.0 1.5E+02 0.005 19.0 1.6 16 77-92 22-37 (73)
7 1k8k_E P21, ARP2/3 complex 21 8.6 1.4E+02 0.0048 22.8 1.5 34 59-92 90-132 (178)
8 2knp_A Mcocc-1; disulfide-rich 8.4 65 0.0022 18.5 -0.3 10 70-79 18-27 (33)
9 1fex_A TRF2-interacting telome 8.0 1.5E+02 0.0053 18.0 1.3 19 78-96 2-20 (59)
10 1w0t_A Telomeric repeat bindin 7.7 1.6E+02 0.0053 16.9 1.2 16 79-94 3-18 (53)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=23.10 E-value=31 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred cccceecChhhhHHHH-HhhhCccccccccCCCC
Q 044706 50 LTDQADIGPDCCRAID-IITRNCWPAMFISLEFI 82 (117)
Q Consensus 50 lnG~~~iGp~CCkAi~-~i~~~CWP~Mfps~pft 82 (117)
+.|| +.-.++++|++ .|.|||.|.|+...|+.
T Consensus 17 lhGq-D~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 17 QHGQ-EPTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp SSSS-CHHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred ccCc-cHHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 5675 34567778876 57899999999988884
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.23 E-value=48 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=10.0
Q ss_pred cccee-cChhhhHHH
Q 044706 51 TDQAD-IGPDCCRAI 64 (117)
Q Consensus 51 nG~~~-iGp~CCkAi 64 (117)
.|... +||+||-.+
T Consensus 42 ggtc~ilgpdc~i~~ 56 (74)
T 2ebo_A 42 GGTCHILGPDCAIEP 56 (74)
T ss_dssp TCHHHHHGGGGGCCC
T ss_pred CCcceecCCccccCH
Confidence 46665 999999543
No 3
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=10.17 E-value=88 Score=17.08 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=7.6
Q ss_pred CCCCchhhhH
Q 044706 79 LEFIAEEGNI 88 (117)
Q Consensus 79 ~pftp~e~~~ 88 (117)
-||+.||.+-
T Consensus 2 tpftweesna 11 (26)
T 1g0y_I 2 TPFTWEESNA 11 (26)
T ss_dssp CCCCHHHHHH
T ss_pred Cccceecccc
Confidence 4899998764
No 4
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=10.04 E-value=70 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=9.3
Q ss_pred cccee-cChhhhH
Q 044706 51 TDQAD-IGPDCCR 62 (117)
Q Consensus 51 nG~~~-iGp~CCk 62 (117)
.|..+ +||+||-
T Consensus 79 GGTC~iLGPdCcI 91 (131)
T 1ebo_A 79 GGTCHILGPDCRI 91 (131)
T ss_dssp TCHHHHHGGGGGC
T ss_pred CCcceecCCcccc
Confidence 56665 9999994
No 5
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=9.08 E-value=62 Score=20.29 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CcchhhHHhhccccccceecChhhhHHHHHhhhCccccc-----cccCCCCchhhhHHhhhccc
Q 044706 37 SYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAM-----FISLEFIAEEGNILRGYCDA 95 (117)
Q Consensus 37 ~~~l~~rl~~~g~lnG~~~iGp~CCkAi~~i~~~CWP~M-----fps~pftp~e~~~Lkg~C~~ 95 (117)
..+|..|+..-.+ .+...-.++||.+++..+..|-=.. +.+.++-++-+.-|=+.|.-
T Consensus 9 ~~~L~pC~~yv~~-~~~~~Ps~~CC~~lk~~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv 71 (77)
T 2rkn_A 9 QDELNECKPAVSK-ENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGL 71 (77)
T ss_dssp HHHHHHHGGGGBS-SSCCCCCHHHHHHHTTCCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTC
T ss_pred HHhHhhCHHHHcC-CCCCCCCHHHHHHHHhcCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCC
Confidence 3456667652211 1223567789999998676663221 12224555555566677753
No 6
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=9.01 E-value=1.5e+02 Score=19.00 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.1
Q ss_pred ccCCCCchhhhHHhhh
Q 044706 77 ISLEFIAEEGNILRGY 92 (117)
Q Consensus 77 ps~pftp~e~~~Lkg~ 92 (117)
..-+||+||-++|...
T Consensus 22 ~k~~wT~EED~~L~~l 37 (73)
T 2llk_A 22 HVGKYTPEEIEKLKEL 37 (73)
T ss_dssp CCCSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 5679999999988764
No 7
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=8.64 E-value=1.4e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=20.7
Q ss_pred hhhHHHHHhhhCccc----cccccCCCCc-----hhhhHHhhh
Q 044706 59 DCCRAIDIITRNCWP----AMFISLEFIA-----EEGNILRGY 92 (117)
Q Consensus 59 ~CCkAi~~i~~~CWP----~Mfps~pftp-----~e~~~Lkg~ 92 (117)
.+=|++.....+=+| .=||+++++. +|+|.||+|
T Consensus 90 ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Y 132 (178)
T 1k8k_E 90 QGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAY 132 (178)
T ss_dssp HHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHH
Confidence 344555444433343 2356666554 899999998
No 8
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=8.44 E-value=65 Score=18.48 Aligned_cols=10 Identities=30% Similarity=1.105 Sum_probs=7.1
Q ss_pred CccccccccC
Q 044706 70 NCWPAMFISL 79 (117)
Q Consensus 70 ~CWP~Mfps~ 79 (117)
.|||..-|-.
T Consensus 18 rcwptvtpgv 27 (33)
T 2knp_A 18 RCWPTVTPGV 27 (33)
T ss_dssp CEEECSSTTE
T ss_pred eeccccCCCe
Confidence 7999885543
No 9
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=8.01 E-value=1.5e+02 Score=17.99 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred cCCCCchhhhHHhhhcccC
Q 044706 78 SLEFIAEEGNILRGYCDAS 96 (117)
Q Consensus 78 s~pftp~e~~~Lkg~C~~~ 96 (117)
..+||+||-.+|-.|=.+-
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3689999999988776544
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=7.72 E-value=1.6e+02 Score=16.90 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=12.1
Q ss_pred CCCCchhhhHHhhhcc
Q 044706 79 LEFIAEEGNILRGYCD 94 (117)
Q Consensus 79 ~pftp~e~~~Lkg~C~ 94 (117)
-++|+||-+.|...-.
T Consensus 3 ~~WT~eEd~~L~~~v~ 18 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVR 18 (53)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4789999988876543
Done!