Query 044706
Match_columns 117
No_of_seqs 76 out of 78
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 10:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kyqa2 e.37.1.1 (A:151-273) B 11.4 41 0.003 22.1 1.2 16 79-94 108-123 (123)
2 d1gv2a2 a.4.1.3 (A:144-190) c- 11.2 44 0.0032 18.1 1.2 17 79-95 2-18 (47)
3 d1gvda_ a.4.1.3 (A:) c-Myb, DN 9.6 55 0.004 17.9 1.2 18 78-95 3-20 (52)
4 d1a9xa3 c.30.1.1 (A:1-127) Car 9.3 31 0.0022 23.0 -0.1 48 34-83 1-54 (127)
5 d1ppjd2 f.23.11.1 (D:196-241) 9.2 70 0.0051 17.8 1.6 17 1-17 9-25 (46)
6 d1bdsa_ g.9.1.1 (A:) BDs-I def 8.7 30 0.0022 19.4 -0.3 9 67-75 28-38 (43)
7 d1w0ta_ a.4.1.4 (A:) DNA-bindi 8.6 63 0.0046 17.6 1.2 17 79-95 3-19 (52)
8 d2ckxa1 a.4.1.3 (A:578-660) Te 7.4 62 0.0045 19.2 0.8 16 80-95 2-17 (83)
9 d1w0ua_ a.4.1.4 (A:) Telomeric 6.8 86 0.0062 17.1 1.2 17 79-95 3-19 (55)
10 d1diha1 c.2.1.3 (A:2-130,A:241 6.6 1.3E+02 0.0097 19.5 2.3 45 64-112 88-132 (162)
No 1
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.42 E-value=41 Score=22.10 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.6
Q ss_pred CCCCchhhhHHhhhcc
Q 044706 79 LEFIAEEGNILRGYCD 94 (117)
Q Consensus 79 ~pftp~e~~~Lkg~C~ 94 (117)
.|-+|++.+++++||+
T Consensus 108 ~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 108 SLQFPPRERLLSEYCS 123 (123)
T ss_dssp CCCCCCHHHHHHHSBC
T ss_pred CCCCCChhHHHHHhhC
Confidence 4667999999999995
No 2
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.23 E-value=44 Score=18.10 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=13.2
Q ss_pred CCCCchhhhHHhhhccc
Q 044706 79 LEFIAEEGNILRGYCDA 95 (117)
Q Consensus 79 ~pftp~e~~~Lkg~C~~ 95 (117)
-|||+||-++|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999876543
No 3
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.64 E-value=55 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.2
Q ss_pred cCCCCchhhhHHhhhccc
Q 044706 78 SLEFIAEEGNILRGYCDA 95 (117)
Q Consensus 78 s~pftp~e~~~Lkg~C~~ 95 (117)
--|+|++|-+.|+..-.+
T Consensus 3 rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999986544
No 4
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=9.31 E-value=31 Score=22.96 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=29.9
Q ss_pred CCCCcchhhHHhhccc-----cccce-ecChhhhHHHHHhhhCccccccccCCCCc
Q 044706 34 MKPSYDLATRLEASGG-----LTDQA-DIGPDCCRAIDIITRNCWPAMFISLEFIA 83 (117)
Q Consensus 34 ~~~~~~l~~rl~~~g~-----lnG~~-~iGp~CCkAi~~i~~~CWP~Mfps~pftp 83 (117)
||.-+|+.+-|=++.| ..+|| |-+..+|+|++..+.+ .-|.-+||.|-
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~--~iliN~NP~TV 54 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR--VINVNSNPATI 54 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE--EEEECSCTTCG
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe--EEEecCchHhh
Confidence 3445566665554443 36677 5777778888876654 55666777664
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.21 E-value=70 Score=17.83 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHHHH
Q 044706 1 MALKHMFFILALTCLIM 17 (117)
Q Consensus 1 Ma~k~~f~ll~v~~ii~ 17 (117)
|++|.+++|..++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777666655554
No 6
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=8.73 E-value=30 Score=19.44 Aligned_cols=9 Identities=56% Similarity=1.512 Sum_probs=6.0
Q ss_pred hhhCc--cccc
Q 044706 67 ITRNC--WPAM 75 (117)
Q Consensus 67 i~~~C--WP~M 75 (117)
-+.|| ||++
T Consensus 28 ytsncykwpni 38 (43)
T d1bdsa_ 28 YTSNCYKWPNI 38 (43)
T ss_dssp CCCEEEETTEE
T ss_pred cccccccCCcc
Confidence 34577 8876
No 7
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=63 Score=17.62 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.3
Q ss_pred CCCCchhhhHHhhhccc
Q 044706 79 LEFIAEEGNILRGYCDA 95 (117)
Q Consensus 79 ~pftp~e~~~Lkg~C~~ 95 (117)
-++|+||-+.|...-.+
T Consensus 3 ~~WT~eED~~L~~~v~~ 19 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSGVRK 19 (52)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999876544
No 8
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=7.43 E-value=62 Score=19.23 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.2
Q ss_pred CCCchhhhHHhhhccc
Q 044706 80 EFIAEEGNILRGYCDA 95 (117)
Q Consensus 80 pftp~e~~~Lkg~C~~ 95 (117)
|||+||-+.|.....+
T Consensus 2 ~WT~eEd~~L~~~V~~ 17 (83)
T d2ckxa1 2 PFSVAEVEALVEAVEH 17 (83)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999887655
No 9
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.78 E-value=86 Score=17.15 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=12.9
Q ss_pred CCCCchhhhHHhhhccc
Q 044706 79 LEFIAEEGNILRGYCDA 95 (117)
Q Consensus 79 ~pftp~e~~~Lkg~C~~ 95 (117)
.+||+||-+.|...-.+
T Consensus 3 ~~WT~eEd~~L~~~V~~ 19 (55)
T d1w0ua_ 3 QKWTVEESEWVKAGVQK 19 (55)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999998875443
No 10
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=6.57 E-value=1.3e+02 Score=19.54 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=34.5
Q ss_pred HHHhhhCccccccccCCCCchhhhHHhhhcccCCCCCCCCcccccccee
Q 044706 64 IDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQPQV 112 (117)
Q Consensus 64 i~~i~~~CWP~Mfps~pftp~e~~~Lkg~C~~~~~psP~~~a~~~~~~~ 112 (117)
+.....+-.|-+.-.-||..++-+.||.++.+ .|---|+||+-.+
T Consensus 88 ~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~----ipi~~apN~SlGi 132 (162)
T d1diha1 88 LAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD----IAIVFAANFSMTF 132 (162)
T ss_dssp HHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT----SCEEECSCCCHHH
T ss_pred HHHHHhccceeEEecCCCcHHHHHHHHHHcCC----CCEEEEccccHHH
Confidence 34445677999999999999999999998754 3557778887554
Done!