BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044707
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Query: 131 LGQPLQLSWEVIMEITDKFTTKALMGECKNYVGYLGYLSEYHAFVLVKRFTGDSSSILEA 190
LGQ + S + +D F+ K ++G Y G L++ V VKR + E
Sbjct: 22 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLAD-GTLVAVKRLKEERXQGGEL 80
Query: 191 EKKAAWSM----RHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQ 246
+ + M H+N+L L G+ + + +LVYP+ G++ + L P ++ L + +
Sbjct: 81 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPK 140
Query: 247 KLKIAIGIAEGVRYMHQEC-PRGPIAHGELQLHNIFL 282
+ +IA+G A G+ Y+H C P+ I H +++ NI L
Sbjct: 141 RQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILL 175
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 322 LIEWARPLMLQRKFHELLEEDL--DFSDMHGIYRVMAAATQCTISKPTSRPCMSEVL 376
L++W + L+ ++K L++ DL ++ D + +++ A CT S P RP MSEV+
Sbjct: 256 LLDWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVV 311
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Query: 131 LGQPLQLSWEVIMEITDKFTTKALMGECKNYVGYLGYLSEYHAFVLVKRFTGDSSSILEA 190
LGQ + S + +D F K ++G Y G L++ V VKR + + E
Sbjct: 14 LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLAD-GXLVAVKRLKEERTQGGEL 72
Query: 191 EKKAAWSM----RHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQ 246
+ + M H+N+L L G+ + + +LVYP+ G++ + L P ++ L + +
Sbjct: 73 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPK 132
Query: 247 KLKIAIGIAEGVRYMHQEC-PRGPIAHGELQLHNIFL 282
+ +IA+G A G+ Y+H C P+ I H +++ NI L
Sbjct: 133 RQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILL 167
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 322 LIEWARPLMLQRKFHELLEEDL--DFSDMHGIYRVMAAATQCTISKPTSRPCMSEVL 376
L++W + L+ ++K L++ DL ++ D + +++ A CT S P RP MSEV+
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVV 303
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Query: 123 KFSKAKLMLGQPLQLSWEV-----------IMEITDKFTTKALMGECKNYVGYLGYLSEY 171
K+SKA + L S+ V + E T+ F K L+G Y G L +
Sbjct: 4 KYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD- 62
Query: 172 HAFVLVKRFTGDSSSILEAEKKAAWSM---RHKNILGLLGYHQSDSASVLVYPHPREGTL 228
A V +KR T +SS +E + ++ RH +++ L+G+ + +L+Y + G L
Sbjct: 63 GAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNL 122
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNIFLRHDLRP 288
L S + + ++Q+L+I IG A G+ Y+H I H +++ NI L + P
Sbjct: 123 KRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA----IIHRDVKSINILLDENFVP 178
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Query: 123 KFSKAKLMLGQPLQLSWEV-----------IMEITDKFTTKALMGECKNYVGYLGYLSEY 171
K+SKA + L S+ V + E T+ F K L+G Y G L +
Sbjct: 4 KYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD- 62
Query: 172 HAFVLVKRFTGDSSSILEAEKKAAWSM---RHKNILGLLGYHQSDSASVLVYPHPREGTL 228
A V +KR T +SS +E + ++ RH +++ L+G+ + +L+Y + G L
Sbjct: 63 GAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNL 122
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNIFLRHDLRP 288
L S + + ++Q+L+I IG A G+ Y+H I H +++ NI L + P
Sbjct: 123 KRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA----IIHRDVKSINILLDENFVP 178
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 137 LSWEVIMEITDKFTTKAL------MGECKNYVGYLGYLSEYHAFV-----LVKRFTGDSS 185
S+ + +T+ F + + MGE V Y GY++ V +V T +
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 186 SILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYPH-PREGTLDNMLC--PSPHNELKL 242
+ E K +H+N++ LLG+ LVY + P LD + C +P L
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP----PL 130
Query: 243 KFQQKLKIAIGIAEGVRYMHQ 263
+ + KIA G A G+ ++H+
Sbjct: 131 SWHMRCKIAQGAANGINFLHE 151
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 137 LSWEVIMEITDKFTTKAL------MGECKNYVGYLGYLSEYHAFV-----LVKRFTGDSS 185
S+ + +T+ F + + MGE V Y GY++ V +V T +
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 186 SILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYPH-PREGTLDNMLC--PSPHNELKL 242
+ E K +H+N++ LLG+ LVY + P LD + C +P L
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP----PL 130
Query: 243 KFQQKLKIAIGIAEGVRYMHQ 263
+ + KIA G A G+ ++H+
Sbjct: 131 SWHMRCKIAQGAANGINFLHE 151
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 137 LSWEVIMEITDKFTTKAL------MGECKNYVGYLGYLSEYHAFV-----LVKRFTGDSS 185
S+ + +T+ F + + MGE V Y GY++ V +V T +
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 68
Query: 186 SILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYPH-PREGTLDNMLC--PSPHNELKL 242
+ E K +H+N++ LLG+ LVY + P LD + C +P L
Sbjct: 69 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP----PL 124
Query: 243 KFQQKLKIAIGIAEGVRYMHQ 263
+ + KIA G A G+ ++H+
Sbjct: 125 SWHMRCKIAQGAANGINFLHE 145
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 55 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 114
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 115 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 169
Query: 285 D 285
+
Sbjct: 170 N 170
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 30 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 89
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 90 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 144
Query: 285 D 285
+
Sbjct: 145 N 145
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 29 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 88
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 89 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 143
Query: 285 D 285
+
Sbjct: 144 N 144
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 68 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 127
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 128 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 182
Query: 285 D 285
+
Sbjct: 183 N 183
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 35 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 94
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 95 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 149
Query: 285 D 285
+
Sbjct: 150 N 150
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 175 VLVKRFTG--DSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F+ + S EAE +RH+NILG + D+ + LV + G+L
Sbjct: 32 VAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSL 91
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L N + + +K+A+ A G+ ++H E + IAH +L+ NI ++
Sbjct: 92 FDYL-----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 146
Query: 285 D 285
+
Sbjct: 147 N 147
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 137 LSWEVIMEITDKFTTKAL------MGECKNYVGYLGYLSEYHAFV-----LVKRFTGDSS 185
S+ + +T+ F + + GE V Y GY++ V +V T +
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 65
Query: 186 SILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYPH-PREGTLDNMLC--PSPHNELKL 242
+ E K +H+N++ LLG+ LVY + P LD + C +P L
Sbjct: 66 QQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTP----PL 121
Query: 243 KFQQKLKIAIGIAEGVRYMHQ 263
+ + KIA G A G+ ++H+
Sbjct: 122 SWHXRCKIAQGAANGINFLHE 142
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 198 MRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAEG 257
+RH NI+ +G +V + G+L +L S E +L +++L +A +A+G
Sbjct: 91 LRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGARE-QLDERRRLSMAYDVAKG 149
Query: 258 VRYMHQECPRGPIAHGELQLHNIFL 282
+ Y+H P PI H +L+ N+ +
Sbjct: 150 MNYLHNRNP--PIVHRDLKSPNLLV 172
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 198 MRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAEG 257
+RH NI+ +G +V + G+L +L S E +L +++L +A +A+G
Sbjct: 91 LRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGARE-QLDERRRLSMAYDVAKG 149
Query: 258 VRYMHQECPRGPIAHGELQLHNIFL 282
+ Y+H P PI H L+ N+ +
Sbjct: 150 MNYLHNRNP--PIVHRNLKSPNLLV 172
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 197 SMRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAE 256
++ H NI+ L G + V+ + G L + L H +K+ KL++ + IA
Sbjct: 79 NLNHPNIVKLYGLMHNPPRMVMEFVPC--GDLYHRLLDKAH---PIKWSVKLRLMLDIAL 133
Query: 257 GVRYMHQECPRGPIAHGELQLHNIFLR 283
G+ YM + P PI H +L+ NIFL+
Sbjct: 134 GIEYMQNQNP--PIVHRDLRSPNIFLQ 158
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 179 RFTGDSSSILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHN 238
RF ++ E K + H N+L +G D + + + GTL ++
Sbjct: 45 RFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGII---KSM 101
Query: 239 ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNIFLRHD 285
+ + + Q++ A IA G+ Y+H I H +L HN +R +
Sbjct: 102 DSQYPWSQRVSFAKDIASGMAYLHSM----NIIHRDLNSHNCLVREN 144
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 197 SMRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAE 256
++ H NI+ L G + V+ + G L + L H +K+ KL++ + IA
Sbjct: 79 NLNHPNIVKLYGLMHNPPRMVMEFVPC--GDLYHRLLDKAH---PIKWSVKLRLMLDIAL 133
Query: 257 GVRYMHQECPRGPIAHGELQLHNIFLR 283
G+ YM + P PI H +L+ NIFL+
Sbjct: 134 GIEYMQNQNP--PIVHRDLRSPNIFLQ 158
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 197 SMRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAE 256
++ H NI+ L G + V+ + G L + L H +K+ KL++ + IA
Sbjct: 79 NLNHPNIVKLYGLMHNPPRMVMEFVPC--GDLYHRLLDKAH---PIKWSVKLRLMLDIAL 133
Query: 257 GVRYMHQECPRGPIAHGELQLHNIFLR 283
G+ YM + P PI H +L+ NIFL+
Sbjct: 134 GIEYMQNQNP--PIVHRDLRSPNIFLQ 158
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + + +
Sbjct: 41 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STAPQLAIVT 98
Query: 222 HPREGT-LDNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L + L S E K + ++ + IA A G+ Y+H + I H +L+ +NI
Sbjct: 99 QWCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGMDYLHAKS----IIHRDLKSNNI 151
Query: 281 FLRHD 285
FL D
Sbjct: 152 FLHED 156
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 29 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 86
Query: 222 HPREGT-LDNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L + L S E K + ++ + IA A G+ Y+H + I H +L+ +NI
Sbjct: 87 QWCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGMDYLHAKS----IIHRDLKSNNI 139
Query: 281 FLRHD 285
FL D
Sbjct: 140 FLHED 144
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 41 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 98
Query: 222 HPREGT-LDNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L + L S E K + ++ + IA A G+ Y+H + I H +L+ +NI
Sbjct: 99 QWCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGMDYLHAKS----IIHRDLKSNNI 151
Query: 281 FLRHD 285
FL D
Sbjct: 152 FLHED 156
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 15/149 (10%)
Query: 147 DKFTTKALMGECKNYVGYLGYLSEYHAFVLVKRFTGDSSSILEAEKKAAWSMRHKNILGL 206
D L+G + Y G L E V V F + I E M H NI
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARF 72
Query: 207 LGYHQSDSAS-----VLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYM 261
+ + +A +LV + G+L L S H + ++A + G+ Y+
Sbjct: 73 IVGDERVTADGRMEYLLVMEYYPNGSLXKYL--SLHTS---DWVSSCRLAHSVTRGLAYL 127
Query: 262 HQECPRG-----PIAHGELQLHNIFLRHD 285
H E PRG I+H +L N+ +++D
Sbjct: 128 HTELPRGDHYKPAISHRDLNSRNVLVKND 156
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 162 VGYLGYLSEYHAF-----VLVKRFTGD-----SSSI--LEAEKKAAWSMRHKNILGLLGY 209
+G G+ Y AF V VK D S +I + E K ++H NI+ L G
Sbjct: 15 IGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74
Query: 210 HQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQECPRGP 269
+ LV R G L+ +L ++ + A+ IA G+ Y+H E P
Sbjct: 75 CLKEPNLCLVMEFARGGPLNRVLSGK-----RIPPDILVNWAVQIARGMNYLHDEAIV-P 128
Query: 270 IAHGELQLHNIFL 282
I H +L+ NI +
Sbjct: 129 IIHRDLKSSNILI 141
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVKRF--TGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + + +
Sbjct: 25 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STAPQLAIVT 82
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 83 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 135
Query: 281 FLRHDL 286
FL DL
Sbjct: 136 FLHEDL 141
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVKRF-----TGDSSSILEAEKKAAWSMRHKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + E RH NIL +GY D+ +++
Sbjct: 53 YKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT-- 110
Query: 222 HPREGTLDNMLCPSPH-NELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
+ + L H E K + Q + IA A+G+ Y+H + I H +++ +NI
Sbjct: 111 ---QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNI 163
Query: 281 FLRHDL 286
FL L
Sbjct: 164 FLHEGL 169
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 175 VLVKRF--TGDSSSILEAEKKAAWSMRHKNILGLLGYHQSDSAS----VLVYPHPREGTL 228
V VK F T ++S E E MRH+NILG + + S L+ + G+L
Sbjct: 63 VAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSL 122
Query: 229 DNMLCPSPHNELKLKFQQKLKIAIGIAEGVRYMHQEC----PRGPIAHGELQLHNIFLRH 284
+ L L + LK+A G+ ++H E + IAH +L+ NI ++
Sbjct: 123 YDYL-----KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKK 177
Query: 285 D 285
+
Sbjct: 178 N 178
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 45 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 102
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 103 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 155
Query: 281 FLRHDL 286
FL DL
Sbjct: 156 FLHEDL 161
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 53 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 110
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 111 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 163
Query: 281 FLRHDL 286
FL DL
Sbjct: 164 FLHEDL 169
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 53 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 110
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 111 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 163
Query: 281 FLRHDL 286
FL DL
Sbjct: 164 FLHEDL 169
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 52 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 109
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 110 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 162
Query: 281 FLRHDL 286
FL DL
Sbjct: 163 FLHEDL 168
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 30 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 87
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 88 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 140
Query: 281 FLRHDL 286
FL DL
Sbjct: 141 FLHEDL 146
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 30 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 87
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 88 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 140
Query: 281 FLRHDL 286
FL DL
Sbjct: 141 FLHEDL 146
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVKRF--TGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 25 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 82
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 83 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 135
Query: 281 FLRHDL 286
FL DL
Sbjct: 136 FLHEDL 141
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 25 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 82
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 83 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 135
Query: 281 FLRHDL 286
FL DL
Sbjct: 136 FLHEDL 141
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 167 YLSEYHAFVLVK--RFTGDSSSILEAEKKAAWSMR---HKNILGLLGYHQSDSASVLVYP 221
Y ++H V VK T + L+A K +R H NIL +GY S + +
Sbjct: 27 YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--STKPQLAIVT 84
Query: 222 HPREGTLDNMLCPSPHN-ELKLKFQQKLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNI 280
EG+ L H E K + + + IA A+G+ Y+H + I H +L+ +NI
Sbjct: 85 QWCEGS---SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNI 137
Query: 281 FLRHDL 286
FL DL
Sbjct: 138 FLHEDL 143
>pdb|2D9M|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 3 In
Zinc Finger Ccch-Type Domain Containing 7a
Length = 69
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 259 RYMHQECPRG---PIAHGELQLHNIFLRHDLRPMRINAIT 295
RYM+ CP G AHG +LH R D M++N +
Sbjct: 25 RYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML----------CPSP-HN-ELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L C +P HN E +L +
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 151
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 152 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 186
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML----------CPSP-HN-ELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L C +P HN E +L +
Sbjct: 77 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 136
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 137 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 171
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKD 151
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 152 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 186
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 85 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 144
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 145 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 179
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 81 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 140
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 141 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 175
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 20/156 (12%)
Query: 139 WEVIMEITDKFTTKALMGE-CKNYVGYLGYLSEYHAF------VLVKRFTGDS-SSILEA 190
W E K+ K ++G + V + + H F V +R + + + EA
Sbjct: 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREA 145
Query: 191 EKKAAWSMR----HKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQ 246
++ +R H +I+ L+ ++S S LV+ R+G L + L ++ L ++
Sbjct: 146 TRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLT----EKVALSEKE 201
Query: 247 KLKIAIGIAEGVRYMHQECPRGPIAHGELQLHNIFL 282
I + E V ++H I H +L+ NI L
Sbjct: 202 TRSIMRSLLEAVSFLHA----NNIVHRDLKPENILL 233
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 151
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 152 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 186
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 198 MRHKNILGLLGYHQSDSASVLVYPHPREGTLDNMLCPSPHNELKLKFQQKLKIAIGIAEG 257
+ H N++ L +S + VLV + G L + + +N +L +K I EG
Sbjct: 143 LDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMK---QICEG 199
Query: 258 VRYMHQECPRGPIAHGELQLHNIF-LRHDLRPMRI 291
+R+MHQ I H +L+ NI + D + ++I
Sbjct: 200 IRHMHQMY----ILHLDLKPENILCVNRDAKQIKI 230
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 92 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKD 151
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 152 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 186
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 84 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 143
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 144 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 178
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 199 RHKNILGLLGYHQSDSASVLVYPHPREGTLDNML------------CPSPHNELKLKFQQ 246
+HKNI+ LLG D ++ + +G L L PS + E +L +
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192
Query: 247 KLKIAIGIAEGVRYM-HQECPRGPIAHGELQLHNIFLRHD 285
+ A +A G+ Y+ ++C H +L N+ + D
Sbjct: 193 LVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTED 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,039,811
Number of Sequences: 62578
Number of extensions: 355262
Number of successful extensions: 990
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 64
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)