BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044708
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
E+TCP+CLE + +P+SL CGH LC+ C +VS + + + CP+C
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRAC----ITVSNKEAVTSMGGKSSCPVC 59
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S++D + CP+CR
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGE-----SSCPVCR 66
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + ++ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +PVS C H C+ C + + D + CP+CR
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCR 66
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
C +CL+T PVSL C H+ C +C A+ + ++C LCRQ
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-----------KRCALCRQ 57
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 199 DSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
D+I E C +C+E + +PV+L C H LCK C S V+ L CP CR
Sbjct: 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCF-----QSTVEKASLC-----CPFCR 57
Query: 259 Q 259
+
Sbjct: 58 R 58
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMC 232
L +E +C VCLE + +PV + CGH CK C
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKAC 41
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
+L E+ CP+CL+ + PV++ CGH C C S KCPLC
Sbjct: 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--------GFFKCPLC 63
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.4 bits (80), Expect = 0.042, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
RL E TC VCL+ V + CGH++C CA GL+L CP+CR
Sbjct: 9 RLQEERTCKVCLDRAVSIVFVPCGHLVCAECA---------PGLQL------CPICR 50
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
+L E+ CP+CL+ + PV++ CGH C C S G KCPLC+ +
Sbjct: 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GF------FKCPLCKTS 66
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR---Q 259
L+ EL C +C E + V+L C H C C I +CP+CR +
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRKDIK 98
Query: 260 ASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQ 298
+ + L L IN N E E+R+ + R + K+
Sbjct: 99 SKTYSLVLD-NXINKMVNNLSSEVKERRIVLIRERKAKR 136
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
RL E TC VC++ V + CGH ++CK CA S KCP+CR
Sbjct: 20 RLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL---------------RKCPICR 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR---Q 259
L+ EL C +C E + V+L C H C C I +CP+CR +
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRKDIK 109
Query: 260 ASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQ 298
+ + L L IN N E E+R+ + R + K+
Sbjct: 110 SKTYSLVLD-NCINKMVNNLSSEVKERRIVLIRERKAKR 147
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR---Q 259
L+ EL C +C E + V+L C H C C I +CP+CR +
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRKDIK 98
Query: 260 ASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQ 298
+ + L L IN N E E+R+ + R + K+
Sbjct: 99 SKTYSLVLD-NCINKMVNNLSSEVKERRIVLIRERKAKR 136
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
RL E TC VC++ V + CGH ++C+ CA S KCP+CR
Sbjct: 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICR 333
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 207 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
++CP+C++ + V S CGH+ C C + D LK A+ CP CR+
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 56
Query: 260 ASVFMLFLQIYLING---CYINSCREYWEKRLQIERVERVKQAKEYWENQC 307
+ IY+ +G C I C + + + +Q R+ + + +QC
Sbjct: 57 KINHKRYHPIYIGSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQC 105
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 207 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
++CP+C++ + V S CGH+ C C + D LK A+ CP CR+
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 121
Query: 260 ASVFMLFLQIYL 271
+ IY+
Sbjct: 122 KINHKRYHPIYI 133
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 170 SSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILC 229
SS + +GY + F+ L+ + CP+CL + + V CGH C
Sbjct: 2 SSGSSGMEEIQGYDVEFDPP-------------LESKYECPICLMALREAVQTPCGHRFC 48
Query: 230 KMC 232
K C
Sbjct: 49 KAC 51
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 198 FDSIRLDIELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREK 253
D++R +E CP+C+E+ + P L CGH +C+ C S ++G+ +
Sbjct: 9 LDALREVLE--CPICMESFTEEQLRPKLLHCGHTICRQCL-EKLLASSINGV-------R 58
Query: 254 CPLCRQASVFMLFLQI 269
CP C + + Q+
Sbjct: 59 CPFCSKITRITSLTQL 74
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 207 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
++CP+C++ + V S CGH+ C C + D LK A+ CP CR+
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 59
Query: 260 ASVFMLFLQIYL 271
+ IY+
Sbjct: 60 KINHKRYHPIYI 71
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 207 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
++CP+C++ + V S CGH+ C C + D LK A+ CP CR+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 52
Query: 260 ASVFMLFLQIYL 271
+ IY+
Sbjct: 53 KINHKRYHPIYI 64
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMC 232
L+ + CP+CL + + V CGH CK C
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKAC 44
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMC 232
L+ + CP+CL + + V CGH CK C
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKAC 44
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMC 232
L + CP+CL + + V CGH CK C
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKAC 32
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
+L+ C C E V+ PV+ C H +CK C + + CP CR
Sbjct: 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFS----------CPACRH 121
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C S
Sbjct: 15 EQFELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQE---------- 59
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 60 SEGQGCPFCR 69
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMC 232
++C +C + DPV +C H+ C++C
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRIC 49
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C S
Sbjct: 322 EQFELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 368
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 369 --GQGCPFCR 376
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 201 IRLDIELTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPREK 253
+R ++CP+C++ + V S CGH+ C C + D LK A+
Sbjct: 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---T 58
Query: 254 CPLCRQ 259
CP CR+
Sbjct: 59 CPTCRK 64
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 177 MSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSA 236
M S+ ++T ++ L CE+ + +L C +C E D CGH++C C +
Sbjct: 4 MGSDHIKVT--QEQYELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTAW 56
Query: 237 ASVSIVDGLKLADPREKCPLCR 258
DG + CP CR
Sbjct: 57 QE---SDG-------QGCPFCR 68
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 196 ELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMC 232
+LF S +++ C C E VF P++ C H +CK C
Sbjct: 43 QLFLS-KVEETFQCICCQELVFRPITTVCQHNVCKDC 78
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C + DG
Sbjct: 326 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTAWQE---SDG---- 373
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 374 ---QGCPFCR 380
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C S
Sbjct: 322 EQYELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 368
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 369 --GQGCPFCR 376
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus
Length = 334
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 88 KRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQ 126
K+A+KLINL++ G++K + IK +G + ++E+
Sbjct: 114 KKARKLINLYKNFGIEKERILIKIAATWEGIKAAEILEK 152
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C S
Sbjct: 320 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 366
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 367 --GQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
++ L CE+ + +L C +C E D CGH++C C S
Sbjct: 320 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 366
Query: 249 DPREKCPLCR 258
+ CP CR
Sbjct: 367 --GQGCPFCR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,842,134
Number of Sequences: 62578
Number of extensions: 285720
Number of successful extensions: 915
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 50
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)