BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044708
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1
PE=1 SV=1
Length = 335
Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 218/345 (63%), Gaps = 42/345 (12%)
Query: 1 MKFCKKYEEYMQQKQQK--LPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKIT 58
MKFCKKYEEYMQ +++K LP V KKLKKILK+CR P S D +
Sbjct: 1 MKFCKKYEEYMQGQKEKKNLPGVGFKKLKKILKRCR----RNHVPSRISFTDAINH---- 52
Query: 59 SCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGT 118
+C CPVCDG FFP L+ +M VV +FN+ A+KL+ LH A+G K W++G + +
Sbjct: 53 NCSRECPVCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGNSRKKDH 112
Query: 119 HVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLR 155
H LI++GK+LV YALINA+ IRKILKKYDK SPWL
Sbjct: 113 H--GLIQEGKDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQSPWLC 170
Query: 156 ELMALHINLGETNVSSSTMAAMSS-------EGYRLTFNDDKLSLSCELFDSIRLDIELT 208
ELMA HINL E+ S +G LTF+D K LSCEL DS+++DI+LT
Sbjct: 171 ELMAFHINLKESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVDIDLT 230
Query: 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ 268
C +CL+TVFDP+SLTCGHI C MCACSAASV++VDGLK A+ EKCPLCR+ V+ +
Sbjct: 231 CSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVH 290
Query: 269 IYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
+ +N SCR+YWE+R + ER ER++QAKEYW+ QCR+F GI
Sbjct: 291 LDELNILLKRSCRDYWEERRKTERAERLQQAKEYWDYQCRSFTGI 335
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 314 bits (805), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 171/336 (50%), Positives = 226/336 (67%), Gaps = 38/336 (11%)
Query: 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
MKF KKYE+YM+ ++LP V K+LKK+LKKCR QS ++ S++ C
Sbjct: 1 MKFAKKYEKYMKGMDEELPGVGLKRLKKLLKKCRSDLQSHENDGSSAG----------RC 50
Query: 61 HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
C VCDG+FFP+L+N+MSAVV FN++AKKL+ LH A+G KKY +W K G +H
Sbjct: 51 PGHCSVCDGSFFPSLLNEMSAVVGCFNEKAKKLLELHLASGFKKYTMWFTSK--GHKSH- 107
Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
+LI+QGK+LV YA+INA+ +RKILKKYDK SPWL EL
Sbjct: 108 GALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKAQAQSLHIEILQSPWLCEL 167
Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
MA ++NL + ++ M L F+DDK ++SC LFDS+R+DI LTC +CL+TVF
Sbjct: 168 MAFYMNLRRSKKNNGAMELFGD--CSLVFDDDKPTISCNLFDSMRVDISLTCSICLDTVF 225
Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
DPV+L+CGHI C +C+CSAASV+IVDGLK A+ + KCPLCRQA VF + + +N
Sbjct: 226 DPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLS 285
Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
SC EYWEKR+Q+ERVERV+ AKE+WE+QCRAF+G+
Sbjct: 286 YSCPEYWEKRIQMERVERVRLAKEHWESQCRAFLGM 321
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 170/336 (50%), Positives = 226/336 (67%), Gaps = 38/336 (11%)
Query: 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
MKF KKYE+YM+ ++LP V K+LKK+LKKCR QS ++ S++ C
Sbjct: 1 MKFAKKYEKYMKGMDEELPGVGLKRLKKLLKKCRSDLQSHENDGSSAG----------RC 50
Query: 61 HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
C VCDG+FFP+L+N+MSAV+ FN++AKKL+ LH A+G KKY +W K G +H
Sbjct: 51 PGHCSVCDGSFFPSLLNEMSAVIGCFNEKAKKLLELHLASGFKKYTMWFTSK--GHKSH- 107
Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
+LI+QGK+LV YA+INA+ +RKILKKYDK SPWL EL
Sbjct: 108 GALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKAQAQSLHIEILQSPWLCEL 167
Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
MA ++NL + ++ M L F+DDK ++SC LFDS+R+DI LTC +CL+TVF
Sbjct: 168 MAFYMNLRRSKKNNGAMELFGD--CSLVFDDDKPTISCNLFDSMRVDISLTCSICLDTVF 225
Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
DPV+L+CGHI C +C+CSAASV+IVDGLK A+ + KCPLCRQA VF + + +N
Sbjct: 226 DPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLS 285
Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
SC EYWEKR+Q+ERVERV+ AKE+WE+QCRAF+G+
Sbjct: 286 YSCPEYWEKRIQMERVERVRLAKEHWESQCRAFLGM 321
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 207 bits (527), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 36/344 (10%)
Query: 1 MKFCKKYEEYMQQKQQKL----PKVACKKLKKILKKCRLACQSQKD-PESNSNADGVAQI 55
MKF YEEY++++Q K V K+LKK+LKKCR+ Q+D P +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQEGNNESP 60
Query: 56 KITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQG 115
I C N C +CD FF L + S + F+ R ++L+NLH +G +Y ++ Q
Sbjct: 61 DICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVR---QC 116
Query: 116 QGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SP 152
++++G+ L+ Y +NAI IRKILKKYDK SP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 153 WLRELMALHINLGETNVSSSTMAAMSSEGYR---LTFNDDKLSLSCELFDSIRLDIELTC 209
WL EL A H+N +++ T+ + +E ++ + + ++ + ++++ + LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDE-TVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTC 235
Query: 210 PVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQI 269
P+CL+T+F+P +L+CGH+ CK CAC AASV I G+K A P KCP+CR VF + +
Sbjct: 236 PICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHM 295
Query: 270 YLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
++ ++YW +RL+ ER E VKQ+KEYW++Q MGI
Sbjct: 296 TELDLLIKTRSKDYWRQRLREERNEMVKQSKEYWDSQAMLSMGI 339
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 207 bits (527), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 36/344 (10%)
Query: 1 MKFCKKYEEYMQQKQQKL----PKVACKKLKKILKKCRLACQSQKD-PESNSNADGVAQI 55
MKF YEEY++++Q K V K+LKK+LKKCR+ Q+D P +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQEGNNESP 60
Query: 56 KITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQG 115
I C N C +CD FF L + S + F+ R ++L+NLH +G +Y ++ Q
Sbjct: 61 DICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVR---QC 116
Query: 116 QGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SP 152
++++G+ L+ Y +NAI IRKILKKYDK SP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 153 WLRELMALHINLGETNVSSSTMAAMSSEGYR---LTFNDDKLSLSCELFDSIRLDIELTC 209
WL EL A H+N +++ T+ + +E ++ + + ++ + ++++ + LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDE-TVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTC 235
Query: 210 PVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQI 269
P+CL+T+F+P +L+CGH+ CK CAC AASV I G+K A P KCP+CR VF + +
Sbjct: 236 PICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHM 295
Query: 270 YLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
++ ++YW +RL+ ER E VKQ+KEYW++Q MGI
Sbjct: 296 TELDLLIKTRSKDYWRQRLREERNEMVKQSKEYWDSQAMLSMGI 339
>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis
thaliana GN=RF178 PE=2 SV=1
Length = 335
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 176/352 (50%), Gaps = 58/352 (16%)
Query: 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRL--------------ACQSQKDPESN 46
MKF + + EY+ +++ L+KCR C S K +
Sbjct: 1 MKFGETFTEYLHGEEEWF-----------LEKCRFVEYKKLKKVLKKCKTCNSTKSDDGQ 49
Query: 47 SNADGVAQIKITSCH-NRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKY 105
+ SC CP CD FF L+ + + + +F R + L++LH A G+++Y
Sbjct: 50 IIPSATSSSLSDSCECKACPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRY 109
Query: 106 FLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK--------------- 150
+ ++ + +L+++G+ L+ Y +NAI IRKILKKYDK
Sbjct: 110 MIRLRRCFTDEK---QALVQEGQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMR 166
Query: 151 --------SPWLRELMALHINLGETNVSS--STMAAMSSEGYRLTFNDDKLSLSCELFDS 200
SPWL EL A ++N G NV + ++ ++ E N+D+ L L +S
Sbjct: 167 AERIELLHSPWLIELGAFYLNSGLDNVGNFKNSFGRVACE----NLNEDQPVLKLMLPNS 222
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
I L+ +LTC +CLETVF+P +L CGHI C CACSAASV I G+K A KCP+CR+A
Sbjct: 223 IELEYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREA 282
Query: 261 SVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMG 312
V+ + + ++ +EYW++R+ ER E VKQ+K +W Q + +G
Sbjct: 283 GVYAEAVHMIELHLLLKTRSKEYWKERMMNERSEMVKQSKMFWNEQTKHMIG 334
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S+ DG + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGER------SCPVCR 58
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 200 SIRLDIE--LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
S+++DIE +TCP+CLE + +P+SL CGH C+ C + S++ ++ CP+C
Sbjct: 4 SVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVI----ISRGESSCPVC 59
Query: 258 R 258
+
Sbjct: 60 Q 60
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2
SV=1
Length = 488
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 197 LFDSIRLDI--ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKC 254
+ ++ +DI E+TCP+CLE + +P+S+ CGH C++C ++ S+ R C
Sbjct: 1 MTSTVLVDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFG----QGGRSSC 56
Query: 255 PLCRQA 260
P+CR +
Sbjct: 57 PVCRTS 62
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S+ D + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPD-----EGERSCPVCR 59
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S+ D + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPD-----EGERSCPVCR 59
>sp|Q5C8U4|TRIM5_CERPY Tripartite motif-containing protein 5 OS=Cercopithecus pygerythrus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH LC+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSLCQACITANHKESML----YKEEERSCPVCR 60
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia GN=TRIM5
PE=3 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S+ L CPLCR
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKKSM-----LHQGERSCPLCR 59
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S+ L CPLCR
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESM-----LHQGERSCPLCR 59
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S+ L CPLCR
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESM-----LHQGERSCPLCR 59
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S+ D + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPD-----EGERSCPVCR 59
>sp|Q5D7H8|TRIM5_CALDO Tripartite motif-containing protein 5 OS=Callicebus donacophilus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
+ + E+TCP+CLE + +P+SL CGH C+ C + S L CPLCR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKEST-----LHQGERSCPLCR 59
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
L+ E+TC +CL+ + DPV++ CGH+ C+ C +S R CPLC++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPIS--------GSRPVCPLCKK 58
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
L+ E+TC +CL+ + DPV++ CGH+ C+ C +S R CPLC++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPIS--------GSRPVCPLCKK 58
>sp|Q5D7I5|TRIM5_CALPY Tripartite motif-containing protein 5 OS=Callithrix pygmaea
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
+ + E+TCP+CLE + +P+SL CGH C+ C + S L CPLCR +
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKEST-----LHQGERSCPLCRMS 61
>sp|Q5D7I1|TRIM5_ATEGE Tripartite motif-containing protein 5 OS=Ateles geoffroyi GN=TRIM5
PE=2 SV=1
Length = 547
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S L CPLCR
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKEST-----LHQGERSCPLCR 59
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
L+ E+TC +CL+ + DPV++ CGH+ C+ C VS R CPLC++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVS--------GGRPVCPLCKK 58
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHKESML----YKEEERSCPVCR 60
>sp|Q5D7I3|TRIM5_ERYPA Tripartite motif-containing protein 5 OS=Erythrocebus patas
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHKKSML----YKEEERSCPVCR 60
>sp|Q587N7|TRIM5_CHLAE Tripartite motif-containing protein 5 OS=Chlorocebus aethiops
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHKESML----YKEEERSCPVCR 60
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + R+ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQRKGPSQCPLCK 65
>sp|Q5C8U1|TRIM5_SAGLB Tripartite motif-containing protein 5 OS=Saguinus labiatus GN=TRIM5
PE=2 SV=1
Length = 494
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLC 257
+ + E+TCP+CLE + +P+SL CGH C+ C I K + P + CPLC
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQAC--------ITANHKESTPHQGERSCPLC 58
Query: 258 RQA 260
R +
Sbjct: 59 RMS 61
>sp|Q9BYJ4|TRI34_HUMAN Tripartite motif-containing protein 34 OS=Homo sapiens GN=TRIM34
PE=1 SV=2
Length = 488
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
E+TCP+CLE + +P+SL CGH LC+ C +VS + + + CP+C
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRAC----ITVSNKEAVTSMGGKSSCPVC 59
>sp|Q1ACD5|TRIM5_SAGOE Tripartite motif-containing protein 5 OS=Saguinus oedipus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLC 257
+ + E+TCP+CLE + +P+SL CGH C+ C I K + P + CPLC
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQAC--------ITANHKESTPHQGERSCPLC 58
Query: 258 RQA 260
R +
Sbjct: 59 RMS 61
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S++D + + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKGESS-----CPVCR 59
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3
SV=1
Length = 493
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S++D CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD-----KGESSCPVCR 59
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S++D CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD-----KGESSCPVCR 59
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1
SV=1
Length = 493
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S++D CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD-----KGESSCPVCR 59
>sp|Q5C8T8|TRIM5_PONAB Tripartite motif-containing protein 5 OS=Pongo abelii GN=TRIM5 PE=2
SV=1
Length = 493
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S +D + + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERS-----CPVCR 59
>sp|Q2YEM9|TRIM5_PONPY Tripartite motif-containing protein 5 OS=Pongo pygmaeus GN=TRIM5
PE=2 SV=1
Length = 493
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + P+SL CGH C+ C + S +D + + CP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERS-----CPVCR 59
>sp|Q0PF16|TRIM5_MACMU Tripartite motif-containing protein 5 OS=Macaca mulatta GN=TRIM5
PE=1 SV=2
Length = 497
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q5D7J2|TRIM5_PAPAN Tripartite motif-containing protein 5 OS=Papio anubis GN=TRIM5 PE=3
SV=1
Length = 497
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHRKSML----YKEGERSCPVCR 60
>sp|Q2YEN2|TRIM5_MACAS Tripartite motif-containing protein 5 OS=Macaca assamensis GN=TRIM5
PE=3 SV=1
Length = 497
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREK-CPLCR 258
+ + E+TCP+CLE + +P+SL CGH C+ C + S RE+ CPLCR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKES----------RERSCPLCR 55
>sp|Q587N6|TRIM5_MACFA Tripartite motif-containing protein 5 OS=Macaca fascicularis
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
+ + E+TCP+CL+ + +P+SL CGH C+ C + S L CPLCR
Sbjct: 7 VNIKEEVTCPICLDLLTEPLSLDCGHSFCQACITADHKEST-----LHQGERSCPLCR 59
>sp|Q2YEN0|TRIM5_MACNE Tripartite motif-containing protein 5 OS=Macaca nemestrina GN=TRIM5
PE=3 SV=1
Length = 495
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 12 EVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q5D7J0|TRIM5_COLGU Tripartite motif-containing protein 5 OS=Colobus guereza GN=TRIM5
PE=3 SV=1
Length = 495
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
+ + E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q5D7I9|TRIM5_PYGNE Tripartite motif-containing protein 5 OS=Pygathrix nemaeus GN=TRIM5
PE=3 SV=1
Length = 495
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
+ + E+TCP+CLE + +P+SL CGH C+ C + S++ + CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSML----YKEGERSCPVCR 60
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
L+ E+TC +CL+ + DPV++ CGH+ C+ C +S R CPLC++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPIS--------GNRPVCPLCKK 58
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
L+ E+TC +CL+ + DPV++ CGH+ C+ C +S R CPLC++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPIS--------GNRPVCPLCKKP 59
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + ++ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + ++ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + ++ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
L CP+CLE + +PVS C HI CK C LKL + ++ +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,217,548
Number of Sequences: 539616
Number of extensions: 4105606
Number of successful extensions: 16927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 16417
Number of HSP's gapped (non-prelim): 630
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)