Query 044708
Match_columns 313
No_of_seqs 372 out of 1754
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 99.9 6E-23 1.3E-27 185.7 11.0 123 1-152 1-134 (310)
2 PF03105 SPX: SPX domain; Int 99.9 1.2E-22 2.7E-27 184.7 7.1 94 1-95 1-120 (275)
3 KOG1162 Predicted small molecu 99.8 1.5E-20 3.3E-25 184.8 7.6 137 1-150 1-163 (617)
4 COG5036 SPX domain-containing 99.5 1.3E-13 2.9E-18 128.1 9.8 123 1-153 1-128 (509)
5 PF15227 zf-C3HC4_4: zinc fing 99.4 8.2E-14 1.8E-18 91.0 3.7 42 209-257 1-42 (42)
6 TIGR00599 rad18 DNA repair pro 99.4 1.7E-13 3.7E-18 130.0 6.3 91 185-290 5-95 (397)
7 smart00504 Ubox Modified RING 99.3 3E-12 6.5E-17 91.0 4.4 61 206-281 1-61 (63)
8 KOG0287 Postreplication repair 99.3 3.6E-12 7.8E-17 115.7 4.3 79 197-290 14-92 (442)
9 COG5408 SPX domain-containing 99.2 1.9E-11 4.2E-16 110.9 7.2 86 1-87 1-99 (296)
10 PLN03208 E3 ubiquitin-protein 99.2 7.5E-12 1.6E-16 107.0 4.1 64 203-266 15-83 (193)
11 PF04564 U-box: U-box domain; 99.2 1.9E-11 4.1E-16 89.8 5.7 69 204-286 2-70 (73)
12 PF14835 zf-RING_6: zf-RING of 99.1 2.5E-11 5.5E-16 84.8 1.0 61 203-280 4-65 (65)
13 PF13923 zf-C3HC4_2: Zinc fing 99.1 7.4E-11 1.6E-15 75.8 2.4 38 209-257 1-39 (39)
14 COG5432 RAD18 RING-finger-cont 99.0 1.7E-10 3.8E-15 102.9 4.9 76 196-286 15-90 (391)
15 KOG0317 Predicted E3 ubiquitin 99.0 9E-11 1.9E-15 105.1 2.9 52 204-266 237-288 (293)
16 KOG0823 Predicted E3 ubiquitin 99.0 1.1E-10 2.3E-15 101.7 2.0 56 204-267 45-100 (230)
17 PF13920 zf-C3HC4_3: Zinc fing 99.0 2E-10 4.4E-15 77.9 2.7 47 205-262 1-48 (50)
18 PHA02929 N1R/p28-like protein; 99.0 3.2E-10 7E-15 100.9 3.0 49 204-263 172-228 (238)
19 KOG0320 Predicted E3 ubiquitin 98.9 6.8E-10 1.5E-14 92.8 3.7 52 204-266 129-182 (187)
20 PF00097 zf-C3HC4: Zinc finger 98.9 1E-09 2.2E-14 71.2 2.6 40 209-257 1-41 (41)
21 PF13445 zf-RING_UBOX: RING-ty 98.9 8.1E-10 1.8E-14 72.2 1.9 39 209-255 1-43 (43)
22 PF13639 zf-RING_2: Ring finge 98.9 5.8E-10 1.3E-14 73.6 1.2 40 208-258 2-44 (44)
23 KOG2660 Locus-specific chromos 98.8 3.6E-09 7.8E-14 96.6 3.2 89 202-301 11-100 (331)
24 PHA02926 zinc finger-like prot 98.8 5.8E-09 1.3E-13 90.4 3.8 57 202-263 166-231 (242)
25 KOG2177 Predicted E3 ubiquitin 98.7 5.7E-09 1.2E-13 95.5 3.3 68 202-286 9-76 (386)
26 cd00162 RING RING-finger (Real 98.7 1.1E-08 2.3E-13 66.8 3.1 43 208-260 1-44 (45)
27 PF14634 zf-RING_5: zinc-RING 98.7 1.3E-08 2.8E-13 67.1 3.3 41 208-259 1-44 (44)
28 KOG2164 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 96.0 3.1 54 206-265 186-239 (513)
29 smart00184 RING Ring finger. E 98.6 4.2E-08 9E-13 61.7 3.3 39 209-257 1-39 (39)
30 KOG0311 Predicted E3 ubiquitin 98.6 6.9E-09 1.5E-13 95.3 -0.7 75 198-282 35-111 (381)
31 COG5574 PEX10 RING-finger-cont 98.6 2.3E-08 5E-13 88.7 2.4 53 204-265 213-265 (271)
32 KOG4159 Predicted E3 ubiquitin 98.5 8.8E-08 1.9E-12 91.4 4.5 76 203-289 81-157 (398)
33 TIGR00570 cdk7 CDK-activating 98.5 4E-07 8.7E-12 83.6 7.3 51 205-265 2-57 (309)
34 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.9E-06 4E-11 63.2 4.1 40 208-258 21-73 (73)
35 KOG0978 E3 ubiquitin ligase in 98.1 5.7E-07 1.2E-11 90.5 0.5 65 189-266 629-693 (698)
36 COG5222 Uncharacterized conser 98.0 3.5E-06 7.6E-11 76.0 3.5 44 206-259 274-318 (427)
37 KOG0824 Predicted E3 ubiquitin 98.0 3.2E-06 6.9E-11 76.5 1.9 50 206-265 7-56 (324)
38 KOG4367 Predicted Zn-finger pr 97.9 1.1E-05 2.3E-10 76.3 4.7 35 203-237 1-35 (699)
39 KOG2879 Predicted E3 ubiquitin 97.9 1.3E-05 2.9E-10 71.6 4.6 49 205-262 238-287 (298)
40 KOG1002 Nucleotide excision re 97.9 2.3E-05 5E-10 75.8 6.2 54 205-264 535-588 (791)
41 COG5152 Uncharacterized conser 97.9 4.3E-06 9.2E-11 71.3 1.2 46 206-262 196-241 (259)
42 KOG0802 E3 ubiquitin ligase [P 97.8 5.8E-06 1.3E-10 83.1 1.4 48 205-263 290-342 (543)
43 PF11789 zf-Nse: Zinc-finger o 97.8 1.4E-05 3.1E-10 55.5 2.3 43 205-256 10-53 (57)
44 KOG1813 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 71.1 2.7 46 206-262 241-286 (313)
45 COG5243 HRD1 HRD ubiquitin lig 97.7 2.2E-05 4.9E-10 72.9 2.7 50 204-264 285-347 (491)
46 COG5540 RING-finger-containing 97.6 2.9E-05 6.2E-10 70.4 2.2 49 205-263 322-373 (374)
47 KOG0297 TNF receptor-associate 97.6 2.6E-05 5.7E-10 75.1 2.1 52 203-265 18-70 (391)
48 KOG4172 Predicted E3 ubiquitin 97.5 1.9E-05 4.1E-10 53.3 -0.3 47 206-262 7-54 (62)
49 KOG4628 Predicted E3 ubiquitin 97.5 6.3E-05 1.4E-09 70.4 2.4 48 207-264 230-280 (348)
50 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00024 5.1E-09 53.1 3.9 37 219-263 46-83 (85)
51 KOG1001 Helicase-like transcri 97.3 0.00082 1.8E-08 68.9 8.7 51 207-267 455-505 (674)
52 KOG1039 Predicted E3 ubiquitin 97.3 0.00016 3.4E-09 68.1 2.6 57 204-264 159-223 (344)
53 KOG4265 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 67.1 2.5 47 205-262 289-336 (349)
54 KOG0804 Cytoplasmic Zn-finger 97.2 0.00016 3.4E-09 68.9 1.8 48 202-262 171-222 (493)
55 KOG1645 RING-finger-containing 97.0 0.0023 5E-08 60.5 7.4 54 205-267 3-61 (463)
56 KOG1785 Tyrosine kinase negati 96.6 0.0006 1.3E-08 64.1 0.7 50 208-266 371-420 (563)
57 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0034 7.3E-08 57.3 5.0 68 204-283 111-182 (260)
58 KOG4692 Predicted E3 ubiquitin 96.5 0.0013 2.9E-08 60.9 2.2 49 204-263 420-468 (489)
59 KOG3039 Uncharacterized conser 96.5 0.0015 3.2E-08 57.9 1.9 53 205-268 220-276 (303)
60 KOG0828 Predicted E3 ubiquitin 96.4 0.0017 3.7E-08 62.6 1.9 50 203-262 568-634 (636)
61 KOG4275 Predicted E3 ubiquitin 96.3 0.00068 1.5E-08 61.3 -0.9 42 206-262 300-342 (350)
62 PF11793 FANCL_C: FANCL C-term 96.2 0.0019 4.1E-08 46.8 1.0 59 206-264 2-68 (70)
63 KOG1571 Predicted E3 ubiquitin 96.0 0.0027 5.9E-08 59.3 1.3 45 205-263 304-348 (355)
64 KOG3800 Predicted E3 ubiquitin 96.0 0.017 3.7E-07 52.5 6.3 48 208-265 2-54 (300)
65 KOG4185 Predicted E3 ubiquitin 96.0 0.011 2.3E-07 54.9 5.0 68 206-283 3-77 (296)
66 PF14447 Prok-RING_4: Prokaryo 95.9 0.0034 7.3E-08 42.8 1.1 48 205-265 6-53 (55)
67 PF14570 zf-RING_4: RING/Ubox 95.9 0.0077 1.7E-07 40.1 2.6 43 209-261 1-47 (48)
68 KOG0825 PHD Zn-finger protein 95.9 0.0017 3.7E-08 65.8 -0.8 49 205-264 122-173 (1134)
69 KOG0826 Predicted E3 ubiquitin 95.7 0.0093 2E-07 55.0 3.4 51 204-265 298-349 (357)
70 KOG1814 Predicted E3 ubiquitin 95.5 0.034 7.4E-07 52.9 6.5 54 205-261 183-239 (445)
71 PF07800 DUF1644: Protein of u 95.4 0.02 4.3E-07 47.7 3.9 21 205-225 1-21 (162)
72 KOG1734 Predicted RING-contain 95.3 0.0053 1.2E-07 55.1 0.4 52 205-265 223-284 (328)
73 KOG4739 Uncharacterized protei 95.3 0.037 8.1E-07 49.2 5.6 44 207-263 4-49 (233)
74 KOG3161 Predicted E3 ubiquitin 94.7 0.018 3.8E-07 57.5 2.0 35 203-237 8-46 (861)
75 COG5194 APC11 Component of SCF 94.6 0.035 7.6E-07 40.7 2.9 48 207-265 32-84 (88)
76 KOG3002 Zn finger protein [Gen 94.5 0.047 1E-06 50.7 4.4 46 203-262 45-91 (299)
77 KOG0827 Predicted E3 ubiquitin 94.5 0.023 4.9E-07 53.6 2.2 47 206-260 4-54 (465)
78 KOG2817 Predicted E3 ubiquitin 94.4 0.03 6.5E-07 53.1 2.8 55 203-265 331-388 (394)
79 COG5236 Uncharacterized conser 94.3 0.033 7.2E-07 51.8 2.9 49 203-260 58-106 (493)
80 PF05290 Baculo_IE-1: Baculovi 94.3 0.033 7.2E-07 44.9 2.5 52 206-265 80-135 (140)
81 smart00744 RINGv The RING-vari 94.3 0.062 1.3E-06 36.0 3.4 42 208-258 1-49 (49)
82 COG5175 MOT2 Transcriptional r 94.3 0.026 5.6E-07 52.3 2.0 51 204-265 13-67 (480)
83 KOG1812 Predicted E3 ubiquitin 94.2 0.057 1.2E-06 52.0 4.5 58 205-267 145-208 (384)
84 COG5219 Uncharacterized conser 94.1 0.022 4.7E-07 59.3 1.3 51 203-262 1466-1523(1525)
85 KOG4362 Transcriptional regula 93.3 0.018 3.8E-07 58.5 -0.9 55 203-265 18-72 (684)
86 KOG3039 Uncharacterized conser 93.2 0.26 5.5E-06 44.0 6.3 33 205-237 42-74 (303)
87 PHA03096 p28-like protein; Pro 93.1 0.055 1.2E-06 49.9 2.0 32 207-238 179-218 (284)
88 COG5220 TFB3 Cdk activating ki 92.8 0.053 1.2E-06 48.0 1.4 46 205-260 9-62 (314)
89 KOG1493 Anaphase-promoting com 91.6 0.11 2.4E-06 37.8 1.6 49 207-263 32-82 (84)
90 PF10367 Vps39_2: Vacuolar sor 90.6 0.1 2.2E-06 40.4 0.8 32 203-234 75-108 (109)
91 KOG1100 Predicted E3 ubiquitin 90.1 0.14 3.1E-06 45.0 1.3 40 209-263 161-201 (207)
92 KOG2932 E3 ubiquitin ligase in 90.0 0.12 2.7E-06 47.4 0.8 43 208-263 92-135 (389)
93 PF02891 zf-MIZ: MIZ/SP-RING z 89.4 0.46 1E-05 31.9 3.1 48 206-260 2-50 (50)
94 KOG1941 Acetylcholine receptor 89.2 0.17 3.6E-06 48.0 1.1 46 205-259 364-413 (518)
95 COG5109 Uncharacterized conser 89.1 0.31 6.7E-06 45.0 2.7 59 198-264 328-389 (396)
96 KOG2114 Vacuolar assembly/sort 88.8 0.71 1.5E-05 48.0 5.3 42 205-260 839-881 (933)
97 KOG3970 Predicted E3 ubiquitin 88.7 0.87 1.9E-05 40.1 5.1 56 206-264 50-107 (299)
98 KOG0298 DEAD box-containing he 87.1 0.13 2.9E-06 55.3 -1.0 48 202-260 1149-1197(1394)
99 KOG2930 SCF ubiquitin ligase, 84.1 0.68 1.5E-05 35.7 1.8 29 223-262 80-108 (114)
100 PF07191 zinc-ribbons_6: zinc- 83.9 0.083 1.8E-06 38.0 -3.0 42 206-263 1-42 (70)
101 PF03854 zf-P11: P-11 zinc fin 83.9 0.54 1.2E-05 31.0 1.0 35 218-263 12-47 (50)
102 KOG3579 Predicted E3 ubiquitin 83.0 0.72 1.6E-05 42.0 1.8 34 205-238 267-304 (352)
103 KOG3113 Uncharacterized conser 82.8 2.2 4.7E-05 38.4 4.6 51 205-268 110-164 (293)
104 PF10272 Tmpp129: Putative tra 82.6 0.94 2E-05 43.1 2.5 41 224-264 311-353 (358)
105 KOG1815 Predicted E3 ubiquitin 82.6 1.8 3.8E-05 42.7 4.5 34 205-238 69-103 (444)
106 KOG1940 Zn-finger protein [Gen 80.5 1.7 3.6E-05 39.9 3.2 43 206-259 158-204 (276)
107 PF05883 Baculo_RING: Baculovi 79.1 0.84 1.8E-05 37.1 0.8 32 206-237 26-66 (134)
108 COG3813 Uncharacterized protei 77.6 2 4.3E-05 31.0 2.2 30 224-266 27-56 (84)
109 KOG4445 Uncharacterized conser 76.2 0.95 2.1E-05 41.6 0.3 60 206-265 115-189 (368)
110 PF10571 UPF0547: Uncharacteri 73.3 1.8 4E-05 24.9 0.9 21 208-228 2-24 (26)
111 PF06906 DUF1272: Protein of u 72.6 3.3 7.2E-05 28.4 2.2 45 208-265 7-55 (57)
112 KOG1428 Inhibitor of type V ad 72.2 6.9 0.00015 43.6 5.4 60 202-265 3482-3547(3738)
113 PF14569 zf-UDP: Zinc-binding 72.1 4.8 0.0001 29.5 3.0 48 206-263 9-63 (80)
114 PF05605 zf-Di19: Drought indu 71.1 3.6 7.9E-05 27.8 2.2 40 205-260 1-40 (54)
115 PF08746 zf-RING-like: RING-li 70.9 6.3 0.00014 25.5 3.2 40 209-257 1-43 (43)
116 PF10497 zf-4CXXC_R1: Zinc-fin 69.1 5.6 0.00012 31.1 3.1 36 225-262 37-72 (105)
117 PF10235 Cript: Microtubule-as 68.0 3.6 7.9E-05 31.2 1.8 38 206-263 44-81 (90)
118 KOG1952 Transcription factor N 66.9 3.5 7.5E-05 43.1 2.0 53 204-260 189-245 (950)
119 PHA02825 LAP/PHD finger-like p 66.3 7.8 0.00017 32.5 3.6 49 205-263 7-60 (162)
120 KOG2068 MOT2 transcription fac 66.0 5 0.00011 37.5 2.7 48 206-264 249-300 (327)
121 KOG3899 Uncharacterized conser 65.4 4 8.8E-05 37.5 1.9 42 224-265 325-368 (381)
122 KOG3268 Predicted E3 ubiquitin 64.4 5.9 0.00013 33.8 2.5 58 206-264 165-230 (234)
123 KOG0825 PHD Zn-finger protein 63.8 5.7 0.00012 41.3 2.8 51 205-260 95-152 (1134)
124 PF15616 TerY-C: TerY-C metal 61.7 4.6 0.0001 32.8 1.4 48 200-264 71-118 (131)
125 COG5183 SSM4 Protein involved 59.1 11 0.00025 39.3 3.9 73 205-286 11-95 (1175)
126 PHA02862 5L protein; Provision 57.1 12 0.00027 30.9 3.1 49 207-265 3-56 (156)
127 PF04216 FdhE: Protein involve 57.0 2.3 5E-05 39.3 -1.2 44 206-260 172-220 (290)
128 PF06844 DUF1244: Protein of u 55.9 6.7 0.00014 27.8 1.2 12 227-238 11-22 (68)
129 TIGR01562 FdhE formate dehydro 55.9 3.3 7.2E-05 38.7 -0.4 44 206-260 184-233 (305)
130 KOG1812 Predicted E3 ubiquitin 52.0 7.1 0.00015 37.7 1.2 32 206-237 306-342 (384)
131 KOG2462 C2H2-type Zn-finger pr 51.0 8.5 0.00018 35.1 1.4 61 205-265 160-229 (279)
132 COG1592 Rubrerythrin [Energy p 51.0 10 0.00022 32.2 1.8 12 249-260 147-158 (166)
133 KOG2169 Zn-finger transcriptio 50.9 15 0.00032 38.0 3.3 69 203-282 303-372 (636)
134 COG0068 HypF Hydrogenase matur 50.4 16 0.00036 37.7 3.5 57 205-264 100-186 (750)
135 PRK06266 transcription initiat 50.3 30 0.00066 29.6 4.7 32 249-283 134-165 (178)
136 PLN02189 cellulose synthase 49.5 12 0.00026 40.4 2.5 47 206-262 34-87 (1040)
137 cd00729 rubredoxin_SM Rubredox 49.4 12 0.00027 22.8 1.6 10 251-260 18-27 (34)
138 PLN02436 cellulose synthase A 49.2 12 0.00027 40.5 2.5 47 206-262 36-89 (1094)
139 PRK00420 hypothetical protein; 48.2 63 0.0014 25.5 5.8 15 249-263 38-52 (112)
140 cd00350 rubredoxin_like Rubred 47.3 15 0.00032 22.1 1.7 11 250-260 16-26 (33)
141 PF01363 FYVE: FYVE zinc finge 46.2 5.7 0.00012 28.0 -0.4 32 205-236 8-43 (69)
142 KOG0314 Predicted E3 ubiquitin 45.8 7.4 0.00016 38.1 0.3 37 201-237 214-253 (448)
143 PRK03564 formate dehydrogenase 45.6 7.3 0.00016 36.4 0.2 44 205-259 186-234 (309)
144 KOG3799 Rab3 effector RIM1 and 45.5 5.3 0.00012 32.4 -0.6 26 203-233 62-88 (169)
145 smart00064 FYVE Protein presen 44.8 17 0.00037 25.4 2.0 31 206-236 10-44 (68)
146 KOG2034 Vacuolar sorting prote 44.4 12 0.00027 39.4 1.6 35 203-237 814-850 (911)
147 PF14353 CpXC: CpXC protein 43.6 21 0.00045 28.5 2.5 50 206-263 1-50 (128)
148 PF07975 C1_4: TFIIH C1-like d 43.1 27 0.00058 23.5 2.6 25 223-258 26-50 (51)
149 cd00065 FYVE FYVE domain; Zinc 42.7 14 0.00031 24.8 1.2 30 207-236 3-36 (57)
150 PLN02638 cellulose synthase A 41.7 19 0.00042 39.1 2.5 47 206-262 17-70 (1079)
151 PRK04023 DNA polymerase II lar 41.6 20 0.00043 38.7 2.6 48 205-265 625-677 (1121)
152 KOG4185 Predicted E3 ubiquitin 40.7 4.6 0.0001 37.2 -2.0 45 206-260 207-265 (296)
153 KOG2113 Predicted RNA binding 39.4 20 0.00043 33.4 1.9 45 203-260 340-385 (394)
154 KOG2231 Predicted E3 ubiquitin 38.6 23 0.00051 36.5 2.5 49 208-261 2-51 (669)
155 PF12906 RINGv: RING-variant d 38.5 17 0.00038 23.8 1.1 40 209-257 1-47 (47)
156 PF04423 Rad50_zn_hook: Rad50 37.8 38 0.00082 22.7 2.7 13 253-265 22-34 (54)
157 PLN02915 cellulose synthase A 36.1 26 0.00056 38.0 2.5 47 206-262 15-68 (1044)
158 KOG2979 Protein involved in DN 35.9 37 0.0008 30.8 3.0 46 206-260 176-222 (262)
159 PLN02400 cellulose synthase 34.8 23 0.0005 38.5 1.9 48 206-263 36-90 (1085)
160 PLN02195 cellulose synthase A 34.7 31 0.00067 37.2 2.7 46 207-262 7-59 (977)
161 PRK11595 DNA utilization prote 34.0 37 0.00081 30.1 2.8 9 208-216 7-15 (227)
162 TIGR00373 conserved hypothetic 33.3 54 0.0012 27.5 3.5 17 249-265 126-142 (158)
163 PRK14559 putative protein seri 32.9 32 0.0007 35.6 2.5 12 250-261 40-51 (645)
164 COG3492 Uncharacterized protei 32.8 23 0.0005 26.8 1.1 12 227-238 42-53 (104)
165 PF10186 Atg14: UV radiation r 32.8 2.4E+02 0.0053 25.4 8.2 22 208-237 1-22 (302)
166 KOG1729 FYVE finger containing 32.3 16 0.00034 33.9 0.2 54 204-261 166-224 (288)
167 COG4647 AcxC Acetone carboxyla 32.1 21 0.00045 28.9 0.8 21 211-231 62-82 (165)
168 KOG4718 Non-SMC (structural ma 31.2 26 0.00056 30.9 1.2 42 207-259 182-224 (235)
169 PF05502 Dynactin_p62: Dynacti 30.9 22 0.00047 35.5 0.9 13 205-217 25-37 (483)
170 PF04710 Pellino: Pellino; In 30.1 17 0.00037 34.9 0.0 51 207-265 278-342 (416)
171 KOG2042 Ubiquitin fusion degra 29.8 91 0.002 33.6 5.2 70 203-287 867-937 (943)
172 smart00647 IBR In Between Ring 29.0 13 0.00028 25.3 -0.8 14 223-236 45-58 (64)
173 PF09538 FYDLN_acid: Protein o 28.9 38 0.00082 26.6 1.7 14 204-217 7-20 (108)
174 PF13719 zinc_ribbon_5: zinc-r 28.8 25 0.00055 21.8 0.6 13 207-219 3-15 (37)
175 PF15389 DUF4612: Domain of un 28.7 32 0.00068 27.3 1.3 17 65-81 88-104 (115)
176 KOG0824 Predicted E3 ubiquitin 28.5 18 0.00039 33.5 -0.2 48 203-261 102-150 (324)
177 PF09297 zf-NADH-PPase: NADH p 27.9 11 0.00024 22.5 -1.1 28 226-260 3-30 (32)
178 smart00154 ZnF_AN1 AN1-like Zi 27.7 40 0.00087 21.2 1.4 23 209-231 1-25 (39)
179 PRK11088 rrmA 23S rRNA methylt 26.6 37 0.0008 30.8 1.5 22 207-228 3-27 (272)
180 KOG3476 Microtubule-associated 26.4 7.7 0.00017 29.0 -2.4 39 206-264 54-92 (100)
181 KOG0370 Multifunctional pyrimi 26.4 2.5E+02 0.0054 30.7 7.4 74 71-155 807-887 (1435)
182 KOG3053 Uncharacterized conser 25.8 65 0.0014 29.3 2.8 58 202-262 16-82 (293)
183 smart00734 ZnF_Rad18 Rad18-lik 25.6 56 0.0012 18.6 1.6 11 252-262 2-12 (26)
184 PF13240 zinc_ribbon_2: zinc-r 25.6 14 0.0003 20.5 -0.9 10 251-260 13-22 (23)
185 TIGR00143 hypF [NiFe] hydrogen 25.5 38 0.00082 35.5 1.6 56 205-263 67-152 (711)
186 KOG1356 Putative transcription 25.2 24 0.00052 37.2 0.0 33 205-237 228-262 (889)
187 KOG0289 mRNA splicing factor [ 24.7 59 0.0013 31.8 2.5 47 207-264 1-48 (506)
188 COG1675 TFA1 Transcription ini 24.6 1.4E+02 0.0029 25.7 4.5 17 249-265 130-146 (176)
189 KOG3842 Adaptor protein Pellin 24.1 48 0.001 31.0 1.8 47 207-263 291-353 (429)
190 PF10146 zf-C4H2: Zinc finger- 23.7 55 0.0012 29.3 2.0 28 67-94 29-56 (230)
191 TIGR02098 MJ0042_CXXC MJ0042 f 23.6 31 0.00068 21.1 0.3 11 251-261 25-35 (38)
192 COG5627 MMS21 DNA repair prote 23.4 1.1E+02 0.0025 27.4 3.8 52 206-266 189-243 (275)
193 KOG3896 Dynactin, subunit p62 23.4 37 0.0008 32.0 0.9 11 207-217 46-56 (449)
194 KOG4642 Chaperone-dependent E3 23.3 89 0.0019 28.4 3.2 71 202-286 207-277 (284)
195 PF14446 Prok-RING_1: Prokaryo 23.1 1E+02 0.0022 21.1 2.7 30 205-234 4-37 (54)
196 KOG0309 Conserved WD40 repeat- 22.1 51 0.0011 34.5 1.6 33 205-237 1027-1061(1081)
197 KOG2807 RNA polymerase II tran 21.3 51 0.0011 31.0 1.3 40 208-258 332-374 (378)
198 PF02318 FYVE_2: FYVE-type zin 20.9 43 0.00093 26.5 0.7 44 206-259 54-102 (118)
199 KOG4451 Uncharacterized conser 20.6 66 0.0014 28.7 1.8 27 228-265 251-277 (286)
200 PRK01343 zinc-binding protein; 20.4 80 0.0017 21.8 1.8 14 249-262 7-20 (57)
201 KOG1815 Predicted E3 ubiquitin 20.0 48 0.001 32.6 1.0 48 218-265 178-240 (444)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6e-23 Score=185.67 Aligned_cols=123 Identities=23% Similarity=0.211 Sum_probs=89.1
Q ss_pred CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS 80 (313)
Q Consensus 1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~ 80 (313)
|||||.|++.+.| +|+++||+||.|||+||+.......... ++ ..+.+|+..|++||+
T Consensus 1 MkFGk~L~~~~l~-ew~~~yinYk~LKK~lK~~~~~~~~~~~-~~--------------------~~e~dFv~~Ld~ELE 58 (310)
T KOG1161|consen 1 MKFGKYLKEELLP-EWKDKYINYKELKKLLKQYSIQTADSSP-DS--------------------RDESDFVRLLDAELE 58 (310)
T ss_pred CchhHHHHHhhhh-hHhhhhcCHHHHHHHHHHhccccccCCc-cc--------------------chHHHHHHHHHHHHH
Confidence 9999999988888 6899999999999999997543221100 00 037789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh------h-----hHHHHHHHHccccCCCccHHHHHHHhHHHHHHHHhhHHHHHHHHhhcC
Q 044708 81 AVVRYFNKRAKKLINLHQAA------G-----LKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYD 149 (313)
Q Consensus 81 ki~~ff~~r~~~l~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~y~~lN~tg~rKilkk~~ 149 (313)
||++||.++.++++.+.... + ...-+..++.. .. ++.++...|.+|++||+|||+|||||||
T Consensus 59 Kv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~------l~-~~~~em~~L~~fs~LN~tGf~KILKK~D 131 (310)
T KOG1161|consen 59 KVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELREE------LV-DFHGEMVLLENFSRLNYTGFAKILKKHD 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHH------HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 99999999888875443210 0 00011112221 12 5566778999999999999999999999
Q ss_pred Chh
Q 044708 150 KSP 152 (313)
Q Consensus 150 k~~ 152 (313)
|+.
T Consensus 132 Krt 134 (310)
T KOG1161|consen 132 KRT 134 (310)
T ss_pred ccc
Confidence 943
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.87 E-value=1.2e-22 Score=184.75 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCC----------------------CCCCCCCc----hh
Q 044708 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPE----------------------SNSNADGV----AQ 54 (313)
Q Consensus 1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~----------------------~~~~~~~~----~~ 54 (313)
|||||+|+..+.| +|+.+||+||.|||+||++........... ......+. +.
T Consensus 1 MKFgk~L~~~~vp-EW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T PF03105_consen 1 MKFGKQLQENAVP-EWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTSPS 79 (275)
T ss_pred CCchHHHHHhcCH-HHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccccc
Confidence 9999999999999 679999999999999999977644321000 00000000 00
Q ss_pred hhhhhccCCCCcchhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044708 55 IKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLIN 95 (313)
Q Consensus 55 ~~~~~~~~~~~~~~~~Ff~~l~~El~ki~~ff~~r~~~l~~ 95 (313)
.............+..||..|+.||+||+.||.++..++..
T Consensus 80 ~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~ 120 (275)
T PF03105_consen 80 SSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRE 120 (275)
T ss_pred ccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000001223368899999999999999999988877643
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-20 Score=184.80 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=92.5
Q ss_pred CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS 80 (313)
Q Consensus 1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~ 80 (313)
|||||.|.++++| +|+.+||||+.||++||++....+...+.+. -...+ +....+..||..||.|+.
T Consensus 1 MKFgk~~~~q~~p-EW~~ay~dY~~lK~~l~~i~~~~~~~~~t~~---------~~~~~---~~~~~~~~Ff~~ld~el~ 67 (617)
T KOG1162|consen 1 MKFGKELESQLVP-EWRQAYIDYKYLKKLLKEIIENKPSSEETTF---------LMVSE---EGGEFEEVFFRRLDEELN 67 (617)
T ss_pred CcchHHHHHhcCH-HHHHHhhhHHHHHHHHHHHHhcCCCcCccHH---------HHHHH---hhhhhHHHHHHHHHHHHH
Confidence 9999999999999 5799999999999999999775543321110 01111 344578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHcc----ccC---------C--C----------ccHHHHHHHhHHHHHHH
Q 044708 81 AVVRYFNKRAKKLINLHQAAG-LKKYFLWIKGK----MQG---------Q--G----------THVSSLIEQGKELVVYA 134 (313)
Q Consensus 81 ki~~ff~~r~~~l~~~~~~~~-~~~~~~~~~~~----~~~---------~--~----------~~~~~l~~~~~~L~~y~ 134 (313)
|||.||.+++++..+++..-. ..+.+..+|.. +.. . + .-.+++-...+.|+||+
T Consensus 68 Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~ 147 (617)
T KOG1162|consen 68 KVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQ 147 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888765543211 00111111110 000 0 0 00002223345899999
Q ss_pred HhhHHHHHHHHhhcCC
Q 044708 135 LINAIMIRKILKKYDK 150 (313)
Q Consensus 135 ~lN~tg~rKilkk~~k 150 (313)
.||.||||||+|||||
T Consensus 148 ~lN~~~f~KI~KKyDK 163 (617)
T KOG1162|consen 148 FLNVTAFRKILKKYDK 163 (617)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999998
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.3e-13 Score=128.14 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=84.3
Q ss_pred CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS 80 (313)
Q Consensus 1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~ 80 (313)
|+||++|.+-+-+ +|+..||||..||+.||+-.. .+. .. +..+.+|..+|+.||+
T Consensus 1 M~Fg~~L~~~ly~-p~k~~YinYe~LK~~lK~~~~--------~~~---------w~-------e~dEsdFVe~Ld~eLe 55 (509)
T COG5036 1 MRFGKKLKNNLYP-PYKYSYINYENLKKLLKESEE--------EGS---------WS-------ESDESDFVEELDKELE 55 (509)
T ss_pred CchhHHHHhccCc-ccccccCCHHHHHHHHhhccc--------cCC---------Cc-------ccchHHHHHHHHHHHH
Confidence 9999999999888 689999999999999999111 000 00 1146789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHccccCCCccHHHHHH---HhHHHHHHHHhhHHHHHHHHhhcCChhh
Q 044708 81 AVVRYFNKRAKKLINLHQAA--GLKKYFLWIKGKMQGQGTHVSSLIE---QGKELVVYALINAIMIRKILKKYDKSPW 153 (313)
Q Consensus 81 ki~~ff~~r~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~y~~lN~tg~rKilkk~~k~~~ 153 (313)
||-+|=.++..+++++-... .....++.+-. +.....|.. +...|.+|..||+|||.||+|||||+|.
T Consensus 56 KVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds-----~~~~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~ 128 (509)
T COG5036 56 KVYGFQLSKYSEVMERLRTLEEQTDEAIQELDS-----DNFPKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTG 128 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHhhcccC-----CcchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCC
Confidence 99999877777765442211 11111111110 011102222 3348999999999999999999999664
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.44 E-value=8.2e-14 Score=90.99 Aligned_cols=42 Identities=40% Similarity=0.959 Sum_probs=30.8
Q ss_pred cccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
||||+++|.+||+++|||+||..||.+++. ........||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~-------~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWK-------EPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHC-------CSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHH-------ccCCcCCCCcCC
Confidence 899999999999999999999999999982 111233789988
No 6
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=1.7e-13 Score=130.00 Aligned_cols=91 Identities=23% Similarity=0.411 Sum_probs=76.9
Q ss_pred ccCCCcccchhcccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 185 TFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+++++..++.+.+.....++..+.|+||.+++.+|++++|||+||..||..++ .....||.|+..+...
T Consensus 5 di~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l-----------~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 5 DITDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCL-----------SNQPKCPLCRAEDQES 73 (397)
T ss_pred cCCCchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHH-----------hCCCCCCCCCCccccc
Confidence 66777788888888888899999999999999999999999999999999987 2345899999998765
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhH
Q 044708 265 LFLQIYLINGCYINSCREYWEKRLQI 290 (313)
Q Consensus 265 ~~~~~~~~n~~l~~l~~~~~~~~~~~ 290 (313)
.. ..|..|.++++.|...|...
T Consensus 74 ~L----r~N~~L~~iVe~~~~~R~~L 95 (397)
T TIGR00599 74 KL----RSNWLVSEIVESFKNLRPSL 95 (397)
T ss_pred cC----ccchHHHHHHHHHHHhhHHH
Confidence 44 37899999999997766554
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.29 E-value=3e-12 Score=91.03 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=50.5
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
++.||||++++.+||.++|||+||+.||..|+. ....||.|+.++...+.. .|..+++.++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~-----------~~~~cP~~~~~~~~~~l~----~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL-----------SHGTDPVTGQPLTHEDLI----PNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH-----------HCCCCCCCcCCCChhhce----eCHHHHHHHH
Confidence 468999999999999999999999999999982 256899999998776655 5566666554
No 8
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.26 E-value=3.6e-12 Score=115.73 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=67.2
Q ss_pred ccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHH
Q 044708 197 LFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCY 276 (313)
Q Consensus 197 ~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l 276 (313)
++....++..++|.||.++|..|+.+||+|+||.-||..++ ...+.||.|+.+++...+. -|+++
T Consensus 14 ipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L-----------~~~p~CP~C~~~~~Es~Lr----~n~il 78 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFL-----------SYKPQCPTCCVTVTESDLR----NNRIL 78 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHh-----------ccCCCCCceecccchhhhh----hhhHH
Confidence 33444577889999999999999999999999999999998 7788999999998877654 88999
Q ss_pred HHHHHHHHHHHHhH
Q 044708 277 INSCREYWEKRLQI 290 (313)
Q Consensus 277 ~~l~~~~~~~~~~~ 290 (313)
..|+..|.-.|...
T Consensus 79 ~Eiv~S~~~~R~~L 92 (442)
T KOG0287|consen 79 DEIVKSLNFARNHL 92 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987766543
No 9
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-11 Score=110.87 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCC---CCCCCchhhhhhh---------ccCCCCcch
Q 044708 1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESN---SNADGVAQIKITS---------CHNRCPVCD 68 (313)
Q Consensus 1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~ 68 (313)
||||+.|..+..| +|+.+||+||.|||+|+.+...+.....+.++ +.+++.+++.... ..+..+...
T Consensus 1 MKF~~~L~~naVP-EWss~Y~dYk~lKKlI~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~dr~~~~l~~~~s~~~~~~v 79 (296)
T COG5408 1 MKFGHSLQFNAVP-EWSSKYIDYKQLKKLIYSLQKDQLSSYHGVSDNDETRDEAGEPSNWRDRFNHALKKELSPLQANYV 79 (296)
T ss_pred Ccchhhhhhccch-hhHHhhhhHHHHHHHHHHHhcchhhhhccCCccccccccccCCCChhhhhcchhhhhhhhHHHHHH
Confidence 9999999999999 67999999999999999998765543322211 2222222211100 011223346
Q ss_pred hchhHH-HHHHHHHHHHHHH
Q 044708 69 GAFFPT-LVNDMSAVVRYFN 87 (313)
Q Consensus 69 ~~Ff~~-l~~El~ki~~ff~ 87 (313)
.+||+. +..|+.|++.||.
T Consensus 80 ~~f~e~~i~~e~~k~~e~~~ 99 (296)
T COG5408 80 AKFFENYISEEAIKLDEFYS 99 (296)
T ss_pred HHHHHHhhhHHHHHHHhhhc
Confidence 788888 9999999999974
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.22 E-value=7.5e-12 Score=107.03 Aligned_cols=64 Identities=27% Similarity=0.556 Sum_probs=48.1
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhcc-----ccCCCCCCCCCCCcCCccchhh
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDG-----LKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~-----~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
..+++.|+||++.+.+|++++|||.||+.||..|+....... .........||+||.++.....
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 346789999999999999999999999999999974221100 0112346799999999876553
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.22 E-value=1.9e-11 Score=89.76 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=55.2
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHHH
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREY 283 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~ 283 (313)
.+.+.|||+.+++.+||.++|||+|++.||..|+. .....||.|+.++...+.+ .|..+++.++.|
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~----------~~~~~~P~t~~~l~~~~l~----pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLE----------QNGGTDPFTRQPLSESDLI----PNRALKSAIEEW 67 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHC----------TTSSB-TTT-SB-SGGGSE----E-HHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHH----------cCCCCCCCCCCcCCcccce----ECHHHHHHHHHH
Confidence 36899999999999999999999999999999982 3588999999999887766 889999999988
Q ss_pred HHH
Q 044708 284 WEK 286 (313)
Q Consensus 284 ~~~ 286 (313)
..+
T Consensus 68 ~~~ 70 (73)
T PF04564_consen 68 CAE 70 (73)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 12
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.08 E-value=2.5e-11 Score=84.76 Aligned_cols=61 Identities=28% Similarity=0.651 Sum_probs=33.5
Q ss_pred CCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
+++.+.|++|.+++.+||.+ .|.|+||+.|+...+ +..||+|+.+....+.. .|+.+.+++
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~-------------~~~CPvC~~Paw~qD~~----~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI-------------GSECPVCHTPAWIQDIQ----INRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGT-------------TTB-SSS--B-S-SS--------HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc-------------CCCCCCcCChHHHHHHH----hhhhhhccC
Confidence 45788999999999999975 799999999996654 23599999998877755 777777664
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.06 E-value=7.4e-11 Score=75.83 Aligned_cols=38 Identities=45% Similarity=1.138 Sum_probs=31.6
Q ss_pred cccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
|+||++.+.+| +.++|||+||..|+.+++. . ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~----------~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE----------K-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH----------C-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH----------C-cCCCcCC
Confidence 89999999999 5689999999999999972 2 5789987
No 14
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.05 E-value=1.7e-10 Score=102.88 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=58.6
Q ss_pred cccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHH
Q 044708 196 ELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGC 275 (313)
Q Consensus 196 ~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~ 275 (313)
.++....+...+.|-||.+.+..|+.++|||+||.-||.+++ +..+.||+||.+...... +-+..
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-----------~~qp~CP~Cr~~~~esrl----r~~s~ 79 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHL-----------GTQPFCPVCREDPCESRL----RGSSG 79 (391)
T ss_pred cCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHh-----------cCCCCCccccccHHhhhc----ccchh
Confidence 334444567789999999999999999999999999999998 778899999998654432 24555
Q ss_pred HHHHHHHHHHH
Q 044708 276 YINSCREYWEK 286 (313)
Q Consensus 276 l~~l~~~~~~~ 286 (313)
+..+.+.|...
T Consensus 80 ~~ei~es~~~~ 90 (391)
T COG5432 80 SREINESHARN 90 (391)
T ss_pred HHHHHHhhhhc
Confidence 66666665433
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9e-11 Score=105.11 Aligned_cols=52 Identities=31% Similarity=0.724 Sum_probs=45.9
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
+....|.+|++...+|..+||||.||+.||.+|. .....||.||..++..+.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~-----------~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWC-----------SEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHH-----------ccccCCCcccccCCCcce
Confidence 4568899999999999999999999999999997 455569999999887764
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-10 Score=101.71 Aligned_cols=56 Identities=25% Similarity=0.623 Sum_probs=47.2
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
...+.|.||++...+||.+.|||.||+.||.+|+.. ......||+|+..++....+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~--------~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT--------RPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhh--------cCCCeeCCccccccccceEE
Confidence 357899999999999999999999999999999732 35677899999988766543
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.00 E-value=2e-10 Score=77.93 Aligned_cols=47 Identities=40% Similarity=0.937 Sum_probs=40.1
Q ss_pred ccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 205 IELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
++..|+||++...+++.+||||. ||..|+.+++ .....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLL-----------KRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH-----------HTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhc-----------ccCCCCCcCChhhc
Confidence 35789999999999999999999 9999999997 46789999999875
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.96 E-value=3.2e-10 Score=100.92 Aligned_cols=49 Identities=27% Similarity=0.779 Sum_probs=39.9
Q ss_pred CccCccccccccccCc--------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 204 DIELTCPVCLETVFDP--------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P--------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.++..|+||++.+.++ +.++|||.||..||.+|. .....||+||.++..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl-----------~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK-----------KEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH-----------hcCCCCCCCCCEeeE
Confidence 3567899999987653 456899999999999997 446689999998763
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6.8e-10 Score=92.82 Aligned_cols=52 Identities=38% Similarity=0.932 Sum_probs=43.5
Q ss_pred CccCccccccccccC--ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 204 DIELTCPVCLETVFD--PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~--Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
+..+.||||++-+.. |+.+.|||.||+.||...+ .....||+|++.+..+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al-----------k~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL-----------KNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHH-----------HhCCCCCCcccccchhhh
Confidence 456899999998875 5668999999999999987 667899999998776553
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.88 E-value=1e-09 Score=71.18 Aligned_cols=40 Identities=48% Similarity=1.055 Sum_probs=35.2
Q ss_pred cccccccccCce-EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVFDPV-SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~~Pv-~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
|+||++.+.+|+ +++|||+||..|+.+++.. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---------~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---------SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---------TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh---------cCCccCCcC
Confidence 899999999999 7899999999999999831 456779987
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.88 E-value=8.1e-10 Score=72.19 Aligned_cols=39 Identities=41% Similarity=0.952 Sum_probs=22.7
Q ss_pred cccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCC
Q 044708 209 CPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCP 255 (313)
Q Consensus 209 C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP 255 (313)
||||.+ +.+ |+.|+|||+||..|+.++++. .....+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~-------~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK-------SDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH--------S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc-------CCCCeeeCc
Confidence 899999 888 999999999999999998731 113567787
No 22
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.87 E-value=5.8e-10 Score=73.56 Aligned_cols=40 Identities=38% Similarity=0.947 Sum_probs=32.4
Q ss_pred cccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708 208 TCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258 (313)
Q Consensus 208 ~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr 258 (313)
.|+||++.+. .++.++|||.||..||.+|+. ....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~-----------~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK-----------RNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH-----------HSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH-----------hCCcCCccC
Confidence 5999999884 456689999999999999982 245999997
No 23
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.77 E-value=3.6e-09 Score=96.56 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=67.1
Q ss_pred cCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.+...++|.+|..+|.|+.+++ |.|+||++||..++ .....||.|...+....+......+..++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l-----------~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYL-----------EESKYCPTCDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHH-----------HHhccCCccceeccCccccccCCcchHHHHHH
Confidence 4567889999999999999875 99999999999998 44789999998877665444556677777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 044708 281 REYWEKRLQIERVERVKQAKE 301 (313)
Q Consensus 281 ~~~~~~~~~~e~~e~~~~~ke 301 (313)
-.+.......|...+-..+++
T Consensus 80 yKLVPgl~erE~k~~rdFy~~ 100 (331)
T KOG2660|consen 80 YKLVPGLQEREMKRRRDFYKS 100 (331)
T ss_pred HHHcchHHHHHHHHHHHHHHh
Confidence 777555555554444444443
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=98.76 E-value=5.8e-09 Score=90.44 Aligned_cols=57 Identities=26% Similarity=0.619 Sum_probs=42.1
Q ss_pred cCCccCccccccccccC---------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 202 RLDIELTCPVCLETVFD---------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~---------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
...++..|+||++...+ ++..+|+|+||..||..|.+. ....+....||.||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~-----r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT-----RRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh-----ccccCcCCcCCCCcceeee
Confidence 44578999999998654 244589999999999999731 1112345789999998664
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.7e-09 Score=95.46 Aligned_cols=68 Identities=34% Similarity=0.615 Sum_probs=54.7
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
.+.+.+.||||++.+.+|++++|||+||..|+..++. ....||.||. ... ....|..+.++++
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~-~~~-----~~~~n~~l~~~~~ 71 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP-PSR-----NLRPNVLLANLVE 71 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC-chh-----ccCccHHHHHHHH
Confidence 3568899999999999998899999999999998871 5689999995 222 2237888888888
Q ss_pred HHHHH
Q 044708 282 EYWEK 286 (313)
Q Consensus 282 ~~~~~ 286 (313)
.+...
T Consensus 72 ~~~~~ 76 (386)
T KOG2177|consen 72 RLRQL 76 (386)
T ss_pred HHHhc
Confidence 87544
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.71 E-value=1.1e-08 Score=66.82 Aligned_cols=43 Identities=42% Similarity=1.088 Sum_probs=36.3
Q ss_pred ccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 208 TCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.|+||.+.+.+|+.++ |||.||..|+..|+. .....||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLK----------SGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHH----------hCcCCCCCCCCc
Confidence 4999999998888775 999999999999872 246789999875
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.70 E-value=1.3e-08 Score=67.08 Aligned_cols=41 Identities=37% Similarity=0.953 Sum_probs=34.0
Q ss_pred ccccccccc---cCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 208 TCPVCLETV---FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 208 ~C~IC~~~~---~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
.|+||.+.+ ..|+.++|||+||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence 489999988 356778999999999997663 56789999985
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.4e-08 Score=95.98 Aligned_cols=54 Identities=33% Similarity=0.740 Sum_probs=45.9
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+..||||++...-|+.+.|||.||..||..+|... ...+...||+|+..+..++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s------~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS------AIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh------cccCCccCCchhhhccccc
Confidence 78899999999999999999999999999998422 2356679999999988755
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.59 E-value=4.2e-08 Score=61.72 Aligned_cols=39 Identities=44% Similarity=1.146 Sum_probs=33.9
Q ss_pred cccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
|+||++...+++.++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK----------SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH----------hCcCCCCCC
Confidence 899999999999999999999999999872 245679987
No 30
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.9e-09 Score=95.33 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=56.6
Q ss_pred cccccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh-hhhhhhhhHH
Q 044708 198 FDSIRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML-FLQIYLINGC 275 (313)
Q Consensus 198 ~~~~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~n~~ 275 (313)
.+...+..++.||||+++++..++++ |+|.||..||...+ ..+...||.||+.+.... +........+
T Consensus 35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~----------r~gn~ecptcRk~l~SkrsLr~Dp~fdaL 104 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKAL----------RSGNNECPTCRKKLVSKRSLRIDPNFDAL 104 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHH----------HhcCCCCchHHhhccccccCCCCccHHHH
Confidence 34456778999999999999999885 99999999998776 267889999999977554 3323345555
Q ss_pred HHHHHHH
Q 044708 276 YINSCRE 282 (313)
Q Consensus 276 l~~l~~~ 282 (313)
+..+.+.
T Consensus 105 is~i~~s 111 (381)
T KOG0311|consen 105 ISKIYPS 111 (381)
T ss_pred HHHHhcc
Confidence 5555554
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.3e-08 Score=88.74 Aligned_cols=53 Identities=30% Similarity=0.589 Sum_probs=43.7
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..++.|+||++....|..++|||.||..||...|- ....-.||.||+.+....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t---------~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWT---------KKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHH---------hhccccCchhhhhccchh
Confidence 46899999999999999999999999999987330 133446999999887665
No 32
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.8e-08 Score=91.39 Aligned_cols=76 Identities=28% Similarity=0.558 Sum_probs=58.4
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh-hhhhhhhHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF-LQIYLINGCYINSCR 281 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~-~~~~~~n~~l~~l~~ 281 (313)
+..++.|.||...+..||++||||+||..||.+.. .....||.||.++..... .+...+|+....++.
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~l-----------d~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~ 149 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSL-----------DQETECPLCRDELVELPALEQALSLNRLLCKLIT 149 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHh-----------ccCCCCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999998875 567889999999885432 222224666667777
Q ss_pred HHHHHHHh
Q 044708 282 EYWEKRLQ 289 (313)
Q Consensus 282 ~~~~~~~~ 289 (313)
.+......
T Consensus 150 ~F~~~~~~ 157 (398)
T KOG4159|consen 150 KFLEGSSS 157 (398)
T ss_pred Hhhhhhhc
Confidence 66555444
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=4e-07 Score=83.63 Aligned_cols=51 Identities=27% Similarity=0.543 Sum_probs=38.9
Q ss_pred ccCcccccccc-ccCce---Ec-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLET-VFDPV---SL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~-~~~Pv---~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
++..||+|... +..|- .+ +|||.||..|+...|+ .+...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~----------~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc----------CCCCCCCCCCCccchhh
Confidence 45689999974 44553 22 6999999999999872 45568999999877655
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.19 E-value=1.9e-06 Score=63.19 Aligned_cols=40 Identities=38% Similarity=0.897 Sum_probs=31.5
Q ss_pred ccccccccccCc------------eE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708 208 TCPVCLETVFDP------------VS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258 (313)
Q Consensus 208 ~C~IC~~~~~~P------------v~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr 258 (313)
.|+||++.+.+| +. .+|||.|...||.+|+ .....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL-----------KQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH-----------TTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH-----------hcCCcCCCCC
Confidence 499999998432 33 4799999999999998 4555999997
No 35
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.7e-07 Score=90.48 Aligned_cols=65 Identities=29% Similarity=0.483 Sum_probs=51.5
Q ss_pred CcccchhcccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
+++.+...+. ....-+.||+|..-+.+.|.+.|||.||..|+.+.+. .....||.|..++...+.
T Consensus 629 ~d~~L~EElk---~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e----------tRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 629 ADEVLAEELK---EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE----------TRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ccHHHHHHHH---HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH----------HhcCCCCCCCCCCCcccc
Confidence 3444444333 3457899999999999999999999999999988873 456789999999887764
No 36
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.03 E-value=3.5e-06 Score=75.97 Aligned_cols=44 Identities=36% Similarity=0.894 Sum_probs=38.5
Q ss_pred cCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 206 ELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
.|.||.|..++.+|+.++ |+|+||..||...+ ....+.||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al----------~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTAL----------LDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhh----------hhccccCCCccc
Confidence 389999999999999996 99999999998776 256789999955
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.2e-06 Score=76.50 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=42.3
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.-.|+||+.....||.++|+|.||.-||.... ......||+||.++...-
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy----------~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSY----------KNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchh----------hcCCCCCceecCCCCcch
Confidence 45799999999999999999999999997664 245567999999987654
No 38
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.92 E-value=1.1e-05 Score=76.27 Aligned_cols=35 Identities=40% Similarity=0.871 Sum_probs=31.7
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+++++.||||..++.+|+.+||+|+.|+.|.....
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 36899999999999999999999999999986554
No 39
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.3e-05 Score=71.61 Aligned_cols=49 Identities=35% Similarity=0.751 Sum_probs=41.0
Q ss_pred ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.+.+||+|.+....|.+. +|||.||..|+..... ....+.||.|..++.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~---------~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRL---------WDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhc---------chhhcccCccCCCCc
Confidence 578899999999999987 5999999999976641 145689999998875
No 40
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.88 E-value=2.3e-05 Score=75.75 Aligned_cols=54 Identities=20% Similarity=0.583 Sum_probs=43.7
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
....|.+|.+.-.+++...|.|.||+.|+.++. .+.. .+....||+|...++..
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv-----~~f~-~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYV-----ESFM-ENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHH-----Hhhh-cccCCCCcccccccccc
Confidence 467899999999999999999999999998886 2211 24458999998887644
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.88 E-value=4.3e-06 Score=71.26 Aligned_cols=46 Identities=28% Similarity=0.770 Sum_probs=39.8
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
-+.|.||...+..||.+.|||.||..|..+-+ .....|-+|.+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y-----------~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKY-----------QKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHh-----------ccCCcceecchhhc
Confidence 46899999999999999999999999987665 56788999987643
No 42
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.8e-06 Score=83.07 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=41.5
Q ss_pred ccCccccccccccC-----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFD-----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.+..|+||.+.+.. |..++|||.|+..|+..|+ .....||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~-----------er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWF-----------ERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHH-----------HHhCcCCcchhhhhc
Confidence 47899999999998 7889999999999999998 446789999995443
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.78 E-value=1.4e-05 Score=55.48 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=30.2
Q ss_pred ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPL 256 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~ 256 (313)
..+.|||.+..+.+||.. .|||+|.+..|..+++ ......||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~---------~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQ---------RNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT---------TTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHH---------hcCCCCCCC
Confidence 578999999999999985 7999999999998861 256788998
No 44
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.1e-05 Score=71.11 Aligned_cols=46 Identities=33% Similarity=0.830 Sum_probs=39.3
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
-+-|-||...+.+||.+.|||.||..|....+ .....|++|.+.+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~-----------qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPY-----------QKGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccc-----------ccCCcceecccccc
Confidence 35699999999999999999999999986654 55689999988754
No 45
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.2e-05 Score=72.87 Aligned_cols=50 Identities=32% Similarity=0.851 Sum_probs=40.8
Q ss_pred CccCccccccccc-cC------------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 204 DIELTCPVCLETV-FD------------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 204 ~~~l~C~IC~~~~-~~------------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
..+-.|.||++-+ .. |..+||||.+-..|+..|. .....||.||.++..+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~-----------ERqQTCPICr~p~ifd 347 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL-----------ERQQTCPICRRPVIFD 347 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH-----------HhccCCCcccCccccc
Confidence 3678999999874 32 3679999999999999998 5567899999996543
No 46
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.9e-05 Score=70.39 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=40.3
Q ss_pred ccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
....|.||+..+.. -+.+||.|.|-..|+..|+ ......||+||.+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~----------~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL----------LGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHH----------hhhcccCCccCCCCCC
Confidence 45789999987752 3458999999999999998 2567899999998763
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.61 E-value=2.6e-05 Score=75.12 Aligned_cols=52 Identities=40% Similarity=0.890 Sum_probs=44.9
Q ss_pred CCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 203 LDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+++++.|++|..++.+|+.+ .|||.||..|+..|. .....||.|+.......
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~-----------~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESL-----------SNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhh-----------ccCcCCcccccccchhh
Confidence 67889999999999999995 999999999998886 34789999988876554
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.9e-05 Score=53.27 Aligned_cols=47 Identities=32% Similarity=0.771 Sum_probs=38.4
Q ss_pred cCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
+-.|.||.+-..+.|...|||. .|..|-.+.+. .....||+||.++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~----------~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKK----------ALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHH----------ccCCcCcchhhHHH
Confidence 3579999998888888899995 79999877762 46778999999864
No 49
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=6.3e-05 Score=70.43 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=38.4
Q ss_pred CccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 207 LTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 207 l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+|.||+|.+..- +.|||+|.|=..||..|+ ......||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL----------~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWL----------TQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhH----------hhcCccCCCCCCcCCCC
Confidence 4899999988743 357999999999999998 23456799999876543
No 50
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.35 E-value=0.00024 Score=53.07 Aligned_cols=37 Identities=30% Similarity=0.674 Sum_probs=28.2
Q ss_pred ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 219 PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 219 Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
|+.+ .|+|.|-..||.+|++. ++....||.||++...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~--------~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLST--------QSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeccCccHHHHHHHHHHHcc--------ccCCCCCCCcCCeeee
Confidence 5544 69999999999999831 1335699999998654
No 51
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.32 E-value=0.00082 Score=68.86 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=40.6
Q ss_pred CccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
..|++|.+ ...++.++|||.||..|+...+. . .....||.||..+......
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~-----~----~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQ-----Q----SENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccc-----c----ccCCCCcHHHHHHHHHHHh
Confidence 78999999 88888899999999999987762 1 2334899999887665543
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00016 Score=68.06 Aligned_cols=57 Identities=26% Similarity=0.624 Sum_probs=42.8
Q ss_pred CccCccccccccccCce-----E---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 204 DIELTCPVCLETVFDPV-----S---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv-----~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
..+..|.||++...++. . .+|.|.||..|+..|..+... .......||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCccccc
Confidence 35788999999988877 3 469999999999999632211 123468999999886543
No 53
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00017 Score=67.06 Aligned_cols=47 Identities=38% Similarity=0.776 Sum_probs=39.9
Q ss_pred ccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 205 IELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
....|-||+.-.+|-+.+||-|. .|..|..... -....||+||+++.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-----------~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-----------YQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-----------HhhcCCCccccchH
Confidence 46789999999999999999996 7999987664 34668999999875
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.19 E-value=0.00016 Score=68.94 Aligned_cols=48 Identities=31% Similarity=0.626 Sum_probs=39.0
Q ss_pred cCCccCccccccccccCce----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 202 RLDIELTCPVCLETVFDPV----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.+.+.-+||||++-+..-+ ++.|.|+|=..|+..|+ ...||+||-..+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-------------~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-------------DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc-------------cCcChhhhhhcC
Confidence 4557789999999887665 45799999999999997 457999987655
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0023 Score=60.47 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=42.9
Q ss_pred ccCccccccccccCce-----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 205 IELTCPVCLETVFDPV-----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv-----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
...+||||++-+.-|+ .+.|||.|-..||++|+. ......||.|......+...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~---------k~~~~~cp~c~~katkr~i~ 61 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG---------KKTKMQCPLCSGKATKRQIR 61 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh---------hhhhhhCcccCChhHHHHHH
Confidence 4578999999988763 457999999999999971 24567899998887766644
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.64 E-value=0.0006 Score=64.09 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=40.0
Q ss_pred ccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 208 TCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
.|.||-+.=.|-..-||||..|..|+..|.. ...+..||.||..+.-...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~---------sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQD---------SDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcc---------cCCCCCCCceeeEeccccc
Confidence 5999999888876779999999999988851 1347789999988765543
No 57
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.57 E-value=0.0034 Score=57.32 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=48.2
Q ss_pred CccCccccccccccCc---eEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708 204 DIELTCPVCLETVFDP---VSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS 279 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P---v~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 279 (313)
...+.|||....|..- |.+ +|||+|+..++.+. .....||+|..++...+.+.+.+...-+..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~------------k~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l 178 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL------------KKSKKCPVCGKPFTEEDIIPLNPPEEELEKL 178 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh------------cccccccccCCccccCCEEEecCCccHHHHH
Confidence 4678999999888532 333 89999999999764 1245699999999987766555554445444
Q ss_pred HHHH
Q 044708 280 CREY 283 (313)
Q Consensus 280 ~~~~ 283 (313)
.+.+
T Consensus 179 ~~~~ 182 (260)
T PF04641_consen 179 RERM 182 (260)
T ss_pred HHHH
Confidence 4444
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0013 Score=60.94 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=42.4
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.++-.||||.--....|..||+|.-|..||.+++ .+...|-.|...+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl-----------mN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL-----------MNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHH-----------hcCCeeeEecceeee
Confidence 4678899999877788889999999999999997 778899999887653
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0015 Score=57.87 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=44.3
Q ss_pred ccCccccccccccCceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhh
Q 044708 205 IELTCPVCLETVFDPVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ 268 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 268 (313)
..+.||||.+.+.+.+. -||||.||..|++..+ .....||+|..++..++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkli-----------r~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLI-----------RKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhc-----------cccccccCCCCcCcccceEe
Confidence 56889999999987543 3899999999999987 66788999999988777543
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0017 Score=62.64 Aligned_cols=50 Identities=20% Similarity=0.485 Sum_probs=38.2
Q ss_pred CCccCcccccccccc-----------------CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 203 LDIELTCPVCLETVF-----------------DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~-----------------~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.+...-|+||+..+. +-+.+||.|.|-..|+.+|+. .....||+||.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd----------~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD----------TYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh----------hhcccCCccCCCCC
Confidence 345667999997643 123459999999999999982 35568999999875
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.00068 Score=61.35 Aligned_cols=42 Identities=38% Similarity=0.937 Sum_probs=34.7
Q ss_pred cCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
...|.||++...|.+.|+|||. -|..|- .....||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CG---------------krm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCG---------------KRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhc---------------cccccCchHHHHHH
Confidence 6779999999999999999995 588885 23348999998654
No 62
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.20 E-value=0.0019 Score=46.84 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=25.2
Q ss_pred cCcccccccccc-C---ceEc----ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVF-D---PVSL----TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~-~---Pv~l----~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+..|+||...+. + |+.. .|+..|=..||.+|+.........-......||.|+.+++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 567999998754 2 3332 588899999999998432111100011224699999987653
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0027 Score=59.25 Aligned_cols=45 Identities=33% Similarity=0.787 Sum_probs=34.8
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
...-|.||.+-..+.+.+||||.-| |..-. .....||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs------------~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS------------KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHH------------hhCCCCchhHHHHHH
Confidence 4556999999999999999999876 65433 334569999987653
No 64
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.017 Score=52.52 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=37.0
Q ss_pred ccccccc-cccCceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 208 TCPVCLE-TVFDPVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 208 ~C~IC~~-~~~~Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.||+|.. .+.+|-. -+|||+.|-+|+.+.++ .++..||.|...+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~----------~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS----------LGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh----------cCCCCCCcccchhhhcc
Confidence 4999974 4666632 27999999999999883 67889999987765443
No 65
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.011 Score=54.88 Aligned_cols=68 Identities=25% Similarity=0.506 Sum_probs=46.6
Q ss_pred cCcccccccccc------CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh-hhhhhhhhHHHHH
Q 044708 206 ELTCPVCLETVF------DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML-FLQIYLINGCYIN 278 (313)
Q Consensus 206 ~l~C~IC~~~~~------~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~n~~l~~ 278 (313)
.+.|-||.+.+. .|..+.|||++|..|+.... ......||.||.+..... .+..+..|..+..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~----------~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~ 72 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL----------GNSRILCPFCRETTEIPDGDVKSLQKNFALLQ 72 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHh----------cCceeeccCCCCcccCCchhHhhhhhhHHHHH
Confidence 356888887654 57778899999999998775 255678899999953322 3334455555555
Q ss_pred HHHHH
Q 044708 279 SCREY 283 (313)
Q Consensus 279 l~~~~ 283 (313)
.+...
T Consensus 73 ~~~~~ 77 (296)
T KOG4185|consen 73 AIEHM 77 (296)
T ss_pred HHHHH
Confidence 54443
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.93 E-value=0.0034 Score=42.80 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=37.2
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
....|-.|...-...+.+||||..|..|... ..-..||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-------------~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG-------------ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh-------------hhccCCCCCCCcccCCC
Confidence 4566888888878888999999999999732 23457999999876543
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.87 E-value=0.0077 Score=40.08 Aligned_cols=43 Identities=30% Similarity=0.793 Sum_probs=20.6
Q ss_pred ccccccccc--CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 209 CPVCLETVF--DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 209 C~IC~~~~~--~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
||+|.+.+. +--.. +||+.+|+.|..+.. ......||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~----------~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL----------ENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHT----------TSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHH----------hccCCCCCCCCCCC
Confidence 788888762 22233 599999999998775 13578999999874
No 68
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.85 E-value=0.0017 Score=65.80 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=39.1
Q ss_pred ccCccccccccccCceE---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVFDPVS---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
..-.||+|+..+.+-.. .+|+|.||..|+..|- .....||+||..+...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs-----------R~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS-----------RCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh-----------hhcccCchhhhhhhee
Confidence 45679999988776543 3799999999999885 5677899999886543
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0093 Score=55.01 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=41.6
Q ss_pred CccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 204 DIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+.-.||||+....+|..+. -|-.||..|+-.+. ..-..||+-..+.....
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv-----------~~~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV-----------VNYGHCPVTGYPASVDH 349 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHH-----------HhcCCCCccCCcchHHH
Confidence 45678999999999998875 69999999999987 55678998777665444
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.034 Score=52.88 Aligned_cols=54 Identities=28% Similarity=0.549 Sum_probs=37.8
Q ss_pred ccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
..+.|.||.+...- =+.+||+|.||+.|+..++......+ ......||.+.-+-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg---~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEG---QVSCLKCPDPKCGS 239 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcc---eeeeecCCCCCCcc
Confidence 46789999987543 23579999999999999985433332 24567888665443
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.38 E-value=0.02 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.961 Sum_probs=17.8
Q ss_pred ccCccccccccccCceEcccC
Q 044708 205 IELTCPVCLETVFDPVSLTCG 225 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~Cg 225 (313)
++.+||||++...+.|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999988553
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.0053 Score=55.09 Aligned_cols=52 Identities=19% Similarity=0.546 Sum_probs=40.1
Q ss_pred ccCccccccccccCc----------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDP----------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P----------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
++-.|.||..-+... ..|+|+|+|=-.||..|.- -+....||.|++.+....
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci---------vGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI---------VGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee---------ecCCCCCchHHHHhhHhh
Confidence 567799999876543 4689999999999988861 145678999988876554
No 73
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.28 E-value=0.037 Score=49.17 Aligned_cols=44 Identities=27% Similarity=0.801 Sum_probs=30.2
Q ss_pred Cccccccccc-cCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 207 LTCPVCLETV-FDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 207 l~C~IC~~~~-~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.-|-.|...- .+|.. +.|+|+||..|.... ....||.|++++..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-------------~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-------------SPDVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-------------Cccccccccceeee
Confidence 3476666432 45555 479999999998432 23389999998653
No 74
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.018 Score=57.55 Aligned_cols=35 Identities=37% Similarity=0.831 Sum_probs=29.0
Q ss_pred CCccCcccccccccc----CceEcccCCcchHHHHHHhh
Q 044708 203 LDIELTCPVCLETVF----DPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~----~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+.+-+.|+||+..|. .||.+-|||+.|+.|+....
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly 46 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY 46 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh
Confidence 345678999987764 79999999999999997664
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.61 E-value=0.035 Score=40.68 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=34.7
Q ss_pred Ccccccccccc----CceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 207 LTCPVCLETVF----DPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 207 l~C~IC~~~~~----~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
-.||-|+.-.. -|+.- .|.|.|=..||.+|+ .....||++|++.+..+
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL-----------~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL-----------DTKGVCPLDRQTWVLAD 84 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHH-----------hhCCCCCCCCceeEEec
Confidence 35666665332 13444 599999999999998 45778999999876543
No 76
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.53 E-value=0.047 Score=50.69 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=37.4
Q ss_pred CCccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 203 LDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
..+-+.||||.+.+..|+. -+=||.-|..|-.+ -...||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~--------------~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK--------------VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh--------------hcccCCccccccc
Confidence 3467889999999999974 35689999999743 3568999999987
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.023 Score=53.63 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=32.0
Q ss_pred cCccccccccccCceE---c-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVFDPVS---L-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~---l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
...|.||.+.+-.-.- + .|||+|-..|+..|+. +-+ ....||.|+-.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe-----~~P---s~R~cpic~ik 54 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFE-----GDP---SNRGCPICQIK 54 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHc-----cCC---ccCCCCceeec
Confidence 3469999765543222 3 4999999999999982 211 12589999833
No 78
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.03 Score=53.07 Aligned_cols=55 Identities=27% Similarity=0.488 Sum_probs=38.8
Q ss_pred CCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 203 LDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
...-+.|||=.+--. .|+.+.|||+.|+.-+.+.. ++....+.||.|-......+
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS--------~ng~~sfKCPYCP~e~~~~~ 388 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLS--------KNGSQSFKCPYCPVEQLASD 388 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHh--------hCCCeeeeCCCCCcccCHHh
Confidence 445678999665433 58899999999999998774 11123599999966554433
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.33 E-value=0.033 Score=51.79 Aligned_cols=49 Identities=27% Similarity=0.714 Sum_probs=39.5
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.++...|-||-+-++-...+||+|..|.-|..+..+ -.....||.||..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRA---------LY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRA---------LYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHH---------HHhccCCCccccc
Confidence 456788999999888777899999999999866542 1456789999976
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.32 E-value=0.033 Score=44.91 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=41.8
Q ss_pred cCccccccccccCceEc-c---cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 206 ELTCPVCLETVFDPVSL-T---CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l-~---CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
-.+|.||.+...+...| | ||-+.|..|-...|. ....-+.||+|+..+....
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK--------~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWK--------FCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHH--------HcccCCCCCcccccccccc
Confidence 56899999999999887 3 999999999887772 1245689999998876543
No 81
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.30 E-value=0.062 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.556 Sum_probs=31.3
Q ss_pred ccccccc--cccCceEcccC-----CcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708 208 TCPVCLE--TVFDPVSLTCG-----HILCKMCACSAASVSIVDGLKLADPREKCPLCR 258 (313)
Q Consensus 208 ~C~IC~~--~~~~Pv~l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr 258 (313)
.|.||++ .-.+|...||. |.+=..|+.+|+.. .....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~---------~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE---------SGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH---------cCCCcCCCCC
Confidence 4889997 45577778985 66889999999831 3345899994
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.26 E-value=0.026 Score=52.32 Aligned_cols=51 Identities=25% Similarity=0.661 Sum_probs=35.0
Q ss_pred CccCcccccccccc--CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 204 DIELTCPVCLETVF--DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 204 ~~~l~C~IC~~~~~--~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+++. ||+|.+.+. |--.. +||-..|+-|..... ..-..+||.||.......
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~ir----------q~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR----------QNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHH----------hhccCCChHhhhhccccc
Confidence 3444 999998754 33333 689888999975543 134568999998866544
No 83
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.057 Score=52.05 Aligned_cols=58 Identities=26% Similarity=0.496 Sum_probs=37.9
Q ss_pred ccCcccccc-ccccCce---EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCC--CCcCCccchhhh
Q 044708 205 IELTCPVCL-ETVFDPV---SLTCGHILCKMCACSAASVSIVDGLKLADPREKCP--LCRQASVFMLFL 267 (313)
Q Consensus 205 ~~l~C~IC~-~~~~~Pv---~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~~~ 267 (313)
...+|.||. +...... +..|+|.||..|+.+++.+. ........|| .|...++.....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~-----~~~~~~~~C~~~~C~~~l~~~~c~ 208 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK-----LLSGTVIRCPHDGCESRLTLESCR 208 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh-----hccCCCccCCCCCCCccCCHHHHh
Confidence 367899999 4433212 34699999999999997432 2235677887 455555555543
No 84
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.10 E-value=0.022 Score=59.28 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=39.0
Q ss_pred CCccCcccccccccc-----CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 203 LDIELTCPVCLETVF-----DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
+.....|+||..++. -|-. -.|.|-|-..|+..|++ .++...||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~---------Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFA---------SSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHH---------hcCCCCCCccccccc
Confidence 445567999998875 2322 35999999999999984 266789999998765
No 85
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.29 E-value=0.018 Score=58.47 Aligned_cols=55 Identities=31% Similarity=0.665 Sum_probs=43.2
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+...+.||||...+.+|+.+.|-|.||..|+...+ .. ......||+|+..+....
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f-----~~---~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLF-----ES---KKGPKQCALCKSDIEKRS 72 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhcee-----ec---cCccccchhhhhhhhhhh
Confidence 45688999999999999999999999999986654 11 133778999986655443
No 86
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=0.26 Score=44.00 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=29.9
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+--.|++|+....+||.++=||.||+.||.+++
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 445689999999999999999999999998886
No 87
>PHA03096 p28-like protein; Provisional
Probab=93.07 E-value=0.055 Score=49.90 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=24.4
Q ss_pred CccccccccccC-ce------Ec-ccCCcchHHHHHHhhh
Q 044708 207 LTCPVCLETVFD-PV------SL-TCGHILCKMCACSAAS 238 (313)
Q Consensus 207 l~C~IC~~~~~~-Pv------~l-~CgH~FC~~Cl~~~~~ 238 (313)
-.|.||++.... |+ +| .|.|.||..|+..|..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 579999987542 21 23 5999999999999973
No 88
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.76 E-value=0.053 Score=48.00 Aligned_cols=46 Identities=30% Similarity=0.701 Sum_probs=34.7
Q ss_pred ccCccccccc-cccCceE--c--c-cCCcchHHHHHHhhhhhhhccccCCCCCCCCC--CCcCC
Q 044708 205 IELTCPVCLE-TVFDPVS--L--T-CGHILCKMCACSAASVSIVDGLKLADPREKCP--LCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~-~~~~Pv~--l--~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP--~Cr~~ 260 (313)
++-.||||.. .+-+|-+ + | |-|..|-+|+.+.++ .++..|| -|.+-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs----------~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS----------RGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc----------CCCCCCCCccHHHH
Confidence 4668999985 4455532 2 5 999999999999983 6788999 77543
No 89
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.11 Score=37.82 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=32.5
Q ss_pred CccccccccccC-ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 207 LTCPVCLETVFD-PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 207 l~C~IC~~~~~~-Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
-.||-|.-.=.+ |..+ -|.|.|=..||.+|... ......||.||+..+.
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~--------~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNT--------PTSQGQCPMCRQTWQF 82 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcC--------ccccccCCcchheeEe
Confidence 344544433222 5544 49999999999999732 2445789999987653
No 90
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.57 E-value=0.1 Score=40.37 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=26.1
Q ss_pred CCccCccccccccccCceE--cccCCcchHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVS--LTCGHILCKMCAC 234 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Cl~ 234 (313)
+.++-.|++|...+..++. .||||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4467789999999887664 4999999999974
No 91
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.14 Score=45.02 Aligned_cols=40 Identities=33% Similarity=0.798 Sum_probs=31.1
Q ss_pred cccccccccCceEcccCC-cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 209 CPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 209 C~IC~~~~~~Pv~l~CgH-~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
|-.|.+--..-+.+||.| .+|..|- .+...||+|+.+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~---------------~~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICD---------------ESLRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccc---------------ccCccCCCCcChhhc
Confidence 999998777766689998 6899995 225679999887543
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.12 Score=47.45 Aligned_cols=43 Identities=30% Similarity=0.627 Sum_probs=29.2
Q ss_pred ccccccccccC-ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 208 TCPVCLETVFD-PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 208 ~C~IC~~~~~~-Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.|.-|.--+.. -.++||.|.||..|... ...+.||.|-..+..
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~-------------~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS-------------DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc-------------CccccCcCcccHHHH
Confidence 46667643332 23579999999999742 235789999776653
No 93
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.44 E-value=0.46 Score=31.90 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=22.8
Q ss_pred cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+.|||....+..|+.. .|.|.-|-+ +..++... . ......||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~----~--~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESN----Q--RTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHH----H--HS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHh----h--ccCCeECcCCcCc
Confidence 47899999999999985 699986643 22333110 0 1345899999764
No 94
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.19 E-value=0.17 Score=48.02 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=36.0
Q ss_pred ccCcccccccccc-Cce---EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 205 IELTCPVCLETVF-DPV---SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 205 ~~l~C~IC~~~~~-~Pv---~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
-++.|..|.+.+- .|- .+||.|+|=.+|+.+++. ......||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~---------~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE---------NNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH---------hCCCCCCccHHH
Confidence 4688999999864 222 369999999999988862 256789999994
No 95
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.05 E-value=0.31 Score=44.98 Aligned_cols=59 Identities=27% Similarity=0.470 Sum_probs=41.4
Q ss_pred cccccCCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 198 FDSIRLDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 198 ~~~~~~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
++...+..-++||+=.+.-+ .|+++.|||..-..-+.+.- +.....+.||.|-......
T Consensus 328 p~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS--------~nG~~~FKCPYCP~~~~~~ 389 (396)
T COG5109 328 PKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLS--------QNGVLSFKCPYCPEMSKYE 389 (396)
T ss_pred CCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHh--------hcCcEEeeCCCCCcchhhh
Confidence 34445677899998666543 58999999999988876552 2224579999996654433
No 96
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=0.71 Score=47.97 Aligned_cols=42 Identities=31% Similarity=0.653 Sum_probs=35.4
Q ss_pred ccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
..-.|..|...+.-|++ ..|||+|=..|+. .+...||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e--------------~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE--------------DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc--------------cCcccCCccchh
Confidence 44689999999999976 5899999999994 456899999763
No 97
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.87 Score=40.14 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=40.1
Q ss_pred cCcccccccccc--CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVF--DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~--~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.-.|.+|...+. +.+.|.|-|.|=+.|+.++.+... ......+..||.|..++-..
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lP---anTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLP---ANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCC---CcCCCCcccCCCCCCccCCC
Confidence 446999988765 567789999999999998863211 11124567899999887543
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.06 E-value=0.13 Score=55.32 Aligned_cols=48 Identities=25% Similarity=0.611 Sum_probs=38.9
Q ss_pred cCCccCcccccccccc-CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 202 RLDIELTCPVCLETVF-DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~-~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
++-....|+||++.+. .-....|||.+|..|...|. .....||.|...
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l-----------~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWL-----------YASSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHH-----------HHhccCcchhhh
Confidence 3456679999999998 55567899999999999987 556789999643
No 99
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=0.68 Score=35.75 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=24.8
Q ss_pred ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 223 TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 223 ~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.|.|.|=..||.+|+ .....||+|.++-.
T Consensus 80 ~CNHaFH~hCisrWl-----------ktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWL-----------KTRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHH-----------hhcCcCCCcCccee
Confidence 599999999999998 66779999987643
No 100
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=83.95 E-value=0.083 Score=37.98 Aligned_cols=42 Identities=31% Similarity=0.582 Sum_probs=22.9
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
++.||.|...+.. .=||-+|..|-..+ .....||.|..++..
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~------------~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDY------------KKEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EE------------EEEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEE----eCCEEECccccccc------------eecccCCCcccHHHH
Confidence 3679999876432 12788899997554 345689999888653
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.87 E-value=0.54 Score=31.05 Aligned_cols=35 Identities=23% Similarity=0.631 Sum_probs=22.8
Q ss_pred CceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 218 DPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 218 ~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+--.+.|. |-.|..|+...+ +.+..||+|..+++.
T Consensus 12 ~k~Li~C~dHYLCl~CLt~ml-----------~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 12 NKGLIKCSDHYLCLNCLTLML-----------SRSDRCPICGKPLPT 47 (50)
T ss_dssp -SSEEE-SS-EEEHHHHHHT------------SSSSEETTTTEE---
T ss_pred CCCeeeecchhHHHHHHHHHh-----------ccccCCCcccCcCcc
Confidence 33445777 778999998876 678899999988764
No 102
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=0.72 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=28.8
Q ss_pred ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708 205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS 238 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~ 238 (313)
.-|.|.+|.+-+.|-....| .|-||..|-.+.+.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 45899999999999887766 69999999887763
No 103
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.78 E-value=2.2 Score=38.38 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=38.2
Q ss_pred ccCccccccccccCce----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhh
Q 044708 205 IELTCPVCLETVFDPV----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ 268 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 268 (313)
..++|||-.-.+..-. ..+|||.|-..-+.+. ....|++|..++...+.+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-------------kas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-------------KASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh-------------hhccccccCCcccccCeEe
Confidence 4688999876665443 3489999998887654 3568999999998877543
No 104
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.60 E-value=0.94 Score=43.11 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=26.4
Q ss_pred cCCcchHHHHHHhhhhhhhccccC--CCCCCCCCCCcCCccch
Q 044708 224 CGHILCKMCACSAASVSIVDGLKL--ADPREKCPLCRQASVFM 264 (313)
Q Consensus 224 CgH~FC~~Cl~~~~~~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 264 (313)
|....|..|+.+|++....+..+. .++...||+||+.+-..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 555679999999994332111110 14668999999986543
No 105
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=1.8 Score=42.69 Aligned_cols=34 Identities=26% Similarity=0.652 Sum_probs=28.8
Q ss_pred ccCccccccccccC-ceEcccCCcchHHHHHHhhh
Q 044708 205 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAAS 238 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Cl~~~~~ 238 (313)
....|.||.+.+.. .+.+.|||.||..|...++.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 56789999998875 55678999999999998874
No 106
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=80.51 E-value=1.7 Score=39.92 Aligned_cols=43 Identities=35% Similarity=0.841 Sum_probs=33.0
Q ss_pred cCcccccccccc----CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 206 ELTCPVCLETVF----DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 206 ~l~C~IC~~~~~----~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
...||||.+.+. .|..++|||..=..|+.... -....||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~-----------~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMI-----------CEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHh-----------ccCCCCCcccc
Confidence 344999998754 56668999988888987765 23389999977
No 107
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=79.06 E-value=0.84 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.610 Sum_probs=25.6
Q ss_pred cCccccccccccC--ceE-cccC------CcchHHHHHHhh
Q 044708 206 ELTCPVCLETVFD--PVS-LTCG------HILCKMCACSAA 237 (313)
Q Consensus 206 ~l~C~IC~~~~~~--Pv~-l~Cg------H~FC~~Cl~~~~ 237 (313)
...|.||.+.+.+ -|+ ++|| |.||..|+.+|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 6789999998877 443 5676 568999999994
No 108
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.62 E-value=2 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=23.1
Q ss_pred cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 224 CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 224 CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
=.|+||..|....+ ...||.|...+..++.
T Consensus 27 fEcTFCadCae~~l-------------~g~CPnCGGelv~RP~ 56 (84)
T COG3813 27 FECTFCADCAENRL-------------HGLCPNCGGELVARPI 56 (84)
T ss_pred EeeehhHhHHHHhh-------------cCcCCCCCchhhcCcC
Confidence 45789999997554 4689999988876653
No 109
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.22 E-value=0.95 Score=41.62 Aligned_cols=60 Identities=18% Similarity=0.417 Sum_probs=38.3
Q ss_pred cCcccccccccc-Cc-e-EcccCCcchHHHHHHhhhhh------hhcccc------CCCCCCCCCCCcCCccchh
Q 044708 206 ELTCPVCLETVF-DP-V-SLTCGHILCKMCACSAASVS------IVDGLK------LADPREKCPLCRQASVFML 265 (313)
Q Consensus 206 ~l~C~IC~~~~~-~P-v-~l~CgH~FC~~Cl~~~~~~~------~~~~~~------~~~~~~~CP~Cr~~~~~~~ 265 (313)
.-.|.||+--|. .| . .++|-|-|=..|+.+++..- .++..+ .......||+||..+....
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 556999987655 34 2 36899999999998887221 011110 1123457999999887543
No 110
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=73.27 E-value=1.8 Score=24.87 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=11.8
Q ss_pred ccccccccccCceEc-c-cCCcc
Q 044708 208 TCPVCLETVFDPVSL-T-CGHIL 228 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l-~-CgH~F 228 (313)
+||-|...+..-... | |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 477777665433222 3 77765
No 111
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=72.58 E-value=3.3 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=27.9
Q ss_pred ccccccccccCc--eEcccC--CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 208 TCPVCLETVFDP--VSLTCG--HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 208 ~C~IC~~~~~~P--v~l~Cg--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.|-.|...+..- -..-|. .+||..|....+ ...||.|...++.++
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l-------------~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML-------------NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh-------------cCcCcCCCCccccCC
Confidence 355565443311 122344 489999997654 468999998876543
No 112
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=72.21 E-value=6.9 Score=43.57 Aligned_cols=60 Identities=20% Similarity=0.499 Sum_probs=37.7
Q ss_pred cCCccCcccccccc-c-cCc-eEcccCCcchHHHHHHhhhhhhhccccCCC---CCCCCCCCcCCccchh
Q 044708 202 RLDIELTCPVCLET-V-FDP-VSLTCGHILCKMCACSAASVSIVDGLKLAD---PREKCPLCRQASVFML 265 (313)
Q Consensus 202 ~~~~~l~C~IC~~~-~-~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~---~~~~CP~Cr~~~~~~~ 265 (313)
..+.+-.|-||..- + ..| +.+.|+|.|-..|..+.+.. .|-... +-..||+|..++....
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~----RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLEN----RWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHh----cccCCeeEEeeeecccccchhhhHH
Confidence 34556779999742 3 234 46899999988888766521 111111 2358999988865433
No 113
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.06 E-value=4.8 Score=29.53 Aligned_cols=48 Identities=19% Similarity=0.488 Sum_probs=19.4
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.-.|.||.+.+- ++... .|+-..|+.|..--. ..+...||.|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr----------keg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER----------KEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH----------HTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh----------hcCcccccccCCCccc
Confidence 557999998653 33332 588888999985332 2567899999977654
No 114
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.13 E-value=3.6 Score=27.79 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=24.2
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+.+.||.|.+.+.. ..++.-|..... .......||+|...
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~---------~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHR---------SESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCc---------CCCCCccCCCchhh
Confidence 36889999984432 134444554442 12346889999763
No 115
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=70.89 E-value=6.3 Score=25.46 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=20.9
Q ss_pred cccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
|.+|.++...-+.= .|+-.+=..|+..+++ ......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r---------~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFR---------HRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTT---------T-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHh---------cCCCCCCcCC
Confidence 67888887776653 3887777889988872 1223379987
No 116
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=69.09 E-value=5.6 Score=31.08 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=24.0
Q ss_pred CCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 225 GHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 225 gH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.||..||...+.....+.. ......||.||....
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~--~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL--EDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh--cCCceECCCCCCeeC
Confidence 667999999888743221212 245688999987644
No 117
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=67.96 E-value=3.6 Score=31.17 Aligned_cols=38 Identities=26% Similarity=0.715 Sum_probs=29.9
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.-.|-||...+..| ||.||..|. -....|.+|...+..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CA---------------YkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCA---------------YKKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhh---------------cccCcccccCCeecc
Confidence 45799999877765 899999996 345689999988743
No 118
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=66.89 E-value=3.5 Score=43.11 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=39.3
Q ss_pred CccCcccccccccc--CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 204 DIELTCPVCLETVF--DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 204 ~~~l~C~IC~~~~~--~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
...+.|.||.+.+. .|+- ..|-|+|=..||.+|.+. ..+.......||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs----~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS----SEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH----hhhccCccccCCcccch
Confidence 35788999999865 5553 269999999999999843 22223467899999843
No 119
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.30 E-value=7.8 Score=32.51 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=34.5
Q ss_pred ccCccccccccccCceEcccCCcc-----hHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDPVSLTCGHIL-----CKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~F-----C~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.+-.|-||.+.-. +..-||...- =..|+.+|.+ .++...|+.|+.+...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~---------~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWIN---------TSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHh---------cCCCCcccccCCeEEE
Confidence 4668999998753 3345765422 5789999983 2467789999988653
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.03 E-value=5 Score=37.53 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=34.9
Q ss_pred cCcccccccccc--CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVF--DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~--~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.-.||||.+... +-..+ |||+..|..|+.... .+...||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~-----------~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIS-----------DGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhccc-----------ccCCCCCccCCccccC
Confidence 357999998652 32233 699999999986654 6778999999776543
No 121
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=4 Score=37.46 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=25.7
Q ss_pred cCCcchHHHHHHhhhhhhhcc--ccCCCCCCCCCCCcCCccchh
Q 044708 224 CGHILCKMCACSAASVSIVDG--LKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 224 CgH~FC~~Cl~~~~~~~~~~~--~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
|....|.+|+.+|+....... ..-..++..||.||+..-..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 555678999999972211000 001246789999999865544
No 122
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=5.9 Score=33.77 Aligned_cols=58 Identities=16% Similarity=0.410 Sum_probs=34.9
Q ss_pred cCcccccccccc-----Cce--EcccCCcchHHHHHHhhhhhhhcccc-CCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVF-----DPV--SLTCGHILCKMCACSAASVSIVDGLK-LADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv--~l~CgH~FC~~Cl~~~~~~~~~~~~~-~~~~~~~CP~Cr~~~~~~ 264 (313)
..-|.||.-+-- |-+ .+.||..|=.-|+..|++--. ...+ -..--..||.|..++..+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgil-TsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGIL-TSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHh-hccceeeeeeccCCCCCCcceee
Confidence 345888875422 222 246999999999999983111 1111 001124799999987654
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.79 E-value=5.7 Score=41.29 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.4
Q ss_pred ccCccccccccccCceE----cc---cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVS----LT---CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~----l~---CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+.-+|++|.--+.+|+- .| |+|.||..||..|. +..........|+.|..-
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~-----DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCN-----DQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHH-----HHhhccccccccccHHHH
Confidence 45677777766666442 24 99999999999997 333333445566777543
No 124
>PF15616 TerY-C: TerY-C metal binding domain
Probab=61.73 E-value=4.6 Score=32.83 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=34.3
Q ss_pred cccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 200 SIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 200 ~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
...+...-.||-|...+.-.+- .||+.||.. ......||-|.......
T Consensus 71 tseL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~----------------g~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFAVC-GCGKLFCID----------------GEGEVTCPWCGNEGSFG 118 (131)
T ss_pred hHHhcCCCCCCCCcChhcEEEe-cCCCEEEeC----------------CCCCEECCCCCCeeeec
Confidence 3345566789999987654443 799999953 14578999998876644
No 125
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=59.15 E-value=11 Score=39.35 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=50.2
Q ss_pred ccCcccccc--ccccCceEcccCCcc-----hHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh-----hhhhhhh
Q 044708 205 IELTCPVCL--ETVFDPVSLTCGHIL-----CKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML-----FLQIYLI 272 (313)
Q Consensus 205 ~~l~C~IC~--~~~~~Pv~l~CgH~F-----C~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-----~~~~~~~ 272 (313)
++.+|.||. +.-.+|..-||..+- -+.|+.+|+. .++..+|-.|..++..++ .++..+.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~---------~s~~~kCdiChy~~~Fk~IY~e~mP~~IPf 81 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWME---------CSGTKKCDICHYEYKFKDIYKEDMPQIIPF 81 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHh---------cCCCcceeeecceeeeeeecccCCCcccce
Confidence 568899987 456688888887653 5789999973 367789999998876544 3333345
Q ss_pred hHHHHHHHHHHHHH
Q 044708 273 NGCYINSCREYWEK 286 (313)
Q Consensus 273 n~~l~~l~~~~~~~ 286 (313)
..+++....-.++.
T Consensus 82 siL~rk~a~t~~~~ 95 (1175)
T COG5183 82 SILIRKVADTGWKA 95 (1175)
T ss_pred ehhHHHHHHHHHHH
Confidence 55666666555544
No 126
>PHA02862 5L protein; Provisional
Probab=57.10 E-value=12 Score=30.86 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=34.4
Q ss_pred CccccccccccCceEcccCCc-----chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 207 LTCPVCLETVFDPVSLTCGHI-----LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l~CgH~-----FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
-.|-||.+.-.+. .-||..+ -=..|+.+|.. .+....||.|+.+...+.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn---------~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWIN---------YSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHh---------cCCCcCccCCCCeEEEEE
Confidence 4699999875544 3576542 24789999972 256789999999876443
No 127
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=56.98 E-value=2.3 Score=39.32 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=18.8
Q ss_pred cCccccccccccCceEccc---C--CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVFDPVSLTC---G--HILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~C---g--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.-.||||.....-.+...= | |-+|..|-.+|. -....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~-----------~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR-----------FVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-------------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee-----------ecCCCCcCCCCC
Confidence 4689999986443333322 3 567888887774 445678888554
No 128
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=55.93 E-value=6.7 Score=27.82 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=8.5
Q ss_pred cchHHHHHHhhh
Q 044708 227 ILCKMCACSAAS 238 (313)
Q Consensus 227 ~FC~~Cl~~~~~ 238 (313)
.||+.|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999983
No 129
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=55.93 E-value=3.3 Score=38.65 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=25.6
Q ss_pred cCccccccccccCceEc----ccC--CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVFDPVSL----TCG--HILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l----~Cg--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.-.||||.....--+.. .=| +-+|..|-.+|. .....||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~-----------~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH-----------YVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc-----------ccCccCCCCCCC
Confidence 44799998754322221 123 445777876664 445677777653
No 130
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.01 E-value=7.1 Score=37.71 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=23.6
Q ss_pred cCcccccccccc-----CceEcccCCcchHHHHHHhh
Q 044708 206 ELTCPVCLETVF-----DPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
-..||.|.-.+. .-++-.|||-||..|...|.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK 342 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchh
Confidence 457999987653 33444599999999997774
No 131
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=51.01 E-value=8.5 Score=35.14 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=38.0
Q ss_pred ccCccccccccccC-c--------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFD-P--------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-P--------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
....|++|...+.. | -+++|...+|..=+.+.|=-+.-........++.||.|++.+..+.
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS 229 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS 229 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH
Confidence 46778888876542 2 2357887788776655442111111223467899999999877654
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=51.00 E-value=10 Score=32.18 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=9.1
Q ss_pred CCCCCCCCCcCC
Q 044708 249 DPREKCPLCRQA 260 (313)
Q Consensus 249 ~~~~~CP~Cr~~ 260 (313)
..+..||+|..+
T Consensus 147 e~P~~CPiCga~ 158 (166)
T COG1592 147 EAPEVCPICGAP 158 (166)
T ss_pred CCCCcCCCCCCh
Confidence 456789999765
No 133
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=50.93 E-value=15 Score=38.03 Aligned_cols=69 Identities=26% Similarity=0.572 Sum_probs=43.8
Q ss_pred CCccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
+.-.|.|||+.--+.-|.. ..|.|.-|..=+.- -..........||+|.+......+. .+..+.+++.
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~-------lq~n~~~pTW~CPVC~~~~~~e~l~----iD~~~~~iL~ 371 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSY-------LQMNEQKPTWRCPVCQKAAPFEGLI----IDGYFLNILQ 371 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhh-------HHhccCCCeeeCccCCccccccchh----hhHHHHHHHh
Confidence 4467889999877776654 46777655543311 1122346778999999998887754 4444444444
Q ss_pred H
Q 044708 282 E 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 372 ~ 372 (636)
T KOG2169|consen 372 S 372 (636)
T ss_pred h
Confidence 3
No 134
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=16 Score=37.74 Aligned_cols=57 Identities=26% Similarity=0.594 Sum_probs=39.6
Q ss_pred ccCccccccccccCce----------EcccCCcc--------------------hHHHHHHhhhhhhhccccCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPREKC 254 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 254 (313)
+--+|+-|+.-+.||- -+.||..| |..|..++-.+. ..+-...+..|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~---nRRfHAQp~aC 176 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPL---NRRFHAQPIAC 176 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcc---ccccccccccC
Confidence 5678999998888772 24688888 999998875221 11223567899
Q ss_pred CCCcCCccch
Q 044708 255 PLCRQASVFM 264 (313)
Q Consensus 255 P~Cr~~~~~~ 264 (313)
|.|.-.+...
T Consensus 177 p~CGP~~~l~ 186 (750)
T COG0068 177 PKCGPHLFLV 186 (750)
T ss_pred cccCCCeEEE
Confidence 9998766544
No 135
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.34 E-value=30 Score=29.61 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=20.1
Q ss_pred CCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHHH
Q 044708 249 DPREKCPLCRQASVFMLFLQIYLINGCYINSCREY 283 (313)
Q Consensus 249 ~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~ 283 (313)
...+.||.|..++...+.. .....++..++.+
T Consensus 134 ~~~F~Cp~Cg~~L~~~dn~---~~~~~l~~~I~~l 165 (178)
T PRK06266 134 EYGFRCPQCGEMLEEYDNS---ELIKELKEQIKEL 165 (178)
T ss_pred hcCCcCCCCCCCCeecccH---HHHHHHHHHHHHH
Confidence 4579999999998866532 2334444444444
No 136
>PLN02189 cellulose synthase
Probab=49.47 E-value=12 Score=40.38 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=33.6
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.|.||.+.+. +|-+. .|+--.|+.|.+--. ..+...||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer----------~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER----------REGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhh----------hcCCccCcccCCchh
Confidence 448999999754 33322 488889999984222 266789999998876
No 137
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.35 E-value=12 Score=22.78 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=7.6
Q ss_pred CCCCCCCcCC
Q 044708 251 REKCPLCRQA 260 (313)
Q Consensus 251 ~~~CP~Cr~~ 260 (313)
+..||+|..+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4589999765
No 138
>PLN02436 cellulose synthase A
Probab=49.15 E-value=12 Score=40.46 Aligned_cols=47 Identities=21% Similarity=0.623 Sum_probs=33.7
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.|.||.+.+- +|-+. .|+-..|+.|.+--. ..+...||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer----------~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER----------REGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhh----------hcCCccCcccCCchh
Confidence 448999998753 33332 488889999984222 266789999998876
No 139
>PRK00420 hypothetical protein; Validated
Probab=48.17 E-value=63 Score=25.54 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=9.9
Q ss_pred CCCCCCCCCcCCccc
Q 044708 249 DPREKCPLCRQASVF 263 (313)
Q Consensus 249 ~~~~~CP~Cr~~~~~ 263 (313)
.+...||.|...+..
T Consensus 38 ~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 38 DGEVVCPVHGKVYIV 52 (112)
T ss_pred CCceECCCCCCeeee
Confidence 445678888776553
No 140
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.35 E-value=15 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.755 Sum_probs=8.2
Q ss_pred CCCCCCCCcCC
Q 044708 250 PREKCPLCRQA 260 (313)
Q Consensus 250 ~~~~CP~Cr~~ 260 (313)
....||+|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 46689999764
No 141
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=46.23 E-value=5.7 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=16.3
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHHHh
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCACSA 236 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~~~ 236 (313)
+.-.|.+|...|.--. . -.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4567999998874211 1 269999999998543
No 142
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=7.4 Score=38.11 Aligned_cols=37 Identities=32% Similarity=0.652 Sum_probs=30.4
Q ss_pred ccCCccCccccc-cccccCceEc--ccCCcchHHHHHHhh
Q 044708 201 IRLDIELTCPVC-LETVFDPVSL--TCGHILCKMCACSAA 237 (313)
Q Consensus 201 ~~~~~~l~C~IC-~~~~~~Pv~l--~CgH~FC~~Cl~~~~ 237 (313)
..+.+++.|++| .+.+.+...+ -|.-+||..||....
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l 253 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDAL 253 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccc
Confidence 356789999999 7788888777 389999999997663
No 143
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.61 E-value=7.3 Score=36.43 Aligned_cols=44 Identities=32% Similarity=0.614 Sum_probs=25.8
Q ss_pred ccCccccccccccCceE-c--ccC--CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 205 IELTCPVCLETVFDPVS-L--TCG--HILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~-l--~Cg--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
..-.||||.....--+. + .=| +-+|..|-.+|. -....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~-----------~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH-----------VVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc-----------ccCccCCCCCC
Confidence 35679999876433322 1 223 345777776664 44566777754
No 144
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.52 E-value=5.3 Score=32.43 Aligned_cols=26 Identities=38% Similarity=0.945 Sum_probs=16.7
Q ss_pred CCccCcccccccc-ccCceEcccCCcchHHHH
Q 044708 203 LDIELTCPVCLET-VFDPVSLTCGHILCKMCA 233 (313)
Q Consensus 203 ~~~~l~C~IC~~~-~~~Pv~l~CgH~FC~~Cl 233 (313)
..++.+|.||+.. |.| .|||. |..|-
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~-C~YCq 88 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN-CSYCQ 88 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc-cchhh
Confidence 4578899999975 333 47773 44443
No 145
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=12 Score=39.41 Aligned_cols=35 Identities=23% Similarity=0.597 Sum_probs=28.3
Q ss_pred CCccCcccccccc-ccCceE-cccCCcchHHHHHHhh
Q 044708 203 LDIELTCPVCLET-VFDPVS-LTCGHILCKMCACSAA 237 (313)
Q Consensus 203 ~~~~l~C~IC~~~-~~~Pv~-l~CgH~FC~~Cl~~~~ 237 (313)
++..-.|.+|... +..|-. .||||.|=+.|+.+..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 5567789999875 556765 4999999999998876
No 147
>PF14353 CpXC: CpXC protein
Probab=43.62 E-value=21 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=25.8
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.++||.|...+.-.+-+.-.-..=..=....+ ...-....||.|......
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il--------~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKIL--------DGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH--------cCCcCEEECCCCCCceec
Confidence 36799998877655433222111111111111 112456799999988653
No 148
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=43.13 E-value=27 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.708 Sum_probs=13.6
Q ss_pred ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708 223 TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258 (313)
Q Consensus 223 ~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr 258 (313)
.|++.||..|=.=. ...-..||-|.
T Consensus 26 ~C~~~FC~dCD~fi-----------HE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFI-----------HETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTT-----------TTTS-SSSTT-
T ss_pred CCCCccccCcChhh-----------hccccCCcCCC
Confidence 49999999994221 24566899883
No 149
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.75 E-value=14 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=20.4
Q ss_pred CccccccccccCc----eEcccCCcchHHHHHHh
Q 044708 207 LTCPVCLETVFDP----VSLTCGHILCKMCACSA 236 (313)
Q Consensus 207 l~C~IC~~~~~~P----v~l~CgH~FC~~Cl~~~ 236 (313)
..|++|...|.-- .-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 3588887655421 12369999999998544
No 150
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.67 E-value=19 Score=39.07 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=33.6
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.|.||.+.+. +|-+. .||--.|+.|.+ +- ...+...||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YE---------r~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YE---------RKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hh---------hhcCCccCCccCCchh
Confidence 447999998754 34332 588889999983 21 1267789999998876
No 151
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.65 E-value=20 Score=38.67 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=32.3
Q ss_pred ccCccccccccccCceEcccCC-----cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDPVSLTCGH-----ILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH-----~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
....||-|........--.||. .||..|-.. .....||.|........
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~-------------~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE-------------VEEDECEKCGREPTPYS 677 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc-------------CCCCcCCCCCCCCCccc
Confidence 3467999998754333335985 499999421 34567999998876544
No 152
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.66 E-value=4.6 Score=37.25 Aligned_cols=45 Identities=33% Similarity=0.701 Sum_probs=32.6
Q ss_pred cCcccccccccc------CceEcc--------cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVF------DPVSLT--------CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~------~Pv~l~--------CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
...|.||...+. .|..+. |||+.|..|+..... .....||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~----------~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILL----------QAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHH----------HhhhcCCcccce
Confidence 345888876655 356666 999999999987752 222789999864
No 153
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=39.43 E-value=20 Score=33.44 Aligned_cols=45 Identities=9% Similarity=-0.050 Sum_probs=34.1
Q ss_pred CCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+-..+.|-+|..-+...+..+|+|. ||..|... +....||+|...
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~-------------s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA-------------SASPTSSTCDHN 385 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhc-------------ccCCcccccccc
Confidence 4456789999987766666799995 89999742 457889999654
No 154
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=23 Score=36.52 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=34.7
Q ss_pred ccccccccccCceEcccCC-cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 208 TCPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l~CgH-~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
.|+||-.-..-+..-.||| ..|..|..+..- . .........||+||..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~----~-~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRF----E-LNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhh----h-cccccccccCcccccce
Confidence 4999998877777778999 899999977641 1 11123356679998854
No 155
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=38.46 E-value=17 Score=23.81 Aligned_cols=40 Identities=25% Similarity=0.547 Sum_probs=21.3
Q ss_pred ccccccccc--CceEcccCCcc-----hHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 209 CPVCLETVF--DPVSLTCGHIL-----CKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 209 C~IC~~~~~--~Pv~l~CgH~F-----C~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
|-||++.-. +|...||+-.- =..|+.+|+.. .+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~---------~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE---------SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH---------HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh---------cCCCcCCCC
Confidence 567776543 25677876322 35699999732 345568877
No 156
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.79 E-value=38 Score=22.72 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=7.2
Q ss_pred CCCCCcCCccchh
Q 044708 253 KCPLCRQASVFML 265 (313)
Q Consensus 253 ~CP~Cr~~~~~~~ 265 (313)
.||+|..++....
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 8999999887554
No 157
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.10 E-value=26 Score=37.99 Aligned_cols=47 Identities=30% Similarity=0.628 Sum_probs=33.8
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.|.||.+.+. +|-+. .|+-..|+.|.+--. ..+...||.|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~----------~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYER----------SEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhh----------hcCCccCCccCCchh
Confidence 457999998754 34332 588889999983211 266789999998876
No 158
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.94 E-value=37 Score=30.80 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=35.1
Q ss_pred cCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 206 ELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+++|||=...+.+|+. ..|||.|=+.-+.... . ......||+=..+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l-----~----~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQIL-----C----DEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHh-----c----cCceeecccccCC
Confidence 6789999899999986 4799999999998775 1 1346788864333
No 159
>PLN02400 cellulose synthase
Probab=34.77 E-value=23 Score=38.51 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=33.9
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.-.|.||.+.+- +|-+. .|+---|+.|-+ +- ...+...||.|+.....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YE---------RkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YE---------RKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh-ee---------cccCCccCcccCCcccc
Confidence 448999998754 34332 588889999973 21 13667899999988763
No 160
>PLN02195 cellulose synthase A
Probab=34.66 E-value=31 Score=37.17 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=33.4
Q ss_pred Ccccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 207 LTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 207 l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
-.|.||.+.+. +|-+. .|+-.-|+.|.+ +- ...+...||.|+....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-ye---------r~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YE---------IKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hh---------hhcCCccCCccCCccc
Confidence 47999998654 44432 599899999983 21 1266789999998876
No 161
>PRK11595 DNA utilization protein GntX; Provisional
Probab=33.99 E-value=37 Score=30.05 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=5.3
Q ss_pred ccccccccc
Q 044708 208 TCPVCLETV 216 (313)
Q Consensus 208 ~C~IC~~~~ 216 (313)
.|.+|...+
T Consensus 7 ~C~~C~~~~ 15 (227)
T PRK11595 7 LCWLCRMPL 15 (227)
T ss_pred cCccCCCcc
Confidence 466666544
No 162
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=33.29 E-value=54 Score=27.45 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.8
Q ss_pred CCCCCCCCCcCCccchh
Q 044708 249 DPREKCPLCRQASVFML 265 (313)
Q Consensus 249 ~~~~~CP~Cr~~~~~~~ 265 (313)
...+.||.|..++...+
T Consensus 126 ~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 126 ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred HcCCcCCCCCCEeeecc
Confidence 45799999999987665
No 163
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=32.88 E-value=32 Score=35.58 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=6.5
Q ss_pred CCCCCCCCcCCc
Q 044708 250 PREKCPLCRQAS 261 (313)
Q Consensus 250 ~~~~CP~Cr~~~ 261 (313)
+...||.|...+
T Consensus 40 ~~~fC~~CG~~~ 51 (645)
T PRK14559 40 DEAHCPNCGAET 51 (645)
T ss_pred ccccccccCCcc
Confidence 344566665554
No 164
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.84 E-value=23 Score=26.76 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.4
Q ss_pred cchHHHHHHhhh
Q 044708 227 ILCKMCACSAAS 238 (313)
Q Consensus 227 ~FC~~Cl~~~~~ 238 (313)
.||+.|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999983
No 165
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.84 E-value=2.4e+02 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.705 Sum_probs=16.5
Q ss_pred ccccccccccCceEcccCCcchHHHHHHhh
Q 044708 208 TCPVCLETVFDPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
.||||. .+..+.+|..|+...+
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L 22 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRL 22 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHH
Confidence 499999 4566778999996553
No 166
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=32.27 E-value=16 Score=33.87 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=31.1
Q ss_pred CccCccccccccccCceE-----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 204 DIELTCPVCLETVFDPVS-----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~-----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
.+...|.+|....+.... -.||++||..|-...+.. . .........|+.|-..+
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l---~-~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLL---P-NLSTKPIRVCDICFEEL 224 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccc---c-ccCCCCceecHHHHHHH
Confidence 356789999985332221 269999999997543210 1 11112233788884443
No 167
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.09 E-value=21 Score=28.89 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=12.8
Q ss_pred cccccccCceEcccCCcchHH
Q 044708 211 VCLETVFDPVSLTCGHILCKM 231 (313)
Q Consensus 211 IC~~~~~~Pv~l~CgH~FC~~ 231 (313)
||...-..-+.-.|||+||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 444443332335799999975
No 168
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=31.24 E-value=26 Score=30.88 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=31.7
Q ss_pred CccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 207 LTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
..|.+|..+.-.-+.- +||-.+-..|+..++ .....||.|..
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~-----------q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYL-----------QRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHh-----------cccCcCCchhc
Confidence 4799999987765543 577777789998887 34778999943
No 169
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=30.90 E-value=22 Score=35.49 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=7.6
Q ss_pred ccCcccccccccc
Q 044708 205 IELTCPVCLETVF 217 (313)
Q Consensus 205 ~~l~C~IC~~~~~ 217 (313)
+..-||-|++.+.
T Consensus 25 ~~~yCp~CL~~~p 37 (483)
T PF05502_consen 25 DSYYCPNCLFEVP 37 (483)
T ss_pred ceeECccccccCC
Confidence 3456777765544
No 170
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.12 E-value=17 Score=34.95 Aligned_cols=51 Identities=33% Similarity=0.621 Sum_probs=0.0
Q ss_pred CccccccccccC-------------c-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 207 LTCPVCLETVFD-------------P-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 207 l~C~IC~~~~~~-------------P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..||+=+..+.- | |-+.|||.+-.. .|. ...........||+||.+.+.-.
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg-----~~~~~~~~~r~CPlCr~~g~~V~ 342 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWG-----QDSDRDPRSRTCPLCRQVGPYVP 342 (416)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccc-----cccccccccccCCCccccCCcee
Confidence 568887776543 3 346899976543 221 00011123789999998866544
No 171
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=91 Score=33.64 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=55.0
Q ss_pred CCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
..+++.=|+-..++.+||.+| -|++.|+.=+.+++ -....=|.||.+++..... .|..++.-++
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhl-----------Ls~~tdPFNR~pLt~d~v~----pn~eLK~kI~ 931 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHL-----------LSDCTDPFNREPLTEDMVS----PNEELKAKIR 931 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHH-----------hcCCCCccccccCchhhcC----CCHHHHHHHH
Confidence 456677788888899999998 99999999998887 4444559999999887755 6777777777
Q ss_pred HHHHHH
Q 044708 282 EYWEKR 287 (313)
Q Consensus 282 ~~~~~~ 287 (313)
.|..++
T Consensus 932 ~~~~ek 937 (943)
T KOG2042|consen 932 CWIKEK 937 (943)
T ss_pred HHHHHh
Confidence 765543
No 172
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=28.97 E-value=13 Score=25.35 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=11.9
Q ss_pred ccCCcchHHHHHHh
Q 044708 223 TCGHILCKMCACSA 236 (313)
Q Consensus 223 ~CgH~FC~~Cl~~~ 236 (313)
.||+.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998665
No 173
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.91 E-value=38 Score=26.60 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=8.2
Q ss_pred CccCcccccccccc
Q 044708 204 DIELTCPVCLETVF 217 (313)
Q Consensus 204 ~~~l~C~IC~~~~~ 217 (313)
....+||-|..-|.
T Consensus 7 GtKR~Cp~CG~kFY 20 (108)
T PF09538_consen 7 GTKRTCPSCGAKFY 20 (108)
T ss_pred CCcccCCCCcchhc
Confidence 34556777765554
No 174
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.77 E-value=25 Score=21.76 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=8.6
Q ss_pred CccccccccccCc
Q 044708 207 LTCPVCLETVFDP 219 (313)
Q Consensus 207 l~C~IC~~~~~~P 219 (313)
++||-|...+.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4677777766644
No 175
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=28.71 E-value=32 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=12.8
Q ss_pred CcchhchhHHHHHHHHH
Q 044708 65 PVCDGAFFPTLVNDMSA 81 (313)
Q Consensus 65 ~~~~~~Ff~~l~~El~k 81 (313)
..-..+||.+||+-|++
T Consensus 88 S~SQqdFFRMLDeKIek 104 (115)
T PF15389_consen 88 SESQQDFFRMLDEKIEK 104 (115)
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 34577999999976654
No 176
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.55 E-value=18 Score=33.54 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=36.2
Q ss_pred CCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
....-+|-||...+.-|.... |+|.||..|...+. .....||.|+...
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~-----------~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNF-----------AMGNDCPDCRGKI 150 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhh-----------hhhhccchhhcCc
Confidence 345678999999999887764 99999999987776 3345566665543
No 177
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.87 E-value=11 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=13.2
Q ss_pred CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 226 HILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 226 H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
|.||..|=.... .........||.|...
T Consensus 3 ~rfC~~CG~~t~-------~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTK-------PAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEE-------E-SSSS-EEESSSS-E
T ss_pred CcccCcCCcccc-------CCCCcCEeECCCCcCE
Confidence 678888864332 1122456788888653
No 178
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=27.75 E-value=40 Score=21.20 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=14.9
Q ss_pred cccccccccC-ceEcc-cCCcchHH
Q 044708 209 CPVCLETVFD-PVSLT-CGHILCKM 231 (313)
Q Consensus 209 C~IC~~~~~~-Pv~l~-CgH~FC~~ 231 (313)
|.+|.....- |..=. |+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5567665444 76655 88888863
No 179
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.57 E-value=37 Score=30.77 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=15.2
Q ss_pred Ccccccccccc-CceEc--ccCCcc
Q 044708 207 LTCPVCLETVF-DPVSL--TCGHIL 228 (313)
Q Consensus 207 l~C~IC~~~~~-~Pv~l--~CgH~F 228 (313)
+.||+|...+. .+-.+ +.||+|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 78999998775 22333 567877
No 180
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=26.40 E-value=7.7 Score=29.01 Aligned_cols=39 Identities=26% Similarity=0.691 Sum_probs=29.0
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
...|-||...+..| |..||..|. .....|..|.+.+..+
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCA---------------Y~KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCA---------------YKKGICAMCGKKILNT 92 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhh---------------hhhhHHHHhhhHhhcc
Confidence 35799999999888 666999997 2345688887765443
No 181
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=26.38 E-value=2.5e+02 Score=30.74 Aligned_cols=74 Identities=15% Similarity=0.339 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhh-HHHHHHHHccccCCCccHHHHHHHhHHHHHHHHhhHHHHHH
Q 044708 71 FFPTLVNDMSAVVRYFNKRAKKLIN------LHQAAGL-KKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRK 143 (313)
Q Consensus 71 Ff~~l~~El~ki~~ff~~r~~~l~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~y~~lN~tg~rK 143 (313)
++-.--.||.+|..||..++..++. .+...+. ...+++.++.. . ..+..-.|...|..++|.
T Consensus 807 ~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~~~ll~~AK~~G--F---------sD~QIa~~i~s~El~vR~ 875 (1435)
T KOG0370|consen 807 YSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLPKELLLRAKKLG--F---------SDKQIAKFIGSTELAVRR 875 (1435)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHcC--C---------cHHHHHHHhCccHHHHHH
Confidence 3333445999999999998887642 2211111 11222222211 1 112355566778888999
Q ss_pred HHhhcCChhhHH
Q 044708 144 ILKKYDKSPWLR 155 (313)
Q Consensus 144 ilkk~~k~~~L~ 155 (313)
+=+..+=.||..
T Consensus 876 ~R~~~gi~P~VK 887 (1435)
T KOG0370|consen 876 LRKELGIHPFVK 887 (1435)
T ss_pred HHHhcCCCchhh
Confidence 988888888843
No 182
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=65 Score=29.29 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=36.9
Q ss_pred cCCccCccccccccccCceE----cccC-----CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 202 RLDIELTCPVCLETVFDPVS----LTCG-----HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~----l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
+.+.+-.|=||...=.|-.. -||. |--=..|+.+|.+.... ........||.|+....
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~---~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR---GNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc---CCCCceeechhhcchhe
Confidence 34567789999987554332 2554 22357899999842211 12245678999998854
No 183
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.63 E-value=56 Score=18.57 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.6
Q ss_pred CCCCCCcCCcc
Q 044708 252 EKCPLCRQASV 262 (313)
Q Consensus 252 ~~CP~Cr~~~~ 262 (313)
..||+|.+.+.
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 36999988873
No 184
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.56 E-value=14 Score=20.48 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=4.8
Q ss_pred CCCCCCCcCC
Q 044708 251 REKCPLCRQA 260 (313)
Q Consensus 251 ~~~CP~Cr~~ 260 (313)
...||.|..+
T Consensus 13 ~~fC~~CG~~ 22 (23)
T PF13240_consen 13 AKFCPNCGTP 22 (23)
T ss_pred CcchhhhCCc
Confidence 3345555443
No 185
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=25.52 E-value=38 Score=35.55 Aligned_cols=56 Identities=27% Similarity=0.492 Sum_probs=38.2
Q ss_pred ccCccccccccccCce----------EcccCCcc--------------------hHHHHHHhhhhhhhccccCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPREKC 254 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 254 (313)
+--.|+-|+.-+.||- -+.||..| |..|..++.+. ...+-......|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p---~~rr~h~~~~~C 143 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDP---LDRRFHAQPIAC 143 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCC---ccccCCCCCccC
Confidence 5567999988877762 13577777 99999887521 112223456799
Q ss_pred CCCcCCccc
Q 044708 255 PLCRQASVF 263 (313)
Q Consensus 255 P~Cr~~~~~ 263 (313)
|.|.-.+..
T Consensus 144 ~~Cgp~l~l 152 (711)
T TIGR00143 144 PRCGPQLNF 152 (711)
T ss_pred CCCCcEEEE
Confidence 999877764
No 186
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.23 E-value=24 Score=37.16 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=25.8
Q ss_pred ccCccccccccccCceE--cccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVS--LTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Cl~~~~ 237 (313)
..-.|..|...+++-.- ..||+.+|..|+..|.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 34579999988776443 3699999999998874
No 187
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.72 E-value=59 Score=31.80 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=37.6
Q ss_pred CccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 207 LTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+.|.|-.++..+||.-| -||.|=++-|+++. .....||+-..+++..
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI-----------~e~G~DPIt~~pLs~e 48 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYI-----------AETGKDPITNEPLSIE 48 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHH-----------HHcCCCCCCCCcCCHH
Confidence 35999999999999876 99999999999997 3445677777665543
No 188
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.64 E-value=1.4e+02 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCCCCCCCCcCCccchh
Q 044708 249 DPREKCPLCRQASVFML 265 (313)
Q Consensus 249 ~~~~~CP~Cr~~~~~~~ 265 (313)
...+.||.|...+...+
T Consensus 130 ~~~F~Cp~Cg~~L~~~d 146 (176)
T COG1675 130 ELGFTCPKCGEDLEEYD 146 (176)
T ss_pred HhCCCCCCCCchhhhcc
Confidence 34589999999988665
No 189
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.11 E-value=48 Score=31.01 Aligned_cols=47 Identities=34% Similarity=0.776 Sum_probs=27.4
Q ss_pred Ccccccccccc-------------Cc-eEcccCCcchHHHHHHhhhhhhhcccc--CCCCCCCCCCCcCCccc
Q 044708 207 LTCPVCLETVF-------------DP-VSLTCGHILCKMCACSAASVSIVDGLK--LADPREKCPLCRQASVF 263 (313)
Q Consensus 207 l~C~IC~~~~~-------------~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~--~~~~~~~CP~Cr~~~~~ 263 (313)
-.||+=+..+. .| |-+.|||.--.. .| +.+ .......||+||...+.
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~W-------G~~e~~g~~~r~CPmC~~~gp~ 353 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NW-------GVRENTGQRERECPMCRVVGPY 353 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEecccccccc---cc-------ccccccCcccCcCCeeeeecce
Confidence 35888777654 34 347899963321 11 111 12346789999987543
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.72 E-value=55 Score=29.30 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.7
Q ss_pred chhchhHHHHHHHHHHHHHHHHHHHHHH
Q 044708 67 CDGAFFPTLVNDMSAVVRYFNKRAKKLI 94 (313)
Q Consensus 67 ~~~~Ff~~l~~El~ki~~ff~~r~~~l~ 94 (313)
.+..|..++..|++.+..=+...++.|.
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888877766666663
No 191
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.57 E-value=31 Score=21.12 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=8.0
Q ss_pred CCCCCCCcCCc
Q 044708 251 REKCPLCRQAS 261 (313)
Q Consensus 251 ~~~CP~Cr~~~ 261 (313)
...||.|...+
T Consensus 25 ~v~C~~C~~~~ 35 (38)
T TIGR02098 25 KVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEE
Confidence 56788887654
No 192
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.36 E-value=1.1e+02 Score=27.41 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=37.0
Q ss_pred cCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCC--CCcCCccchhh
Q 044708 206 ELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCP--LCRQASVFMLF 266 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~~ 266 (313)
+.+|||-+.....|+. ..|.|.|=..=|.... + ......|| .|.+..+.++.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~l-----q----~~~trvcp~~~Csq~~~~~~~ 243 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKL-----Q----VECTRVCPRLICSQKEVVDPY 243 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHh-----c----CCceeecchhhcchheeccch
Confidence 5789998888888875 4699999998887765 1 13456787 46555554443
No 193
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=23.35 E-value=37 Score=32.05 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=5.0
Q ss_pred Ccccccccccc
Q 044708 207 LTCPVCLETVF 217 (313)
Q Consensus 207 l~C~IC~~~~~ 217 (313)
..||-|++.+.
T Consensus 46 hfCp~CLEn~p 56 (449)
T KOG3896|consen 46 HFCPRCLENSP 56 (449)
T ss_pred ccchhhccCCC
Confidence 34555554433
No 194
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=89 Score=28.41 Aligned_cols=71 Identities=13% Similarity=0.036 Sum_probs=53.4
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
...+.+.|.|=.+++.+||.+|-|=++=+.=|.++.. .-+.-=|+-|.++.....+ .|..++..+.
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~----------rvghfdpvtr~~Lte~q~i----pN~alkevIa 272 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQ----------RVGHFDPVTRWPLTEYQLI----PNLALKEVIA 272 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHH----------HhccCCchhcccCCHHhhc----cchHHHHHHH
Confidence 4557788899999999999999999999999988872 1122236666667666665 7778888787
Q ss_pred HHHHH
Q 044708 282 EYWEK 286 (313)
Q Consensus 282 ~~~~~ 286 (313)
.|.+.
T Consensus 273 ~fl~~ 277 (284)
T KOG4642|consen 273 AFLKE 277 (284)
T ss_pred HHHHh
Confidence 77553
No 195
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.06 E-value=1e+02 Score=21.08 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=23.0
Q ss_pred ccCccccccccc--cCceEc--ccCCcchHHHHH
Q 044708 205 IELTCPVCLETV--FDPVSL--TCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~--~~Pv~l--~CgH~FC~~Cl~ 234 (313)
..-.|++|.+.| .+.++. .||-.+=+.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 356799999998 566654 499888888874
No 196
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.07 E-value=51 Score=34.55 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=24.2
Q ss_pred ccCccccccccccCce--EcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPV--SLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv--~l~CgH~FC~~Cl~~~~ 237 (313)
..+.|.||.-.+.--. ...|||..=..|..+|+
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf 1061 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWF 1061 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHH
Confidence 3456888865554332 24799999999999999
No 197
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.25 E-value=51 Score=31.02 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=23.3
Q ss_pred cccccccc-ccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708 208 TCPVCLET-VFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258 (313)
Q Consensus 208 ~C~IC~~~-~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr 258 (313)
.|-.|.+- ...+... .|.+.||..|=.-.. ..-..||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iH-----------esLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIH-----------ESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHH-----------hhhhcCCCcC
Confidence 38788443 3333332 588888888843221 3345688885
No 198
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.94 E-value=43 Score=26.47 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=27.0
Q ss_pred cCccccccccc---cC-ceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 206 ELTCPVCLETV---FD-PVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 206 ~l~C~IC~~~~---~~-Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
+-.|.+|...| .+ +.. ..|+|.+|..|-.. ........|.+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----------~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----------SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----------TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc----------CCCCCCEEChhhHH
Confidence 45799998753 22 222 46999999999521 11245668888854
No 199
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.64 E-value=66 Score=28.66 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=19.8
Q ss_pred chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 228 LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 228 FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
-|.+|-.... .+.+.||+|......++
T Consensus 251 ~ClsChqqIH-----------RNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIH-----------RNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHh-----------cCCCCCcchhhccccCC
Confidence 4778876654 67889999988766544
No 200
>PRK01343 zinc-binding protein; Provisional
Probab=20.38 E-value=80 Score=21.82 Aligned_cols=14 Identities=36% Similarity=0.897 Sum_probs=11.0
Q ss_pred CCCCCCCCCcCCcc
Q 044708 249 DPREKCPLCRQASV 262 (313)
Q Consensus 249 ~~~~~CP~Cr~~~~ 262 (313)
.....||+|++++.
T Consensus 7 ~p~~~CP~C~k~~~ 20 (57)
T PRK01343 7 RPTRPCPECGKPST 20 (57)
T ss_pred CCCCcCCCCCCcCc
Confidence 45678999999865
No 201
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=48 Score=32.62 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=29.0
Q ss_pred CceEcccCCcchHHHHHHhhhhhh-----------hcc--cc--CCCCCCCCCCCcCCccchh
Q 044708 218 DPVSLTCGHILCKMCACSAASVSI-----------VDG--LK--LADPREKCPLCRQASVFML 265 (313)
Q Consensus 218 ~Pv~l~CgH~FC~~Cl~~~~~~~~-----------~~~--~~--~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+|.=.|||.||..|...|.+... ... .- -..+...||.|..++....
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 345557999999999877753220 000 00 0234456999988876544
Done!