Query 044708
Match_columns 313
No_of_seqs 372 out of 1754
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 99.6 1.2E-15 4E-20 114.5 5.6 71 202-287 10-80 (85)
2 1t1h_A Gspef-atpub14, armadill 99.6 9.4E-16 3.2E-20 112.8 4.3 70 202-285 4-73 (78)
3 3ztg_A E3 ubiquitin-protein li 99.6 3.9E-15 1.3E-19 113.0 6.6 74 201-287 8-83 (92)
4 2ckl_A Polycomb group ring fin 99.6 2.5E-15 8.5E-20 117.7 5.4 79 202-291 11-90 (108)
5 1wgm_A Ubiquitin conjugation f 99.6 5.3E-15 1.8E-19 113.9 7.1 70 202-286 18-88 (98)
6 2kre_A Ubiquitin conjugation f 99.5 3.9E-15 1.3E-19 115.0 5.7 70 202-286 25-94 (100)
7 2y43_A E3 ubiquitin-protein li 99.5 7.3E-15 2.5E-19 113.1 5.4 74 201-289 17-91 (99)
8 4ayc_A E3 ubiquitin-protein li 99.5 1E-14 3.5E-19 119.2 4.6 66 204-282 51-116 (138)
9 3fl2_A E3 ubiquitin-protein li 99.5 1.4E-14 4.8E-19 116.2 4.1 70 202-284 48-117 (124)
10 3lrq_A E3 ubiquitin-protein li 99.5 6E-15 2E-19 114.0 1.2 70 200-283 16-86 (100)
11 3l11_A E3 ubiquitin-protein li 99.5 2E-14 6.9E-19 113.7 3.8 75 202-286 11-88 (115)
12 1jm7_B BARD1, BRCA1-associated 99.5 1.6E-14 5.5E-19 114.7 3.0 72 200-288 16-88 (117)
13 2yu4_A E3 SUMO-protein ligase 99.4 9.7E-14 3.3E-18 105.9 5.5 74 204-286 5-82 (94)
14 2egp_A Tripartite motif-contai 99.4 6.4E-15 2.2E-19 108.4 -1.7 62 202-267 8-69 (79)
15 1z6u_A NP95-like ring finger p 99.4 7.2E-14 2.5E-18 115.8 4.2 69 203-284 75-143 (150)
16 2ecw_A Tripartite motif-contai 99.4 1.3E-14 4.5E-19 107.9 -0.8 61 201-266 14-74 (85)
17 2f42_A STIP1 homology and U-bo 99.4 1.7E-13 5.8E-18 116.2 5.7 70 203-286 103-172 (179)
18 2ysl_A Tripartite motif-contai 99.4 2.2E-13 7.6E-18 98.6 5.4 57 201-265 15-71 (73)
19 2djb_A Polycomb group ring fin 99.4 1.3E-13 4.3E-18 99.9 3.9 56 200-266 9-65 (72)
20 2yur_A Retinoblastoma-binding 99.4 1.2E-13 4E-18 100.6 3.4 56 201-265 10-66 (74)
21 2ecy_A TNF receptor-associated 99.4 2.2E-13 7.4E-18 96.9 4.6 54 202-265 11-64 (66)
22 2c2l_A CHIP, carboxy terminus 99.4 1.8E-13 6E-18 123.9 5.1 69 203-285 205-273 (281)
23 2d8t_A Dactylidin, ring finger 99.4 3.8E-13 1.3E-17 97.1 4.2 52 203-265 12-63 (71)
24 2ecv_A Tripartite motif-contai 99.3 3E-14 1E-18 106.0 -2.1 61 201-266 14-74 (85)
25 2csy_A Zinc finger protein 183 99.3 4.2E-13 1.4E-17 99.3 3.9 50 202-262 11-60 (81)
26 1jm7_A BRCA1, breast cancer ty 99.3 2.3E-13 8E-18 106.7 2.6 58 202-267 17-74 (112)
27 2ysj_A Tripartite motif-contai 99.3 8.3E-13 2.8E-17 92.9 4.9 49 201-257 15-63 (63)
28 2ckl_B Ubiquitin ligase protei 99.3 5.2E-13 1.8E-17 112.2 3.9 72 202-286 50-122 (165)
29 3hct_A TNF receptor-associated 99.3 7.7E-13 2.6E-17 105.1 3.4 55 202-266 14-68 (118)
30 2ct2_A Tripartite motif protei 99.3 1.5E-12 5E-17 97.6 3.9 57 201-265 10-70 (88)
31 3htk_C E3 SUMO-protein ligase 99.3 3.4E-12 1.2E-16 113.4 6.0 72 202-286 177-251 (267)
32 2ecj_A Tripartite motif-contai 99.3 3.1E-12 1.1E-16 88.1 4.4 48 202-257 11-58 (58)
33 3ng2_A RNF4, snurf, ring finge 99.3 7.8E-13 2.7E-17 95.1 1.3 53 203-266 7-66 (71)
34 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.6E-17 93.2 2.4 51 202-263 11-68 (69)
35 1rmd_A RAG1; V(D)J recombinati 99.3 1.2E-12 4E-17 103.6 2.3 55 202-266 19-73 (116)
36 1g25_A CDK-activating kinase a 99.3 2.4E-12 8E-17 91.1 3.4 51 205-265 2-57 (65)
37 3knv_A TNF receptor-associated 99.2 8.6E-13 2.9E-17 108.2 0.8 53 201-263 26-78 (141)
38 1e4u_A Transcriptional repress 99.2 6.1E-12 2.1E-16 92.5 4.6 54 202-265 7-64 (78)
39 1bor_A Transcription factor PM 99.2 3.6E-12 1.2E-16 87.7 2.7 48 204-265 4-51 (56)
40 2xeu_A Ring finger protein 4; 99.2 4E-12 1.4E-16 89.2 1.6 50 205-265 2-58 (64)
41 1iym_A EL5; ring-H2 finger, ub 99.2 1.4E-11 4.8E-16 84.0 4.2 49 203-262 2-54 (55)
42 2ecn_A Ring finger protein 141 99.2 5.1E-12 1.7E-16 90.6 2.0 52 202-265 11-62 (70)
43 2ect_A Ring finger protein 126 99.2 1.2E-11 4.2E-16 90.5 3.9 53 202-265 11-66 (78)
44 3hcs_A TNF receptor-associated 99.2 9E-12 3.1E-16 105.0 3.4 56 202-267 14-69 (170)
45 2kiz_A E3 ubiquitin-protein li 99.2 1.6E-11 5.6E-16 87.7 3.7 51 203-264 11-64 (69)
46 1chc_A Equine herpes virus-1 r 99.1 1.4E-11 4.6E-16 87.8 2.5 48 205-263 4-52 (68)
47 2ecm_A Ring finger and CHY zin 99.1 2E-11 6.7E-16 83.2 2.6 47 205-262 4-54 (55)
48 2l0b_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 91.0 4.0 50 203-263 37-89 (91)
49 1x4j_A Ring finger protein 38; 99.1 2.5E-11 8.6E-16 88.3 2.7 50 203-263 20-72 (75)
50 2ep4_A Ring finger protein 24; 99.1 3.2E-11 1.1E-15 87.4 2.8 51 202-263 11-64 (74)
51 4ap4_A E3 ubiquitin ligase RNF 99.1 5.7E-11 2E-15 95.4 3.1 51 204-265 5-62 (133)
52 2ecg_A Baculoviral IAP repeat- 99.0 4E-11 1.4E-15 87.4 0.6 48 202-264 21-69 (75)
53 4ic3_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 84.8 2.7 48 202-264 20-68 (74)
54 1v87_A Deltex protein 2; ring- 98.9 3.5E-10 1.2E-14 88.8 3.7 54 205-264 24-95 (114)
55 1wim_A KIAA0161 protein; ring 98.9 7.1E-10 2.4E-14 84.2 4.7 58 205-265 4-68 (94)
56 2vje_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 79.4 3.1 49 204-263 6-57 (64)
57 2ecl_A Ring-box protein 2; RNF 98.9 9.3E-10 3.2E-14 81.3 4.0 49 205-264 14-77 (81)
58 2y1n_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 104.4 4.2 51 205-265 331-381 (389)
59 2vje_B MDM4 protein; proto-onc 98.8 1.1E-09 3.9E-14 76.9 2.9 48 205-263 6-56 (63)
60 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 80.5 2.7 47 203-264 15-62 (79)
61 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.3E-14 86.9 2.9 52 204-266 70-128 (133)
62 2bay_A PRE-mRNA splicing facto 98.8 1.3E-09 4.6E-14 76.0 1.4 51 206-267 3-54 (61)
63 2ea5_A Cell growth regulator w 98.8 3E-09 1E-13 75.9 2.9 46 204-264 13-59 (68)
64 3dpl_R Ring-box protein 1; ubi 98.7 8.4E-09 2.9E-13 80.1 4.5 48 205-263 36-101 (106)
65 3t6p_A Baculoviral IAP repeat- 98.6 6.7E-09 2.3E-13 96.9 1.2 48 202-264 291-339 (345)
66 4a0k_B E3 ubiquitin-protein li 98.4 3.6E-08 1.2E-12 77.7 0.2 47 206-263 48-112 (117)
67 2d8s_A Cellular modulator of i 98.2 1.4E-06 4.9E-11 63.9 4.0 52 205-265 14-72 (80)
68 3vk6_A E3 ubiquitin-protein li 97.7 2.8E-05 9.5E-10 58.6 3.6 47 208-264 3-50 (101)
69 2ct0_A Non-SMC element 1 homol 97.3 0.00024 8.2E-09 51.0 4.9 51 205-264 14-65 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.0002 6.7E-09 65.9 3.8 61 204-264 306-374 (381)
71 3m62_A Ubiquitin conjugation f 97.1 0.00038 1.3E-08 72.0 5.7 74 201-289 886-960 (968)
72 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00039 1.3E-08 47.8 3.5 50 205-263 5-59 (60)
73 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.0005 1.7E-08 52.1 2.4 32 205-236 2-36 (101)
74 3nw0_A Non-structural maintena 92.3 0.12 4E-06 45.3 4.3 50 206-264 180-230 (238)
75 2cs3_A Protein C14ORF4, MY039 91.7 0.33 1.1E-05 34.7 5.2 34 205-238 14-51 (93)
76 3i2d_A E3 SUMO-protein ligase 89.5 0.39 1.3E-05 44.6 5.2 64 205-281 248-314 (371)
77 4fo9_A E3 SUMO-protein ligase 88.2 0.54 1.8E-05 43.5 5.1 64 204-280 213-279 (360)
78 2ko5_A Ring finger protein Z; 82.4 0.83 2.8E-05 33.7 2.7 49 203-264 25-74 (99)
79 1weo_A Cellulose synthase, cat 80.8 2.1 7.1E-05 31.3 4.3 48 206-263 16-70 (93)
80 2lbm_A Transcriptional regulat 73.1 4.4 0.00015 32.3 4.7 54 205-260 62-117 (142)
81 3mjh_B Early endosome antigen 72.4 0.42 1.4E-05 28.5 -1.1 17 205-221 4-20 (34)
82 1vfy_A Phosphatidylinositol-3- 62.0 3.7 0.00013 28.6 1.9 29 206-234 11-43 (73)
83 2jne_A Hypothetical protein YF 60.5 0.72 2.5E-05 34.2 -2.2 42 206-263 32-73 (101)
84 1joc_A EEA1, early endosomal a 59.8 3.3 0.00011 32.2 1.4 30 205-234 68-101 (125)
85 3ql9_A Transcriptional regulat 59.5 6.1 0.00021 30.9 2.9 54 206-259 57-110 (129)
86 2yw8_A RUN and FYVE domain-con 55.9 4.7 0.00016 28.7 1.6 31 205-235 18-52 (82)
87 2gmg_A Hypothetical protein PF 55.0 3.7 0.00013 30.9 0.9 30 217-262 66-95 (105)
88 1z2q_A LM5-1; membrane protein 54.8 5 0.00017 28.8 1.6 30 205-234 20-53 (84)
89 2xqn_T Testin, TESS; metal-bin 53.9 9.4 0.00032 29.0 3.2 46 205-263 29-75 (126)
90 1m3v_A FLIN4, fusion of the LI 53.3 9.4 0.00032 29.1 3.1 50 205-265 31-83 (122)
91 1x4u_A Zinc finger, FYVE domai 52.2 5.2 0.00018 28.6 1.3 30 205-234 13-46 (84)
92 3t7l_A Zinc finger FYVE domain 51.1 6.7 0.00023 28.5 1.8 31 205-235 19-53 (90)
93 2ct7_A Ring finger protein 31; 50.8 5.3 0.00018 28.7 1.2 28 209-236 28-61 (86)
94 1z60_A TFIIH basal transcripti 50.7 14 0.00047 24.8 3.1 40 207-257 16-58 (59)
95 1dvp_A HRS, hepatocyte growth 50.6 5 0.00017 34.2 1.2 32 204-235 159-194 (220)
96 1y02_A CARP2, FYVE-ring finger 50.0 4.6 0.00016 31.2 0.8 30 205-234 18-51 (120)
97 2lri_C Autoimmune regulator; Z 48.4 21 0.00071 24.3 3.8 48 205-261 11-60 (66)
98 2o35_A Hypothetical protein DU 46.3 7.1 0.00024 29.0 1.2 12 227-238 42-53 (105)
99 1wfk_A Zinc finger, FYVE domai 46.3 6.2 0.00021 28.6 0.9 31 205-235 8-42 (88)
100 2fiy_A Protein FDHE homolog; F 46.1 2.9 9.8E-05 37.9 -1.1 46 204-260 180-231 (309)
101 2l5u_A Chromodomain-helicase-D 46.1 20 0.00069 23.8 3.5 47 204-259 9-57 (61)
102 3fyb_A Protein of unknown func 46.1 7.2 0.00025 28.9 1.2 12 227-238 41-52 (104)
103 3zyq_A Hepatocyte growth facto 44.6 8.2 0.00028 33.1 1.6 31 205-235 163-197 (226)
104 3mpx_A FYVE, rhogef and PH dom 43.9 4.8 0.00017 37.6 0.0 52 205-260 374-429 (434)
105 4g9i_A Hydrogenase maturation 42.3 10 0.00035 38.6 2.1 57 205-264 105-191 (772)
106 3ttc_A HYPF, transcriptional r 42.1 11 0.00036 37.7 2.1 54 205-261 16-99 (657)
107 1wd2_A Ariadne-1 protein homol 41.7 2.5 8.7E-05 28.4 -1.7 30 207-236 7-44 (60)
108 2rgt_A Fusion of LIM/homeobox 41.1 26 0.00089 28.1 4.1 33 205-237 32-64 (169)
109 2xjy_A Rhombotin-2; oncoprotei 40.7 18 0.00062 27.5 2.9 33 205-237 28-63 (131)
110 3lqh_A Histone-lysine N-methyl 40.3 43 0.0015 27.6 5.3 55 207-262 3-65 (183)
111 2jrp_A Putative cytoplasmic pr 38.9 1.7 5.7E-05 31.3 -3.1 10 207-216 3-12 (81)
112 2pv0_B DNA (cytosine-5)-methyl 38.5 15 0.00051 34.2 2.4 54 205-260 92-148 (386)
113 3vth_A Hydrogenase maturation 38.3 13 0.00043 37.9 2.0 56 205-263 110-195 (761)
114 2cup_A Skeletal muscle LIM-pro 37.6 16 0.00053 26.5 2.0 46 205-263 32-78 (101)
115 2jtn_A LIM domain-binding prot 37.5 23 0.00079 28.8 3.2 33 205-237 86-118 (182)
116 1rut_X Flinc4, fusion protein 35.1 13 0.00044 30.6 1.3 33 205-237 31-66 (188)
117 3a1b_A DNA (cytosine-5)-methyl 33.4 22 0.00075 28.8 2.3 53 205-260 78-134 (159)
118 2jmo_A Parkin; IBR, E3 ligase, 33.3 4.8 0.00017 28.6 -1.4 15 223-237 55-69 (80)
119 1l8d_A DNA double-strand break 32.3 97 0.0033 22.7 5.8 14 251-264 47-60 (112)
120 1wfl_A Zinc finger protein 216 31.3 47 0.0016 23.2 3.4 27 205-231 24-51 (74)
121 2lv9_A Histone-lysine N-methyl 30.4 35 0.0012 25.0 2.9 47 205-260 27-76 (98)
122 1zbd_B Rabphilin-3A; G protein 29.9 14 0.00047 29.1 0.6 48 205-259 54-106 (134)
123 1iml_A CRIP, cysteine rich int 29.8 37 0.0013 23.0 2.8 44 205-261 26-71 (76)
124 2k16_A Transcription initiatio 29.1 17 0.00057 25.1 0.8 51 204-261 16-69 (75)
125 3pwf_A Rubrerythrin; non heme 28.8 21 0.00072 29.1 1.5 13 205-217 137-149 (170)
126 1wil_A KIAA1045 protein; ring 28.4 88 0.003 22.5 4.5 55 203-258 12-74 (89)
127 2d8v_A Zinc finger FYVE domain 27.0 31 0.0011 23.5 1.8 32 205-237 7-39 (67)
128 1wen_A Inhibitor of growth fam 25.8 78 0.0027 21.6 3.8 49 204-262 14-67 (71)
129 1weu_A Inhibitor of growth fam 25.1 77 0.0026 22.9 3.9 49 203-261 33-86 (91)
130 3vhs_A ATPase wrnip1; zinc fin 24.7 42 0.0014 18.3 1.7 16 250-265 5-20 (29)
131 2zet_C Melanophilin; complex, 23.6 31 0.001 27.7 1.6 46 205-260 67-117 (153)
132 1f62_A Transcription factor WS 23.4 61 0.0021 20.2 2.8 46 208-260 2-50 (51)
133 1wff_A Riken cDNA 2810002D23 p 22.5 43 0.0015 24.1 2.0 27 205-231 24-52 (85)
134 1wg2_A Zinc finger (AN1-like) 22.2 66 0.0022 21.8 2.7 27 205-231 14-41 (64)
135 3c5k_A HD6, histone deacetylas 22.2 36 0.0012 25.6 1.6 26 206-231 24-49 (109)
136 3o36_A Transcription intermedi 21.9 29 0.001 28.3 1.2 47 206-261 4-52 (184)
137 2ku3_A Bromodomain-containing 21.8 69 0.0024 21.9 2.9 47 204-259 14-65 (71)
138 2ffw_A Midline-1; B-BOX, ring 21.2 55 0.0019 22.7 2.4 31 205-235 29-62 (78)
139 2jvx_A NF-kappa-B essential mo 21.1 22 0.00076 20.0 0.2 16 206-221 3-18 (28)
140 2l43_A N-teminal domain from h 20.9 70 0.0024 22.9 2.9 50 203-261 22-76 (88)
141 1mm2_A MI2-beta; PHD, zinc fin 20.3 36 0.0012 22.5 1.1 47 205-260 8-56 (61)
142 1lko_A Rubrerythrin all-iron(I 20.1 24 0.00081 29.3 0.2 12 206-217 155-166 (191)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.58 E-value=1.2e-15 Score=114.53 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=61.2
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
.+.+++.||||++++.+||+++|||+||+.||..|+. ....||.|+.++....+. .|..++++++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~~~~l~----pn~~L~~~i~ 74 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-----------NSPTDPFNRQMLTESMLE----PVPELKEQIQ 74 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCCGGGCE----ECHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-----------cCCCCCCCcCCCChHhcc----hHHHHHHHHH
Confidence 3567999999999999999999999999999999982 246899999999877655 8888999999
Q ss_pred HHHHHH
Q 044708 282 EYWEKR 287 (313)
Q Consensus 282 ~~~~~~ 287 (313)
.|....
T Consensus 75 ~~~~~~ 80 (85)
T 2kr4_A 75 AWMREK 80 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 886544
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=9.4e-16 Score=112.82 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=58.9
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
.+.+++.||||++++.+|++++|||+||+.||.+|+. .+...||.||.++...... .|..++++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~~~l~----~n~~l~~~i~ 69 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT----PNYVLKSLIA 69 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE----ECTTTHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCChhhCc----cCHHHHHHHH
Confidence 3567999999999999999999999999999999982 3467899999998876544 6777888888
Q ss_pred HHHH
Q 044708 282 EYWE 285 (313)
Q Consensus 282 ~~~~ 285 (313)
.|..
T Consensus 70 ~~~~ 73 (78)
T 1t1h_A 70 LWCE 73 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=113.02 Aligned_cols=74 Identities=23% Similarity=0.483 Sum_probs=60.2
Q ss_pred ccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc-chhhhhhhhhhHHHHH
Q 044708 201 IRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV-FMLFLQIYLINGCYIN 278 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~n~~l~~ 278 (313)
..+.+++.||||++++.+|++++ |||+||..||..|+.. .+...||.||.++. .... ..|..+.+
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~~~~----~~n~~l~~ 74 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSPDAL----IANKFLRQ 74 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH---------CTTCCCTTTCCSSCCTTSC----EECHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh---------cCCCcCcCCCCcCCCcccc----CcCHHHHH
Confidence 34668999999999999999999 9999999999999731 23579999999974 3333 37888999
Q ss_pred HHHHHHHHH
Q 044708 279 SCREYWEKR 287 (313)
Q Consensus 279 l~~~~~~~~ 287 (313)
+++.+....
T Consensus 75 ~i~~~~~~~ 83 (92)
T 3ztg_A 75 AVNNFKNET 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998886654
No 4
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.56 E-value=2.5e-15 Score=117.66 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=63.9
Q ss_pred cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.+.+++.|+||++.+.+|+++ +|||+||..||..|+ .....||.||..+...........|..+.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i 79 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-----------ETSKYCPICDVQVHKTRPLLNIRSDKTLQDIV 79 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-----------TSCSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH-----------HhCCcCcCCCccccccCcccccCcCHHHHHHH
Confidence 456899999999999999998 999999999999998 34589999999988764443445788888888
Q ss_pred HHHHHHHHhHH
Q 044708 281 REYWEKRLQIE 291 (313)
Q Consensus 281 ~~~~~~~~~~e 291 (313)
+.+.......+
T Consensus 80 ~~~~~~~~~~e 90 (108)
T 2ckl_A 80 YKLVPGLFKNE 90 (108)
T ss_dssp HHHSTTHHHHH
T ss_pred HHHhhhHHHHH
Confidence 88866444333
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.56 E-value=5.3e-15 Score=113.86 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=60.8
Q ss_pred cCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.+.+++.||||+++|.+||+++|| |+||+.||..|+ .....||.||.++....+. .|..+++++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I 82 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-----------LSDQTDPFNRSPLTMDQIR----PNTELKEKI 82 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-----------TTSCBCTTTCSBCCTTTSE----ECHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHH-----------HhCCCCCCCCCCCChhhce----EcHHHHHHH
Confidence 456899999999999999999999 999999999998 2356899999999877655 888899999
Q ss_pred HHHHHH
Q 044708 281 REYWEK 286 (313)
Q Consensus 281 ~~~~~~ 286 (313)
+.|...
T Consensus 83 ~~~~~~ 88 (98)
T 1wgm_A 83 QRWLAE 88 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888654
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.55 E-value=3.9e-15 Score=115.04 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=60.9
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
.+.+.+.||||++++.+||+++|||+||+.||..|+ .....||.|+.++....+. .|..++++++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I~ 89 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-----------LNSPTDPFNRQTLTESMLE----PVPELKEQIQ 89 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHT-----------TSCSBCSSSCCBCCTTSSE----ECHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHH-----------HcCCCCCCCCCCCChhhce----ECHHHHHHHH
Confidence 456899999999999999999999999999999998 3357899999999876655 8888999998
Q ss_pred HHHHH
Q 044708 282 EYWEK 286 (313)
Q Consensus 282 ~~~~~ 286 (313)
.|...
T Consensus 90 ~~~~~ 94 (100)
T 2kre_A 90 AWMRE 94 (100)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88654
No 7
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=7.3e-15 Score=113.10 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=62.2
Q ss_pred ccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708 201 IRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS 279 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 279 (313)
..+.+.+.|+||++.+.+|+++ +|||+||..|+..|+ .....||.||.++...+.. .|..+.++
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~l~----~n~~l~~~ 81 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-----------SYKTQCPTCCVTVTEPDLK----NNRILDEL 81 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHH-----------HCCCCCCCCCCcCChhhCC----cCHHHHHH
Confidence 3456789999999999999998 899999999999998 3457999999998875543 78899999
Q ss_pred HHHHHHHHHh
Q 044708 280 CREYWEKRLQ 289 (313)
Q Consensus 280 ~~~~~~~~~~ 289 (313)
++.+...+..
T Consensus 82 i~~~~~~~~~ 91 (99)
T 2y43_A 82 VKSLNFARNH 91 (99)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9988776543
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.50 E-value=1e-14 Score=119.23 Aligned_cols=66 Identities=24% Similarity=0.650 Sum_probs=51.0
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE 282 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 282 (313)
+++++||||++.+.+|++++|||+||..||..|+ .....||.||.++..... ...++..+..++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~--~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-----------KRKIECPICRKDIKSKTY--SLVLDNCINKMVNN 116 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT-----------TTCSBCTTTCCBCCCEEE--CHHHHHHHHHHHTT
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHH-----------HcCCcCCCCCCcCCCCCC--ccchhHHHHHHHHH
Confidence 3578999999999999999999999999999997 456789999999875431 12244445554443
No 9
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=116.16 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=57.1
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
.+.+++.||||++.+.+|++++|||+||..||..|+. .....||.||.++..... ...|..+.++++
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~---~~~n~~l~~~i~ 114 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGRSYA---MQVNQPLQTVLN 114 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCC---CCCCHHHHHHHH
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCCCCC---CCCCHHHHHHHH
Confidence 3457899999999999999999999999999999982 345689999999876321 237788888887
Q ss_pred HHH
Q 044708 282 EYW 284 (313)
Q Consensus 282 ~~~ 284 (313)
.+.
T Consensus 115 ~~~ 117 (124)
T 3fl2_A 115 QLF 117 (124)
T ss_dssp HHS
T ss_pred HHc
Confidence 764
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.47 E-value=6e-15 Score=113.98 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=55.6
Q ss_pred cccCCccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHH
Q 044708 200 SIRLDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYIN 278 (313)
Q Consensus 200 ~~~~~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~ 278 (313)
...+.+++.|+||++.+.+|++ ++|||+||..||..|+. .....||.||.++...+.. .+..+.+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~l~----~~~~~~~ 81 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT----------EQRAQCPHCRAPLQLRELV----NCRWAEE 81 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE----ECTTHHH
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHH----------HCcCCCCCCCCcCCHHHhH----hhHHHHH
Confidence 3456789999999999999999 89999999999999983 1227899999999876654 4455555
Q ss_pred HHHHH
Q 044708 279 SCREY 283 (313)
Q Consensus 279 l~~~~ 283 (313)
+++.+
T Consensus 82 i~~~~ 86 (100)
T 3lrq_A 82 VTQQL 86 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 11
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.46 E-value=2e-14 Score=113.67 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=58.3
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh---hhhhhhhhHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML---FLQIYLINGCYIN 278 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~n~~l~~ 278 (313)
...+++.|+||++.+.+|++++|||+||..||..|+ ......||.||..+.... ......+|..+.+
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~ 80 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTV----------EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT 80 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCC----------CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHH----------hHCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence 345789999999999999999999999999998876 134678999999987532 2223346777888
Q ss_pred HHHHHHHH
Q 044708 279 SCREYWEK 286 (313)
Q Consensus 279 l~~~~~~~ 286 (313)
++..+...
T Consensus 81 ~i~~~~p~ 88 (115)
T 3l11_A 81 IIQKHYPR 88 (115)
T ss_dssp HHHHHSHH
T ss_pred HHHHHCCH
Confidence 88777543
No 12
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=1.6e-14 Score=114.68 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=60.0
Q ss_pred cccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHH
Q 044708 200 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYIN 278 (313)
Q Consensus 200 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~ 278 (313)
...+.+.+.||||++++.+|+++ +|||+||..||..|+ . ..||.||.++...+.. .|..+.+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-----------~--~~CP~Cr~~~~~~~~~----~n~~l~~ 78 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-----------G--TGCPVCYTPAWIQDLK----INRQLDS 78 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-----------T--TBCSSSCCBCSCSSCC----CCHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-----------c--CCCcCCCCcCcccccc----ccHHHHH
Confidence 34567899999999999999999 999999999998886 2 6899999998765543 7888888
Q ss_pred HHHHHHHHHH
Q 044708 279 SCREYWEKRL 288 (313)
Q Consensus 279 l~~~~~~~~~ 288 (313)
+++.+...+.
T Consensus 79 l~~~~~~~~~ 88 (117)
T 1jm7_B 79 MIQLCSKLRN 88 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766544
No 13
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=9.7e-14 Score=105.95 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=59.0
Q ss_pred CccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCC-ccchhhhhhhhhhHHHHHH
Q 044708 204 DIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQA-SVFMLFLQIYLINGCYINS 279 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~~~~~~~~n~~l~~l 279 (313)
.+++.||||+++|.+||+++ |||+||+.||..|+... ........||+ |+.. +...++. .|..|+++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~-----~~~~~~~~CP~tgc~~~~l~~~~L~----pn~~L~~~ 75 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR-----QKRKKKAYCPQIGCSHTDIRKSDLI----QDEALRRA 75 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH-----HTTTCCBCCCSTTCCCCCBCGGGEE----ECHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc-----cCcCCCCCCCcCcCcccccCHhhCc----CCHHHHHH
Confidence 47899999999999999996 99999999999998321 01134678999 9877 7666654 78889999
Q ss_pred HHHHHHH
Q 044708 280 CREYWEK 286 (313)
Q Consensus 280 ~~~~~~~ 286 (313)
++.+...
T Consensus 76 I~~~~~~ 82 (94)
T 2yu4_A 76 IENHNKK 82 (94)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9888543
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=6.4e-15 Score=108.39 Aligned_cols=62 Identities=32% Similarity=0.787 Sum_probs=48.9
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
.+.+++.|+||++.+.+|++++|||+||..|+..|+.. ..........||.||.++...+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~----~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKE----AVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCC----CSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHh----cccCCCCCCcCCCCCCcCCHhhCC
Confidence 45688999999999999999999999999999888621 111113467999999998876543
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.42 E-value=7.2e-14 Score=115.80 Aligned_cols=69 Identities=26% Similarity=0.500 Sum_probs=57.5
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE 282 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 282 (313)
+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||+||.++.... ....|..+.++++.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~---~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK----------AQVFSCPACRHDLGQNY---IMIPNEILQTLLDL 141 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTC---CCCBCHHHHHHHHH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH----------hCCCcCCCCCccCCCCC---CCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999982 34568999999988762 12478888888887
Q ss_pred HH
Q 044708 283 YW 284 (313)
Q Consensus 283 ~~ 284 (313)
+.
T Consensus 142 ~~ 143 (150)
T 1z6u_A 142 FF 143 (150)
T ss_dssp HS
T ss_pred Hh
Confidence 64
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.3e-14 Score=107.92 Aligned_cols=61 Identities=33% Similarity=0.740 Sum_probs=49.4
Q ss_pred ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
..+.+++.|+||++.+.+|+.++|||+||..|+..|+... ........||.||.++.....
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHS-----BCTTSCBCCTTTCCCCCTTCC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhc-----cCCCCCCCCCCCCCcCCHHhC
Confidence 4467889999999999999999999999999999998321 112346899999999876553
No 17
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.41 E-value=1.7e-13 Score=116.22 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=59.2
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE 282 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 282 (313)
+.+.+.||||+++|.+||+++|||+||+.||..|+. ..+..||.|+.++....++ .|..++++++.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~----------~~~~tcP~t~~~l~~~~L~----pN~~Lk~~Ie~ 168 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFDPVTRSPLTQDQLI----PNLAMKEVIDA 168 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE----ECHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHH----------hCCCCCCCCcCCCChhhCc----chHHHHHHHHH
Confidence 457899999999999999999999999999999983 1123799999999877655 88889999988
Q ss_pred HHHH
Q 044708 283 YWEK 286 (313)
Q Consensus 283 ~~~~ 286 (313)
+...
T Consensus 169 ~~~~ 172 (179)
T 2f42_A 169 FIQE 172 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=98.56 Aligned_cols=57 Identities=32% Similarity=0.720 Sum_probs=47.6
Q ss_pred ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..+.+++.|+||++.+.+|++++|||+||..|+..|+. .......||.||.++...+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCccc
Confidence 34668899999999999999999999999999999861 1135678999999987543
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=99.87 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=48.0
Q ss_pred cccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 200 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 200 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
...+++++.|+||++.+.+|+++ +|||+||..||..|+ .....||+||.++...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF-----------YYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH-----------HHCSSCTTTCCCCCSSCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH-----------HcCCcCCCcCcccCcccc
Confidence 34567889999999999999997 999999999999998 225789999999887654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=100.64 Aligned_cols=56 Identities=29% Similarity=0.571 Sum_probs=46.8
Q ss_pred ccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 201 IRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..+.+++.|+||++.+.+|++++ |||+||..||..|+.. .....||+||.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcCCCcc
Confidence 35668899999999999999999 9999999999999831 23478999999865544
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=96.87 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=46.6
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .....||.||.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCChhh
Confidence 4567899999999999999999999999999999971 34678999999987554
No 22
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=1.8e-13 Score=123.86 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=58.5
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE 282 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 282 (313)
+.+.+.||||++++.+||+++|||+||+.||.+|+. .+...||+||.+++....+ .|..++++++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~----------~~~~~cP~~~~~~~~~~l~----~n~~l~~~i~~ 270 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLI----PNLAMKEVIDA 270 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCE----ECHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHH----------HCCCCCcCCCCCCchhcCc----ccHHHHHHHHH
Confidence 457899999999999999999999999999999983 2233499999999876655 78889999988
Q ss_pred HHH
Q 044708 283 YWE 285 (313)
Q Consensus 283 ~~~ 285 (313)
|..
T Consensus 271 ~~~ 273 (281)
T 2c2l_A 271 FIS 273 (281)
T ss_dssp HHT
T ss_pred HHH
Confidence 754
No 23
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.8e-13 Score=97.05 Aligned_cols=52 Identities=35% Similarity=0.701 Sum_probs=45.5
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..+++.|+||++.+.+|+.++|||+||..||..|+ .....||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCHhh
Confidence 44678999999999999999999999999999987 34579999999987654
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3e-14 Score=105.95 Aligned_cols=61 Identities=34% Similarity=0.792 Sum_probs=49.1
Q ss_pred ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .......||.||..+...+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-----LDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-----HTTSCCCCTTTCCSSCSSSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-----cCCCCCcCCCCCCccCHHhc
Confidence 34667899999999999999999999999999999973211 01346799999999886553
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.2e-13 Score=99.33 Aligned_cols=50 Identities=26% Similarity=0.672 Sum_probs=44.2
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
...+.+.|+||++.+.+|++++|||+||..|+..|+ .....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF-----------RATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH-----------HHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH-----------HCCCcCCCcCcccc
Confidence 345688999999999999999999999999999997 23568999999986
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=2.3e-13 Score=106.69 Aligned_cols=58 Identities=33% Similarity=0.756 Sum_probs=48.1
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
.+.+.+.|+||++.+.+|++++|||+||..|+..|+.. ..+...||.||.++......
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCB
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHh--------CCCCCCCcCCCCcCCHhhcC
Confidence 34568899999999999999999999999999999731 12346899999998876654
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.3e-13 Score=92.87 Aligned_cols=49 Identities=37% Similarity=0.886 Sum_probs=41.6
Q ss_pred ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
..+++++.|+||++.+.+|++++|||+||..||.+|+.. ......||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH--------CSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc--------CCCCCcCcCC
Confidence 346788999999999999999999999999999999821 1346789998
No 28
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.33 E-value=5.2e-13 Score=112.21 Aligned_cols=72 Identities=24% Similarity=0.506 Sum_probs=57.1
Q ss_pred cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.+.+.+.||||++.+.+|+++ +|||+||..||..|+. .....||.||.++...+. ...|..+.+++
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~---l~~~~~l~~~i 116 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----------SGNKECPTCRKKLVSKRS---LRPDPNFDALI 116 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCCSGGG---EEECHHHHHHH
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----------hCcCCCCCCCCcCCCccc---CCcCHHHHHHH
Confidence 456788999999999999997 9999999999999982 336789999999865432 24677788888
Q ss_pred HHHHHH
Q 044708 281 REYWEK 286 (313)
Q Consensus 281 ~~~~~~ 286 (313)
..+...
T Consensus 117 ~~~~~~ 122 (165)
T 2ckl_B 117 SKIYPS 122 (165)
T ss_dssp HHHC--
T ss_pred HHHHcc
Confidence 877554
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.30 E-value=7.7e-13 Score=105.06 Aligned_cols=55 Identities=29% Similarity=0.687 Sum_probs=47.1
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
.+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||.||.++.....
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh----------hCCCCCCCCCCCcCHHhc
Confidence 4678899999999999999999999999999999973 123489999999887654
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=97.58 Aligned_cols=57 Identities=28% Similarity=0.702 Sum_probs=47.5
Q ss_pred ccCCccCccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 201 IRLDIELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
..+.+.+.|+||++.+.+ |+.++|||+||..|+..|+.. ......||.||.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccchh
Confidence 346678999999999999 999999999999999999731 123579999999987654
No 31
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.4e-12 Score=113.42 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=59.6
Q ss_pred cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCCccchhhhhhhhhhHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQASVFMLFLQIYLINGCYIN 278 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~n~~l~~ 278 (313)
....+++||||+++|.+||+. .|||+||+.||..||. ..+...||+ |+..+...++. .|..+.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~---------~~~~~~CPvtGCr~~l~~~dL~----pN~~L~~ 243 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ---------GYTTRDCPQAACSQVVSMRDFV----RDPIMEL 243 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST---------TCSCEECSGGGCSCEECGGGEE----ECHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH---------hCCCCCCCcccccCcCchhhCC----cCHHHHH
Confidence 346789999999999999985 8999999999999972 124578999 99998877765 7888999
Q ss_pred HHHHHHHH
Q 044708 279 SCREYWEK 286 (313)
Q Consensus 279 l~~~~~~~ 286 (313)
+++.+...
T Consensus 244 lve~~k~r 251 (267)
T 3htk_C 244 RCKIAKMK 251 (267)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877443
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=88.12 Aligned_cols=48 Identities=38% Similarity=0.877 Sum_probs=40.6
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
.+.+.+.|+||++.+.+|+.++|||+||..||.+|+. . ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~---~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE-----D---LERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT-----S---SCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH-----h---cCCCCCCCCC
Confidence 4567899999999999999999999999999999962 0 1356789998
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=7.8e-13 Score=95.07 Aligned_cols=53 Identities=26% Similarity=0.731 Sum_probs=45.1
Q ss_pred CCccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 203 LDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
..+++.|+||++.+.+| +.++|||+||..|+.+|+ .....||.||.++...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH-----------HcCCCCCCCCCccChhhe
Confidence 34688999999999988 889999999999999998 234689999999876553
No 34
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=93.15 Aligned_cols=51 Identities=29% Similarity=0.780 Sum_probs=43.6
Q ss_pred cCCccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 202 RLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.+.+...|+||++.+.+| +.++|||.||..||..|+ .....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH-----------HHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH-----------HcCCCCCCCCCccCc
Confidence 345788999999999988 889999999999999997 235689999998753
No 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=1.2e-12 Score=103.59 Aligned_cols=55 Identities=24% Similarity=0.632 Sum_probs=47.1
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
.+.+++.||||++.+.+|++++|||+||..||.+|+. .....||.||.++...+.
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh----------HCcCcCCCCCCCCCHhhc
Confidence 3557899999999999999999999999999999983 225689999999887653
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.4e-12 Score=91.15 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=43.3
Q ss_pred ccCccccccc-cccCc----eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLE-TVFDP----VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~-~~~~P----v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+++.||||++ .+.+| +.++|||+||..|+.+|+. .+...||.||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----------cCCCcCCCCCCcccccc
Confidence 4788999999 99999 5689999999999999962 34578999999987655
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.25 E-value=8.6e-13 Score=108.16 Aligned_cols=53 Identities=25% Similarity=0.715 Sum_probs=45.6
Q ss_pred ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
..+++.+.||||++++.+|++++|||+||..||..|+. .....||.||.++..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS----------SGPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh----------cCCCCCCCCCCcccc
Confidence 35678999999999999999999999999999999972 334689999997643
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.23 E-value=6.1e-12 Score=92.52 Aligned_cols=54 Identities=26% Similarity=0.600 Sum_probs=43.4
Q ss_pred cCCccCcccccccccc--CceEcc--cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 202 RLDIELTCPVCLETVF--DPVSLT--CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~--~Pv~l~--CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.++++++||||++.+. +++.+| |||+||..|+..++. .....||.||.++....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~----------~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT----------SSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh----------cCCCCCCCCCCccCCCc
Confidence 4568899999999874 556655 999999999988862 34679999999987654
No 39
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=3.6e-12 Score=87.66 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=41.4
Q ss_pred CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+.+.|+||++.+.+|++++|||+||..|+.. ....||.||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEeecCC
Confidence 46789999999999999999999999999832 3568999999987544
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=4e-12 Score=89.24 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=43.2
Q ss_pred ccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+++.|+||++.+.+| +.++|||.||..|+.+|+ .....||.||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH-----------HcCCCCCCCCccCCccc
Confidence 567899999999887 788999999999999997 23568999999987655
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.18 E-value=1.4e-11 Score=83.98 Aligned_cols=49 Identities=35% Similarity=0.678 Sum_probs=41.7
Q ss_pred CCccCccccccccccC---ceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 203 LDIELTCPVCLETVFD---PVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~---Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
++++..|+||++.+.+ ++.++ |||.||..|+.+|+ .....||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence 3567899999999987 78887 99999999999997 44568999998764
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5.1e-12 Score=90.64 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=45.0
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+.+...|+||++.+.+ +.++|||.||..|+..|+ .....||.||.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCCC
Confidence 45678899999999999 889999999999999986 45789999999887544
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.2e-11 Score=90.55 Aligned_cols=53 Identities=26% Similarity=0.590 Sum_probs=44.0
Q ss_pred cCCccCccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 202 RLDIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
...++..|+||++.+.+| +.++|||.||..||.+|+ .....||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL-----------EQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH-----------TTTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH-----------HcCCcCcCcCCccCCcc
Confidence 345788999999999866 456999999999999998 34568999999987655
No 44
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.17 E-value=9e-12 Score=105.05 Aligned_cols=56 Identities=29% Similarity=0.687 Sum_probs=47.8
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
.+++.+.||||++++.+|++++|||+||..|+..|+. .....||.||.++...+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQLF 69 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH----------hCCCCCCCCccCcchhhhh
Confidence 5678999999999999999999999999999999973 1234899999998876543
No 45
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=87.69 Aligned_cols=51 Identities=29% Similarity=0.598 Sum_probs=41.1
Q ss_pred CCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 203 LDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
...+..|+||++.+. .++.++|||.||..||..|+. ....||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-----------TNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-----------cCCCCcCcCccccCc
Confidence 446788999999874 457789999999999999982 234699999987643
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1.4e-11 Score=87.83 Aligned_cols=48 Identities=29% Similarity=0.718 Sum_probs=41.2
Q ss_pred ccCccccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
++..|+||++.+.+| +.++|||+||..|+.+|+ .....||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWI-----------RQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH-----------HHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHH-----------hCcCcCcCCChhhHh
Confidence 567899999999997 678999999999999997 234689999998763
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.12 E-value=2e-11 Score=83.18 Aligned_cols=47 Identities=34% Similarity=0.766 Sum_probs=39.8
Q ss_pred ccCccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 205 IELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 205 ~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
++..|+||++.+.+ ++.++|||.||..|+.+|+. ....||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-----------EGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-----------HTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-----------cCCcCCCCCCcCC
Confidence 46789999999866 77889999999999999982 2378999998864
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=90.99 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=42.5
Q ss_pred CCccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 203 LDIELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
..++..|+||++.+.+ ++.++|||.||..||..|+ .....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl-----------~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL-----------QKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH-----------TTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH-----------HcCCcCcCcCccCCC
Confidence 4567899999998887 7789999999999999998 345689999998753
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=88.26 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=42.1
Q ss_pred CCccCccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 203 LDIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
..++..|+||++.+.++ +.++|||.||..||..|+ .....||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~-----------~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-----------KANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH-----------HHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH-----------HcCCcCcCcCCcCCC
Confidence 44678999999999887 678999999999999997 224589999998764
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.2e-11 Score=87.40 Aligned_cols=51 Identities=29% Similarity=0.613 Sum_probs=42.0
Q ss_pred cCCccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 202 RLDIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.+.++..|+||++.+.++..+ +|||.||..||..|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-----------VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-----------HCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-----------cCCcCCCcCccccc
Confidence 456788999999999877544 9999999999999982 23489999998764
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=5.7e-11 Score=95.36 Aligned_cols=51 Identities=27% Similarity=0.741 Sum_probs=44.7
Q ss_pred CccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 204 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
.+++.|+||++.+.+| +.++|||+||..||.+|+ .....||.||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHH-----------TTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHH-----------HhCCCCCCCCCcCcccc
Confidence 3678999999999999 889999999999999998 44569999999987655
No 52
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4e-11 Score=87.37 Aligned_cols=48 Identities=38% Similarity=0.881 Sum_probs=41.0
Q ss_pred cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+.++..|+||++.+.+|+.+||||. ||..|+.. ...||.||.++...
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---------------CCCCccCCceecCc
Confidence 34577899999999999999999999 99999942 25899999987653
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.01 E-value=1.1e-10 Score=84.76 Aligned_cols=48 Identities=38% Similarity=0.896 Sum_probs=41.3
Q ss_pred cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+.+++.|+||++.+.+|+.+||||. ||..|+..| ..||.||.++...
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCc
Confidence 45578899999999999999999999 999998432 6899999988654
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.95 E-value=3.5e-10 Score=88.81 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=41.9
Q ss_pred ccCccccccccccCce------------------EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVFDPV------------------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv------------------~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+..|+||++.|.+|+ .++|||.||..||..|+... . ......||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~--~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----N--KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----C--CSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----c--CCCCCcCCCCCCccCCC
Confidence 4568999999997765 67999999999999997211 0 13457899999987644
No 55
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=7.1e-10 Score=84.20 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=43.7
Q ss_pred ccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCC--ccchh
Q 044708 205 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQA--SVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~--~~~~~ 265 (313)
+.++|+||++.+..|+++ +|||.||..|+..++......+ ......||. |+.. +....
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCCEECHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCCccCHHH
Confidence 477899999999988764 6999999999999985332221 124578999 9998 55443
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.93 E-value=4.2e-10 Score=79.40 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=41.9
Q ss_pred CccCccccccccccCceEc--ccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 204 DIELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.++..|+||++...+++.+ ||||. ||..|+..++ .....||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK-----------KRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH-----------HTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH-----------HcCCcCCCcCcchhc
Confidence 3677899999999999987 99999 8999999886 235689999998753
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.3e-10 Score=81.29 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=39.7
Q ss_pred ccCccccccccccC--------------ceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVFD--------------PVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~~--------------Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
++..|+||++.+.+ ++.++ |||.|+..||.+|+ .....||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-----------KQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-----------TTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-----------HhCCCCCCcCCCcchh
Confidence 46679999998876 45554 99999999999997 3456999999987654
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=7.1e-10 Score=104.37 Aligned_cols=51 Identities=27% Similarity=0.538 Sum_probs=44.1
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
....|+||++.+.+|+.+||||.||..|+..|.. .....||.||.++....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~----------~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH----------HTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh----------cCCCCCCCCCCccCCce
Confidence 3479999999999999999999999999999872 14678999999987655
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=1.1e-09 Score=76.90 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=40.9
Q ss_pred ccCccccccccccCceEc--ccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
....|+||++...+++.+ ||||. ||..|+..++ .....||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK-----------KAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH-----------HTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH-----------HhCCcCCCcCchhhc
Confidence 456799999999999887 99998 9999999886 234789999998753
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.83 E-value=1.1e-09 Score=80.46 Aligned_cols=47 Identities=32% Similarity=0.784 Sum_probs=40.5
Q ss_pred CCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+.++..|+||++.+.+|+.+||||. ||..|+..+ ..||.||.++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCe
Confidence 4567899999999999999999999 999999432 3899999998754
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=1.6e-09 Score=86.86 Aligned_cols=52 Identities=27% Similarity=0.759 Sum_probs=44.8
Q ss_pred CccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 204 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
.+...|+||++.+.+| +.++|||+||..|+.+|+ .....||+||.++...+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH-----------HHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH-----------HcCCCCCCCCCcCChhcc
Confidence 4678899999999887 888999999999999998 335699999999887653
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.77 E-value=1.3e-09 Score=76.03 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
.+.||||++++.+||.+ +|||+||+.||.+|+. ....||+++.++...+++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-----------~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-----------hCCCCcCCcCCCChhhcE
Confidence 57899999999999999 8999999999999982 123599999998877654
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=75.93 Aligned_cols=46 Identities=33% Similarity=0.649 Sum_probs=39.6
Q ss_pred CccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 204 DIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+...|+||++...+++.+||||. ||..|+.. ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---------------CCCCCCCCcchhce
Confidence 357889999999999999999999 99999953 35899999987653
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.72 E-value=8.4e-09 Score=80.09 Aligned_cols=48 Identities=23% Similarity=0.485 Sum_probs=40.0
Q ss_pred ccCccccccccccCc------------------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDP------------------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
++..|+||++.+.++ +.++|||.|+..||..|+ .....||+||.+...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-----------HcCCcCcCCCCccee
Confidence 456899999998866 346899999999999998 456789999998654
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=6.7e-09 Score=96.91 Aligned_cols=48 Identities=42% Similarity=0.865 Sum_probs=41.6
Q ss_pred cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.+.+++.|+||++.+.+|+.+||||. ||..|+..+ ..||.||.++...
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGT 339 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCe
Confidence 45678999999999999999999999 999998432 5899999988643
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.40 E-value=3.6e-08 Score=77.70 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=0.5
Q ss_pred cCccccccccccCc-----------------eE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDP-----------------VS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~P-----------------v~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+-.|+||++.+.+| +. ++|+|.|+..||.+|+ .....||+||.+...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-----------~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF 112 (117)
T ss_dssp C---------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-----------HcCCcCCCCCCeeee
Confidence 45899999998764 22 4899999999999997 446789999998643
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=63.90 Aligned_cols=52 Identities=17% Similarity=0.384 Sum_probs=41.4
Q ss_pred ccCccccccccc--cCceEcccC-----CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETV--FDPVSLTCG-----HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~--~~Pv~l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
++..|+||++.+ .+++.+||. |.|...||.+|+.. .....||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeeecCc
Confidence 567899999876 468888996 99999999999831 23468999999987543
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.8e-05 Score=58.63 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=36.6
Q ss_pred ccccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 208 TCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 208 ~C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
.|++|.-.+..- .++||.|.||..|+..|.. .....||.|+.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~----------~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK----------KGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh----------ccCCCCcCcCCeeeee
Confidence 488898766543 4579999999999988862 4567899999987643
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.00024 Score=51.04 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=38.9
Q ss_pred ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
....|.||.+.+..-..- .|+|.|=..||.+|+. ......||.||.+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~---------~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST---------TCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH---------hcCCCCCCCCcCcCCCC
Confidence 346799999998754443 7999999999999972 12237899999886643
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.20 E-value=0.0002 Score=65.92 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=40.6
Q ss_pred CccCccccccccccC----ceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 204 DIELTCPVCLETVFD----PVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~----Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+....|+||...+.+ |.. .+|||.|-..|+.+|+.........-......||.||.+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 356789999998776 322 3699999999999998422110000011235799999988743
No 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.15 E-value=0.00038 Score=72.00 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=63.4
Q ss_pred ccCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708 201 IRLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS 279 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 279 (313)
..+.+++.|||-.+++.|||++|.| ++|-+.+|.+|+ .....||.=|.++.....+ .|..++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl-----------~~~~tdP~Tr~~L~~~~li----PN~~Lk~~ 950 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-----------LSDSTDPFNRMPLKLEDVT----PNEELRQK 950 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHH-----------hcCCCCCCCCCCCCccccc----ccHHHHHH
Confidence 4567899999999999999999998 699999999998 3356899999999877765 88999999
Q ss_pred HHHHHHHHHh
Q 044708 280 CREYWEKRLQ 289 (313)
Q Consensus 280 ~~~~~~~~~~ 289 (313)
++.|..+...
T Consensus 951 I~~w~~~~~~ 960 (968)
T 3m62_A 951 ILCFKKQKKE 960 (968)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9998776553
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.09 E-value=0.00039 Score=47.81 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=38.8
Q ss_pred ccCccccccccccCceEcccC--C---cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDPVSLTCG--H---ILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~Cg--H---~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+...|.||++...+|..+||. + .|=..|+.+|+.. ++...||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeeec
Confidence 566899999887788878865 3 6888999999831 235789999988753
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.81 E-value=0.0005 Score=52.09 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=27.9
Q ss_pred ccCcccccccc-ccCceE--cccCCcchHHHHHHh
Q 044708 205 IELTCPVCLET-VFDPVS--LTCGHILCKMCACSA 236 (313)
Q Consensus 205 ~~l~C~IC~~~-~~~Pv~--l~CgH~FC~~Cl~~~ 236 (313)
+++.|+||.+. +.+|+. ++|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 56899999965 788888 899999999999873
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.25 E-value=0.12 Score=45.33 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=38.3
Q ss_pred cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
-..|.||.+++..-+.- .|+|.|=..|+..|+. ......||.|+.+-+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~---------~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT---------TCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHH---------hCCCCCCCCCCCCCCCC
Confidence 45799999998865544 4999999999999872 13457999999875543
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.69 E-value=0.33 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=28.2
Q ss_pred ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708 205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS 238 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~ 238 (313)
..+.|.+|.+-+.+.....| +|.||..|-...+.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 57889999999998766544 69999999988874
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.39 Score=44.57 Aligned_cols=64 Identities=20% Similarity=0.421 Sum_probs=45.0
Q ss_pred ccCccccccccccCceEc-ccCCcchHHH--HHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 205 IELTCPVCLETVFDPVSL-TCGHILCKMC--ACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~C--l~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
-.+.||+-...+..|+.- .|.|.-|..- +.... .......||+|.+.+...++. ++..+..++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~---------~~~~~W~CPIC~k~~~~~dL~----ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQ---------LQIPTWQCPVCQIDIALENLA----ISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHH---------HHSCCCBCTTTCCBCCGGGEE----EBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHh---------hcCCceeCCCCCcccCHHHee----EcHHHHHHHH
Confidence 468999999999999975 7999955443 22221 125678999999998887755 5555554443
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.24 E-value=0.54 Score=43.47 Aligned_cols=64 Identities=20% Similarity=0.501 Sum_probs=44.7
Q ss_pred CccCccccccccccCceEc-ccCCcchHH--HHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 204 DIELTCPVCLETVFDPVSL-TCGHILCKM--CACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~--Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.-.+.||+-...+..|+.- .|.|.-|-. -+.... .......||+|.+.+...++. ++..+..++
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~---------~~~~~W~CPiC~k~~~~~dL~----ID~~~~~IL 279 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMN---------EKKPTWICPVCDKKAAYESLI----LDGLFMEIL 279 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHH---------HHSCCCBCTTTCSBCCGGGEE----EBHHHHHHH
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHH---------hhCCCeECCCCCcccCHHHeE----EcHHHHHHH
Confidence 3578999999999999974 799995543 222221 125678999999998887754 455454444
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.42 E-value=0.83 Score=33.74 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 203 LDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
+-.-+.|..|--... -.+.|. |-+|..|+...+ +.+..||+|..+++.+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL-----------~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLL-----------SVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTC-----------SSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHH-----------hhccCCcccCCcCCcc
Confidence 345567988875444 345665 889999998876 6678999999887644
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.75 E-value=2.1 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=34.5
Q ss_pred cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.-.|.||.+.+- ++... .|+-..|+.|..--. ..+...||.|...+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----------keG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----------REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----------HTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----------hccCccccccCCcccc
Confidence 457999998743 23222 588889999985443 2667899999988753
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.14 E-value=4.4 Score=32.31 Aligned_cols=54 Identities=17% Similarity=0.358 Sum_probs=33.7
Q ss_pred ccCccccccccccCceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+..|.+|.+-=. +. -.|-.+||..|+...+................||.|+..
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3567999986322 22 269999999999876532111111113668899999753
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=72.39 E-value=0.42 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.7
Q ss_pred ccCccccccccccCceE
Q 044708 205 IELTCPVCLETVFDPVS 221 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~ 221 (313)
+.++||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 56899999998887643
No 82
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.01 E-value=3.7 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=21.2
Q ss_pred cCccccccccccCce---E-cccCCcchHHHHH
Q 044708 206 ELTCPVCLETVFDPV---S-LTCGHILCKMCAC 234 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~ 234 (313)
+-.|.+|...|.--. . -.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 347999998765321 1 3699999999974
No 83
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=60.45 E-value=0.72 Score=34.25 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=27.8
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+..||+|...+.. .=++.+|..|-..+ .....||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f------------~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFI------------EMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEE------------EEEEECTTTCSBCEE
T ss_pred cccCccCCCccee----cCCEEECccccchh------------hccccCcchhhHHHH
Confidence 3889999976542 12344588885332 345689999988763
No 84
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.83 E-value=3.3 Score=32.24 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=21.7
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~ 234 (313)
+...|.+|...|.--. . -.||+.||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3457999998775321 1 3699999999974
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.51 E-value=6.1 Score=30.95 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=32.5
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
+..|.||.+-=.-..--.|-..||..|+.+.+................|+.|+.
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 445999986322111126899999999987642221111111367889999954
No 86
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.88 E-value=4.7 Score=28.74 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=22.3
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~~ 235 (313)
+...|.+|...|.--. . -.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4457999998776321 1 36999999999743
No 87
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.96 E-value=3.7 Score=30.95 Aligned_cols=30 Identities=17% Similarity=0.497 Sum_probs=19.3
Q ss_pred cCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 217 FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 217 ~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
..|.-..||+.|+. . ...+..||.|+..-.
T Consensus 66 ~p~~C~~CG~~F~~-----~-----------~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA-----E-----------INIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCCC-----C-----------SSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeecc-----c-----------CCCCCCCcCCCCCcc
Confidence 34445678888821 1 155689999987644
No 88
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=54.83 E-value=5 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=22.2
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~ 234 (313)
+...|.+|...|.--. . -.||+.||..|..
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4567999998765321 1 3699999999974
No 89
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=53.93 E-value=9.4 Score=29.02 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.7
Q ss_pred ccCccccccccccC-ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+-+.|..|...+.. +....=|..||..|..+.+ ...|+.|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-------------~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-------------AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-------------CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-------------CccCcccCCcCCc
Confidence 45899999988875 3445678899999986643 3567777777663
No 90
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=53.28 E-value=9.4 Score=29.05 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=37.1
Q ss_pred ccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+-+.|..|...|.+ .....=|..||..|..+.+ .....|..|..++....
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f-----------~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-----------GNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH-----------CCCCSSSCSSCCSCCEE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc-----------CCCCccccCCCCcCchh
Confidence 35889999998863 3445678899999997766 22337999998887544
No 91
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.23 E-value=5.2 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=21.7
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~ 234 (313)
+...|.+|...|.--. . -.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4467999998775221 1 3699999999964
No 92
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.07 E-value=6.7 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=22.1
Q ss_pred ccCccccccccccCc---eE-cccCCcchHHHHHH
Q 044708 205 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P---v~-l~CgH~FC~~Cl~~ 235 (313)
+...|.+|...|.-- .. ..||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 456799999876521 11 36999999999743
No 93
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.81 E-value=5.3 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=19.4
Q ss_pred ccccccccc-----CceEcc-cCCcchHHHHHHh
Q 044708 209 CPVCLETVF-----DPVSLT-CGHILCKMCACSA 236 (313)
Q Consensus 209 C~IC~~~~~-----~Pv~l~-CgH~FC~~Cl~~~ 236 (313)
||-|...+. .++.-+ |++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 887776442 234445 9999999997555
No 94
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.69 E-value=14 Score=24.78 Aligned_cols=40 Identities=25% Similarity=0.579 Sum_probs=28.1
Q ss_pred CccccccccccCceE---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 207 LTCPVCLETVFDPVS---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
..|-.|+..+.++.. ..|++.||..|=.=. ...-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fi-----------He~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV-----------HDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTT-----------TTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHH-----------HhhccCCcCC
Confidence 358889888866542 359999999995222 1455689988
No 95
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.65 E-value=5 Score=34.17 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=22.8
Q ss_pred CccCccccccccccCc---eE-cccCCcchHHHHHH
Q 044708 204 DIELTCPVCLETVFDP---VS-LTCGHILCKMCACS 235 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P---v~-l~CgH~FC~~Cl~~ 235 (313)
.++..|++|...|.-- .. -.||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3457899999876521 11 36999999999743
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=49.96 E-value=4.6 Score=31.21 Aligned_cols=30 Identities=23% Similarity=0.656 Sum_probs=21.1
Q ss_pred ccCccccccccccCce----EcccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDPV----SLTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~ 234 (313)
+...|..|...|.--. --.||..||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhC
Confidence 4567999998775321 13799999999963
No 97
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=48.37 E-value=21 Score=24.29 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=31.4
Q ss_pred ccCccccccccccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 205 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
....|.||.+- .-+.+ .|...|-..|+...+ . ....+...||.|....
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l-----~--~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAG-----T--SRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTT-----C--CCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCcc-----C--cCCCCCEECccccCCC
Confidence 35569999863 22333 598999999985443 1 1124668999997643
No 98
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.34 E-value=7.1 Score=29.00 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.4
Q ss_pred cchHHHHHHhhh
Q 044708 227 ILCKMCACSAAS 238 (313)
Q Consensus 227 ~FC~~Cl~~~~~ 238 (313)
.||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999983
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.29 E-value=6.2 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=22.0
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~~ 235 (313)
+...|.+|...|.--. . -.||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4457999998765321 1 36999999999743
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.13 E-value=2.9 Score=37.88 Aligned_cols=46 Identities=26% Similarity=0.625 Sum_probs=25.9
Q ss_pred CccCccccccccccCceEc----ccC--CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 204 DIELTCPVCLETVFDPVSL----TCG--HILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l----~Cg--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
...-.||+|.....--+.. .=| +-+|..|-.+|. .....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-----------~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-----------YVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE-----------CCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-----------ecCcCCcCCCCC
Confidence 3466788888754433322 123 356777766663 345567766553
No 101
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=46.08 E-value=20 Score=23.79 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=31.0
Q ss_pred CccCccccccccccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 204 DIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
..+..|.+|... .-+.+ .|...|-..|+...+ .....+...||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l-------~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDM-------EKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTC-------CSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCC-------CCCCCCceECccccc
Confidence 356789999873 23333 588888899985432 112356789999965
No 102
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.08 E-value=7.2 Score=28.91 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.4
Q ss_pred cchHHHHHHhhh
Q 044708 227 ILCKMCACSAAS 238 (313)
Q Consensus 227 ~FC~~Cl~~~~~ 238 (313)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999983
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.59 E-value=8.2 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=22.2
Q ss_pred ccCccccccccccCce----EcccCCcchHHHHHH
Q 044708 205 IELTCPVCLETVFDPV----SLTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~ 235 (313)
++-.|.+|...|.--. -..||+.||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3458999998765221 136999999999743
No 104
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.88 E-value=4.8 Score=37.61 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=0.0
Q ss_pred ccCccccccccccCce----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPV----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+...|.+|...|.--. -..||+.||..|.......+ .........|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~----~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLK----YLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCC----CCCCCcCEecHHHHHH
Confidence 3567999998765221 13699999999986543110 0011234567777543
No 105
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.32 E-value=10 Score=38.64 Aligned_cols=57 Identities=23% Similarity=0.584 Sum_probs=40.2
Q ss_pred ccCccccccccccCce----------EcccCCcc--------------------hHHHHHHhhhhhhhccccCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPREKC 254 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 254 (313)
+--+|+-|+.-+.||- -+.||..| |..|..++.++. ..+-...+..|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~---dRRfhAqp~aC 181 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPL---NRRYHAEPTAC 181 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSS---STTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCC---CCCCcCCCCCC
Confidence 5678999998888772 14688777 999999886321 12223567899
Q ss_pred CCCcCCccch
Q 044708 255 PLCRQASVFM 264 (313)
Q Consensus 255 P~Cr~~~~~~ 264 (313)
|.|.-.+...
T Consensus 182 ~~CGP~l~l~ 191 (772)
T 4g9i_A 182 PVCGPSYRLY 191 (772)
T ss_dssp TTTSCCEEEE
T ss_pred ccCCceEEEE
Confidence 9998776543
No 106
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.07 E-value=11 Score=37.75 Aligned_cols=54 Identities=24% Similarity=0.513 Sum_probs=38.1
Q ss_pred ccCccccccccccCce----------EcccCCcc--------------------hHHHHHHhhhhhhhccccCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPREKC 254 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 254 (313)
+--+|+-|+.-+.||- -+.||..| |..|..++-+.. ..+-...+..|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~---dRRfHAqp~aC 92 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPL---DRRFHAQPVAC 92 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTT---STTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCC---CCcCcCCCCcC
Confidence 5678999988777762 14677777 999999986321 12223567899
Q ss_pred CCCcCCc
Q 044708 255 PLCRQAS 261 (313)
Q Consensus 255 P~Cr~~~ 261 (313)
|.|.-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9998776
No 107
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.67 E-value=2.5 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=20.5
Q ss_pred CccccccccccCc-----eEcc---cCCcchHHHHHHh
Q 044708 207 LTCPVCLETVFDP-----VSLT---CGHILCKMCACSA 236 (313)
Q Consensus 207 l~C~IC~~~~~~P-----v~l~---CgH~FC~~Cl~~~ 236 (313)
-.||-|.-.+... ++-. |++.||..|...|
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4688888776532 2323 8899999998655
No 108
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.13 E-value=26 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=24.5
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+-+.|..|...|.......=|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 64 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 64 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc
Confidence 568899999887754344567889999987654
No 109
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.67 E-value=18 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.3
Q ss_pred ccCcccccccccc---CceEcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVF---DPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+-+.|..|...|. .+....=|..||..|..+.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 63 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhC
Confidence 5689999998885 34555677889999987765
No 110
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.28 E-value=43 Score=27.60 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=29.0
Q ss_pred CccccccccccCce----Ec---ccCCcchHHHHHHhhhh-hhhccccCCCCCCCCCCCcCCcc
Q 044708 207 LTCPVCLETVFDPV----SL---TCGHILCKMCACSAASV-SIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 207 l~C~IC~~~~~~Pv----~l---~CgH~FC~~Cl~~~~~~-~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
..||||...+.+.- .+ .|..-|=..|+.-.-.. ...... +......||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~-pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNL-PESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHS-HHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcC-CCCCeeECcCCCCCCC
Confidence 46999998876542 44 36656656665211000 000000 0012689999987654
No 111
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.92 E-value=1.7 Score=31.27 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=6.1
Q ss_pred Cccccccccc
Q 044708 207 LTCPVCLETV 216 (313)
Q Consensus 207 l~C~IC~~~~ 216 (313)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 5677776544
No 112
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.54 E-value=15 Score=34.18 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=34.7
Q ss_pred ccCccccccccccCceE---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVS---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+..|.+|.+--. =+. -.|...||..||.+.+......... ......|=.|...
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~-~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVH-AMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHH-HCSSCCCTTTSSC
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhh-ccCCceEEEcCCc
Confidence 3567899886421 111 1689999999999887443332221 2467889999654
No 113
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=38.27 E-value=13 Score=37.89 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=38.8
Q ss_pred ccCccccccccccCce----------EcccCCcc--------------------hHHHHHHhhhhhhhccccCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPREKC 254 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 254 (313)
+--+|+-|+.-+.||- -+.||..| |..|..++-+.. ..+-...+..|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~---~RRfhAqp~aC 186 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPH---DRRFHAQPVAC 186 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTT---STTTTCTTCCC
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcc---cccccCCCCcC
Confidence 5678999998888772 14688665 999999985321 12223567789
Q ss_pred CCCcCCccc
Q 044708 255 PLCRQASVF 263 (313)
Q Consensus 255 P~Cr~~~~~ 263 (313)
|.|.-.+..
T Consensus 187 ~~CGP~l~l 195 (761)
T 3vth_A 187 FDCGPSLSF 195 (761)
T ss_dssp TTTSCCEEE
T ss_pred CccCCeeEE
Confidence 999877654
No 114
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.63 E-value=16 Score=26.46 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=34.2
Q ss_pred ccCccccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 205 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+=+.|..|...|... ....=|..||..|..+ .....|..|..++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~-------------~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR-------------EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT-------------CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh-------------hcCCccccCCCcccc
Confidence 458899999888654 3345678899999743 335789999998874
No 115
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.53 E-value=23 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.6
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+-+.|..|...|.......=|..||..|..+.+
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 118 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 118 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc
Confidence 457888888877654333456788999886544
No 116
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.09 E-value=13 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.5
Q ss_pred ccCccccccccccC---ceEcccCCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~ 237 (313)
+-+.|..|...|.. +....=|..||..|..+.+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~ 66 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccc
Confidence 46899999988764 5555677889999987665
No 117
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.37 E-value=22 Score=28.75 Aligned_cols=53 Identities=15% Similarity=0.391 Sum_probs=34.5
Q ss_pred ccCccccccccccCceEc----ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVSL----TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l----~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+..|.||.+-- -+.+ +|...||..||...+......... ...+..|=.|...
T Consensus 78 ~~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~-~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAI-KEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHH-TSSSCCCTTTCSS
T ss_pred CcceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHh-ccCCCEEEecCCc
Confidence 356799998632 1221 588999999999887543332211 2567889999644
No 118
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.30 E-value=4.8 Score=28.58 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHhh
Q 044708 223 TCGHILCKMCACSAA 237 (313)
Q Consensus 223 ~CgH~FC~~Cl~~~~ 237 (313)
.||+.||..|...|.
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999986663
No 119
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.30 E-value=97 Score=22.74 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.7
Q ss_pred CCCCCCCcCCccch
Q 044708 251 REKCPLCRQASVFM 264 (313)
Q Consensus 251 ~~~CP~Cr~~~~~~ 264 (313)
+..||+|..++...
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 45699999987753
No 120
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.26 E-value=47 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.600 Sum_probs=19.1
Q ss_pred ccCcccccccccc-CceEcccCCcchHH
Q 044708 205 IELTCPVCLETVF-DPVSLTCGHILCKM 231 (313)
Q Consensus 205 ~~l~C~IC~~~~~-~Pv~l~CgH~FC~~ 231 (313)
....|..|..-+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 3568999987433 35555799999964
No 121
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.42 E-value=35 Score=24.97 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=27.0
Q ss_pred ccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
+...| ||.....+-.++ .|...|=..|+.... ........||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~--------~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDR--------QHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCT--------TSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCc--------cCCCCCEECCCCcCC
Confidence 44667 887765444444 466666666763211 111246899999753
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.95 E-value=14 Score=29.06 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=29.6
Q ss_pred ccCcccccccccc---CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 205 IELTCPVCLETVF---DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 205 ~~l~C~IC~~~~~---~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
..-.|.+|...+. ++-. ..|.|.+|..|-.... .........|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~-------~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS-------NNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC-------CSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccC-------CCCCccceechhhHH
Confidence 3567999998773 2222 3699999999952210 111234567888854
No 123
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=37 Score=22.96 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=31.8
Q ss_pred ccCccccccccccC-ceEcccCCcchH-HHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 205 IELTCPVCLETVFD-PVSLTCGHILCK-MCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~-~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
+-+.|..|...+.. +....=|..||. .|..+.+ ...|..|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-------------~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-------------GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-------------SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh-------------CccCCCcCCce
Confidence 46889999988775 445556788999 5986654 45688886543
No 124
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.13 E-value=17 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=30.9
Q ss_pred CccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 204 DIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
.+...|+||...-..-.++ .|...|=..|+.... .........||.|+...
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~-------~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMA-------APPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSS-------CCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCc-------cCCCCCCEEChhccCch
Confidence 3556799998765432233 477777778873221 11113578999996543
No 125
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.82 E-value=21 Score=29.11 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=8.6
Q ss_pred ccCcccccccccc
Q 044708 205 IELTCPVCLETVF 217 (313)
Q Consensus 205 ~~l~C~IC~~~~~ 217 (313)
....|++|..+..
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3566888876554
No 126
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.41 E-value=88 Score=22.46 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCccCccccccccccCceEc---ccCCcchHHHHHHhhhhhh---hc--cccCCCCCCCCCCCc
Q 044708 203 LDIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSI---VD--GLKLADPREKCPLCR 258 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~---~~--~~~~~~~~~~CP~Cr 258 (313)
+..+-.|+||...-.+ ..+ .|+-.|=..|+.+.--.+. .. -......+..||.|-
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 3457789999854332 233 4888999999987520000 00 011234568999994
No 127
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.95 E-value=31 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=23.0
Q ss_pred ccCccccccccccCceEccc-CCcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVSLTC-GHILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~C-gH~FC~~Cl~~~~ 237 (313)
+.--|-||.+.-. -.-+.| |-.||..|..+..
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 4556999998522 112578 8899999998775
No 128
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.77 E-value=78 Score=21.63 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=29.2
Q ss_pred CccCccccccccccCceEc--c--cC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 204 DIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l--~--Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.+...| ||.......++. . |. ..|=..|+.- .........||.|+....
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl---------~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---------TTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC---------SSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc---------CcCCCCCEECCCCCcccc
Confidence 356778 898865444332 3 55 4666677631 111246789999976543
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.08 E-value=77 Score=22.94 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCccCccccccccccCceEc--c--cC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 203 LDIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l--~--Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
..+...| ||.......++. . |. .-|=..|+.- .........||.|+..-
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl---------~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---------TTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC---------SSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc---------CcCCCCCEECcCccCcC
Confidence 3456778 999865543322 3 54 3466666631 11124678999997653
No 130
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.67 E-value=42 Score=18.34 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=11.0
Q ss_pred CCCCCCCCcCCccchh
Q 044708 250 PREKCPLCRQASVFML 265 (313)
Q Consensus 250 ~~~~CP~Cr~~~~~~~ 265 (313)
....||+|.+..+...
T Consensus 5 f~vqcpvcqq~mpaah 20 (29)
T 3vhs_A 5 FQVQCPVCQQMMPAAH 20 (29)
T ss_dssp CEEECTTTCCEEEGGG
T ss_pred eeeeChHHHHhCcHHH
Confidence 3457999988765443
No 131
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.55 E-value=31 Score=27.67 Aligned_cols=46 Identities=28% Similarity=0.587 Sum_probs=30.5
Q ss_pred ccCcccccccccc---CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVF---DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~---~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+-.|.+|...|. ++-. ..|.|.+|..|-. + .+......|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~---------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-A---------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-C---------CSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-c---------cCCCCcEeeHHHHHH
Confidence 3567999998743 3322 3699999999951 1 112456788888654
No 132
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.39 E-value=61 Score=20.22 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=26.2
Q ss_pred cccccccccc-CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 208 TCPVCLETVF-DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 208 ~C~IC~~~~~-~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.|.||...-. +.+.+ .|...|=..|+...+ . ....+...||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l-----~--~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL-----Y--EVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC-----C--SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc-----C--CCCCCcEECcCcccc
Confidence 4778875432 12222 577777788874322 1 112457889999653
No 133
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.46 E-value=43 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred ccCcccccccccc--CceEcccCCcchHH
Q 044708 205 IELTCPVCLETVF--DPVSLTCGHILCKM 231 (313)
Q Consensus 205 ~~l~C~IC~~~~~--~Pv~l~CgH~FC~~ 231 (313)
....|..|..-+. .|..-.||.+||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3468999997544 37777899999975
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.24 E-value=66 Score=21.80 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.7
Q ss_pred ccCccccccccccC-ceEcccCCcchHH
Q 044708 205 IELTCPVCLETVFD-PVSLTCGHILCKM 231 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~ 231 (313)
....|..|..-+.- +..--||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45689999985443 4555799999964
No 135
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.16 E-value=36 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=20.1
Q ss_pred cCccccccccccCceEcccCCcchHH
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKM 231 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~ 231 (313)
...|..|...-..-+-|.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 56799998765555678999999953
No 136
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.93 E-value=29 Score=28.31 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=27.1
Q ss_pred cCccccccccccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 206 ELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
+-.|.+|.+-= + +.. .|...|-..|+...+ . ....+...||.|+...
T Consensus 4 ~~~C~~C~~~g-~-ll~Cd~C~~~~H~~C~~p~l-----~--~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG-E-LLCCEKCPKVFHLSCHVPTL-----T--NFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS-S-CEECSSSSCEECTTTSSSCC-----S--SCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCC-e-eeecCCCCcccCccccCCCC-----C--CCCCCCEECccccCcc
Confidence 44588887541 1 222 477777777763322 1 1124568899998654
No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.84 E-value=69 Score=21.91 Aligned_cols=47 Identities=17% Similarity=0.471 Sum_probs=29.8
Q ss_pred CccCccccccccc---cCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 204 DIELTCPVCLETV---FDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 204 ~~~l~C~IC~~~~---~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
..+..|.||.+.- .+.+.+ .|.-.|=..|+... ....+...||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---------~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---------SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---------cCCCCCcCCccCcC
Confidence 3577899998653 233433 58878888887321 11246788998854
No 138
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.25 E-value=55 Score=22.73 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=23.1
Q ss_pred ccCccccccccc-cCce--EcccCCcchHHHHHH
Q 044708 205 IELTCPVCLETV-FDPV--SLTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~-~~Pv--~l~CgH~FC~~Cl~~ 235 (313)
.+..|.+|.+.- ..++ -+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 467899998643 3333 368999999999975
No 139
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.05 E-value=22 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.4
Q ss_pred cCccccccccccCceE
Q 044708 206 ELTCPVCLETVFDPVS 221 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~ 221 (313)
.+.||||...+-++-+
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5689999988777644
No 140
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=20.89 E-value=70 Score=22.86 Aligned_cols=50 Identities=16% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCccCccccccccc-cC--ceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 203 LDIELTCPVCLETV-FD--PVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 203 ~~~~l~C~IC~~~~-~~--Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
.+++..|.||...- .+ .+++ .|.-.|=..|+... ....+...||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~---------~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS---------SCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC---------ccCCCceECccccCcc
Confidence 34678899999753 12 2222 57777888887321 1135678999996543
No 141
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.28 E-value=36 Score=22.51 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=27.8
Q ss_pred ccCccccccccccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 205 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.+..|.||.+. .-+.+ .|...|-..|+...+ .....+...||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl-------~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL-------PEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC-------SSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCc-------CcCCCCccCChhhcCc
Confidence 45679999863 22222 477677777774322 1112456889999764
No 142
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.09 E-value=24 Score=29.25 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=8.2
Q ss_pred cCcccccccccc
Q 044708 206 ELTCPVCLETVF 217 (313)
Q Consensus 206 ~l~C~IC~~~~~ 217 (313)
...|++|..++.
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 567888876543
Done!