Query 044708
Match_columns 313
No_of_seqs 372 out of 1754
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 10:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c2la2 g.44.1.2 (A:225-304) S 99.6 1.3E-16 9.8E-21 116.5 3.6 70 202-285 3-72 (80)
2 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 99.6 2.5E-16 1.9E-20 114.4 4.4 70 202-285 4-73 (78)
3 d1jm7a_ g.44.1.1 (A:) brca1 RI 99.5 6.2E-16 4.5E-20 118.3 2.1 71 203-285 18-88 (103)
4 d1jm7b_ g.44.1.1 (B:) bard1 RI 99.5 1.9E-15 1.4E-19 114.3 3.0 70 201-287 17-87 (97)
5 d1rmda2 g.44.1.1 (A:1-86) V(D) 99.5 5.4E-15 3.9E-19 108.9 3.2 53 203-265 20-72 (86)
6 d1wgma_ g.44.1.2 (A:) Ubiquiti 99.5 3.6E-14 2.7E-18 107.3 6.2 71 202-287 18-89 (98)
7 d2baya1 g.44.1.2 (A:1-56) Pre- 99.3 6.9E-14 5.1E-18 94.7 1.1 50 207-267 1-51 (56)
8 d1fbva4 g.44.1.1 (A:356-434) C 99.3 3.2E-13 2.4E-17 97.9 3.8 51 206-266 23-73 (79)
9 d1bora_ g.44.1.1 (A:) Acute pr 99.3 4.4E-13 3.2E-17 90.5 2.7 47 205-265 5-51 (56)
10 d1g25a_ g.44.1.1 (A:) TFIIH Ma 99.2 2.8E-12 2.1E-16 89.3 3.3 51 205-265 2-57 (65)
11 d1chca_ g.44.1.1 (A:) Immediat 99.2 2.8E-12 2E-16 90.1 2.1 46 206-262 5-51 (68)
12 d1iyma_ g.44.1.1 (A:) EL5 RING 99.1 1.9E-11 1.4E-15 82.0 3.8 49 203-262 2-54 (55)
13 d1ur6b_ g.44.1.1 (B:) Not-4 N- 99.1 2.8E-11 2.1E-15 80.2 3.4 47 207-263 1-51 (52)
14 d1v87a_ g.44.1.1 (A:) Deltex p 98.8 1.4E-09 1E-13 83.6 4.7 55 204-264 23-95 (114)
15 d3dplr1 g.44.1.1 (R:19-106) RI 98.7 8.7E-09 6.3E-13 75.5 4.6 45 208-263 23-85 (88)
16 d1vyxa_ g.44.1.3 (A:) IE1B pro 98.5 2.1E-08 1.5E-12 68.0 3.4 51 204-263 4-59 (60)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 98.3 4.2E-07 3.1E-11 66.9 5.5 51 206-259 5-58 (94)
18 d2cs3a1 g.44.1.3 (A:8-87) Prot 93.4 0.07 5.1E-06 35.5 5.2 34 205-238 7-44 (80)
19 d1weoa_ g.44.1.1 (A:) Cellulos 77.8 1.5 0.00011 30.0 4.4 50 205-264 15-71 (93)
20 d2jnea1 g.41.18.1 (A:1-71) Hyp 75.7 0.052 3.8E-06 36.2 -3.6 42 206-263 2-43 (71)
21 d1wila_ g.50.1.3 (A:) Hypothet 69.4 3.1 0.00023 28.1 4.4 56 203-259 12-75 (89)
22 d1z60a1 g.49.1.2 (A:328-386) T 68.3 2.6 0.00019 26.7 3.5 42 205-257 14-58 (59)
23 d1nnqa2 g.41.5.1 (A:135-171) R 62.1 1.9 0.00014 24.7 1.7 12 250-261 19-30 (37)
24 d1dvpa2 g.50.1.1 (A:149-220) H 60.2 1.5 0.00011 29.0 1.3 30 205-234 12-45 (72)
25 d1vfya_ g.50.1.1 (A:) vps27p p 57.8 2.3 0.00017 27.5 1.9 29 207-235 6-38 (67)
26 d1joca1 g.50.1.1 (A:1348-1411) 55.8 2.1 0.00015 27.5 1.4 30 205-234 7-40 (64)
27 d2o35a1 a.293.1.1 (A:2-80) Hyp 52.9 2.3 0.00017 28.3 1.2 12 227-238 39-50 (79)
28 d1ibia2 g.39.1.3 (A:145-175) C 52.5 1.7 0.00012 23.2 0.3 27 207-233 1-28 (31)
29 d2epqa1 g.37.1.1 (A:380-411) P 51.8 2.1 0.00015 22.9 0.7 14 205-218 2-15 (32)
30 d2dlqa3 g.37.1.1 (A:63-92) GLI 48.6 2.4 0.00017 22.3 0.6 15 205-219 3-17 (30)
31 d1yuza2 g.41.5.1 (A:167-202) N 47.4 4.5 0.00033 22.9 1.7 12 250-261 19-30 (36)
32 d2fiya1 e.59.1.1 (A:19-308) Fd 42.1 2.4 0.00018 35.8 -0.1 33 205-237 163-201 (290)
33 d1y02a2 g.50.1.1 (A:20-70) Rif 41.4 3.6 0.00026 25.1 0.7 26 208-233 2-31 (51)
34 d1zbdb_ g.50.1.1 (B:) Effector 40.6 5.1 0.00037 29.1 1.6 46 207-259 49-99 (124)
35 d1f62a_ g.50.1.2 (A:) Williams 36.5 11 0.00083 22.3 2.6 46 208-260 2-50 (51)
36 d2d8xa1 g.39.1.3 (A:33-64) Pin 33.7 10 0.00075 20.3 1.7 28 208-235 1-29 (32)
37 d2ct7a1 g.44.1.4 (A:8-80) Ring 33.2 4.4 0.00032 26.5 0.1 31 206-236 18-54 (73)
38 d1lkoa2 g.41.5.1 (A:148-191) R 32.2 5.4 0.00039 23.6 0.4 13 250-262 23-35 (44)
39 d1wfla_ g.80.1.1 (A:) Zinc fin 31.9 21 0.0016 23.3 3.4 28 205-232 24-52 (74)
40 d1wfpa_ g.80.1.1 (A:) Zinc fin 30.1 23 0.0017 23.1 3.3 29 205-233 24-53 (74)
41 d1mm2a_ g.50.1.2 (A:) Mi2-beta 27.5 12 0.00084 23.3 1.4 47 206-261 9-57 (61)
42 d1p91a_ c.66.1.33 (A:) rRNA me 27.3 7.8 0.00057 31.6 0.7 23 206-228 1-26 (268)
43 d1wfha_ g.80.1.1 (A:) Zinc fin 26.6 23 0.0017 22.4 2.8 29 205-233 14-43 (64)
44 d6rxna_ g.41.5.1 (A:) Rubredox 25.0 13 0.00092 22.0 1.2 13 202-214 25-37 (45)
45 d2dasa1 g.39.1.17 (A:8-56) Zin 23.8 19 0.0014 21.3 1.8 31 205-235 12-47 (49)
46 d1wfka_ g.50.1.1 (A:) Zinc fin 22.1 13 0.00094 25.1 0.9 31 205-235 8-42 (88)
47 d2eppa1 g.37.1.1 (A:286-338) P 21.8 8.1 0.00059 23.0 -0.2 17 206-222 6-22 (53)
48 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 21.2 48 0.0035 22.1 3.7 28 206-233 25-54 (85)
No 1
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.60 E-value=1.3e-16 Score=116.51 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=59.7
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
++.+++.||||+++|.+||+++|||+||+.||.+|+. .....||.||.++...+.. .|..|+++++
T Consensus 3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~----------~~~~~cP~c~~~l~~~~l~----pN~~L~~~I~ 68 (80)
T d2c2la2 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLI----PNLAMKEVID 68 (80)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCE----ECHHHHHHHH
T ss_pred CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHh----------cCCccCCCccccccccccc----cHHHHHHHHH
Confidence 3458999999999999999999999999999999972 3456799999998876654 7888999998
Q ss_pred HHHH
Q 044708 282 EYWE 285 (313)
Q Consensus 282 ~~~~ 285 (313)
.|.+
T Consensus 69 ~~l~ 72 (80)
T d2c2la2 69 AFIS 72 (80)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 2
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.59 E-value=2.5e-16 Score=114.43 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=59.6
Q ss_pred cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR 281 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 281 (313)
++.+++.||||+++|.+||+++|||+||+.||..|+. .+...||.|+.++...+.. .|..|+++++
T Consensus 4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~----------~~~~~cP~~~~~l~~~~l~----pN~~L~~~I~ 69 (78)
T d1t1ha_ 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT----PNYVLKSLIA 69 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE----ECTTTHHHHH
T ss_pred CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHH----------HCCCCCCcccccCCccccc----chHHHHHHHH
Confidence 3558999999999999999999999999999999982 3456799999998876654 6788888888
Q ss_pred HHHH
Q 044708 282 EYWE 285 (313)
Q Consensus 282 ~~~~ 285 (313)
.|.+
T Consensus 70 ~~~~ 73 (78)
T d1t1ha_ 70 LWCE 73 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 3
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=6.2e-16 Score=118.34 Aligned_cols=71 Identities=28% Similarity=0.627 Sum_probs=55.1
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE 282 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 282 (313)
+++.+.||||++++.+|++++|||+||..||.+|+.. ..+...||.||.++...+.. .|..+.++++.
T Consensus 18 l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~l~----~n~~l~~~ve~ 85 (103)
T d1jm7a_ 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQ----ESTRFSQLVEE 85 (103)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCB----CCCSSSHHHHH
T ss_pred cccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHH--------CCCCCcCcCCCCcCChhhCC----cCHHHHHHHHH
Confidence 4578999999999999999999999999999999721 13446899999998766643 45555556665
Q ss_pred HHH
Q 044708 283 YWE 285 (313)
Q Consensus 283 ~~~ 285 (313)
+.+
T Consensus 86 l~~ 88 (103)
T d1jm7a_ 86 LLK 88 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 4
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=1.9e-15 Score=114.34 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=57.5
Q ss_pred ccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708 201 IRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS 279 (313)
Q Consensus 201 ~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 279 (313)
..+.+.++||||++++.+|+++ +|||+||..||.+|+ ...||.||.++...+.. .|..+.++
T Consensus 17 ~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-------------~~~CP~Cr~~~~~~~l~----~n~~l~~l 79 (97)
T d1jm7b_ 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-------------GTGCPVCYTPAWIQDLK----INRQLDSM 79 (97)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-------------TTBCSSSCCBCSCSSCC----CCHHHHHH
T ss_pred HhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHH-------------hccccccCCcCchhhCc----ccHHHHHH
Confidence 4567889999999999999986 799999999998886 12599999998776654 78888888
Q ss_pred HHHHHHHH
Q 044708 280 CREYWEKR 287 (313)
Q Consensus 280 ~~~~~~~~ 287 (313)
++.+...+
T Consensus 80 v~~~~~~~ 87 (97)
T d1jm7b_ 80 IQLCSKLR 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88775543
No 5
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.48 E-value=5.4e-15 Score=108.90 Aligned_cols=53 Identities=25% Similarity=0.640 Sum_probs=45.7
Q ss_pred CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+.+.+.||||++.+.+|++++|||+||+.||.+|+. .....||.||.++...+
T Consensus 20 ~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~p~~~~~ 72 (86)
T d1rmda2 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTD 72 (86)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGG
T ss_pred hccCcCCccCCcchhcceecCCCChhhHHHHHHHHh----------hCCCcCcccCCCCChhh
Confidence 346789999999999999999999999999999972 24457999999987665
No 6
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.45 E-value=3.6e-14 Score=107.26 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=60.3
Q ss_pred cCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708 202 RLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC 280 (313)
Q Consensus 202 ~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 280 (313)
.+.+++.||||+++|.+||+++|| |+||+.||.+|+ .....||.|+.++...++. .|..|++.+
T Consensus 18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l-----------~~~~~~P~~~~~l~~~~L~----pN~~Lr~~I 82 (98)
T d1wgma_ 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-----------LSDQTDPFNRSPLTMDQIR----PNTELKEKI 82 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-----------TTSCBCTTTCSBCCTTTSE----ECHHHHHHH
T ss_pred CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHH-----------HhcCCcccccccccchhhc----chHHHHHHH
Confidence 345789999999999999999866 589999999997 4456899999999877765 789999999
Q ss_pred HHHHHHH
Q 044708 281 REYWEKR 287 (313)
Q Consensus 281 ~~~~~~~ 287 (313)
+.|.+.+
T Consensus 83 ~~~~~~~ 89 (98)
T d1wgma_ 83 QRWLAER 89 (98)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9886653
No 7
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.34 E-value=6.9e-14 Score=94.70 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=43.2
Q ss_pred CccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708 207 LTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL 267 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 267 (313)
+.||||++.+.+||.+ .|||+||+.||.+|+. ....||.||.++...+.+
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~-----------~~~~CP~c~~~l~~~dLi 51 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEIV 51 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGCE
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHh-----------hccCCCccCCcCCHHhce
Confidence 5799999999999987 4999999999999982 245799999999877754
No 8
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=3.2e-13 Score=97.87 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=43.8
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF 266 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 266 (313)
...|+||++.+.+|+.++|||.||..||.+|+. .+...||+||..+.....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~----------~~~~~CP~Cr~~i~~~~~ 73 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGTEP 73 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHH----------TTCCSCTTTCCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHH----------HCcCcCCCCCcCccCCce
Confidence 356999999999999999999999999999972 345679999999876553
No 9
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=4.4e-13 Score=90.48 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=40.7
Q ss_pred ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
+.+.|+||++.+.+|++++|||+||..||.+ ....||.||.+++...
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~~ 51 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCCS
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHc--------------CCCcCcCCCCcccCCC
Confidence 4679999999999999999999999999842 3568999999987654
No 10
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.20 E-value=2.8e-12 Score=89.27 Aligned_cols=51 Identities=27% Similarity=0.584 Sum_probs=39.7
Q ss_pred ccCcccccccccc-Cc----eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708 205 IELTCPVCLETVF-DP----VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML 265 (313)
Q Consensus 205 ~~l~C~IC~~~~~-~P----v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 265 (313)
++..||||++.+. .| +.++|||+||..||..|+. .....||.||+++...+
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~----------~~~~~CP~CR~~i~~~~ 57 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhC----------cCcCCCCCCCcCccccc
Confidence 5789999998653 22 4568999999999999972 33457999999986554
No 11
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=99.17 E-value=2.8e-12 Score=90.11 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=38.8
Q ss_pred cCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 206 ELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
.-.||||++.+.+|+. ++|||+||..|+.+|+ .....||+||.++.
T Consensus 5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~-----------~~~~~CP~CR~~i~ 51 (68)
T d1chca_ 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWI-----------RQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH-----------HHSCSTTTTCCCCC
T ss_pred CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHH-----------HhCCcCCCCCcchH
Confidence 3459999999988765 7999999999999998 23468999999875
No 12
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=99.11 E-value=1.9e-11 Score=81.99 Aligned_cols=49 Identities=35% Similarity=0.676 Sum_probs=39.9
Q ss_pred CCccCccccccccccC---ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708 203 LDIELTCPVCLETVFD---PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~---Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 262 (313)
++++..|+||++.+.+ .+.+ +|||.||..|+.+|+ .....||+||.++.
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl-----------~~~~~CP~CR~~i~ 54 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHH-----------HhCCcCCCCCCEeE
Confidence 4577889999999874 3445 599999999999998 44568999999764
No 13
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.07 E-value=2.8e-11 Score=80.22 Aligned_cols=47 Identities=30% Similarity=0.719 Sum_probs=36.7
Q ss_pred CccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 207 LTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 207 l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
+.||||++.+.. ++.++|||.||..|+.+|+. .....||+||+++..
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~----------~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPE 51 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTT----------TSCCBCTTTCCBCSC
T ss_pred CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHh----------hcCCCCCccCCcCCC
Confidence 469999998753 33458999999999999972 334579999998753
No 14
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.81 E-value=1.4e-09 Score=83.61 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=40.1
Q ss_pred CccCccccccccccCc------------------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 204 DIELTCPVCLETVFDP------------------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
..+..|+||++.+.++ +.++|||.||..||..|+... ...+...||+||..+...
T Consensus 23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~------~~~~~~~CP~CR~~~~~~ 95 (114)
T d1v87a_ 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG------NKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT------CCSSCCBCTTTCCBSSSC
T ss_pred cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhc------CcCCCCccccccchhccC
Confidence 3456799999987543 346899999999999998321 113456899999887543
No 15
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.66 E-value=8.7e-09 Score=75.49 Aligned_cols=45 Identities=24% Similarity=0.542 Sum_probs=35.2
Q ss_pred ccccccccccC------------------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 208 TCPVCLETVFD------------------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 208 ~C~IC~~~~~~------------------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
.|+||++.+.+ ++.++|||.|+..||.+|+ .....||+||++...
T Consensus 23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~ 85 (88)
T d3dplr1 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF 85 (88)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCCE
T ss_pred cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHH-----------HHCCcCCCCCCcccc
Confidence 48888766543 2446899999999999998 445689999998764
No 16
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=98.54 E-value=2.1e-08 Score=67.97 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=40.6
Q ss_pred CccCccccccccccCceEccc-----CCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 204 DIELTCPVCLETVFDPVSLTC-----GHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 204 ~~~l~C~IC~~~~~~Pv~l~C-----gH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
++...|+||++.+.++...+| +|.|+..||..|+.. .+...||+||+++..
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~---------~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh---------CCCCCCcccCCeeec
Confidence 467789999999888877665 599999999999831 234689999998753
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.28 E-value=4.2e-07 Score=66.86 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=36.2
Q ss_pred cCcccccccccc--C-ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 206 ELTCPVCLETVF--D-PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 206 ~l~C~IC~~~~~--~-Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
...|+||++.+. + +..++|||.||..|+..|+.....++ ......||.|.-
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~---~~~~i~CP~~~C 58 (94)
T d1wima_ 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAAC 58 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTC
T ss_pred CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcC---CccccCCcCCCC
Confidence 567999998774 3 44558999999999999985433222 133568998654
No 18
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.43 E-value=0.07 Score=35.54 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=27.8
Q ss_pred ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708 205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS 238 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~ 238 (313)
..+.|.+|.+-+.|.....| +|.||..|-...+.
T Consensus 7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik 44 (80)
T d2cs3a1 7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 44 (80)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence 35889999999998766544 69999999988774
No 19
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=77.76 E-value=1.5 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.489 Sum_probs=35.2
Q ss_pred ccCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708 205 IELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM 264 (313)
Q Consensus 205 ~~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 264 (313)
..-.|.||.+.+- +|.+. .|+-..|+.|..--. ..+...||.|..+....
T Consensus 15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----------keG~q~CpqCkt~Ykr~ 71 (93)
T d1weoa_ 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----------REGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----------HTSCSSCTTTCCCCCCC
T ss_pred ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHH----------hccCccCcccCChhhhh
Confidence 3567999998754 33222 588889999985332 25678999999887643
No 20
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=75.74 E-value=0.052 Score=36.22 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=28.7
Q ss_pred cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF 263 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 263 (313)
++.||.|...+.. .=||.+|..|-..+ .....||.|..++..
T Consensus 2 ~~~CP~C~~eL~~----~~~~~~C~~C~~~~------------~~~a~CPdC~~~Le~ 43 (71)
T d2jnea1 2 ELHCPQCQHVLDQ----DNGHARCRSCGEFI------------EMKALCPDCHQPLQV 43 (71)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEE------------EEEEECTTTCSBCEE
T ss_pred CCcCCCccCcccc----cCCCEehhhhhhhh------------eeEEeCCccccHHHH
Confidence 5789999976542 22677888885332 335689999988753
No 21
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.42 E-value=3.1 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.366 Sum_probs=33.9
Q ss_pred CCccCccccccccccCceEcc---cCCcchHHHHHHhhhhh---hhc--cccCCCCCCCCCCCcC
Q 044708 203 LDIELTCPVCLETVFDPVSLT---CGHILCKMCACSAASVS---IVD--GLKLADPREKCPLCRQ 259 (313)
Q Consensus 203 ~~~~l~C~IC~~~~~~Pv~l~---CgH~FC~~Cl~~~~~~~---~~~--~~~~~~~~~~CP~Cr~ 259 (313)
+..+..|+|| +.+..-..+| |+..|=..|+.+.--.+ ... .......+.+|+.|-.
T Consensus 12 v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~n 75 (89)
T d1wila_ 12 VVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcCcccccc-CcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcc
Confidence 4467889999 6666555555 78888899998762000 000 0111245678999954
No 22
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.26 E-value=2.6 Score=26.66 Aligned_cols=42 Identities=26% Similarity=0.554 Sum_probs=29.9
Q ss_pred ccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708 205 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 257 (313)
....|--|+..+.+.... .|++.||..|=.=. ...-..||-|
T Consensus 14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fi-----------He~lh~CpgC 58 (59)
T d1z60a1 14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV-----------HDSLHSCPGC 58 (59)
T ss_dssp SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTT-----------TTTSCSSSTT
T ss_pred CCCCccCCCCcCCCCceEECcCCCCccccccchhh-----------hhhhcCCCCC
Confidence 356788898887766443 59999999995222 2456689988
No 23
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=62.07 E-value=1.9 Score=24.74 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=8.5
Q ss_pred CCCCCCCCcCCc
Q 044708 250 PREKCPLCRQAS 261 (313)
Q Consensus 250 ~~~~CP~Cr~~~ 261 (313)
.+..||+|..+-
T Consensus 19 ~P~~CPvCg~~~ 30 (37)
T d1nnqa2 19 APEYCPVCGAPK 30 (37)
T ss_dssp CCSBCTTTCCBG
T ss_pred CCCcCCCCCCcH
Confidence 356799997763
No 24
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=60.20 E-value=1.5 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=21.4
Q ss_pred ccCccccccccccCc---eE-cccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDP---VS-LTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P---v~-l~CgH~FC~~Cl~ 234 (313)
++-.|.+|...|.-- .. -.||+.||..|..
T Consensus 12 ~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~ 45 (72)
T d1dvpa2 12 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 45 (72)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred cCCccccCCCcccCccccccccccCCeeChhhhC
Confidence 345699999866532 22 3699999999974
No 25
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.85 E-value=2.3 Score=27.53 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=20.6
Q ss_pred CccccccccccCc---eE-cccCCcchHHHHHH
Q 044708 207 LTCPVCLETVFDP---VS-LTCGHILCKMCACS 235 (313)
Q Consensus 207 l~C~IC~~~~~~P---v~-l~CgH~FC~~Cl~~ 235 (313)
-.|.+|...|.-- .. -.||..||..|...
T Consensus 6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~ 38 (67)
T d1vfya_ 6 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 38 (67)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccccCCCcccCcccccccccCCCEecccccCC
Confidence 4699999866421 21 26999999999743
No 26
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.78 E-value=2.1 Score=27.46 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=21.1
Q ss_pred ccCccccccccccCce---E-cccCCcchHHHHH
Q 044708 205 IELTCPVCLETVFDPV---S-LTCGHILCKMCAC 234 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl~ 234 (313)
+...|.+|...|.--. . -.||++||..|..
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~ 40 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 40 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeecccccC
Confidence 3456999987665321 1 3699999999964
No 27
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=52.90 E-value=2.3 Score=28.33 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.4
Q ss_pred cchHHHHHHhhh
Q 044708 227 ILCKMCACSAAS 238 (313)
Q Consensus 227 ~FC~~Cl~~~~~ 238 (313)
.||+.|+.+|+.
T Consensus 39 GFCRNCLskWy~ 50 (79)
T d2o35a1 39 GFCRNCLSNWYR 50 (79)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999983
No 28
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=52.52 E-value=1.7 Score=23.22 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=20.2
Q ss_pred CccccccccccCceEc-ccCCcchHHHH
Q 044708 207 LTCPVCLETVFDPVSL-TCGHILCKMCA 233 (313)
Q Consensus 207 l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl 233 (313)
++|..|..-+...... .=|..||+.|-
T Consensus 1 frca~cgk~lestt~adkdgeiyck~cy 28 (31)
T d1ibia2 1 FRCAKCGKSLESTTLTEKEGEIYCKGCY 28 (31)
T ss_dssp EECSSSCCEECSSCSEEETTEEECHHHH
T ss_pred CccccccCccccceeeccCCcEEEeeee
Confidence 4689998877655433 47889999996
No 29
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.75 E-value=2.1 Score=22.88 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=10.6
Q ss_pred ccCccccccccccC
Q 044708 205 IELTCPVCLETVFD 218 (313)
Q Consensus 205 ~~l~C~IC~~~~~~ 218 (313)
.-+.||||..-|..
T Consensus 2 kp~~cpic~qrfkr 15 (32)
T d2epqa1 2 KPYSCPVCGLRFKR 15 (32)
T ss_dssp CSSEETTTTEECSC
T ss_pred CCcccchHHHHhhc
Confidence 35789999987763
No 30
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.63 E-value=2.4 Score=22.27 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.2
Q ss_pred ccCccccccccccCc
Q 044708 205 IELTCPVCLETVFDP 219 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P 219 (313)
.-++|++|.+.|..-
T Consensus 3 qvftcs~cqe~f~rr 17 (30)
T d2dlqa3 3 QVFTCSVCQETFRRR 17 (30)
T ss_dssp CCEECSSSCCEESSH
T ss_pred ceEEeHHHHHHHHHH
Confidence 468999999998754
No 31
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=47.45 E-value=4.5 Score=22.87 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=8.5
Q ss_pred CCCCCCCCcCCc
Q 044708 250 PREKCPLCRQAS 261 (313)
Q Consensus 250 ~~~~CP~Cr~~~ 261 (313)
.+..||+|..+-
T Consensus 19 ~Pe~CPvCg~~~ 30 (36)
T d1yuza2 19 DFEKCPICFRPK 30 (36)
T ss_dssp CCSBCTTTCCBG
T ss_pred CCCcCCCCCCcH
Confidence 356799997763
No 32
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.08 E-value=2.4 Score=35.80 Aligned_cols=33 Identities=24% Similarity=0.589 Sum_probs=18.1
Q ss_pred ccCccccccccccCceEcc----cC--CcchHHHHHHhh
Q 044708 205 IELTCPVCLETVFDPVSLT----CG--HILCKMCACSAA 237 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~l~----Cg--H~FC~~Cl~~~~ 237 (313)
..-.||||...-.--+... =| +..|..|-.+|.
T Consensus 163 ~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~ 201 (290)
T d2fiya1 163 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH 201 (290)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE
T ss_pred cCCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccc
Confidence 4456999987533222221 22 446777766663
No 33
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.42 E-value=3.6 Score=25.14 Aligned_cols=26 Identities=23% Similarity=0.720 Sum_probs=18.0
Q ss_pred ccccccccccCce---E-cccCCcchHHHH
Q 044708 208 TCPVCLETVFDPV---S-LTCGHILCKMCA 233 (313)
Q Consensus 208 ~C~IC~~~~~~Pv---~-l~CgH~FC~~Cl 233 (313)
.|.+|...|.--. . -.||..||..|.
T Consensus 2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs 31 (51)
T d1y02a2 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCS 31 (51)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGE
T ss_pred CccccCCcccCCccCcccccCCcccCcccc
Confidence 4777877665221 1 369999999995
No 34
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.62 E-value=5.1 Score=29.07 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=28.0
Q ss_pred Ccccccccccc---CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708 207 LTCPVCLETVF---DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259 (313)
Q Consensus 207 l~C~IC~~~~~---~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~ 259 (313)
-.|++|...|. .... ..||+.||..|-... ..........|..|..
T Consensus 49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~-------~~~~~~~~w~C~~C~k 99 (124)
T d1zbdb_ 49 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET-------SNNRPHPVWLCKICLE 99 (124)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC-------CCSSSSCCEEEHHHHH
T ss_pred CcCcccCCcccCCCCCCCcCccCCcccccCCCCCc-------cCCCCCCCEECccCcc
Confidence 45999987643 3322 379999999995211 1111233467888854
No 35
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.47 E-value=11 Score=22.27 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=27.1
Q ss_pred ccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708 208 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 260 (313)
.|.||...-..-.++ .|...|=..|+.... .........||.|+..
T Consensus 2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~-------~~~p~~~W~C~~C~~~ 50 (51)
T d1f62a_ 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL-------YEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC-------CSCCSSCCSCTTTSCC
T ss_pred CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCC-------CcCCCCCEECcCCcCc
Confidence 577886543222222 588788888884432 1112456889999753
No 36
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.72 E-value=10 Score=20.32 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=21.4
Q ss_pred ccccccccccCceEc-ccCCcchHHHHHH
Q 044708 208 TCPVCLETVFDPVSL-TCGHILCKMCACS 235 (313)
Q Consensus 208 ~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~ 235 (313)
.|.||...+.|--.+ .=|...|+.|-.+
T Consensus 1 rC~~C~~~LAD~GFvKnagR~LCrpch~r 29 (32)
T d2d8xa1 1 RCDLCQEVLADIGFVKNAGRHLCRPCHNR 29 (32)
T ss_dssp BCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CchHHHhHHHHhhhhhcccccccchhhhh
Confidence 489999988876554 5788899999643
No 37
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.20 E-value=4.4 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=20.0
Q ss_pred cCcccccccccc-C---ce-Ec-ccCCcchHHHHHHh
Q 044708 206 ELTCPVCLETVF-D---PV-SL-TCGHILCKMCACSA 236 (313)
Q Consensus 206 ~l~C~IC~~~~~-~---Pv-~l-~CgH~FC~~Cl~~~ 236 (313)
-..||-|...+. + +. +- .||+.||..|-..|
T Consensus 18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w 54 (73)
T d2ct7a1 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 54 (73)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcch
Confidence 345888876543 1 22 22 58999999997554
No 38
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=32.24 E-value=5.4 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=9.3
Q ss_pred CCCCCCCCcCCcc
Q 044708 250 PREKCPLCRQASV 262 (313)
Q Consensus 250 ~~~~CP~Cr~~~~ 262 (313)
.+..||+|..+-.
T Consensus 23 aP~~CPvC~~p~~ 35 (44)
T d1lkoa2 23 APELCPACAHPKA 35 (44)
T ss_dssp CCSBCTTTCCBGG
T ss_pred CCCcCCCCCCcHH
Confidence 4568999987643
No 39
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.93 E-value=21 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=19.9
Q ss_pred ccCcccccccccc-CceEcccCCcchHHH
Q 044708 205 IELTCPVCLETVF-DPVSLTCGHILCKMC 232 (313)
Q Consensus 205 ~~l~C~IC~~~~~-~Pv~l~CgH~FC~~C 232 (313)
...+|.+|..-+. .++.-.||+.||...
T Consensus 24 k~~RC~~C~KKl~l~~~~CrCg~~FC~~H 52 (74)
T d1wfla_ 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred CCCcChhhCCcccceeeEccCCCEehhhc
Confidence 3568999985443 245557999999764
No 40
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.06 E-value=23 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred ccCccccccccccCc-eEcccCCcchHHHH
Q 044708 205 IELTCPVCLETVFDP-VSLTCGHILCKMCA 233 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Cl 233 (313)
....|.+|..-+.-. ..-.||+.||....
T Consensus 24 kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR 53 (74)
T d1wfpa_ 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHR 53 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred CCCcChhcCCccCCCceecCCCChhhhccC
Confidence 467899998765433 33479999998763
No 41
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.46 E-value=12 Score=23.27 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred cCccccccccccCceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708 206 ELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 261 (313)
+..|.+|.+- .-++. .|.-.|...|+.... .........||.|+...
T Consensus 9 ~~~C~~C~~~--g~lv~Cd~C~~~~H~~C~~~~~-------~~~~~~~W~C~~C~~~~ 57 (61)
T d1mm2a_ 9 MEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL-------PEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC-------SSCCSSCCCCTTTTTTC
T ss_pred cCCCcCCCCC--CeEEEeCCCCccCchhhcCCCc-------CcCCCCcEECCCCcCcc
Confidence 3468899863 22222 588888888874322 11124568999997653
No 42
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}
Probab=27.25 E-value=7.8 Score=31.57 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=13.5
Q ss_pred cCcccccccccc-CceEccc--CCcc
Q 044708 206 ELTCPVCLETVF-DPVSLTC--GHIL 228 (313)
Q Consensus 206 ~l~C~IC~~~~~-~Pv~l~C--gH~F 228 (313)
.+.||||...+. +.-.+.| +|+|
T Consensus 1 sf~CP~C~~~L~~~~~~l~C~~~h~f 26 (268)
T d1p91a_ 1 SFSCPLCHQPLSREKNSYICPQRHQF 26 (268)
T ss_dssp CBBCTTTCCBCEEETTEEECTTCCEE
T ss_pred CccCCCCChhhhcCCCeEECCCCCcc
Confidence 368999997654 2223444 4554
No 43
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.62 E-value=23 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=21.0
Q ss_pred ccCccccccccccC-ceEcccCCcchHHHH
Q 044708 205 IELTCPVCLETVFD-PVSLTCGHILCKMCA 233 (313)
Q Consensus 205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Cl 233 (313)
....|.+|..-+.- ++.-.||+.||....
T Consensus 14 k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR 43 (64)
T d1wfha_ 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHR 43 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTTC
T ss_pred CCCcChhhCCCccceeeeccCCCEehhhcC
Confidence 45689999875442 455579999998653
No 44
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=24.99 E-value=13 Score=21.97 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=10.6
Q ss_pred cCCccCccccccc
Q 044708 202 RLDIELTCPVCLE 214 (313)
Q Consensus 202 ~~~~~l~C~IC~~ 214 (313)
.+.++..||+|.-
T Consensus 25 ~LP~dw~CP~C~a 37 (45)
T d6rxna_ 25 QLPDDWCCPVCGV 37 (45)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCCCcCCCC
Confidence 4668999999974
No 45
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.80 E-value=19 Score=21.29 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=23.2
Q ss_pred ccCccccccccccCceE----cccCCcchHH-HHHH
Q 044708 205 IELTCPVCLETVFDPVS----LTCGHILCKM-CACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~-Cl~~ 235 (313)
....|.-|..++..--+ -.+.|.||.. ||.+
T Consensus 12 ~~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl~~ 47 (49)
T d2dasa1 12 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS 47 (49)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred eEeEecccchHHhccchHHhhCCCcceeEcchhhcc
Confidence 46789999999875433 2599999975 7754
No 46
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.07 E-value=13 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=21.6
Q ss_pred ccCccccccccccCc---eE-cccCCcchHHHHHH
Q 044708 205 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 235 (313)
Q Consensus 205 ~~l~C~IC~~~~~~P---v~-l~CgH~FC~~Cl~~ 235 (313)
..-.|.+|...|.-- .. -.||-+||..|...
T Consensus 8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~ 42 (88)
T d1wfka_ 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred ccCcCcccCchhccccccccccccChhhChHHhCC
Confidence 355699999876422 22 26999999999843
No 47
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.77 E-value=8.1 Score=22.99 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.2
Q ss_pred cCccccccccccCceEc
Q 044708 206 ELTCPVCLETVFDPVSL 222 (313)
Q Consensus 206 ~l~C~IC~~~~~~Pv~l 222 (313)
-+.|.+|..+|.+|+.+
T Consensus 6 l~pCG~CgK~Ftd~~rL 22 (53)
T d2eppa1 6 ILPCGLCGKVFTDANRL 22 (53)
T ss_dssp CCCCTTTCCCCSCHHHH
T ss_pred eeeccccccccCCHHHH
Confidence 46799999999998754
No 48
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.24 E-value=48 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=21.5
Q ss_pred cCcccccccccc--CceEcccCCcchHHHH
Q 044708 206 ELTCPVCLETVF--DPVSLTCGHILCKMCA 233 (313)
Q Consensus 206 ~l~C~IC~~~~~--~Pv~l~CgH~FC~~Cl 233 (313)
..+|.+|..-+. .+..-.||+.||....
T Consensus 25 ~~RC~~C~KKl~l~~~~~CrCg~~FC~~HR 54 (85)
T d1wffa_ 25 MKHCFLCGKKTGLATSFECRCGNNFCASHR 54 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTTC
T ss_pred CCcChhcCCeecCCcCeecCCCCEehhhcC
Confidence 358999987654 4666689999998764
Done!