BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044710
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 124/290 (42%), Gaps = 45/290 (15%)
Query: 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFY 61
L +L L+ N L G +P L+ C L +++ NN ++ P W+G L L IL+L +N F
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 62 GPL------CKSNITFPFQALQIIDLSHNEFTGFLPTRIF--PGMEA-----------MK 102
G + C+S L +DL+ N F G +P +F G A +K
Sbjct: 525 GNIPAELGDCRS--------LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 103 NVDEQRRLEYMGGAFYNESI-----------------TVVMKGHDFQLQKILVMFRAMDF 145
N ++ G + I + V GH +D
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 146 SSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 205
S N G IP+ +G+ L +LNL HN ++G+IP ++ L LDLS NKLDGRIP+
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 206 XXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC 255
N L G IP QF TF ++ N LCG PL RC
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 745
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 111/267 (41%), Gaps = 46/267 (17%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LD+++N +P L C L+ +++ N +S F + + ELK+L + SN+F
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 61 YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGA---F 117
GP+ P ++LQ + L+ N+FTG +P + + + +D Y GA F
Sbjct: 257 VGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY--GAVPPF 310
Query: 118 YNESITVVMK-------GHDFQLQKILVM--FRAMDFSSNRFHGEIPEVLGNFK------ 162
+ + + + +L M + +D S N F GE+PE L N
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 163 ---------------------SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 201
+L+ L L +N TG IP + N + L SL LSFN L G
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 202 IPEQXXXXXXXXXXXXXYNRLWGRIPR 228
IP N L G IP+
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 113/251 (45%), Gaps = 17/251 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLA-KCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNR 59
+L+ L L NK G +P L+ C L +++ N + P + GS L+ L L SN
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 60 FYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQR-RLEYMGGAFY 118
F G L + + L+++DLS NEF+G LP E++ N+ L+ F
Sbjct: 327 FSGELPMDTL-LKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNFS 378
Query: 119 NESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 178
+ + + LQ++ + +N F G+IP L N L L+LS N L+G I
Sbjct: 379 GPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 179 PVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEND 238
P S +++ L L L N L+G IP++ +N L G IP G T N
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 239 SYIGNIHLCGE 249
+ N L GE
Sbjct: 492 ISLSNNRLTGE 502
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 10 NKLEGPLPI-SLAKCMKLEVVNVGNNMISDSFPCWLGSL-PELKILELRSNRFYGPLCKS 67
N G LP+ +L K L+V+++ N S P L +L L L+L SN F GP+ +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 68 NITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMK 127
P LQ + L +N FTG +P + E V Y+ G S+ + K
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL---VSLHLSFNYLSGTIP-SSLGSLSK 440
Query: 128 GHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 187
D +L N GEIP+ L K+L+ L L N LTG IP N T
Sbjct: 441 LRDLKLWL------------NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 188 LESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIP 227
L + LS N+L G IP+ N G IP
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 1 NLRSLDLNNNKLEGPLP--ISLAKCMKLEVVNVGNNMISDSFPCWLGS---LPELKILEL 55
+L SLDL+ N L GP+ SL C L+ +NV +N + FP + L L++L+L
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 155
Query: 56 RSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQR--RLEYM 113
+N G ++ ++ G L G + +VD R LE++
Sbjct: 156 SANSISGA-------------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 202
Query: 114 GGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS 173
+ N S + G LQ +D S N+ G+ + LK+LN+S N
Sbjct: 203 DVSSNNFSTGIPFLGDCSALQH-------LDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 174 LTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
G IP + +L+ L L+ NK G IP+
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIPD 284
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 124/290 (42%), Gaps = 45/290 (15%)
Query: 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFY 61
L +L L+ N L G +P L+ C L +++ NN ++ P W+G L L IL+L +N F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 62 GPL------CKSNITFPFQALQIIDLSHNEFTGFLPTRIF--PGMEA-----------MK 102
G + C+S L +DL+ N F G +P +F G A +K
Sbjct: 528 GNIPAELGDCRS--------LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 103 NVDEQRRLEYMGGAFYNESI-----------------TVVMKGHDFQLQKILVMFRAMDF 145
N ++ G + I + V GH +D
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 146 SSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 205
S N G IP+ +G+ L +LNL HN ++G+IP ++ L LDLS NKLDGRIP+
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 206 XXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC 255
N L G IP QF TF ++ N LCG PL RC
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 111/267 (41%), Gaps = 46/267 (17%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LD+++N +P L C L+ +++ N +S F + + ELK+L + SN+F
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 61 YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGA---F 117
GP+ P ++LQ + L+ N+FTG +P + + + +D Y GA F
Sbjct: 260 VGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY--GAVPPF 313
Query: 118 YNESITVVMK-------GHDFQLQKILVM--FRAMDFSSNRFHGEIPEVLGNFK------ 162
+ + + + +L M + +D S N F GE+PE L N
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 163 ---------------------SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 201
+L+ L L +N TG IP + N + L SL LSFN L G
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 202 IPEQXXXXXXXXXXXXXYNRLWGRIPR 228
IP N L G IP+
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 113/251 (45%), Gaps = 17/251 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLA-KCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNR 59
+L+ L L NK G +P L+ C L +++ N + P + GS L+ L L SN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 60 FYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQR-RLEYMGGAFY 118
F G L + + L+++DLS NEF+G LP E++ N+ L+ F
Sbjct: 330 FSGELPMDTL-LKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNFS 381
Query: 119 NESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 178
+ + + LQ++ + +N F G+IP L N L L+LS N L+G I
Sbjct: 382 GPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 179 PVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEND 238
P S +++ L L L N L+G IP++ +N L G IP G T N
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 239 SYIGNIHLCGE 249
+ N L GE
Sbjct: 495 ISLSNNRLTGE 505
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 10 NKLEGPLPI-SLAKCMKLEVVNVGNNMISDSFPCWLGSL-PELKILELRSNRFYGPLCKS 67
N G LP+ +L K L+V+++ N S P L +L L L+L SN F GP+ +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 68 NITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMK 127
P LQ + L +N FTG +P + E V Y+ G S+ + K
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL---VSLHLSFNYLSGTIP-SSLGSLSK 443
Query: 128 GHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 187
D +L N GEIP+ L K+L+ L L N LTG IP N T
Sbjct: 444 LRDLKLWL------------NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 188 LESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIP 227
L + LS N+L G IP+ N G IP
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 1 NLRSLDLNNNKLEGPLP--ISLAKCMKLEVVNVGNNMISDSFPCWLGS---LPELKILEL 55
+L SLDL+ N L GP+ SL C L+ +NV +N + FP + L L++L+L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 158
Query: 56 RSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQR--RLEYM 113
+N G ++ ++ G L G + +VD R LE++
Sbjct: 159 SANSISGA-------------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 114 GGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS 173
+ N S + G LQ +D S N+ G+ + LK+LN+S N
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQH-------LDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 174 LTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
G IP + +L+ L L+ NK G IP+
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPD 287
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 10 NKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNI 69
N L GP+P ++AK +L + + + +S + P +L + L L+ N G L S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 70 TFPFQALQIIDLSHNEFTGFLP------TRIFPGMEAMKNVDEQRRLEYMGGAFYNESIT 123
+ P L I N +G +P +++F M +N R + F N ++
Sbjct: 147 SLP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN----RLTGKIPPTFANLNLA 200
Query: 124 VVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT---GNIPV 180
V D S N G+ + G+ K+ + ++L+ NSL G + +
Sbjct: 201 FV------------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 181 SFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSY 240
S L LDL N++ G +P+ +N L G IP+G F+ +Y
Sbjct: 243 SKN----LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 241 IGNIHLCGEPL 251
N LCG PL
Sbjct: 299 ANNKCLCGSPL 309
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFP 41
NL LDL NN++ G LP L + L +NV N + P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL +DL+ N LEG + + +++ N ++ +G L L+LR+NR
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 61 YGPLCKSNITFPFQALQIIDLSHNEFTGFLP 91
YG L + F L +++S N G +P
Sbjct: 257 YGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 23/212 (10%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
N R L+L N ++ + LE++ + N++ LP L LEL NR
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 61 YGPLCKSNITFPFQALQIID------LSHNEFTGFLPTRIFPGMEAMKNVD--EQRRLEY 112
T P QA + + L +N +P+ F + +++ +D E +RLEY
Sbjct: 96 --------TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 113 MGGAFYNESITV------VMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKV 166
+ A + + + + D LV ++ S NR P SL+
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 167 LNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
L L H + +F+++ +LE L+LS N L
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 23/212 (10%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
N R L+L N ++ + LE++ + N++ LP L LEL NR
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 61 YGPLCKSNITFPFQALQIID------LSHNEFTGFLPTRIFPGMEAMKNVD--EQRRLEY 112
T P QA + + L +N +P+ F + +++ +D E +RLEY
Sbjct: 96 --------TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 113 MGGAFYNESITV------VMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKV 166
+ A + + + + D LV ++ S NR P SL+
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 167 LNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
L L H + +F+++ +LE L+LS N L
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 39/188 (20%)
Query: 47 LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLP-TRIFPGMEAMKNVD 105
LP L+ L+L N C S F +L+ +DLS F G + + F G+E ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 106 EQ----------------RRLEYM-----------GGAFYNESITVVMK--GHDFQ---L 133
Q R L Y+ G F S V+K G+ FQ L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 134 QKILVMFRAM---DFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
I R + D S + P + SL+VLN+SHN+ ++ + +L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 191 LDLSFNKL 198
LD S N +
Sbjct: 523 LDYSLNHI 530
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVG-NNMIS-DSFPCWLGSLPELKILELRSN 58
NL LDL+ +LE P + L+V+N+ NN S D+FP L L++L+ N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLN 528
Query: 59 RFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRL 110
+ FP +L ++L+ N+F + F ++ + +QR+L
Sbjct: 529 HIMTSKKQELQHFP-SSLAFLNLTQNDFACTCEHQSF-----LQWIKDQRQL 574
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 39/188 (20%)
Query: 47 LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLP-TRIFPGMEAMKNVD 105
LP L+ L+L N C S F +L+ +DLS F G + + F G+E ++++D
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEHLD 426
Query: 106 EQ----------------RRLEYM-----------GGAFYNESITVVMK--GHDFQ---L 133
Q R L Y+ G F S V+K G+ FQ L
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 134 QKILVMFRAM---DFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
I R + D S + P + SL+VLN+SHN+ ++ + +L+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 191 LDLSFNKL 198
LD S N +
Sbjct: 547 LDYSLNHI 554
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVG-NNMIS-DSFPCWLGSLPELKILELRSN 58
NL LDL+ +LE P + L+V+N+ NN S D+FP L L++L+ N
Sbjct: 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLN 552
Query: 59 RFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRL 110
+ FP +L ++L+ N+F + F ++ + +QR+L
Sbjct: 553 HIMTSKKQELQHFP-SSLAFLNLTQNDFACTCEHQSF-----LQWIKDQRQL 598
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 200
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
Query: 47 LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLP-TRIFPGMEAMKNVD 105
LP L+ L+L N C S F +L+ +DLS F G + + F G+E ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 106 EQ----------------RRLEYM-----------GGAFYNESITVVMK--GHDFQ---L 133
Q R L Y+ G F S V+K G+ FQ L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 134 QKILVMFRA---MDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
I R +D S + P + SL+VLN++ N L F+ +T+L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 191 LDLSFNKLDGRIP 203
+ L N D P
Sbjct: 523 IWLHTNPWDCSCP 535
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 154 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
+P+ L N+K L +++LS+N ++ SF NMT L +L LS+N+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 47 LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLP-TRIFPGMEAMKNVD 105
L +L L L SN C S F +L+ +DLS F G + + F G+E ++++D
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 106 EQ----------------RRLEYM-----------GGAFYNESITVVMK--GHDFQ---L 133
Q R L Y+ G F S V+K G+ FQ L
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 134 QKILVMFRAM---DFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
I R + D S + P + SL+VLN+SHN+ ++ + +L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 191 LDLSFNKL 198
LD S N +
Sbjct: 228 LDYSLNHI 235
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVG-NNMIS-DSFPCWLGSLPELKILELRSN 58
NL LDL+ +LE P + L+V+N+ NN S D+FP L L++L+ N
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLN 233
Query: 59 RFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRL 110
+ FP +L ++L+ N+F + F ++ + +QR+L
Sbjct: 234 HIMTSKKQELQHFP-SSLAFLNLTQNDFACTCEHQSF-----LQWIKDQRQL 279
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 46 SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVD 105
+LP L L+L N C S +L+ +DLS N + + F G+E ++++D
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLD 405
Query: 106 EQR----------------RLEYMGGAFYNESI-------------TVVMKGHDFQLQKI 136
Q +L Y+ ++ N I T+ M G+ F+ +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 137 LVMF------RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
+F +D S + V L++LN+SHN+L + + +L +
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 191 LDLSFNKLD 199
LD SFN+++
Sbjct: 526 LDCSFNRIE 534
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 158 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKL 198
+G +LK LN++HN + + +P F N+T L +DLS+N +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 46 SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVD 105
+LP L L+L N C S +L+ +DLS N + + F G+E ++++D
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLD 400
Query: 106 EQR----------------RLEYMGGAFYNESI-------------TVVMKGHDFQLQKI 136
Q +L Y+ ++ N I T+ M G+ F+ +
Sbjct: 401 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 460
Query: 137 LVMF------RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
+F +D S + V L++LN+SHN+L + + +L +
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 520
Query: 191 LDLSFNKLD 199
LD SFN+++
Sbjct: 521 LDCSFNRIE 529
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 158 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFN 196
+G +LK LN++HN + + +P F N+T L +DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN 58
NLR LDL++N+L LP L C +L+ +NM++ + P G+L L+ L + N
Sbjct: 271 NLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 153 EIPEVLGNFKSLKVLNLSHNSLTG 176
E+P + N +L+VL+LSHN LT
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS 284
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 20/176 (11%)
Query: 44 LGSLPELKI--LELRSNRFYGPLCKSNITFP-FQALQIIDLSHNEFTGFLPTRIFPGMEA 100
L L E+ + L L+ +RF S+ TF F LQ +DL+ G LP+ + G+
Sbjct: 245 LKGLCEMSVESLNLQEHRFSDI---SSTTFQCFTQLQELDLTATHLKG-LPSGM-KGLNL 299
Query: 101 MK----NVDEQRRLEYMGGAFYNESITVVMKGHDFQLQ------KILVMFRAMDFSSNRF 150
+K +V+ +L + A + + ++G+ +L + L + +D S N
Sbjct: 300 LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDI 359
Query: 151 HGE--IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
L N L+ LNLSHN G +F+ LE LDL+F +L P+
Sbjct: 360 EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 45 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 103
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 104 TVLDVSFNRL 113
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 188
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 189 ESLDLSFNKL 198
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 140 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF--ENMTALESLDLSFNK 197
F ++F+ N F + + K L+ L L N L V+ +NM++LE+LD+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 198 LDGR 201
L+
Sbjct: 415 LNSH 418
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 140 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199
R + S NR V + L+ L++SHN L +S M +L LDLSFN D
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196
L + + N+ V +L LNL+HN L F+ +T L LDLS+N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 197 KLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC 255
+L +PE Y +P G F+ + + I L P C
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCTC 221
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 26/179 (14%)
Query: 29 VNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTG 88
++ NN+++D+ G L EL+ L L+ N+ + +T ++LQ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 89 FLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMF----RAMD 144
DE++ G + +S+ + + I + +D
Sbjct: 388 ---------------YDEKK-----GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427
Query: 145 FSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 203
SN+ IP+ + ++L+ LN++ N L F+ +T+L+ + L N D P
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196
L R + S NR V + L+ L+LSHN L + +S L+ LDLSFN
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFN 100
Query: 197 KLDG 200
D
Sbjct: 101 AFDA 104
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 174 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 228
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK-NVDEQRRLEYMGGAF 117
G L L +DL++N+ + P + +K ++ + + G
Sbjct: 229 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG-- 280
Query: 118 YNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 177
L ++ + N+ P + N K+L L L N+++
Sbjct: 281 -------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 178 IPVSFENMTALESLDLSFNKL 198
PVS ++T L+ L S NK+
Sbjct: 320 SPVS--SLTKLQRLFFSNNKV 338
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 239 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 294
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 79 IDLSHNEFTGFLPTR-------IFPGMEAMKNVDEQRRLEYMGG-AFYNESITVVMKGHD 130
I+ S+N+ T P + I + ++ L + G +N IT D
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT------D 121
Query: 131 FQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
K L ++ SSN +I + G SL+ LN S N +T P++ N+T LE
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKPLA--NLTTLER 177
Query: 191 LDLSFNKL 198
LD+S NK+
Sbjct: 178 LDISSNKV 185
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 175 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK 102
G L L +DL++N+ + P + +K
Sbjct: 230 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 175 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK-NVDEQRRLEYMGGAF 117
G L L +DL++N+ + P + +K ++ + + G
Sbjct: 230 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG-- 281
Query: 118 YNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 177
L ++ + N+ P + N K+L L L N+++
Sbjct: 282 -------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 178 IPVSFENMTALESLDLSFNKL 198
PVS ++T L+ L S NK+
Sbjct: 321 SPVS--SLTKLQRLFFSNNKV 339
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 79 IDLSHNEFTGFLPTR-------IFPGMEAMKNVDEQRRLEYMGG-AFYNESITVVMKGHD 130
I+ S+N+ T P + I + ++ L + G +N IT D
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT------D 121
Query: 131 FQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
K L ++ SSN +I + G SL+ L+ S N +T P++ N+T LE
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPLA--NLTTLER 177
Query: 191 LDLSFNKL 198
LD+S NK+
Sbjct: 178 LDISSNKV 185
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 140 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199
R +D SSN H + + ++L+VL L +N + +FE+M L+ L LS N++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI- 148
Query: 200 GRIP 203
R P
Sbjct: 149 SRFP 152
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN 58
N++ LDL+ N L LA KLE++N+ +N++ ++ L SL L+ L+L +N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 178 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 232
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK-NVDEQRRLEYMGGAF 117
G L L +DL++N+ + P + +K ++ + + G
Sbjct: 233 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG-- 284
Query: 118 YNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 177
L ++ + N+ P + N K+L L L N+++
Sbjct: 285 -------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 178 IPVSFENMTALESLDLSFNKL 198
PVS ++T L+ L + NK+
Sbjct: 324 SPVS--SLTKLQRLFFANNKV 342
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 243 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 298
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 175 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK 102
G L L +DL++N+ + P + +K
Sbjct: 230 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 79 IDLSHNEFTGFLPTR-------IFPGMEAMKNVDEQRRLEYMGG-AFYNESITVVMKGHD 130
I+ S+N+ T P + I + ++ L + G +N IT D
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT------D 121
Query: 131 FQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
K L ++ SSN +I + G SL+ L+ S N +T P++ N+T LE
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPLA--NLTTLER 177
Query: 191 LDLSFNKL 198
LD+S NK+
Sbjct: 178 LDISSNKV 185
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 174 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 228
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK 102
G L L +DL++N+ + P + +K
Sbjct: 229 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 239 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 294
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN 58
N++ LDL+ N L LA KLE++N+ +N++ ++ L SL L+ L+L +N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 2 LRSLDLNNNKLEGPLPIS-LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L LD+++NK+ IS LAK LE + NN ISD P LG L L L L N+
Sbjct: 179 LERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233
Query: 61 --YGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK 102
G L L +DL++N+ + P + +K
Sbjct: 234 KDIGTLAS------LTNLTDLDLANNQISNLAPLSGLTKLTELK 271
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
NL LDL NN++ P+S KL + +G N IS+ P L L L LEL N+
Sbjct: 244 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 37/203 (18%)
Query: 25 KLEVVNVG-NNMISDSFPCWLGSLPELKILELRSNRFYG--PLCKSNITFPFQALQIIDL 81
K++++ +G NN+ + L +L LE N+ G P S I L ++L
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-----KLASLNL 360
Query: 82 SHNEFTGFLPTRIFPGMEAMKNVD-EQRRLEYMGGAFYNESITVVMKGHDFQLQKIL--- 137
++N+ T +P E ++N+ +L+Y+ F +S++V DF +I
Sbjct: 361 AYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV-XSAIDFSYNEIGSVD 418
Query: 138 --------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS-- 181
+ +++ S+N+ E+ L +NL N LT IP +
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSL 477
Query: 182 ------FENMTALESLDLSFNKL 198
F+N L S+DL FNKL
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKL 500
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 140 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199
+++F SN+ + G LK LNL+ N L F+ +T+L+ + L N D
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 231
Query: 200 GRIP 203
P
Sbjct: 232 CSCP 235
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 38/194 (19%)
Query: 43 WLGSLPELKILELRSNRFYGPLCKSNI-TFPFQALQIIDLSHNEFTGF------------ 89
WLG+ + L S F G LC ++ + Q + DLS + F F
Sbjct: 230 WLGTFEDTDDQYLTSATFEG-LCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH 288
Query: 90 ---LPTRIFPGMEAMK----NVDEQRRLEYMGGAFYNESITVVMKGHDFQLQ------KI 136
LP+ I GM ++K N + +L + A + + +KG+ +L +
Sbjct: 289 LNGLPSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 137 LVMFRAMDFSSNRFHGEIPEV------LGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 190
L + +D S H +I L N + L+ LNLS+N G +F+ LE
Sbjct: 348 LENLQKLDLS----HSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 191 LDLSFNKLDGRIPE 204
LD++F L + P
Sbjct: 404 LDVAFTHLHVKAPH 417
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 41/215 (19%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGN-NMISDSFPCWLG-------SLPELKI 52
NL+ LDL+++ +E + C L++ N+ + ++ S+ LG P+L++
Sbjct: 350 NLQKLDLSHSDIEA------SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 53 LELRSNRFYGPLCKSNITFPFQ---ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRR 109
L++ + S PFQ L++++LSH L T + + + R
Sbjct: 404 LDVAFTHLHVKAPHS----PFQNLHLLRVLNLSH----CLLDTS---NQHLLAGLQDLRH 452
Query: 110 LEYMGGAFYNESITVVMKGHDFQLQKILVMFRA--MDFSSNRFHGEIPEVLGNFKSLKVL 167
L G +F + SI+ +IL++ + FHG +++ L
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHL 504
Query: 168 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 202
+LSHNSLTG+ S + ++ L+ L L+ + RI
Sbjct: 505 DLSHNSLTGD---SMDALSHLKGLYLNMASNNIRI 536
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196
LK LNL N ++ +P SFE++ +L SL+L+ N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 141 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
R +D S V K LKVLNL++N + +F + L+ L+LS+N L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 48/236 (20%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
+L+ L+L NK+ + L+V+N+ N++ + + LP++ ++L+ N
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 61 YGPLCKSNITFPF-QALQIIDLSHNEFTG--FLPT--RIF---------PGMEAMKNVDE 106
+ TF F + LQ +DL N T F+P+ IF P + N+
Sbjct: 351 ---AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 107 --QRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIP--------- 155
+ RLE + ++ +++ Q+ IL R S ++ E P
Sbjct: 408 LSENRLENLDILYF------LLRVPHLQIL-ILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 156 -------------EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
+V L+VL L+HN L P F ++TAL L L+ N+L
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMIS----DSFPCWLGSLPELKILELRS 57
++SLDL+NN++ L +C+ L+ + + +N I+ DSF SL L+ L+L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLDLSY 109
Query: 58 NRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK-----NVD---EQRR 109
N Y S+ P +L ++L N + T +F + ++ N+D + +R
Sbjct: 110 N--YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 110 LEYMGGAFYNE 120
++ G F E
Sbjct: 168 KDFAGLTFLEE 178
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 141 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
+++D S+NR L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 248 GEPLTVRCSNDGLPEAPPLASSDHDETASRFDWKMAKMGYASGLVI 293
GEP+T++C DG PE +H + S +KM + LVI
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 164 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
N+ L+L +N+L + + +L ++VG N IS P LP LK+L L+ N
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 164 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
N+ L+L +N+L + + +L ++VG N IS P LP LK+L L+ N
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 153 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
IP+ L + ++ VLNL+HN L P +F + L LD FN + PE
Sbjct: 18 HIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 164 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 204
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
N+ L+L +N+L + + +L ++VG N IS P LP LK+L L+ N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMIS----DSFPCWLGSLPELKILELRS 57
++SLDL+NN++ L +C+ L+ + + +N I+ DSF SL L+ L+L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLDLSY 83
Query: 58 NRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMK-----NVD---EQRR 109
N Y S+ P +L ++L N + T +F + ++ N+D + +R
Sbjct: 84 N--YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 141
Query: 110 LEYMGGAFYNE 120
++ G F E
Sbjct: 142 KDFAGLTFLEE 152
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 141 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
+++D S+NR L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 43/197 (21%)
Query: 24 MKLEVVNVGN----NMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79
M +E +N+ N+ S++F C+ G L EL + + L L+ +
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLSELPSGL------VGLSTLKKL 306
Query: 80 DLSHNEFTGF--LPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKIL 137
LS N+F + FP + + +RLE G N L
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN-----------------L 349
Query: 138 VMFRAMDFSSNRFHGEIPEV------LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 191
R +D S H +I L N L+ LNLS+N +F+ LE L
Sbjct: 350 ENLRELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 192 DLSFNKL---DGRIPEQ 205
DL+F +L D + P Q
Sbjct: 406 DLAFTRLKVKDAQSPFQ 422
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 62 GPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAM--------KNVDEQRRLEYM 113
GP + P Q L + S + F P ++FPG+E + + VD E
Sbjct: 74 GPKWGTGSVRPEQGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELT 133
Query: 114 GGAFYNE 120
GG ++ E
Sbjct: 134 GGIYFGE 140
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 197
++L +L L N+L G +F +T LE LDLS N
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 25/152 (16%)
Query: 72 PFQ--ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MGGAF----YNESITV 124
PF+ ++ +DLS N F + R F + K Y MG +F + +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 125 VMKG--------HDFQLQKILVMFRA----------MDFSSNRFHGEIPEVLGNFKSLKV 166
KG D KI + ++ + + N + L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 167 LNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
LNLS N L FEN+ LE LDLS+N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 141 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198
R +D NR + +F L+ L L+ N ++ P +F N+ L +L L N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60
L SL L NNK+ L++ KL+ +++ +N ISD P L L +L+ L L N
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,604,746
Number of Sequences: 62578
Number of extensions: 386645
Number of successful extensions: 1120
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 256
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)