Query 044710
Match_columns 331
No_of_seqs 386 out of 3454
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-31 4.6E-36 268.4 17.9 245 3-250 359-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.6E-26 7.8E-31 230.6 16.2 226 1-229 141-375 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.4E-29 194.1 -0.5 239 2-244 151-427 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.8E-23 3.9E-28 186.5 2.6 249 1-252 174-458 (873)
5 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.5E-26 176.6 0.4 242 2-251 105-380 (1255)
6 KOG0472 Leucine-rich repeat pr 99.8 1E-21 2.2E-26 168.3 -7.5 231 2-244 70-308 (565)
7 KOG0617 Ras suppressor protein 99.8 6.7E-21 1.4E-25 145.6 -3.1 158 3-208 36-194 (264)
8 KOG4237 Extracellular matrix p 99.8 2.9E-20 6.2E-25 159.0 -1.1 245 3-250 70-363 (498)
9 KOG0444 Cytoskeletal regulator 99.8 3.1E-20 6.7E-25 167.4 -1.5 219 2-228 57-285 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 6.5E-20 1.4E-24 157.3 -3.3 98 2-108 208-306 (565)
11 KOG4237 Extracellular matrix p 99.7 1.9E-19 4.1E-24 154.1 -0.7 220 1-223 92-359 (498)
12 KOG0618 Serine/threonine phosp 99.7 2.8E-19 6E-24 167.4 -0.1 237 1-246 242-489 (1081)
13 PLN03150 hypothetical protein; 99.7 6.2E-17 1.3E-21 154.6 11.0 118 139-256 419-538 (623)
14 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.3E-24 138.2 -6.9 162 20-228 29-191 (264)
15 PRK15387 E3 ubiquitin-protein 99.7 2.7E-16 5.8E-21 150.6 11.3 83 137-228 381-463 (788)
16 PLN03210 Resistant to P. syrin 99.7 8.9E-16 1.9E-20 156.5 14.9 201 2-228 613-843 (1153)
17 PRK15370 E3 ubiquitin-protein 99.6 1.1E-15 2.3E-20 147.2 11.7 203 1-228 200-405 (754)
18 PRK15370 E3 ubiquitin-protein 99.6 8.6E-16 1.9E-20 147.8 10.9 202 2-228 180-384 (754)
19 PLN03210 Resistant to P. syrin 99.6 7E-15 1.5E-19 150.0 16.8 209 1-219 635-878 (1153)
20 PRK15387 E3 ubiquitin-protein 99.6 6.1E-15 1.3E-19 141.4 11.4 52 3-61 204-255 (788)
21 cd00116 LRR_RI Leucine-rich re 99.6 2.5E-16 5.5E-21 139.5 0.9 210 1-223 52-291 (319)
22 KOG0618 Serine/threonine phosp 99.6 1.1E-16 2.4E-21 150.2 -2.9 199 1-221 265-487 (1081)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-15 3.8E-20 134.1 3.0 209 2-223 25-263 (319)
24 KOG0532 Leucine-rich repeat (L 99.4 2.6E-15 5.7E-20 134.4 -4.0 169 4-199 79-247 (722)
25 COG4886 Leucine-rich repeat (L 99.4 2.5E-13 5.4E-18 124.0 6.5 197 5-229 98-296 (394)
26 PLN03150 hypothetical protein; 99.3 3.9E-12 8.5E-17 121.8 7.5 91 2-94 420-510 (623)
27 COG4886 Leucine-rich repeat (L 99.3 7.6E-12 1.6E-16 114.2 7.0 192 28-246 97-290 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 5.2E-13 1.1E-17 119.9 -1.0 168 2-197 100-271 (722)
29 KOG3207 Beta-tubulin folding c 99.2 2.5E-12 5.5E-17 112.1 2.5 205 1-223 122-339 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 4.6E-11 9.9E-16 94.9 5.5 80 137-217 63-147 (175)
31 PF14580 LRR_9: Leucine-rich r 99.1 2.3E-11 5E-16 96.6 3.4 130 19-194 14-148 (175)
32 PF13855 LRR_8: Leucine rich r 99.1 4.5E-11 9.7E-16 78.3 3.3 60 1-60 2-61 (61)
33 KOG3207 Beta-tubulin folding c 99.1 8E-12 1.7E-16 109.1 -0.9 194 21-229 118-319 (505)
34 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.8E-16 102.4 -0.0 188 15-225 205-414 (490)
35 PF13855 LRR_8: Leucine rich r 99.0 1.2E-10 2.6E-15 76.3 2.1 60 163-222 2-61 (61)
36 KOG1909 Ran GTPase-activating 99.0 3E-11 6.6E-16 102.7 -1.6 87 137-223 184-283 (382)
37 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 97.9 0.6 82 137-223 306-387 (490)
38 KOG1909 Ran GTPase-activating 98.9 1.8E-10 4E-15 98.0 1.0 221 2-223 32-311 (382)
39 KOG0531 Protein phosphatase 1, 98.8 7.9E-10 1.7E-14 101.4 -0.2 98 3-109 75-172 (414)
40 KOG2120 SCF ubiquitin ligase, 98.8 1.5E-10 3.2E-15 96.7 -5.8 178 2-220 187-373 (419)
41 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.4E-14 100.4 -1.7 176 22-223 70-268 (414)
42 KOG4579 Leucine-rich repeat (L 98.6 1.6E-09 3.4E-14 80.5 -4.2 59 139-199 78-136 (177)
43 KOG1859 Leucine-rich repeat pr 98.5 4.1E-09 8.9E-14 97.9 -3.7 109 135-248 184-294 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.4E-12 92.8 6.1 103 2-108 547-651 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.4 5.3E-08 1.2E-12 80.7 0.9 86 2-87 32-133 (388)
46 KOG1859 Leucine-rich repeat pr 98.4 7E-09 1.5E-13 96.4 -5.7 179 17-223 102-292 (1096)
47 PF12799 LRR_4: Leucine Rich r 98.3 1.2E-06 2.6E-11 52.7 3.5 35 2-37 3-37 (44)
48 KOG2982 Uncharacterized conser 98.2 5.3E-07 1.2E-11 75.8 2.6 195 22-218 69-287 (418)
49 KOG4658 Apoptotic ATPase [Sign 98.2 9.3E-07 2E-11 87.4 4.0 100 3-108 526-627 (889)
50 KOG2982 Uncharacterized conser 98.2 1.7E-06 3.7E-11 72.8 4.4 194 20-228 41-267 (418)
51 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.5E-12 69.9 -1.8 89 137-229 52-141 (177)
52 PF12799 LRR_4: Leucine Rich r 98.1 1.9E-06 4.1E-11 51.8 2.7 34 164-198 3-36 (44)
53 PRK15386 type III secretion pr 98.1 2E-05 4.3E-10 70.7 8.9 63 20-91 48-111 (426)
54 KOG2120 SCF ubiquitin ligase, 98.0 4.6E-07 1E-11 76.2 -2.3 157 1-196 211-373 (419)
55 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 63.1 5.3 78 4-87 23-101 (233)
56 PRK15386 type III secretion pr 97.9 9.5E-05 2.1E-09 66.4 9.3 32 162-196 156-187 (426)
57 COG5238 RNA1 Ran GTPase-activa 97.7 0.0001 2.2E-09 61.6 5.9 162 19-200 87-286 (388)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 58.8 4.4 83 2-87 44-126 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 5E-05 1.1E-09 73.5 2.4 135 74-224 122-264 (699)
60 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 61.2 2.2 68 16-87 35-104 (260)
61 KOG2739 Leucine-rich acidic nu 97.3 0.0001 2.2E-09 61.2 1.2 83 2-88 45-130 (260)
62 PF13306 LRR_5: Leucine rich r 97.2 0.001 2.3E-08 50.2 6.4 63 17-83 5-67 (129)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0016 3.5E-08 49.1 6.5 123 42-212 6-128 (129)
64 KOG3665 ZYG-1-like serine/thre 97.1 0.00022 4.7E-09 69.2 1.5 79 24-106 122-202 (699)
65 PF00560 LRR_1: Leucine Rich R 96.8 0.00044 9.6E-09 34.6 0.8 21 1-22 1-21 (22)
66 KOG2123 Uncharacterized conser 96.8 4.5E-05 9.7E-10 63.9 -4.7 99 2-105 21-123 (388)
67 KOG2123 Uncharacterized conser 96.7 8.3E-05 1.8E-09 62.3 -4.1 59 23-87 18-76 (388)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.6E-08 32.5 1.0 21 25-46 1-21 (22)
69 KOG4308 LRR-containing protein 95.9 2.9E-05 6.4E-10 71.9 -12.0 87 137-223 203-303 (478)
70 PF13504 LRR_7: Leucine rich r 94.3 0.028 6.2E-07 26.0 1.3 13 75-87 2-14 (17)
71 KOG4308 LRR-containing protein 94.3 0.0005 1.1E-08 63.8 -9.1 189 2-201 89-305 (478)
72 smart00370 LRR Leucine-rich re 94.1 0.041 9E-07 28.5 1.9 22 73-95 1-22 (26)
73 smart00369 LRR_TYP Leucine-ric 94.1 0.041 9E-07 28.5 1.9 22 73-95 1-22 (26)
74 smart00369 LRR_TYP Leucine-ric 92.6 0.13 2.8E-06 26.6 2.2 18 24-41 2-19 (26)
75 smart00370 LRR Leucine-rich re 92.6 0.13 2.8E-06 26.6 2.2 18 24-41 2-19 (26)
76 KOG0473 Leucine-rich repeat pr 91.7 0.0039 8.4E-08 51.3 -6.4 83 138-223 42-124 (326)
77 KOG1947 Leucine rich repeat pr 91.0 0.025 5.5E-07 52.8 -2.8 63 23-85 187-254 (482)
78 PF13516 LRR_6: Leucine Rich r 90.8 0.078 1.7E-06 26.8 0.2 16 24-39 2-17 (24)
79 KOG3864 Uncharacterized conser 90.5 0.03 6.6E-07 45.1 -2.3 81 139-219 102-185 (221)
80 KOG0473 Leucine-rich repeat pr 89.7 0.0087 1.9E-07 49.3 -6.0 85 18-108 36-120 (326)
81 PF15176 LRR19-TM: Leucine-ric 87.9 0.11 2.4E-06 36.4 -0.7 41 277-320 14-54 (102)
82 smart00365 LRR_SD22 Leucine-ri 84.9 0.85 1.9E-05 23.7 1.8 14 186-199 2-15 (26)
83 KOG3864 Uncharacterized conser 83.2 0.2 4.3E-06 40.6 -1.5 62 24-85 101-162 (221)
84 smart00368 LRR_RI Leucine rich 80.8 1.4 3.1E-05 23.2 1.8 14 186-199 2-15 (28)
85 PF04478 Mid2: Mid2 like cell 80.7 1.2 2.6E-05 34.1 2.0 6 285-290 52-57 (154)
86 smart00364 LRR_BAC Leucine-ric 79.2 1.4 3.1E-05 22.8 1.4 18 74-92 2-19 (26)
87 KOG1947 Leucine rich repeat pr 78.7 1.5 3.3E-05 40.8 2.5 88 135-222 211-307 (482)
88 KOG4341 F-box protein containi 73.5 1.2 2.6E-05 40.2 0.3 160 23-221 267-437 (483)
89 PF04478 Mid2: Mid2 like cell 68.2 7 0.00015 30.1 3.3 24 280-303 51-74 (154)
90 TIGR00985 3a0801s04tom mitocho 66.6 4.2 9.2E-05 31.3 1.9 24 285-308 9-32 (148)
91 KOG4056 Translocase of outer m 65.6 5.5 0.00012 30.0 2.3 40 286-330 12-51 (143)
92 KOG4341 F-box protein containi 65.1 1.1 2.5E-05 40.4 -1.6 87 137-223 319-414 (483)
93 PF01034 Syndecan: Syndecan do 64.3 2.4 5.1E-05 27.3 0.1 10 286-295 17-26 (64)
94 KOG3763 mRNA export factor TAP 63.6 4.5 9.8E-05 38.0 1.8 64 23-88 217-284 (585)
95 PF01102 Glycophorin_A: Glycop 59.3 1.4 3E-05 32.7 -1.8 17 284-300 66-82 (122)
96 PF00558 Vpu: Vpu protein; In 59.1 5.4 0.00012 27.1 1.1 12 316-327 37-48 (81)
97 PTZ00382 Variant-specific surf 52.0 6.8 0.00015 27.8 0.8 6 285-290 69-74 (96)
98 PF04971 Lysis_S: Lysis protei 50.2 8.9 0.00019 25.0 1.0 6 308-313 52-57 (68)
99 PF12191 stn_TNFRSF12A: Tumour 49.8 9.9 0.00021 28.1 1.3 10 293-302 92-101 (129)
100 KOG3763 mRNA export factor TAP 49.5 11 0.00023 35.6 1.8 60 2-62 220-284 (585)
101 PF01102 Glycophorin_A: Glycop 49.4 3.5 7.6E-05 30.6 -1.0 23 280-302 66-88 (122)
102 PF13908 Shisa: Wnt and FGF in 48.8 24 0.00051 28.3 3.6 11 282-292 79-89 (179)
103 TIGR00864 PCC polycystin catio 47.9 14 0.0003 41.8 2.6 32 6-37 1-32 (2740)
104 PF06697 DUF1191: Protein of u 47.7 32 0.00069 29.6 4.2 15 284-298 216-230 (278)
105 TIGR00864 PCC polycystin catio 47.3 13 0.00028 42.0 2.3 32 30-61 1-32 (2740)
106 PF08374 Protocadherin: Protoc 41.6 23 0.0005 29.0 2.4 7 284-290 40-46 (221)
107 smart00367 LRR_CC Leucine-rich 40.8 20 0.00043 18.2 1.3 12 24-35 2-13 (26)
108 COG3105 Uncharacterized protei 40.4 5.1 0.00011 29.7 -1.3 17 287-303 11-27 (138)
109 PF14575 EphA2_TM: Ephrin type 37.8 12 0.00025 25.2 0.2 7 287-293 6-12 (75)
110 PF11980 DUF3481: Domain of un 37.7 11 0.00024 25.6 0.0 31 279-309 15-45 (87)
111 PRK11677 hypothetical protein; 36.3 6.8 0.00015 29.7 -1.3 16 288-303 7-22 (134)
112 PF04689 S1FA: DNA binding pro 36.0 45 0.00098 21.4 2.5 13 317-329 50-62 (69)
113 PF11770 GAPT: GRB2-binding ad 33.6 14 0.00031 28.2 0.1 8 305-312 33-40 (158)
114 PF14610 DUF4448: Protein of u 33.2 31 0.00068 27.8 2.0 25 279-303 156-180 (189)
115 PF14991 MLANA: Protein melan- 32.1 13 0.00028 27.0 -0.4 7 309-315 52-58 (118)
116 PF06295 DUF1043: Protein of u 31.9 22 0.00048 26.7 0.9 15 289-303 4-18 (128)
117 PF06305 DUF1049: Protein of u 28.8 18 0.00039 23.5 -0.1 14 289-302 26-39 (68)
118 PF05795 Plasmodium_Vir: Plasm 27.7 51 0.0011 29.3 2.6 21 292-313 291-311 (354)
119 PF05393 Hum_adeno_E3A: Human 27.5 23 0.0005 24.4 0.2 18 286-303 38-55 (94)
120 TIGR00540 hemY_coli hemY prote 26.5 28 0.00061 32.0 0.7 9 312-320 67-75 (409)
121 PF07204 Orthoreo_P10: Orthore 25.9 31 0.00067 24.1 0.7 31 279-312 41-71 (98)
122 PF03302 VSP: Giardia variant- 24.5 44 0.00095 30.7 1.6 17 285-301 372-388 (397)
123 KOG4242 Predicted myosin-I-bin 24.2 1.6E+02 0.0035 27.6 5.0 70 20-91 296-371 (553)
124 PF05808 Podoplanin: Podoplani 24.2 25 0.00055 27.4 0.0 10 284-293 131-140 (162)
125 PF02064 MAS20: MAS20 protein 23.5 27 0.00058 26.0 0.0 21 289-309 3-23 (121)
126 PF15345 TMEM51: Transmembrane 22.6 2.1E+02 0.0046 23.9 4.9 9 284-292 62-70 (233)
127 PF15179 Myc_target_1: Myc tar 22.2 10 0.00022 30.1 -2.5 19 280-298 18-36 (197)
128 PF02439 Adeno_E3_CR2: Adenovi 21.8 25 0.00053 20.1 -0.4 10 286-295 7-16 (38)
129 PF03672 UPF0154: Uncharacteri 21.2 31 0.00068 22.3 -0.0 17 287-303 3-19 (64)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.1e-31 Score=268.44 Aligned_cols=245 Identities=31% Similarity=0.484 Sum_probs=171.7
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.|++++|++++.+|..+..+.+|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+ ..+++|++|+++
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls 436 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDIS 436 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECc
Confidence 344444444444444444444444444444444444445555555556666666666655555544 456666666666
Q ss_pred CCCCCCCCCccccCCccccccccccccccc--cCCcc---ccceeEEE---EcCchhhHHHHhccCCEEEcCCCcCCCCC
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRRLEY--MGGAF---YNESITVV---MKGHDFQLQKILVMFRAMDFSSNRFHGEI 154 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~--~~~~~---~~~~~~~~---~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 154 (331)
+|.+++.+|.. +..+++|+.|++..|... ....+ ....+.+. +.+..+.....+++|+.|++++|.+.+.+
T Consensus 437 ~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 437 NNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred CCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 66666555543 445666666666554311 11111 11111111 11223334456889999999999999999
Q ss_pred chhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCc
Q 044710 155 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNT 234 (331)
Q Consensus 155 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~ 234 (331)
|..+..+++|++|++++|.+++.+|..+..+++|++|||++|++++.+|..+..+++|+.+++++|+++|.+|...++.+
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCcCCC
Q 044710 235 FENDSYIGNIHLCGEP 250 (331)
Q Consensus 235 ~~~~~~~~n~~lc~~~ 250 (331)
+....+.||+.+|+.+
T Consensus 596 ~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 596 INASAVAGNIDLCGGD 611 (968)
T ss_pred cChhhhcCCccccCCc
Confidence 9999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=3.6e-26 Score=230.61 Aligned_cols=226 Identities=31% Similarity=0.465 Sum_probs=173.6
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++.+|..+.++++|++|++++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+ ..+++|++|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL--GQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH--cCcCCccEEE
Confidence 36777777777777778888888888888888888887888888888888888888888877777766 6778888888
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc--ccC----CccccceeEEEE---cCchhhHHHHhccCCEEEcCCCcCC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE--YMG----GAFYNESITVVM---KGHDFQLQKILVMFRAMDFSSNRFH 151 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~--~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~n~l~ 151 (331)
+++|.+.+.+|.. +..+++|+.|++..+.. ... .......+.+.. .+..+.....+.+|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 8888888777765 67788888888776531 111 111122222211 1222333455788889999999988
Q ss_pred CCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 152 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 152 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 888888888999999999999998888888888999999999999998888888888899999999999998888864
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-24 Score=194.08 Aligned_cols=239 Identities=26% Similarity=0.311 Sum_probs=119.5
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|+.||||.|.|+.....+|..-.++++|+|++|+|+....+.|..+.+|.+|.|++|+++...+..+ ..+++|+.|+|
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F--k~L~~L~~LdL 228 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF--KRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh--hhcchhhhhhc
Confidence 4556666666664444455555566666666666665555556666666666666666654322222 44566666666
Q ss_pred cCCCCCCCCCccccCCcccccccccccccc--ccCCccccc----eeEEEEc------------------------C---
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLE--YMGGAFYNE----SITVVMK------------------------G--- 128 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~--~~~~~~~~~----~~~~~~~------------------------~--- 128 (331)
..|.+. ......|.++++|+.+.+.+|-. .-.|.|+.. .+.+..+ .
T Consensus 229 nrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 229 NRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 666554 33333355566665555554421 111222211 1111111 1
Q ss_pred chhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcc---c
Q 044710 129 HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE---Q 205 (331)
Q Consensus 129 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~---~ 205 (331)
...+.......|++|+|+.|+++..-+..|..+..|++|+|++|.++......|..+++|+.|||++|.|+..+.+ .
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 1111222244555555555555544444555555555555555555544444555556666666666665544333 3
Q ss_pred ccCCCCCCeEEcccCCCcccCCCC--CCCCccccccccCCc
Q 044710 206 LLSVTALALLNLSYNRLWGRIPRG--NQFNTFENDSYIGNI 244 (331)
Q Consensus 206 l~~l~~L~~L~ls~N~lsg~ip~~--~~~~~~~~~~~~~n~ 244 (331)
|..+++|+.|++.+|++. .||.. ..+..++.+...+|+
T Consensus 388 f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hccchhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence 455666666666666665 44432 123344444454553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-23 Score=186.45 Aligned_cols=249 Identities=21% Similarity=0.248 Sum_probs=182.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|.|+......|.++.+|.+|.|+.|+++...+..|.+|++|+.|+|..|+|... ....|.++++|+.|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv--e~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV--EGLTFQGLPSLQNLK 251 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee--hhhhhcCchhhhhhh
Confidence 578999999999988889999999999999999999988888898899999999999988532 222335555555555
Q ss_pred ccCCCCCCCCCccccCCcccc------------------------cccccccccc---ccCC-cc--ccceeEEE---Ec
Q 044710 81 LSHNEFTGFLPTRIFPGMEAM------------------------KNVDEQRRLE---YMGG-AF--YNESITVV---MK 127 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L------------------------~~l~l~~~~~---~~~~-~~--~~~~~~~~---~~ 127 (331)
+..|++. .+.+..|-++.++ +.|+++.|.. ...+ .+ ....+.+. +.
T Consensus 252 lqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 5555554 4444444444444 4444444321 0000 01 11122222 22
Q ss_pred CchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCc---ccccCCCCCcEEeCCCCcCCCCCcc
Q 044710 128 GHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP---VSFENMTALESLDLSFNKLDGRIPE 204 (331)
Q Consensus 128 ~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~~ 204 (331)
..+...+..+..|++|.|++|.++......|..+++|++|||++|.+++.+. ..|..+++|+.|+|.+|+|......
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 3445566778999999999999997777789999999999999999987654 4678899999999999999977777
Q ss_pred cccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCcCCCCC
Q 044710 205 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 252 (331)
Q Consensus 205 ~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc~~~~~ 252 (331)
+|.++++|++|||.+|.+...-|....-..+..+.+..-.++|+|.+.
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 999999999999999999866665544345556666666788887543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.1e-21 Score=176.60 Aligned_cols=242 Identities=25% Similarity=0.298 Sum_probs=136.2
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|+.||||+|++. +.|..+...+++-+|+||+|.|..+.-..|.++.-|-+||||+|++.. +|+.. ..+..|++|+|
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~--RRL~~LqtL~L 180 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQI--RRLSMLQTLKL 180 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHH--HHHhhhhhhhc
Confidence 456677777776 566666666677777777777764433445566667777777777653 34443 55666777777
Q ss_pred cCCCCCCCCCccccCCcccccccccccccccc-------CCccccceeEEEEcC--chhhHHHHhccCCEEEcCCCcCCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYM-------GGAFYNESITVVMKG--HDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
++|.+. ..--..++.+++|+.|.+++..... .+........+.-+. ..++....+.+|+.|+||+|.|+
T Consensus 181 s~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it- 258 (1255)
T KOG0444|consen 181 SNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT- 258 (1255)
T ss_pred CCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-
Confidence 777665 2222224455555555554422111 111111111111111 12333344666777777777766
Q ss_pred CCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCC------------------------CCcccccC
Q 044710 153 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG------------------------RIPEQLLS 208 (331)
Q Consensus 153 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~l~~ 208 (331)
++....+.+.+|++|++|+|+++ .+|.++.++++|+.|.+.+|+++- ..|+.+..
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 55555556666667777777766 567777777777777777776642 33444555
Q ss_pred CCCCCeEEcccCCCcccCCCCCCC-CccccccccCCcCCcCCCC
Q 044710 209 VTALALLNLSYNRLWGRIPRGNQF-NTFENDSYIGNIHLCGEPL 251 (331)
Q Consensus 209 l~~L~~L~ls~N~lsg~ip~~~~~-~~~~~~~~~~n~~lc~~~~ 251 (331)
|..|+.|.|++|.+- ++|...++ ..+..+....||.+..+|.
T Consensus 338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 555566666666654 45555443 2345556667777665543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1e-21 Score=168.27 Aligned_cols=231 Identities=22% Similarity=0.275 Sum_probs=158.5
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
+++|++.+|+++ ..|.+++.+.+++.++.++|.++ .+|..+..+.+|..|+.+.|.+.. +++.+ +.+..+..++.
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i--~~~~~l~dl~~ 144 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSI--GRLLDLEDLDA 144 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchH--HHHhhhhhhhc
Confidence 567788888887 57778888888888888888877 566677777788888888887764 45554 56667777777
Q ss_pred cCCCCCCCCCccccCCccccccccccccc-cccCCcc----ccceeEEEE--cCchhhHHHHhccCCEEEcCCCcCCCCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAF----YNESITVVM--KGHDFQLQKILVMFRAMDFSSNRFHGEI 154 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 154 (331)
.+|+++ ..|++ +..+.++..+++..+. ..+.... ....+.... -..-+.....+..|.-|++..|++. .+
T Consensus 145 ~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cC
Confidence 777777 66665 3445555555443322 1111000 000000000 0111222234667777888888887 67
Q ss_pred chhhhCCCCCCEEEccCcccccCCccc-ccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCC
Q 044710 155 PEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFN 233 (331)
Q Consensus 155 p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~ 233 (331)
| .|+++..|++++++.|+|. .+|.. ..+++++..|||.+|+++ +.|+.+.-+.+|.+||+|+|.+++..++...+
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl- 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL- 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence 7 6788888888888888888 55544 458999999999999998 78899999999999999999999776665555
Q ss_pred ccccccccCCc
Q 044710 234 TFENDSYIGNI 244 (331)
Q Consensus 234 ~~~~~~~~~n~ 244 (331)
.+..+...|||
T Consensus 298 hL~~L~leGNP 308 (565)
T KOG0472|consen 298 HLKFLALEGNP 308 (565)
T ss_pred eeeehhhcCCc
Confidence 66777778886
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=6.7e-21 Score=145.55 Aligned_cols=158 Identities=33% Similarity=0.563 Sum_probs=100.3
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.|-||+|+++ .+|..++.+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++. ..|..+ +.++.|+.||++
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levldlt 110 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVLDLT 110 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhhhcc
Confidence 44566666666 45556666666666666666665 45556666666666666666664 345444 556666666666
Q ss_pred CCCCCC-CCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 83 HNEFTG-FLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 83 ~n~l~~-~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
+|++.. .+|..+| .+..|+.|++++|++. .+|..++++
T Consensus 111 ynnl~e~~lpgnff----------------------------------------~m~tlralyl~dndfe-~lp~dvg~l 149 (264)
T KOG0617|consen 111 YNNLNENSLPGNFF----------------------------------------YMTTLRALYLGDNDFE-ILPPDVGKL 149 (264)
T ss_pred ccccccccCCcchh----------------------------------------HHHHHHHHHhcCCCcc-cCChhhhhh
Confidence 666642 2333321 1455566777777776 677777777
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccC
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 208 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 208 (331)
++|+.|.+..|.+- ..|..++.++.|++|.+.+|+++ .+|..+++
T Consensus 150 t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 150 TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred cceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 77777777777776 56777777777777777777776 44444443
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=2.9e-20 Score=159.05 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=160.2
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEee-cccccccCCCCCCCcCCCCccEEEc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELR-SNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
+.|+|..|.|+.+.|.+|..+++|+.|||++|.|+.+-|++|.++++|..|-+- +|+|+......+ .++.+|+.|.+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhc
Confidence 578999999998888999999999999999999999999999999988886555 488875333333 56666666666
Q ss_pred cCCCCCCCCCccccCCcccccccccccccc-ccCC-ccc---------------------------cceeEEEEcCc---
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGG-AFY---------------------------NESITVVMKGH--- 129 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~-~~~---------------------------~~~~~~~~~~~--- 129 (331)
.-|.+. -++.+.|..++++..|.+..|.. .+.+ .+. .........+.
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 666655 44445555555555554443321 0000 000 00000000000
Q ss_pred --------------hhhHHHHhccCCEEEcCCCcCCCCCc-hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCC
Q 044710 130 --------------DFQLQKILVMFRAMDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 194 (331)
Q Consensus 130 --------------~~~~~~~~~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 194 (331)
...+......+.+--.+.+...++.| ..|..+++|+.|+|++|++++.-+.+|.++..+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 00011111112111123333444556 468889999999999999998888899999999999999
Q ss_pred CCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCC-CCccccccccCCcCCcCCC
Q 044710 195 FNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ-FNTFENDSYIGNIHLCGEP 250 (331)
Q Consensus 195 ~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~-~~~~~~~~~~~n~~lc~~~ 250 (331)
.|+|...-...|.++..|+.|+|.+|+|+...|-..+ ...+..+...+||+.|++.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 9998876667888899999999999999866664322 1233445567888888764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.1e-20 Score=167.45 Aligned_cols=219 Identities=22% Similarity=0.288 Sum_probs=129.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCcc-CchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISD-SFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
|+.|.+++|++. .+-+.+..++.|+.+++..|.+.. -+|..+..+..|++||||.|++.. .|..+ ..-.++..|+
T Consensus 57 LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~L--E~AKn~iVLN 132 (1255)
T KOG0444|consen 57 LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNL--EYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhh--hhhcCcEEEE
Confidence 344444444444 233344444444444444444431 144455566666666666666653 44443 3445666677
Q ss_pred ccCCCCCCCCCccccCCccccccccccccc-cccCCccc--cceeEEEEcCchhhHH-----HHhccCCEEEcCCCcCC-
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAFY--NESITVVMKGHDFQLQ-----KILVMFRAMDFSSNRFH- 151 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~L~~L~ls~n~l~- 151 (331)
||+|+|. .||..+|-+++-|-+|++++|. +.++.... .....+.+++.+...+ ..+.+|++|.+++.+-+
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 7777776 6776666677777777766653 12211100 0001111112121111 12445666666665433
Q ss_pred CCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 152 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 152 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
..+|..+..+.+|..+|+|.|++. ..|+++.++.+|+.|+||+|+|+ .+.........|+.|++|.|+++ .+|.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchH
Confidence 257888888888888999999888 78888888899999999999888 34445566777888999999888 4554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=6.5e-20 Score=157.26 Aligned_cols=98 Identities=29% Similarity=0.437 Sum_probs=72.1
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhh-cCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWL-GSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
|+.|+|..|+|. .+| .|.+|..|++|.++.|.|. .+|... .+++++.+|||.+|++. ..|+.. +.+.+|.+||
T Consensus 208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~--clLrsL~rLD 281 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI--CLLRSLERLD 281 (565)
T ss_pred hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH--HHhhhhhhhc
Confidence 344566677766 455 6777777777777777776 344444 48899999999999997 478877 7788999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQR 108 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 108 (331)
+|+|.++ .+|.. ++++ +|+.|.+..
T Consensus 282 lSNN~is-~Lp~s-Lgnl-hL~~L~leG 306 (565)
T KOG0472|consen 282 LSNNDIS-SLPYS-LGNL-HLKFLALEG 306 (565)
T ss_pred ccCCccc-cCCcc-cccc-eeeehhhcC
Confidence 9999999 66665 6777 777766544
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-19 Score=154.05 Aligned_cols=220 Identities=23% Similarity=0.239 Sum_probs=178.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccC-CcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGN-NMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
+|+.||||+|.|+.+-|++|.++..+..|-+.+ |+|+....+.|++|..|+.|.+.-|++.-...+.+ ..+++|..|
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al--~dL~~l~lL 169 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL--RDLPSLSLL 169 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH--HHhhhcchh
Confidence 489999999999999999999999987766655 99998888899999999999999999876544544 778999999
Q ss_pred EccCCCCCCCCCccccCCccccccccccccc-------c-----------ccCCc--------cc-----------c---
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQRRL-------E-----------YMGGA--------FY-----------N--- 119 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~-------~-----------~~~~~--------~~-----------~--- 119 (331)
.+.+|.+. .+++..|..+.+++.+.+..+. . ...+. ++ .
T Consensus 170 slyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 170 SLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred cccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 99999998 7888778888888887665533 0 00010 00 0
Q ss_pred cee-------EEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEe
Q 044710 120 ESI-------TVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 192 (331)
Q Consensus 120 ~~~-------~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 192 (331)
... .......+...+..+++|+.|+|++|++++.-+.+|.....+++|.|..|++...-...|.++..|+.|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 000 0011112334456689999999999999988899999999999999999999977778899999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 193 LSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 193 Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
|.+|+|+...|.+|..+.+|..|++-.|.+.
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999999999999999999999874
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=2.8e-19 Score=167.44 Aligned_cols=237 Identities=23% Similarity=0.327 Sum_probs=162.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+++|++.|+++ .+|++++.+.+|+.+++.+|+++ .+|..+....+|+.|....|.+.- +|+.. .++++|++|+
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~l--e~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFL--EGLKSLRTLD 316 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcc--cccceeeeee
Confidence 4788888888888 46788888888888888888885 677777788888888888888863 55554 5688999999
Q ss_pred ccCCCCCCCCCccccCCccc-cccccccccccccCCccc------ccee---EEEEcCchhhHHHHhccCCEEEcCCCcC
Q 044710 81 LSHNEFTGFLPTRIFPGMEA-MKNVDEQRRLEYMGGAFY------NESI---TVVMKGHDFQLQKILVMFRAMDFSSNRF 150 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~-L~~l~l~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~L~~L~ls~n~l 150 (331)
|..|++. .+|+.++..+.. +..++.+.+....-..+. ...+ ...+............+|+.|+|++|++
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 9999988 777765554443 444443322110000000 0000 0011111122233466788888888888
Q ss_pred CCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc-ccCCCC
Q 044710 151 HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW-GRIPRG 229 (331)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls-g~ip~~ 229 (331)
.......+.++..|++|+||+|+++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++ +.+|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 7333345777888888888888888 67788888888888888888886 556 7788899999999999987 345554
Q ss_pred CCCCccccccccCCcCC
Q 044710 230 NQFNTFENDSYIGNIHL 246 (331)
Q Consensus 230 ~~~~~~~~~~~~~n~~l 246 (331)
.....++.+.+.||.++
T Consensus 473 ~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred CCCcccceeeccCCccc
Confidence 44467778888888863
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.70 E-value=6.2e-17 Score=154.57 Aligned_cols=118 Identities=36% Similarity=0.610 Sum_probs=104.9
Q ss_pred cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 044710 139 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 218 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls 218 (331)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCC--CCccccccccCCcCCcCCCCCCCCC
Q 044710 219 YNRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEPLTVRCS 256 (331)
Q Consensus 219 ~N~lsg~ip~~~~--~~~~~~~~~~~n~~lc~~~~~~~c~ 256 (331)
+|.++|.+|.... +.......+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1233456788999999876545563
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-19 Score=138.16 Aligned_cols=162 Identities=23% Similarity=0.369 Sum_probs=137.8
Q ss_pred hhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcc
Q 044710 20 LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGME 99 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~ 99 (331)
+-++.+++.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|.++ ..+++|+.|+++-|.+. .+|.. |+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i--ssl~klr~lnvgmnrl~-~lprg-fgs-- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI--SSLPKLRILNVGMNRLN-ILPRG-FGS-- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh--hhchhhhheecchhhhh-cCccc-cCC--
Confidence 445677888999999998 56667899999999999999997 467777 78999999999999988 77766 444
Q ss_pred ccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC-CCchhhhCCCCCCEEEccCcccccCC
Q 044710 100 AMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNI 178 (331)
Q Consensus 100 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~ 178 (331)
++.|+.||+.+|++.. .+|..|..++.|+.|+|+.|.+. .+
T Consensus 101 -------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l 142 (264)
T KOG0617|consen 101 -------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL 142 (264)
T ss_pred -------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC
Confidence 4555677777787764 47888889999999999999999 78
Q ss_pred cccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 179 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 179 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
|..++++++|+.|.+.+|.+- ..|..++.+..|++|.+.+|+++-..|.
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 888999999999999999987 6889999999999999999999955444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=2.7e-16 Score=150.64 Aligned_cols=83 Identities=31% Similarity=0.399 Sum_probs=66.8
Q ss_pred hccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
...|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+|+ .+|..+..+++|+.|+
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 356888999999888 46643 357888999999988 46653 346788999999998 6788888999999999
Q ss_pred cccCCCcccCCC
Q 044710 217 LSYNRLWGRIPR 228 (331)
Q Consensus 217 ls~N~lsg~ip~ 228 (331)
+++|+|+|.+|.
T Consensus 452 Ls~N~Ls~~~~~ 463 (788)
T PRK15387 452 LEGNPLSERTLQ 463 (788)
T ss_pred CCCCCCCchHHH
Confidence 999999987775
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=8.9e-16 Score=156.52 Aligned_cols=201 Identities=22% Similarity=0.209 Sum_probs=104.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|++|++++|++. .++..+..+++|+.|+|+++...+.+|. ++.+++|++|+|++|.....+|..+ ..+++|+.|++
T Consensus 613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L 688 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDM 688 (1153)
T ss_pred CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh--hccCCCCEEeC
Confidence 444555555444 3444444455555555554433333332 4445555555555544333444443 44555555555
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh---
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL--- 158 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l--- 158 (331)
++|.....+|..+ ++++|+.|++..+.. ...+.....+|+.|++++|.+. .+|..+
T Consensus 689 ~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~------------------L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~ 747 (1153)
T PLN03210 689 SRCENLEILPTGI--NLKSLYRLNLSGCSR------------------LKSFPDISTNISWLDLDETAIE-EFPSNLRLE 747 (1153)
T ss_pred CCCCCcCccCCcC--CCCCCCEEeCCCCCC------------------ccccccccCCcCeeecCCCccc-ccccccccc
Confidence 5543333444332 344444444433210 0001111345555666666554 333321
Q ss_pred ---------------------------hCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCC
Q 044710 159 ---------------------------GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 211 (331)
Q Consensus 159 ---------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 211 (331)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 223467777777777666778778888888888888775444566554 5777
Q ss_pred CCeEEcccCCCcccCCC
Q 044710 212 LALLNLSYNRLWGRIPR 228 (331)
Q Consensus 212 L~~L~ls~N~lsg~ip~ 228 (331)
|+.|++++|..-..+|.
T Consensus 827 L~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cCEEECCCCCccccccc
Confidence 88888887755445554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=1.1e-15 Score=147.20 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=122.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.|+|++|+|+ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+|++|++. .+|..+ ..+|++|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERL----PSALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhH----hCCCCEEE
Confidence 3678999999998 5666554 48899999999887 4565543 46888888888886 455544 24788888
Q ss_pred ccCCCCCCCCCccccCCccccccccccccc-cccCCccc--cceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchh
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAFY--NESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEV 157 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 157 (331)
+++|+++ .+|..+. .+|+.|+++.|. ..+..... ...+.+..+....--....++|+.|++++|.++ .+|..
T Consensus 269 Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~ 343 (754)
T PRK15370 269 LFHNKIS-CLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPAS 343 (754)
T ss_pred CcCCccC-ccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChh
Confidence 8888887 5776543 356666666542 11111000 000000000000000011346777777777776 35654
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
+. ++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|+|+ .+|.
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence 43 57777777777776 4565442 56777777777777 3454443 35777777777776 4443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=8.6e-16 Score=147.80 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=131.5
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
...|++++++++ .+|..+. ++|+.|+|++|.++. +|..+. .+|++|++++|+++. +|..+ ..+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l----~~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL----PDTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh----hccccEEEC
Confidence 468999999999 5776664 489999999999994 565554 589999999999974 56544 357999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccc-cccCCccccceeEEEEcCchhh-HH-HHhccCCEEEcCCCcCCCCCchhh
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAFYNESITVVMKGHDFQ-LQ-KILVMFRAMDFSSNRFHGEIPEVL 158 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~L~~L~ls~n~l~~~~p~~l 158 (331)
++|++. .+|..+. .+|+.|+++.|. ..+...+......+.+.+.... +. .....|+.|++++|.++ .+|..+
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCccc
Confidence 999998 7887654 367777776653 1111111100011111110000 00 01224555666666666 344433
Q ss_pred hCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 159 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 159 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
.++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.|+ .+|.
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPE 384 (754)
T ss_pred --cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCH
Confidence 2577888888888774 565553 67888888888887 456555 357888888888888 4554
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=7e-15 Score=150.03 Aligned_cols=209 Identities=18% Similarity=0.223 Sum_probs=131.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.|+|+++...+.+| .+..+++|+.|+|++|.....+|..+..+++|+.|++++|...+.+|... .+++|++|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 47889999886555677 48888999999999987777888889999999999999876555666543 577888888
Q ss_pred ccCCCCCCCCCccccCCccccccccccccc-cccCCccc---cceeEE----------EEcCchhhHHHHhccCCEEEcC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAFY---NESITV----------VMKGHDFQLQKILVMFRAMDFS 146 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~L~~L~ls 146 (331)
+++|.....+|.. ..+|+.|++..+. ..++.... ...+.+ .............++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 8887655455532 2345555544432 11111000 000000 0000011111224678888888
Q ss_pred CCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCC---------------------CcCCCCCccc
Q 044710 147 SNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF---------------------NKLDGRIPEQ 205 (331)
Q Consensus 147 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~---------------------N~l~~~~~~~ 205 (331)
+|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|+|++ |.++ .+|..
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHH
Confidence 887777888888888888888888875444566543 445555555555 4444 34555
Q ss_pred ccCCCCCCeEEccc
Q 044710 206 LLSVTALALLNLSY 219 (331)
Q Consensus 206 l~~l~~L~~L~ls~ 219 (331)
+..+++|+.|++++
T Consensus 865 i~~l~~L~~L~L~~ 878 (1153)
T PLN03210 865 IEKFSNLSFLDMNG 878 (1153)
T ss_pred HhcCCCCCEEECCC
Confidence 55566666666655
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.1e-15 Score=141.43 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=30.1
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeeccccc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFY 61 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 61 (331)
..|+|++|.++ .+|..+.. +|+.|++.+|.++. +|. ..++|++|++++|+++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~~--~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred cEEEcCCCCCC-cCCcchhc--CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC
Confidence 35667777766 45555543 56666666666653 332 2355666666666665
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=2.5e-16 Score=139.47 Aligned_cols=210 Identities=25% Similarity=0.245 Sum_probs=135.8
Q ss_pred CccEEEccCCcCCC------CCchhhhCCCCCcEEeccCCcCccCchhhhcCCCC---CCeEEeeccccccc----CCCC
Q 044710 1 NLRSLDLNNNKLEG------PLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPE---LKILELRSNRFYGP----LCKS 67 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~----~~~~ 67 (331)
++++|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.+. +...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 37889999998872 24457788899999999999998766666666555 99999999988631 1111
Q ss_pred CCCcCC-CCccEEEccCCCCCCCCCcc---ccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEE
Q 044710 68 NITFPF-QALQIIDLSHNEFTGFLPTR---IFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAM 143 (331)
Q Consensus 68 ~~~~~l-~~L~~L~ls~n~l~~~~p~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 143 (331)
. ..+ ++|+.|++++|.+++..... .+..+++|+.|++..+.....+. ..........++|+.|
T Consensus 132 l--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----------~~l~~~l~~~~~L~~L 198 (319)
T cd00116 132 L--KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-----------RALAEGLKANCNLEVL 198 (319)
T ss_pred H--HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-----------HHHHHHHHhCCCCCEE
Confidence 2 345 78999999999998533222 24445566666655431000000 0000111123478888
Q ss_pred EcCCCcCCCC----CchhhhCCCCCCEEEccCcccccCCccccc-----CCCCCcEEeCCCCcCCC----CCcccccCCC
Q 044710 144 DFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFE-----NMTALESLDLSFNKLDG----RIPEQLLSVT 210 (331)
Q Consensus 144 ~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~l~~l~ 210 (331)
++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..++
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 8888877643 334455677788888888887753332222 23678888888888763 2334556667
Q ss_pred CCCeEEcccCCCc
Q 044710 211 ALALLNLSYNRLW 223 (331)
Q Consensus 211 ~L~~L~ls~N~ls 223 (331)
.|+++++++|.++
T Consensus 279 ~L~~l~l~~N~l~ 291 (319)
T cd00116 279 SLLELDLRGNKFG 291 (319)
T ss_pred CccEEECCCCCCc
Confidence 7888888888886
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-16 Score=150.23 Aligned_cols=199 Identities=25% Similarity=0.347 Sum_probs=139.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCC------------
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSN------------ 68 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~------------ 68 (331)
+|+.++..+|+++ .+|..+....+|+.|.+..|.+.. +|....+++.|++|+|..|++.. .|+.+
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHh
Confidence 4667777777775 667777777777777777777763 44455567777777777776642 22211
Q ss_pred ------------CCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHH
Q 044710 69 ------------ITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKI 136 (331)
Q Consensus 69 ------------~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (331)
....++.|+.|++.+|.+++..-+. +.+..+|+.|+++.|. +...+......
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNr---------------L~~fpas~~~k 405 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNR---------------LNSFPASKLRK 405 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccc---------------cccCCHHHHhc
Confidence 0022345666666666666443322 5566666666666542 22234444556
Q ss_pred hccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
+..|++|+||+|+++ .+|+.+..++.|++|....|++. ..| .+..++.|+.+|++.|+++...-......+.|++||
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 888999999999999 89999999999999999999999 667 688999999999999999865433333338999999
Q ss_pred cccCC
Q 044710 217 LSYNR 221 (331)
Q Consensus 217 ls~N~ 221 (331)
+++|.
T Consensus 483 lSGN~ 487 (1081)
T KOG0618|consen 483 LSGNT 487 (1081)
T ss_pred ccCCc
Confidence 99997
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.8e-15 Score=134.10 Aligned_cols=209 Identities=21% Similarity=0.163 Sum_probs=125.8
Q ss_pred ccEEEccCCcCCCC----CchhhhCCCCCcEEeccCCcCcc------CchhhhcCCCCCCeEEeecccccccCCCCCCCc
Q 044710 2 LRSLDLNNNKLEGP----LPISLAKCMKLEVVNVGNNMISD------SFPCWLGSLPELKILELRSNRFYGPLCKSNITF 71 (331)
Q Consensus 2 L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 71 (331)
|++|+++++.+++. ++..+...++++.|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+ .
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~ 102 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--E 102 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH--H
Confidence 78999999999643 55667778889999999998872 345677789999999999999875433332 2
Q ss_pred CC---CCccEEEccCCCCCCCCCcc---ccCCc-cccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEE
Q 044710 72 PF---QALQIIDLSHNEFTGFLPTR---IFPGM-EAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMD 144 (331)
Q Consensus 72 ~l---~~L~~L~ls~n~l~~~~p~~---~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 144 (331)
.+ ++|++|++++|.+++..... .+..+ ++|+.+++..+.....+. .........+..|+.|+
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-----------EALAKALRANRDLKELN 171 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----------HHHHHHHHhCCCcCEEE
Confidence 23 45999999999987321111 12333 555555555432100000 00011122234677777
Q ss_pred cCCCcCCCC----CchhhhCCCCCCEEEccCcccccCC----cccccCCCCCcEEeCCCCcCCCCCccccc-----CCCC
Q 044710 145 FSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQLL-----SVTA 211 (331)
Q Consensus 145 ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~ 211 (331)
+++|.+++. ++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+. ..+.
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 777776642 2333445557777777777665332 23445566677777777766642222211 1356
Q ss_pred CCeEEcccCCCc
Q 044710 212 LALLNLSYNRLW 223 (331)
Q Consensus 212 L~~L~ls~N~ls 223 (331)
|++|++++|.++
T Consensus 252 L~~L~l~~n~i~ 263 (319)
T cd00116 252 LLTLSLSCNDIT 263 (319)
T ss_pred ceEEEccCCCCC
Confidence 777777777665
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=2.6e-15 Score=134.40 Aligned_cols=169 Identities=27% Similarity=0.394 Sum_probs=109.8
Q ss_pred EEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccC
Q 044710 4 SLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSH 83 (331)
Q Consensus 4 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 83 (331)
..||+.|++. ++|..++.+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++. +|..+ +.+ -|+.|-+++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~l--C~l-pLkvli~sN 152 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGL--CDL-PLKVLIVSN 152 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhh--hcC-cceeEEEec
Confidence 4688999998 78988888889999999999997 678888999999999999999974 56655 434 388999999
Q ss_pred CCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCC
Q 044710 84 NEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKS 163 (331)
Q Consensus 84 n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~ 163 (331)
|+++ .+|..+ +...+|..|+.+.|.. ...... ...+.+|+.|.+..|.+. .+|..+..+ .
T Consensus 153 Nkl~-~lp~~i-g~~~tl~~ld~s~nei---------------~slpsq-l~~l~slr~l~vrRn~l~-~lp~El~~L-p 212 (722)
T KOG0532|consen 153 NKLT-SLPEEI-GLLPTLAHLDVSKNEI---------------QSLPSQ-LGYLTSLRDLNVRRNHLE-DLPEELCSL-P 212 (722)
T ss_pred Cccc-cCCccc-ccchhHHHhhhhhhhh---------------hhchHH-hhhHHHHHHHHHhhhhhh-hCCHHHhCC-c
Confidence 9998 888774 3555555444333210 000000 112444455555555555 444444422 3
Q ss_pred CCEEEccCcccccCCcccccCCCCCcEEeCCCCcCC
Q 044710 164 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199 (331)
Q Consensus 164 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 199 (331)
|..||++.|+++ .+|..|.+|+.|++|-|.+|.+.
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 455555555555 55555555555555555555555
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=2.5e-13 Score=123.95 Aligned_cols=197 Identities=32% Similarity=0.418 Sum_probs=114.5
Q ss_pred EEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCC-CCCeEEeecccccccCCCCCCCcCCCCccEEEccC
Q 044710 5 LDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLP-ELKILELRSNRFYGPLCKSNITFPFQALQIIDLSH 83 (331)
Q Consensus 5 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 83 (331)
++++.|.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+.. +|... ..+++|+.|++++
T Consensus 98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~--~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPL--RNLPNLKNLDLSF 172 (394)
T ss_pred eecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhh--hccccccccccCC
Confidence 4444444431 22233444555555555555552 333333342 55555555555542 22222 3455555555555
Q ss_pred CCCCCCCCccccCCcccccccccccccc-ccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC
Q 044710 84 NEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK 162 (331)
Q Consensus 84 n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~ 162 (331)
|+++ .+|.. ....+.|..++++.+.. .+.. .......|+++++++|.+. ..+..+..+.
T Consensus 173 N~l~-~l~~~-~~~~~~L~~L~ls~N~i~~l~~-----------------~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~ 232 (394)
T COG4886 173 NDLS-DLPKL-LSNLSNLNNLDLSGNKISDLPP-----------------EIELLSALEELDLSNNSII-ELLSSLSNLK 232 (394)
T ss_pred chhh-hhhhh-hhhhhhhhheeccCCccccCch-----------------hhhhhhhhhhhhhcCCcce-ecchhhhhcc
Confidence 5555 33332 11344444444443320 0000 0012445788888888644 5677788888
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
++..+.+.+|++. ..+..++.++.++.|++++|.++.. +. +....+++.|++++|.++...|..
T Consensus 233 ~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 233 NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 8888888888887 4467778888899999999998844 33 778888999999999888666643
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=3.9e-12 Score=121.79 Aligned_cols=91 Identities=31% Similarity=0.542 Sum_probs=85.8
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
++.|+|++|.++|.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|+++|.+|..+ ..+++|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEEC
Confidence 5679999999999999999999999999999999999999999999999999999999999999887 78999999999
Q ss_pred cCCCCCCCCCccc
Q 044710 82 SHNEFTGFLPTRI 94 (331)
Q Consensus 82 s~n~l~~~~p~~~ 94 (331)
++|+++|.+|..+
T Consensus 498 s~N~l~g~iP~~l 510 (623)
T PLN03150 498 NGNSLSGRVPAAL 510 (623)
T ss_pred cCCcccccCChHH
Confidence 9999999999763
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=7.6e-12 Score=114.22 Aligned_cols=192 Identities=25% Similarity=0.338 Sum_probs=144.8
Q ss_pred EEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCC-CccEEEccCCCCCCCCCccccCCccccccccc
Q 044710 28 VVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQ-ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDE 106 (331)
Q Consensus 28 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l 106 (331)
.++++.|.+..... .+..++.++.|++.+|.++. ++... .... +|+.|++++|++. .+|.. ...++.|+.|++
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~-i~~~~--~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITD-IPPLI--GLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCccccc-Ccccc--ccchhhcccccccccchh-hhhhh-hhcccccccccc
Confidence 58888888853333 45667889999999999985 44433 3453 8999999999998 66433 678899999988
Q ss_pred ccccc-ccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCC
Q 044710 107 QRRLE-YMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 185 (331)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 185 (331)
..+.. .+.. .....+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+.++
T Consensus 171 ~~N~l~~l~~-----------------~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~ 231 (394)
T COG4886 171 SFNDLSDLPK-----------------LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231 (394)
T ss_pred CCchhhhhhh-----------------hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence 77531 1110 0014778999999999999 78887777788999999999755 466778899
Q ss_pred CCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCC
Q 044710 186 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 246 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~l 246 (331)
..+..+.+.+|++.. .+..+..+++++.|++++|.++ .++.......+..+.+.+|...
T Consensus 232 ~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 232 KNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccccCCceeee-ccchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 999999999999874 3667888899999999999998 4444555556666666666443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=5.2e-13 Score=119.94 Aligned_cols=168 Identities=24% Similarity=0.377 Sum_probs=135.2
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|+.+.|..|.|. .+|.+++++..|++|+|+.|+++ ..|..+..|+ |+.|.+++|+++ .+|..+ +.+..|..||.
T Consensus 100 Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~i--g~~~tl~~ld~ 173 (722)
T KOG0532|consen 100 LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEI--GLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccc--ccchhHHHhhh
Confidence 456778889988 78999999999999999999998 6777888887 999999999996 567777 57889999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccc-cccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRL-EYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+.|++. .+|.. .+.+.+|+.|.+.+|. ..+ +.+.. .-.|..||+|.|+++ .+|-.|..
T Consensus 174 s~nei~-slpsq-l~~l~slr~l~vrRn~l~~l----------------p~El~--~LpLi~lDfScNkis-~iPv~fr~ 232 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQ-LGYLTSLRDLNVRRNHLEDL----------------PEELC--SLPLIRLDFSCNKIS-YLPVDFRK 232 (722)
T ss_pred hhhhhh-hchHH-hhhHHHHHHHHHhhhhhhhC----------------CHHHh--CCceeeeecccCcee-ecchhhhh
Confidence 999998 78877 6788888888766542 111 11111 335788999999999 89999999
Q ss_pred CCCCCEEEccCcccccCCccccc---CCCCCcEEeCCCCc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNK 197 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~ 197 (331)
++.|++|-|.+|.+. ..|..+. ...-.++|+...++
T Consensus 233 m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999999999 6665553 33445778877774
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.5e-12 Score=112.14 Aligned_cols=205 Identities=20% Similarity=0.217 Sum_probs=142.3
Q ss_pred CccEEEccCCcCCCCCc--hhhhCCCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCc
Q 044710 1 NLRSLDLNNNKLEGPLP--ISLAKCMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQAL 76 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 76 (331)
+|+.+.|.+..+. ..+ .....|++++.|||+.|-+... +......+++|+.|+|+.|++.-...... ...++.|
T Consensus 122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~l 199 (505)
T KOG3207|consen 122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHL 199 (505)
T ss_pred hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhh
Confidence 3677888888776 233 4677899999999999988754 33455689999999999999864322221 1357889
Q ss_pred cEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCc-
Q 044710 77 QIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIP- 155 (331)
Q Consensus 77 ~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p- 155 (331)
+.|.++.|.++..-...+...+++|..|++..|..... .......+..|++|||++|.+-. .+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------~~~~~~i~~~L~~LdLs~N~li~-~~~ 263 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------KATSTKILQTLQELDLSNNNLID-FDQ 263 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------ecchhhhhhHHhhccccCCcccc-ccc
Confidence 99999999998544444566778888888776521110 00111336778899999998763 33
Q ss_pred -hhhhCCCCCCEEEccCcccccC-Cccc-----ccCCCCCcEEeCCCCcCCCC-CcccccCCCCCCeEEcccCCCc
Q 044710 156 -EVLGNFKSLKVLNLSHNSLTGN-IPVS-----FENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 156 -~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~ls~N~ls 223 (331)
...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++|+.|....|.++
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4567888889999998888743 2322 24568899999999988632 1234556677888888888886
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4.6e-11 Score=94.89 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=29.9
Q ss_pred hccCCEEEcCCCcCCCCCchhh-hCCCCCCEEEccCcccccCC-cccccCCCCCcEEeCCCCcCCCCCc---ccccCCCC
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVL-GNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIP---EQLLSVTA 211 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~ 211 (331)
++.|++|++++|.++ .+++.+ ..+++|++|++++|+|.... -..++.+++|++|+|.+|.++...- ..+..+|+
T Consensus 63 L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~ 141 (175)
T PF14580_consen 63 LPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS 141 (175)
T ss_dssp -TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT
T ss_pred hhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh
Confidence 445566666666666 333333 34666666666666665321 1345566677777777776653311 13455666
Q ss_pred CCeEEc
Q 044710 212 LALLNL 217 (331)
Q Consensus 212 L~~L~l 217 (331)
|+.||-
T Consensus 142 Lk~LD~ 147 (175)
T PF14580_consen 142 LKVLDG 147 (175)
T ss_dssp -SEETT
T ss_pred hheeCC
Confidence 776653
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.3e-11 Score=96.56 Aligned_cols=130 Identities=25% Similarity=0.304 Sum_probs=47.8
Q ss_pred hhhCCCCCcEEeccCCcCccCchhhhc-CCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCC
Q 044710 19 SLAKCMKLEVVNVGNNMISDSFPCWLG-SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPG 97 (331)
Q Consensus 19 ~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 97 (331)
.+.+...+++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.++... .+ ..+++|++|++++|.++ .+++.+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l--~~L~~L~~L~L~~N~I~-~i~~~l--- 83 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GL--PGLPRLKTLDLSNNRIS-SISEGL--- 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T--T------TT--EEE--SS----S-CHHH---
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--Cc--cChhhhhhcccCCCCCC-ccccch---
Confidence 344555788899999988743 2455 5778899999999887532 22 55788999999999888 333211
Q ss_pred ccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC-CchhhhCCCCCCEEEccCccccc
Q 044710 98 MEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTG 176 (331)
Q Consensus 98 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 176 (331)
...+++|++|++++|++... .-..++.+++|+.|++.+|.+..
T Consensus 84 ------------------------------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 84 ------------------------------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ------------------------------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ------------------------------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 12367888888998888742 22457788999999999998874
Q ss_pred CCc---ccccCCCCCcEEeCC
Q 044710 177 NIP---VSFENMTALESLDLS 194 (331)
Q Consensus 177 ~~p---~~~~~l~~L~~L~Ls 194 (331)
..- ..+..+++|+.||-.
T Consensus 128 ~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 128 KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp STTHHHHHHHH-TT-SEETTE
T ss_pred hhhHHHHHHHHcChhheeCCE
Confidence 311 235668889988743
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=4.5e-11 Score=78.32 Aligned_cols=60 Identities=38% Similarity=0.547 Sum_probs=44.5
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccc
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF 60 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 60 (331)
+|++|++++|+|+...+.+|.++++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467777777777766666777777777777777777766667777777777777777754
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8e-12 Score=109.08 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=131.7
Q ss_pred hCCCCCcEEeccCCcCccCch-hhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcc
Q 044710 21 AKCMKLEVVNVGNNMISDSFP-CWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGME 99 (331)
Q Consensus 21 ~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~ 99 (331)
.++.+|+...|.+..+..... .....|++++.|||+.|-+....+..-....+++|+.|+++.|.+........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357789999999998863321 3556799999999999988754333322357899999999999987444433334556
Q ss_pred ccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCC-
Q 044710 100 AMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI- 178 (331)
Q Consensus 100 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~- 178 (331)
+|+.|.+..+-. .+ .........+++|+.|+|..|..-..-......+..|++|||++|++-...
T Consensus 198 ~lK~L~l~~CGl-------------s~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 198 HLKQLVLNSCGL-------------SW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred hhheEEeccCCC-------------CH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 666665544210 00 001122344789999999999533233334456778999999999887442
Q ss_pred cccccCCCCCcEEeCCCCcCCCC-Cccc-----ccCCCCCCeEEcccCCCcccCCCC
Q 044710 179 PVSFENMTALESLDLSFNKLDGR-IPEQ-----LLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 179 p~~~~~l~~L~~L~Ls~N~l~~~-~~~~-----l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
-...+.++.|+.|.++.+.++.. +|+. ....++|++|+++.|++. .++..
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl 319 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSL 319 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-ccccc
Confidence 13467889999999999988754 3332 356789999999999996 34443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.7e-11 Score=102.35 Aligned_cols=188 Identities=19% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccc---cCCCCCC------------------CcCC
Q 044710 15 PLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYG---PLCKSNI------------------TFPF 73 (331)
Q Consensus 15 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~~~------------------~~~l 73 (331)
.+|-.+.-+.+|+.+.++.+.-..+ -+.-..-|.|+++.+.+..++. ..|.... ....
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 3444455566777777776643311 1111223556666665544321 0110000 0113
Q ss_pred CCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC
Q 044710 74 QALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE 153 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 153 (331)
..|+++|||+|.++ .+.+. ..-++.++.|+++.|.... ......+++|+.||||+|.++ .
T Consensus 284 q~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~-----------------v~nLa~L~~L~~LDLS~N~Ls-~ 343 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRT-----------------VQNLAELPQLQLLDLSGNLLA-E 343 (490)
T ss_pred hhhhhccccccchh-hhhhh-hhhccceeEEeccccceee-----------------ehhhhhcccceEeecccchhH-h
Confidence 46788888888877 44433 3334555555554432100 011233667777888888777 6
Q ss_pred CchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCC-CcccccCCCCCCeEEcccCCCccc
Q 044710 154 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 154 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
+..|-..+.+++.|.|+.|.+... ..+.++-+|..||+++|+|... -...++++|-|+++.+.+|++.+.
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 666666777777888888777632 3456667778888888877632 223567777778888888877743
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.2e-10 Score=76.25 Aligned_cols=60 Identities=43% Similarity=0.574 Sum_probs=32.7
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCC
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 222 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l 222 (331)
+|++|++++|+++...+..|..+++|++|++++|+++...+..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555544444555555555555555555544445555555555555555543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=3e-11 Score=102.71 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=46.3
Q ss_pred hccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcccccC----CcccccCCCCCcEEeCCCCcCCCCCcccc--
Q 044710 137 LVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQL-- 206 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l-- 206 (331)
.+.|+.+.++.|.|... +...+..+++|+.|||..|.++.. +...+..++.|+.|++++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 45566666666655422 223455666666666666665532 12334445566666666666654432222
Q ss_pred ---cCCCCCCeEEcccCCCc
Q 044710 207 ---LSVTALALLNLSYNRLW 223 (331)
Q Consensus 207 ---~~l~~L~~L~ls~N~ls 223 (331)
...++|+.+++.+|.++
T Consensus 264 al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhccCCCCceeccCcchhH
Confidence 23456666666666665
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1e-10 Score=97.85 Aligned_cols=82 Identities=26% Similarity=0.328 Sum_probs=40.8
Q ss_pred hccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
.+.++.|++|+|.+. .+.. ++.+++|+.||||+|.++ .+..+-.++-+.++|.|+.|.|.. -+.+..+-+|..||
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheecc
Confidence 344444555555444 2222 444455555555555444 233333344444555555554431 12345556677788
Q ss_pred cccCCCc
Q 044710 217 LSYNRLW 223 (331)
Q Consensus 217 ls~N~ls 223 (331)
+++|++.
T Consensus 381 l~~N~Ie 387 (490)
T KOG1259|consen 381 LSSNQIE 387 (490)
T ss_pred ccccchh
Confidence 8888775
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.8e-10 Score=98.02 Aligned_cols=221 Identities=23% Similarity=0.252 Sum_probs=129.3
Q ss_pred ccEEEccCCcCCCC----CchhhhCCCCCcEEeccCCc---CccCchh-------hhcCCCCCCeEEeecccccccCCCC
Q 044710 2 LRSLDLNNNKLEGP----LPISLAKCMKLEVVNVGNNM---ISDSFPC-------WLGSLPELKILELRSNRFYGPLCKS 67 (331)
Q Consensus 2 L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~~ 67 (331)
+++|+||+|-|... +...+.+.++|+..++++=- +...+|. ++..++.|++|+||+|-|...-+..
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 56788888877633 33445555666666665421 1112232 2334556666666666653211111
Q ss_pred C--CCcCCCCccEEEccCCCCCCCCCcc-------------ccCCccccccccccccccccCCcc----------cccee
Q 044710 68 N--ITFPFQALQIIDLSHNEFTGFLPTR-------------IFPGMEAMKNVDEQRRLEYMGGAF----------YNESI 122 (331)
Q Consensus 68 ~--~~~~l~~L~~L~ls~n~l~~~~p~~-------------~~~~l~~L~~l~l~~~~~~~~~~~----------~~~~~ 122 (331)
+ ....+..|++|.|.+|.+.. .-.. ..+.-+.|+.+...+|...-.+.. .....
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 0 01235566666666666541 1111 122233444444444432222110 12222
Q ss_pred EEEEcCchh-------hHHHHhccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcccccCCcccc-----cCCC
Q 044710 123 TVVMKGHDF-------QLQKILVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSF-----ENMT 186 (331)
Q Consensus 123 ~~~~~~~~~-------~~~~~~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~ 186 (331)
.+..++... ..+..+++|+.|||.+|.++.+ +...+..+++|++|++++|.+......+| ...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 333333322 2234589999999999999854 45667889999999999999986655444 2368
Q ss_pred CCcEEeCCCCcCCCC----CcccccCCCCCCeEEcccCCCc
Q 044710 187 ALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 187 ~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+|+.|.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 999999999999854 2233456789999999999994
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=7.9e-10 Score=101.38 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=56.3
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.+.+..|.|.. +-..+..+.+|+.|++.+|.|.... ..+..+++|++|++++|.|+...+. ..++.|+.|+++
T Consensus 75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLS 148 (414)
T ss_pred Hhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccch----hhccchhhheec
Confidence 345556666652 2334566667777777777776432 2255667777777777777654333 235557777777
Q ss_pred CCCCCCCCCccccCCcccccccccccc
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRR 109 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~ 109 (331)
+|.+. .+.. +..+..|+.+++..+
T Consensus 149 ~N~i~-~~~~--~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 149 GNLIS-DISG--LESLKSLKLLDLSYN 172 (414)
T ss_pred cCcch-hccC--CccchhhhcccCCcc
Confidence 77776 3322 333555555554443
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-10 Score=96.70 Aligned_cols=178 Identities=22% Similarity=0.192 Sum_probs=95.4
Q ss_pred ccEEEccCCcCCC-CCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeeccc-ccccCCCCCCCcCCCCccEE
Q 044710 2 LRSLDLNNNKLEG-PLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNR-FYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 2 L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L 79 (331)
|++||||+..|+. .+-.-+..|.+|+.|.|.++++.+.+...++.-.+|+.|+|+.+. ++. ......+..++.|+.|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHhhc
Confidence 4566676666652 123345566677777777777776666666666677777776542 221 1111222456666677
Q ss_pred EccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCC---CCCch
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFH---GEIPE 156 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~---~~~p~ 156 (331)
+++.+.+.......+. ...-+.|+.|++++..-. ..+..
T Consensus 266 NlsWc~l~~~~Vtv~V--------------------------------------~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAV--------------------------------------AHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred CchHhhccchhhhHHH--------------------------------------hhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 7766665432211110 011234445555544311 11222
Q ss_pred hhhCCCCCCEEEccCc-ccccCCcccccCCCCCcEEeCCCCcCCCCCccc---ccCCCCCCeEEcccC
Q 044710 157 VLGNFKSLKVLNLSHN-SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ---LLSVTALALLNLSYN 220 (331)
Q Consensus 157 ~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~L~ls~N 220 (331)
-...+++|.+|||+.| .++...-..|-+++.|++|.++.|.. .+|.. +...|+|.+||+.++
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 2345677777777765 34433334556667777777777754 34442 455667777776543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.1e-09 Score=100.45 Aligned_cols=176 Identities=26% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccc
Q 044710 22 KCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAM 101 (331)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 101 (331)
.+..++.+++..|.+.. +-..+..+.+|+.|++.+|++...... . ..+.+|++|++++|.|+...+ +..+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l--~~~~~L~~L~ls~N~I~~i~~---l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-L--SSLVNLQVLDLSFNKITKLEG---LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-h--hhhhcchheeccccccccccc---hhhccch
Confidence 34455555555555543 222344555666666666665542220 1 335566666666666653222 3334444
Q ss_pred ccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchh-hhCCCCCCEEEccCcccccCCc-
Q 044710 102 KNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEV-LGNFKSLKVLNLSHNSLTGNIP- 179 (331)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p- 179 (331)
+.|++..|...-... ...+..|+.+++++|.+...-+ . ...+..++.+++..|.+.....
T Consensus 143 ~~L~l~~N~i~~~~~-----------------~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 143 KELNLSGNLISDISG-----------------LESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred hhheeccCcchhccC-----------------CccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccch
Confidence 445444432110000 0113444444555554442211 1 2344444444444444431100
Q ss_pred -------------------ccccCCCC--CcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 180 -------------------VSFENMTA--LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 180 -------------------~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
..+..+.. |+.+++++|.+. ..+..+..+..+..+++.+|.++
T Consensus 205 ~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 205 DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 01111222 667777777776 23244556667777777777765
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.57 E-value=1.6e-09 Score=80.47 Aligned_cols=59 Identities=25% Similarity=0.406 Sum_probs=36.0
Q ss_pred cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCC
Q 044710 139 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 199 (331)
.++.|++++|.++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++..||..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 3455566666666 56666666666666666666666 44555555666666666666655
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=4.1e-09 Score=97.90 Aligned_cols=109 Identities=26% Similarity=0.276 Sum_probs=77.1
Q ss_pred HHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCe
Q 044710 135 KILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 214 (331)
Q Consensus 135 ~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 214 (331)
..++.++.|+|++|+++. .. .+..++.|++|||++|.+. .+|..=..-.+|+.|.|++|.++.. ..+.++.+|+.
T Consensus 184 qll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhc
Confidence 457888999999999984 32 7888999999999999998 4553222223499999999998743 24678899999
Q ss_pred EEcccCCCcccCC--CCCCCCccccccccCCcCCcC
Q 044710 215 LNLSYNRLWGRIP--RGNQFNTFENDSYIGNIHLCG 248 (331)
Q Consensus 215 L~ls~N~lsg~ip--~~~~~~~~~~~~~~~n~~lc~ 248 (331)
||+++|.|++--- ....+..+..+...|||.-|.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999998874311 011122334456678887664
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=1.6e-07 Score=92.80 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=60.4
Q ss_pred ccEEEccCCc--CCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 2 LRSLDLNNNK--LEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 2 L~~L~Ls~n~--i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
|++|-+..|. +....+..|..++.|++|||++|.=-+.+|..++.|-+|++|+|++..+. .+|..+ ..+..|.+|
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l--~~Lk~L~~L 623 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL--GNLKKLIYL 623 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH--HHHHhhhee
Confidence 4555555654 33333334666667777777766555566666666777777777766665 455555 556666677
Q ss_pred EccCCCCCCCCCccccCCccccccccccc
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQR 108 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 108 (331)
++..+.....+ ..+...+.+|++|.+..
T Consensus 624 nl~~~~~l~~~-~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESI-PGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccc-cchhhhcccccEEEeec
Confidence 66665544233 23344566666665443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=5.3e-08 Score=80.66 Aligned_cols=86 Identities=22% Similarity=0.251 Sum_probs=52.8
Q ss_pred ccEEEccCCcCCCCCc----hhhhCCCCCcEEeccCCcCc---cCch-------hhhcCCCCCCeEEeecccccccCCCC
Q 044710 2 LRSLDLNNNKLEGPLP----ISLAKCMKLEVVNVGNNMIS---DSFP-------CWLGSLPELKILELRSNRFYGPLCKS 67 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~l~~~~~~~ 67 (331)
++.+|||+|-|..+-. ..+++-.+|+..++++-... ..++ .++.+||.|+.++||+|-|....|..
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 5677888888875433 34445567777777654221 1122 34457788888888888875544432
Q ss_pred C--CCcCCCCccEEEccCCCCC
Q 044710 68 N--ITFPFQALQIIDLSHNEFT 87 (331)
Q Consensus 68 ~--~~~~l~~L~~L~ls~n~l~ 87 (331)
. .....+.|.+|.+++|.+.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCC
Confidence 1 0134567888888888775
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=7e-09 Score=96.42 Aligned_cols=179 Identities=26% Similarity=0.301 Sum_probs=116.1
Q ss_pred chhhhCCCCCcEEeccCCcCccCchhhhcCC-CCCCeEEeeccccc----------ccCCCCCCCcCCCCccEEEccCCC
Q 044710 17 PISLAKCMKLEVVNVGNNMISDSFPCWLGSL-PELKILELRSNRFY----------GPLCKSNITFPFQALQIIDLSHNE 85 (331)
Q Consensus 17 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~~~l~~L~~L~ls~n~ 85 (331)
|-++..+..|++|.|.++.+... ..+..+ ..|++|.-. |.+. |.+.... ....|.+.++++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~---~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP---VWNKLATASFSYNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch---hhhhHhhhhcchhh
Confidence 55677788899999988888631 111111 234444221 2111 2222221 23467788888888
Q ss_pred CCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCC
Q 044710 86 FTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLK 165 (331)
Q Consensus 86 l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 165 (331)
+. .+.. .+.-+++++.|+++.|. -...++...++.|+.|||+.|.+. .+|..-..-..|+
T Consensus 176 L~-~mD~-SLqll~ale~LnLshNk-----------------~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 176 LV-LMDE-SLQLLPALESLNLSHNK-----------------FTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQ 235 (1096)
T ss_pred HH-hHHH-HHHHHHHhhhhccchhh-----------------hhhhHHHHhcccccccccccchhc-cccccchhhhhhe
Confidence 76 3332 35667778888877653 112234455889999999999998 5664322223499
Q ss_pred EEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCC-cccccCCCCCCeEEcccCCCc
Q 044710 166 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 166 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~ls~N~ls 223 (331)
.|++++|.++.. ..+.++.+|..||+++|-|.+.- -..+..+..|+.|+|.+|.+-
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998843 34678999999999999887642 224566778899999999884
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.2e-06 Score=52.68 Aligned_cols=35 Identities=46% Similarity=0.649 Sum_probs=16.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMIS 37 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 37 (331)
|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 455555555555 33434555555555555555554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=5.3e-07 Score=75.80 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=103.1
Q ss_pred CCCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcc
Q 044710 22 KCMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGME 99 (331)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~ 99 (331)
.++.++.+||.+|.|+.. +...+.+||.|++|+|+.|.+...+...- .+..+|+.|-|.+..+...........++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 356677788888877642 44455677888888888887765433221 34567777777777776554455566666
Q ss_pred ccccccccccc---cccCCcc----ccceeEEEEcCch-------hhHHHHhccCCEEEcCCCcCCCCCc-hhhhCCCCC
Q 044710 100 AMKNVDEQRRL---EYMGGAF----YNESITVVMKGHD-------FQLQKILVMFRAMDFSSNRFHGEIP-EVLGNFKSL 164 (331)
Q Consensus 100 ~L~~l~l~~~~---~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~L~~L~ls~n~l~~~~p-~~l~~l~~L 164 (331)
.++.+.++.|. -.+...- ......+...... .......+++..+-+..|.+..+-. ..+..++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 66666555431 0000000 0000000111110 1112335566666666665543221 234445566
Q ss_pred CEEEccCcccccCC-cccccCCCCCcEEeCCCCcCCCCCcc------cccCCCCCCeEEcc
Q 044710 165 KVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPE------QLLSVTALALLNLS 218 (331)
Q Consensus 165 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~~l~~L~~L~ls 218 (331)
..|+|+.|+|.... -+.+.+++.|..|.+++|.+.+.... .++.+++++.|+=+
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 66777777765321 24556667777777777766543221 23455566655533
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=9.3e-07 Score=87.42 Aligned_cols=100 Identities=25% Similarity=0.312 Sum_probs=74.0
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCc--CccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM--ISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+...+-+|.+. .++.+.. +++|++|-+..|. +.....+.|..++.|++|||++|.--+.+|..+ +.+-+|++|+
T Consensus 526 rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I--~~Li~LryL~ 601 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI--GELVHLRYLD 601 (889)
T ss_pred eEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH--hhhhhhhccc
Confidence 45556666665 3443433 3478888888886 554445557889999999999887667788887 7788999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQR 108 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 108 (331)
+++..+. .+|.. ++++..|.+|++..
T Consensus 602 L~~t~I~-~LP~~-l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 602 LSDTGIS-HLPSG-LGNLKKLIYLNLEV 627 (889)
T ss_pred ccCCCcc-ccchH-HHHHHhhheecccc
Confidence 9999988 78876 67778888777654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.7e-06 Score=72.84 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=109.1
Q ss_pred hhCCCCCcEEeccCCcCccCc-hhhhc-CCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCC
Q 044710 20 LAKCMKLEVVNVGNNMISDSF-PCWLG-SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPG 97 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 97 (331)
+.....++.|.+.++.|.... -..|+ ..+.++++||..|.++..........+++.|++|+++.|++...|-.. -..
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-ccc
Confidence 334445667777777775331 12233 467899999999999753222222357899999999999998544321 123
Q ss_pred ccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC-----CCch----h---h-------
Q 044710 98 MEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG-----EIPE----V---L------- 158 (331)
Q Consensus 98 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-----~~p~----~---l------- 158 (331)
+.+|+.+.+...... +. ....+...++.+++|.+|.|.+.. ...+ . +
T Consensus 120 ~~nl~~lVLNgT~L~-------------w~-~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLS-------------WT-QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE 185 (418)
T ss_pred ccceEEEEEcCCCCC-------------hh-hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH
Confidence 445555443321100 00 011122336667777777774321 1000 0 0
Q ss_pred ----------hCCCCCCEEEccCcccccC-CcccccCCCCCcEEeCCCCcCCCC-CcccccCCCCCCeEEcccCCCcccC
Q 044710 159 ----------GNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLWGRI 226 (331)
Q Consensus 159 ----------~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~ls~N~lsg~i 226 (331)
.-++++..+-+..|.+... .-..+..++.+..|.|+.|+|..- --+.+..++.|..|.+++|++...+
T Consensus 186 ~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 186 QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 0123444455555544322 123344566777888888888643 2346777888888899999887655
Q ss_pred CC
Q 044710 227 PR 228 (331)
Q Consensus 227 p~ 228 (331)
..
T Consensus 266 ~~ 267 (418)
T KOG2982|consen 266 RG 267 (418)
T ss_pred cC
Confidence 44
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.6e-07 Score=69.92 Aligned_cols=89 Identities=27% Similarity=0.444 Sum_probs=71.4
Q ss_pred hccCCEEEcCCCcCCCCCchhhh-CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLG-NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 215 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 215 (331)
...|+..+|++|.+. ..|..|. .++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 345677899999998 5565554 4568999999999999 77888999999999999999998 455666668888899
Q ss_pred EcccCCCcccCCCC
Q 044710 216 NLSYNRLWGRIPRG 229 (331)
Q Consensus 216 ~ls~N~lsg~ip~~ 229 (331)
|..+|.+. +||..
T Consensus 129 ds~~na~~-eid~d 141 (177)
T KOG4579|consen 129 DSPENARA-EIDVD 141 (177)
T ss_pred cCCCCccc-cCcHH
Confidence 99999886 66654
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.9e-06 Score=51.78 Aligned_cols=34 Identities=41% Similarity=0.688 Sum_probs=12.3
Q ss_pred CCEEEccCcccccCCcccccCCCCCcEEeCCCCcC
Q 044710 164 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 198 (331)
Q Consensus 164 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 198 (331)
|++|++++|+|+ .+|..++++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444443 2232333444444444444433
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2e-05 Score=70.66 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=34.5
Q ss_pred hhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCC-CCCCCCC
Q 044710 20 LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHN-EFTGFLP 91 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p 91 (331)
+..+.+++.|++++|.++ .+| .+. .+|++|.++++.-...+|..+ ..+|++|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-GLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-ccc
Confidence 334567777777777665 334 121 357777776643323344332 246777777776 443 444
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.6e-07 Score=76.19 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=109.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCc-CccC-chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM-ISDS-FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 78 (331)
+|+.|.|.++++.+.+...++.-.+|+.|+|+.+. ++.. ..-.+.+++.|..|+|+++.+....-......--++|..
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 37889999999999999999999999999999864 4422 223467899999999999988654322222122457888
Q ss_pred EEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCc-CCCCCchh
Q 044710 79 IDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNR-FHGEIPEV 157 (331)
Q Consensus 79 L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~p~~ 157 (331)
|++++..-. ++. ..+. .....+++|..||||+|. ++...-..
T Consensus 291 LNlsG~rrn-------l~~-sh~~-----------------------------tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 291 LNLSGYRRN-------LQK-SHLS-----------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred hhhhhhHhh-------hhh-hHHH-----------------------------HHHHhCCceeeeccccccccCchHHHH
Confidence 888775422 000 0111 112447889999999875 44444456
Q ss_pred hhCCCCCCEEEccCcccccCCccc---ccCCCCCcEEeCCCC
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVS---FENMTALESLDLSFN 196 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N 196 (331)
|.+++.|++|.++.|.. .+|.. +...++|.+||..++
T Consensus 334 ~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77899999999999863 35544 466789999998765
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.8e-05 Score=63.05 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=53.0
Q ss_pred EEEccCCcCCCCCchhhh-CCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 4 SLDLNNNKLEGPLPISLA-KCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 4 ~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
.++|.+.++... . .++ -+.+...+||++|.+... ..|..++.|.+|.|++|+|+..-|.-. .-+++|+.|.+.
T Consensus 23 e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~--~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 23 ELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLD--TFLPNLKTLILT 96 (233)
T ss_pred ccccccccccch-h-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchh--hhccccceEEec
Confidence 456666665521 1 111 124567788999988632 357788889999999999886655543 447788999999
Q ss_pred CCCCC
Q 044710 83 HNEFT 87 (331)
Q Consensus 83 ~n~l~ 87 (331)
+|++.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 98886
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=9.5e-05 Score=66.37 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCC
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 196 (331)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45667777666544 2333222 46666666655
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=0.0001 Score=61.60 Aligned_cols=162 Identities=21% Similarity=0.276 Sum_probs=90.3
Q ss_pred hhhCCCCCcEEeccCCcCccCchh----hhcCCCCCCeEEeecccccccCCCC-C-----------CCcCCCCccEEEcc
Q 044710 19 SLAKCMKLEVVNVGNNMISDSFPC----WLGSLPELKILELRSNRFYGPLCKS-N-----------ITFPFQALQIIDLS 82 (331)
Q Consensus 19 ~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~-~-----------~~~~l~~L~~L~ls 82 (331)
++.+|+.|+..+||+|.+....|. .+++-..|.+|.+++|.+. .+... + ....-+.|+.+.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 567899999999999999866554 3456788999999999873 22111 0 01235689999999
Q ss_pred CCCCCCCCCcccc----CCccccccccccccccccCCccccceeEEEEcCchhhH--------HHHhccCCEEEcCCCcC
Q 044710 83 HNEFTGFLPTRIF----PGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQL--------QKILVMFRAMDFSSNRF 150 (331)
Q Consensus 83 ~n~l~~~~p~~~~----~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~ls~n~l 150 (331)
.|++. ..|.... ..-..|+.+. +..++..+.- ...+.+|+.||+.+|.+
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vk------------------i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVK------------------IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEE------------------eeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 99886 3332211 1101122211 2222222210 11245666666666666
Q ss_pred CCC----CchhhhCCCCCCEEEccCcccccCCcccc------cCCCCCcEEeCCCCcCCC
Q 044710 151 HGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSF------ENMTALESLDLSFNKLDG 200 (331)
Q Consensus 151 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~ 200 (331)
+-. +...+..++.|+.|.+..|-++.....++ ...++|..|-+.+|.+.+
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 532 22334455566666666666654333221 123556666666665544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00011 Score=58.75 Aligned_cols=83 Identities=25% Similarity=0.256 Sum_probs=65.6
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
...+||++|.+.. -..|..++.|..|.|++|+|+.+-|.--.-+++|+.|.|.+|.+.. +.+-.....+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCccceeee
Confidence 3568999999873 2368889999999999999998777655567899999999999864 222222256889999999
Q ss_pred cCCCCC
Q 044710 82 SHNEFT 87 (331)
Q Consensus 82 s~n~l~ 87 (331)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 999887
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=5e-05 Score=73.50 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=86.1
Q ss_pred CCccEEEccCCCCC-CCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC
Q 044710 74 QALQIIDLSHNEFT-GFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 74 ~~L~~L~ls~n~l~-~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
.+|++||+++...- ...|..+...+|+|+.|.+.+..- ........+..+++|..||+|+.+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--------------~~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--------------DNDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--------------cchhHHHHhhccCccceeecCCCCccC
Confidence 46777777765432 123333344556666665443210 011122344558899999999999884
Q ss_pred CCchhhhCCCCCCEEEccCccccc-CCcccccCCCCCcEEeCCCCcCCCCC--cc----cccCCCCCCeEEcccCCCcc
Q 044710 153 EIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDGRI--PE----QLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 153 ~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~----~l~~l~~L~~L~ls~N~lsg 224 (331)
+ ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|........ .. .-..+|.|+.||.|+..+++
T Consensus 188 -l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 188 -L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred -c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 3 678899999999887766652 22234567999999999987654321 11 22457899999999887764
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.0001 Score=61.19 Aligned_cols=68 Identities=29% Similarity=0.299 Sum_probs=45.5
Q ss_pred CchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecc--cccccCCCCCCCcCCCCccEEEccCCCCC
Q 044710 16 LPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN--RFYGPLCKSNITFPFQALQIIDLSHNEFT 87 (331)
Q Consensus 16 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 87 (331)
+..-...+.+|+.|++.+..++.. ..|..|++|++|.++.| ++.+.++... ..+++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCCccc
Confidence 444555566777778777777632 24667788888888888 4443333322 45688888888888876
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.0001 Score=61.22 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=58.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCC--cCccCchhhhcCCCCCCeEEeecccccccCCCCC-CCcCCCCccE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNN--MISDSFPCWLGSLPELKILELRSNRFYGPLCKSN-ITFPFQALQI 78 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~ 78 (331)
|+.|++.+..++. -..|..+++|++|.++.| ++.+.++-....+++|++|+++.|++.. +..+ ....+.+|..
T Consensus 45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 4455555665552 125667889999999999 6666555555677999999999999863 2221 1245778899
Q ss_pred EEccCCCCCC
Q 044710 79 IDLSHNEFTG 88 (331)
Q Consensus 79 L~ls~n~l~~ 88 (331)
|++.+|..+.
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 9999887763
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.001 Score=50.19 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=29.8
Q ss_pred chhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccC
Q 044710 17 PISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSH 83 (331)
Q Consensus 17 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 83 (331)
..+|.++.+|+.+.+.. .+.......|.++++|+.+.+.++ +.. ++. ..+..+.+++.+.+.+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~-~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGD-NAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-T-TTTTT-TT-EEEEETS
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cce-eeeecccccccccccc
Confidence 34666777777777764 455455566777767777777664 332 222 1224555666666643
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0016 Score=49.11 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=51.0
Q ss_pred hhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccce
Q 044710 42 CWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNES 121 (331)
Q Consensus 42 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 121 (331)
..|.++.+|+.+.+.+ .+...-... +..+++|+.+++.++ +. .++...|..+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~--F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~--------------------- 59 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENA--FSNCTSLKSINFPNN-LT-SIGDNAFSNCKS--------------------- 59 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTT--TTT-TT-SEEEESST-TS-CE-TTTTTT-TT---------------------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhh--ccccccccccccccc-cc-ccceeeeecccc---------------------
Confidence 4567777788888764 343322222 356667888887664 44 555554544333
Q ss_pred eEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCC
Q 044710 122 ITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 201 (331)
++.+.+.. .+.......|..+++|+.+++..+ +.......|... .|+.+.+.. .+...
T Consensus 60 ------------------l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i 117 (129)
T PF13306_consen 60 ------------------LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKI 117 (129)
T ss_dssp -------------------EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS-
T ss_pred ------------------cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEE
Confidence 34444433 222122334555667777777654 443344556665 677776665 33333
Q ss_pred CcccccCCCCC
Q 044710 202 IPEQLLSVTAL 212 (331)
Q Consensus 202 ~~~~l~~l~~L 212 (331)
....|.++++|
T Consensus 118 ~~~~F~~~~~l 128 (129)
T PF13306_consen 118 EENAFKNCTKL 128 (129)
T ss_dssp ---GGG-----
T ss_pred CCccccccccC
Confidence 44455555554
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00022 Score=69.19 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=46.2
Q ss_pred CCCcEEeccCCcCccC-chhhhc-CCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccc
Q 044710 24 MKLEVVNVGNNMISDS-FPCWLG-SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAM 101 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~-~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 101 (331)
.+|++|++++...-.. -|..++ -+|+|+.|.+++=.+....-.. ...++++|..||+|+.+++ .+ .-.+.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNIS-NL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCcc-Cc--HHHhccccH
Confidence 4688888887654311 122233 4788888888876654321111 1145788899999988887 33 114555555
Q ss_pred ccccc
Q 044710 102 KNVDE 106 (331)
Q Consensus 102 ~~l~l 106 (331)
+.|.+
T Consensus 198 q~L~m 202 (699)
T KOG3665|consen 198 QVLSM 202 (699)
T ss_pred HHHhc
Confidence 55543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.85 E-value=0.00044 Score=34.60 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=11.7
Q ss_pred CccEEEccCCcCCCCCchhhhC
Q 044710 1 NLRSLDLNNNKLEGPLPISLAK 22 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~ 22 (331)
+|++|||++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4566666666666 45544443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=4.5e-05 Score=63.91 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=73.8
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
.+.|+.=++.++++ .....|+.|++|.|+-|.|+..-| +..|++|++|+|..|.|.. +..-....++++|+.|.|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhh
Confidence 45677777777742 245678999999999999986544 7889999999999998864 222222367899999999
Q ss_pred cCCCCCCCCCcc----ccCCcccccccc
Q 044710 82 SHNEFTGFLPTR----IFPGMEAMKNVD 105 (331)
Q Consensus 82 s~n~l~~~~p~~----~~~~l~~L~~l~ 105 (331)
..|.-.|..+.. ++..+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 999988876654 355667777665
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=8.3e-05 Score=62.33 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCC
Q 044710 23 CMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFT 87 (331)
Q Consensus 23 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 87 (331)
+.+.+.|+..++.++++ .....|+.|+.|.|+-|+|+..-|. ..+++|++|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl----~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPL----QRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhH----HHHHHHHHHHHHhcccc
Confidence 55678899999999854 3456899999999999999764443 56889999999999877
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.37 E-value=0.0017 Score=32.46 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=12.4
Q ss_pred CCcEEeccCCcCccCchhhhcC
Q 044710 25 KLEVVNVGNNMISDSFPCWLGS 46 (331)
Q Consensus 25 ~L~~L~L~~n~l~~~~p~~~~~ 46 (331)
+|++|+|++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 45555543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.91 E-value=2.9e-05 Score=71.87 Aligned_cols=87 Identities=30% Similarity=0.312 Sum_probs=50.5
Q ss_pred hccCCEEEcCCCcCCCC----CchhhhCCCC-CCEEEccCcccccCC----cccccCC-CCCcEEeCCCCcCCCCC----
Q 044710 137 LVMFRAMDFSSNRFHGE----IPEVLGNFKS-LKVLNLSHNSLTGNI----PVSFENM-TALESLDLSFNKLDGRI---- 202 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~----~p~~l~~l~~-L~~L~Ls~N~l~~~~----p~~~~~l-~~L~~L~Ls~N~l~~~~---- 202 (331)
..++++|.+.+|.++.. +...+...+. +..+++..|.+.+.. ...+..+ ..++.++++.|.|+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44566666766666521 1223444444 555777777766431 2233444 56677777777776543
Q ss_pred cccccCCCCCCeEEcccCCCc
Q 044710 203 PEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 203 ~~~l~~l~~L~~L~ls~N~ls 223 (331)
...+..++.++.+.+++|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 334455667777777777764
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.028 Score=25.95 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=4.9
Q ss_pred CccEEEccCCCCC
Q 044710 75 ALQIIDLSHNEFT 87 (331)
Q Consensus 75 ~L~~L~ls~n~l~ 87 (331)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.28 E-value=0.0005 Score=63.82 Aligned_cols=189 Identities=23% Similarity=0.189 Sum_probs=101.3
Q ss_pred ccEEEccCCcCCCCCc----hhhhCCCCCcEEeccCCcCccCchhhh----cCC-CCCCeEEeecccccccCCCCC--CC
Q 044710 2 LRSLDLNNNKLEGPLP----ISLAKCMKLEVVNVGNNMISDSFPCWL----GSL-PELKILELRSNRFYGPLCKSN--IT 70 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~~~~~--~~ 70 (331)
+..|+|.+|.+..... ..+.....|+.|++++|.+.+.....+ ... ..|++|++..|.++..-...+ ..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4556777777774433 345556777888888888764322222 222 456667777666653211110 11
Q ss_pred cCCCCccEEEccCCCCCCC----CCcc---ccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhcc-CCE
Q 044710 71 FPFQALQIIDLSHNEFTGF----LPTR---IFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVM-FRA 142 (331)
Q Consensus 71 ~~l~~L~~L~ls~n~l~~~----~p~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~ 142 (331)
.....++.++++.|.+... ++.. .+....++++|.+..+....... ...+. ....... +..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c----------~~l~~-~l~~~~~~~~e 237 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSC----------ALLDE-VLASGESLLRE 237 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHH----------HHHHH-HHhccchhhHH
Confidence 2356677777777766310 0000 01123344444443321000000 00000 0011222 555
Q ss_pred EEcCCCcCCCC----CchhhhCC-CCCCEEEccCcccccCCc----ccccCCCCCcEEeCCCCcCCCC
Q 044710 143 MDFSSNRFHGE----IPEVLGNF-KSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGR 201 (331)
Q Consensus 143 L~ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~ 201 (331)
+++..|.+.+. ....+..+ ..+++++++.|.|++... ..+..+..++.+.++.|.+...
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 88888888754 22334455 677899999999986543 4455667899999999998753
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.12 E-value=0.041 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=14.9
Q ss_pred CCCccEEEccCCCCCCCCCcccc
Q 044710 73 FQALQIIDLSHNEFTGFLPTRIF 95 (331)
Q Consensus 73 l~~L~~L~ls~n~l~~~~p~~~~ 95 (331)
+++|++|++++|++. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6666544
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.12 E-value=0.041 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=14.9
Q ss_pred CCCccEEEccCCCCCCCCCcccc
Q 044710 73 FQALQIIDLSHNEFTGFLPTRIF 95 (331)
Q Consensus 73 l~~L~~L~ls~n~l~~~~p~~~~ 95 (331)
+++|++|++++|++. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6666544
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.58 E-value=0.13 Score=26.58 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.8
Q ss_pred CCCcEEeccCCcCccCch
Q 044710 24 MKLEVVNVGNNMISDSFP 41 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~~p 41 (331)
++|++|+|++|.++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666654333
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.58 E-value=0.13 Score=26.58 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.8
Q ss_pred CCCcEEeccCCcCccCch
Q 044710 24 MKLEVVNVGNNMISDSFP 41 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~~p 41 (331)
++|++|+|++|.++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666654333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.69 E-value=0.0039 Score=51.26 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=49.6
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 217 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 217 (331)
...+.||++.|++- ..-..|+.++.+..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34455666666554 34444555556666666666666 55666666666666666666655 45556666666666666
Q ss_pred ccCCCc
Q 044710 218 SYNRLW 223 (331)
Q Consensus 218 s~N~ls 223 (331)
..|.|+
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666654
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.01 E-value=0.025 Score=52.85 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecc-cccccCC--CCCCCcCCCCccEEEccCCC
Q 044710 23 CMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSN-RFYGPLC--KSNITFPFQALQIIDLSHNE 85 (331)
Q Consensus 23 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~~~l~~L~~L~ls~n~ 85 (331)
++.|+.|.+..+.-... .-.....++.|+.|+++.+ ......+ .......+.+|+.|+++++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 45666666665533222 2233445666666666652 1111111 00011334566666666655
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.80 E-value=0.078 Score=26.84 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=7.4
Q ss_pred CCCcEEeccCCcCccC
Q 044710 24 MKLEVVNVGNNMISDS 39 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~ 39 (331)
++|++|+|++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3555555555555443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=0.03 Score=45.09 Aligned_cols=81 Identities=25% Similarity=0.196 Sum_probs=50.4
Q ss_pred cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcc-cccCCccccc-CCCCCcEEeCCCC-cCCCCCcccccCCCCCCeE
Q 044710 139 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFE-NMTALESLDLSFN-KLDGRIPEQLLSVTALALL 215 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 215 (331)
.++.+|-++..|..+--+.+..++.++.|.+..+. +.+.--+-++ -.++|+.|+|++| +||...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35667777777766555666777777777777663 2211111111 2467888888877 5766555566677777777
Q ss_pred Eccc
Q 044710 216 NLSY 219 (331)
Q Consensus 216 ~ls~ 219 (331)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.69 E-value=0.0087 Score=49.25 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=45.7
Q ss_pred hhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCC
Q 044710 18 ISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPG 97 (331)
Q Consensus 18 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 97 (331)
..+......+.||++.|++.. +-..|+-++.|..|+++.|.+. ..|..+ .....+..+++..|.++ ..|.+ ++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~--~q~~e~~~~~~~~n~~~-~~p~s-~~k 109 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDA--KQQRETVNAASHKNNHS-QQPKS-QKK 109 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhH--HHHHHHHHHHhhccchh-hCCcc-ccc
Confidence 344555566666666666542 2233455556666666666654 234333 44455555566666655 55544 455
Q ss_pred ccccccccccc
Q 044710 98 MEAMKNVDEQR 108 (331)
Q Consensus 98 l~~L~~l~l~~ 108 (331)
.+.+++++...
T Consensus 110 ~~~~k~~e~k~ 120 (326)
T KOG0473|consen 110 EPHPKKNEQKK 120 (326)
T ss_pred cCCcchhhhcc
Confidence 55555555433
No 81
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=87.95 E-value=0.11 Score=36.40 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=27.6
Q ss_pred cccceEEEehhhhhhhhhhhhhhhhhccCCcceeeeehhhhhhh
Q 044710 277 RFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQK 320 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 320 (331)
...|.+++.+++++++..++|++++.+ ..||+-+.++++++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC---~~~~k~~~SY~H~r 54 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC---PVWYKYLASYRHHR 54 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh---HHHHHHHhcccccc
Confidence 346777665566666666777666666 77888887776654
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.90 E-value=0.85 Score=23.65 Aligned_cols=14 Identities=64% Similarity=0.776 Sum_probs=8.5
Q ss_pred CCCcEEeCCCCcCC
Q 044710 186 TALESLDLSFNKLD 199 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~ 199 (331)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=0.2 Score=40.56 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=45.3
Q ss_pred CCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCC
Q 044710 24 MKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNE 85 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 85 (331)
..++.+|-++..|..+--+.+.+++.++.|.+.++.--+...........++|+.|++++|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 35788999999988777777888888998888888654433322222346799999999774
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.81 E-value=1.4 Score=23.17 Aligned_cols=14 Identities=57% Similarity=0.684 Sum_probs=9.0
Q ss_pred CCCcEEeCCCCcCC
Q 044710 186 TALESLDLSFNKLD 199 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~ 199 (331)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777777665
No 85
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=80.68 E-value=1.2 Score=34.13 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.2
Q ss_pred ehhhhh
Q 044710 285 MGYASG 290 (331)
Q Consensus 285 ~~~~~~ 290 (331)
+|+++|
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 333333
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.19 E-value=1.4 Score=22.77 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=13.1
Q ss_pred CCccEEEccCCCCCCCCCc
Q 044710 74 QALQIIDLSHNEFTGFLPT 92 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~p~ 92 (331)
++|++|+.++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888887 6664
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.69 E-value=1.5 Score=40.85 Aligned_cols=88 Identities=23% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHhccCCEEEcCCC-cCCCCCc----hhhhCCCCCCEEEccCcc-cccCCcccccC-CCCCcEEeCCCCc-CCCCCc-cc
Q 044710 135 KILVMFRAMDFSSN-RFHGEIP----EVLGNFKSLKVLNLSHNS-LTGNIPVSFEN-MTALESLDLSFNK-LDGRIP-EQ 205 (331)
Q Consensus 135 ~~~~~L~~L~ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~-l~~L~~L~Ls~N~-l~~~~~-~~ 205 (331)
...+.|+.|+++++ ......+ .....+..|+.|++++.. +++..-..+.. +++|++|.+.++. +++..- ..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 33566777777652 1111111 223345667777777766 55433333332 5677777766655 444322 23
Q ss_pred ccCCCCCCeEEcccCCC
Q 044710 206 LLSVTALALLNLSYNRL 222 (331)
Q Consensus 206 l~~l~~L~~L~ls~N~l 222 (331)
...++.|++|+++++..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34566677777776544
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=73.55 E-value=1.2 Score=40.18 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCcEEeccCCcC-ccCch-hhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCc-cccCCcc
Q 044710 23 CMKLEVVNVGNNMI-SDSFP-CWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPT-RIFPGME 99 (331)
Q Consensus 23 l~~L~~L~L~~n~l-~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~ 99 (331)
+..+..+++.++.. +..-- ..-..+..|+.|+.+++...+..+......+..+|+.|.++.++.-+..-. .+-.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn-- 344 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN-- 344 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC--
Confidence 34456666666533 32211 111256788888888765422222111113567888888887763211110 11122
Q ss_pred ccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCC--CCCchhhhCCCCCCEEEccCcccc-c
Q 044710 100 AMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFH--GEIPEVLGNFKSLKVLNLSHNSLT-G 176 (331)
Q Consensus 100 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~-~ 176 (331)
...|+.+++..+... +.+...-.+++.|+.|.++++... +
T Consensus 345 -------------------------------------~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 345 -------------------------------------CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred -------------------------------------ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 334444444443321 111112234556666666665432 2
Q ss_pred CC----cccccCCCCCcEEeCCCCcCCC-CCcccccCCCCCCeEEcccCC
Q 044710 177 NI----PVSFENMTALESLDLSFNKLDG-RIPEQLLSVTALALLNLSYNR 221 (331)
Q Consensus 177 ~~----p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~ls~N~ 221 (331)
.. ...-..+..|+.+.|+++.... ..-+.+..+++|+.+++-+++
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 11 1112335567777777775432 233455667777777665553
No 89
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=68.24 E-value=7 Score=30.09 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=15.0
Q ss_pred ceEEEehhhhhhhhhhhhhhhhhc
Q 044710 280 WKMAKMGYASGLVIGLSIGYMVFS 303 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+.+++|+++.+++++++++++|+
T Consensus 51 VIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEecccHHHHHHHHHhheeEE
Confidence 356677877777766555555554
No 90
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=66.59 E-value=4.2 Score=31.31 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=14.7
Q ss_pred ehhhhhhhhhhhhhhhhhccCCcc
Q 044710 285 MGYASGLVIGLSIGYMVFSTGKPQ 308 (331)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (331)
+++++|+++.+++++++++.++||
T Consensus 9 ~~~~ag~a~~~flgYciYFD~KRR 32 (148)
T TIGR00985 9 VVIAAGIAAAAFLGYAIYFDYKRR 32 (148)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 345556566667778887755443
No 91
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.60 E-value=5.5 Score=29.97 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhhhhhhhccCCcceeeeehhhhhhhHHHHHHhhhc
Q 044710 286 GYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRQM 330 (331)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 330 (331)
+++.|+...+++++++++.++ |.-+-..++..+++|+.|+
T Consensus 12 vI~agiag~af~gYciYFd~K-----RrsdP~fk~~lr~rrk~q~ 51 (143)
T KOG4056|consen 12 VIAAGIAGLAFIGYCIYFDKK-----RRSDPDFKKKLRERRKKQA 51 (143)
T ss_pred HHHHHHHHHHHHHHHhhcccc-----cccChhHHHHHHHHHHHHh
Confidence 444555555566666665333 2233334444455555443
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=65.11 E-value=1.1 Score=40.37 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=53.8
Q ss_pred hccCCEEEcCCCc-CCCCCchhh-hCCCCCCEEEccCcccc--cCCcccccCCCCCcEEeCCCCcCCCCC-----ccccc
Q 044710 137 LVMFRAMDFSSNR-FHGEIPEVL-GNFKSLKVLNLSHNSLT--GNIPVSFENMTALESLDLSFNKLDGRI-----PEQLL 207 (331)
Q Consensus 137 ~~~L~~L~ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~ 207 (331)
..+|+.+.++.++ ++..--..+ .+++.|+.+++...... +.+...-.+++.|+.|.|+++.+.... ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 4667777777765 332211222 25678999999887543 112222346789999999988543221 22234
Q ss_pred CCCCCCeEEcccCCCc
Q 044710 208 SVTALALLNLSYNRLW 223 (331)
Q Consensus 208 ~l~~L~~L~ls~N~ls 223 (331)
++..|..+.+++.+..
T Consensus 399 ~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccceeeecCCCCc
Confidence 5667888899988765
No 93
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=64.31 E-value=2.4 Score=27.27 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=0.0
Q ss_pred hhhhhhhhhh
Q 044710 286 GYASGLVIGL 295 (331)
Q Consensus 286 ~~~~~~~~~~ 295 (331)
|.++|+++.+
T Consensus 17 G~Vvgll~ai 26 (64)
T PF01034_consen 17 GGVVGLLFAI 26 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.59 E-value=4.5 Score=37.98 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred CCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecc--cccccCCCCCCCcCCCCccEEEccCCCCCC
Q 044710 23 CMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSN--RFYGPLCKSNITFPFQALQIIDLSHNEFTG 88 (331)
Q Consensus 23 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 88 (331)
.+.+..++|++|++... +...-..-|+|++|+|++| .+... .+..-.+...|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 45566666777766422 1111123466777777776 33211 11100223456666777776653
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.30 E-value=1.4 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=8.7
Q ss_pred Eehhhhhhhhhhhhhhh
Q 044710 284 KMGYASGLVIGLSIGYM 300 (331)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (331)
++++++|+++|++..++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34555666555544333
No 96
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=59.13 E-value=5.4 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=4.3
Q ss_pred hhhhhHHHHHHh
Q 044710 316 GDQQKNVRRARR 327 (331)
Q Consensus 316 ~~~~~~~~~~~~ 327 (331)
+.-++..+|.|-
T Consensus 37 rkId~li~RIre 48 (81)
T PF00558_consen 37 RKIDRLIERIRE 48 (81)
T ss_dssp --CHHHHHHHHC
T ss_pred HhHHHHHHHHHc
Confidence 333444444443
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=51.98 E-value=6.8 Score=27.80 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.4
Q ss_pred ehhhhh
Q 044710 285 MGYASG 290 (331)
Q Consensus 285 ~~~~~~ 290 (331)
.|++++
T Consensus 69 agi~vg 74 (96)
T PTZ00382 69 AGISVA 74 (96)
T ss_pred EEEEee
Confidence 343343
No 98
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=50.23 E-value=8.9 Score=25.00 Aligned_cols=6 Identities=0% Similarity=0.578 Sum_probs=3.3
Q ss_pred ceeeee
Q 044710 308 QWFVRM 313 (331)
Q Consensus 308 ~w~~~~ 313 (331)
-|||+.
T Consensus 52 N~YFK~ 57 (68)
T PF04971_consen 52 NLYFKI 57 (68)
T ss_pred Hhhhhh
Confidence 466654
No 99
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=49.85 E-value=9.9 Score=28.14 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=0.0
Q ss_pred hhhhhhhhhh
Q 044710 293 IGLSIGYMVF 302 (331)
Q Consensus 293 ~~~~~~~~~~ 302 (331)
++++.+++++
T Consensus 92 l~llsg~lv~ 101 (129)
T PF12191_consen 92 LALLSGFLVW 101 (129)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.53 E-value=11 Score=35.60 Aligned_cols=60 Identities=30% Similarity=0.257 Sum_probs=38.7
Q ss_pred ccEEEccCCcCCCC--CchhhhCCCCCcEEeccCC--cCccC-chhhhcCCCCCCeEEeecccccc
Q 044710 2 LRSLDLNNNKLEGP--LPISLAKCMKLEVVNVGNN--MISDS-FPCWLGSLPELKILELRSNRFYG 62 (331)
Q Consensus 2 L~~L~Ls~n~i~~~--~p~~~~~l~~L~~L~L~~n--~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 62 (331)
+..+.|++|++-.. +..--...++|+.|+|++| .+... --..++++ .|++|.+.+|.+..
T Consensus 220 i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 220 ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 45688999988732 2222234588999999999 44321 11123333 59999999998854
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.44 E-value=3.5 Score=30.61 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=13.0
Q ss_pred ceEEEehhhhhhhhhhhhhhhhh
Q 044710 280 WKMAKMGYASGLVIGLSIGYMVF 302 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ 302 (331)
...+++|+++|++..++++++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHH
Confidence 45566777777655544444444
No 102
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=48.78 E-value=24 Score=28.25 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.5
Q ss_pred EEEehhhhhhh
Q 044710 282 MAKMGYASGLV 292 (331)
Q Consensus 282 ~~~~~~~~~~~ 292 (331)
.++++++++++
T Consensus 79 ~iivgvi~~Vi 89 (179)
T PF13908_consen 79 GIIVGVICGVI 89 (179)
T ss_pred eeeeehhhHHH
Confidence 34444444333
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.91 E-value=14 Score=41.76 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred EccCCcCCCCCchhhhCCCCCcEEeccCCcCc
Q 044710 6 DLNNNKLEGPLPISLAKCMKLEVVNVGNNMIS 37 (331)
Q Consensus 6 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 37 (331)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999777788888999999999999876
No 104
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=47.74 E-value=32 Score=29.62 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.8
Q ss_pred Eehhhhhhhhhhhhh
Q 044710 284 KMGYASGLVIGLSIG 298 (331)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (331)
++|++.|+++.++++
T Consensus 216 v~g~~~G~~~L~ll~ 230 (278)
T PF06697_consen 216 VVGVVGGVVLLGLLS 230 (278)
T ss_pred EEEehHHHHHHHHHH
Confidence 455556655544443
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.26 E-value=13 Score=42.02 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=29.3
Q ss_pred eccCCcCccCchhhhcCCCCCCeEEeeccccc
Q 044710 30 NVGNNMISDSFPCWLGSLPELKILELRSNRFY 61 (331)
Q Consensus 30 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 61 (331)
||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999875
No 106
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=41.63 E-value=23 Score=29.02 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.6
Q ss_pred Eehhhhh
Q 044710 284 KMGYASG 290 (331)
Q Consensus 284 ~~~~~~~ 290 (331)
++|++.|
T Consensus 40 ~iaiVAG 46 (221)
T PF08374_consen 40 MIAIVAG 46 (221)
T ss_pred eeeeecc
Confidence 3333333
No 107
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.77 E-value=20 Score=18.15 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.7
Q ss_pred CCCcEEeccCCc
Q 044710 24 MKLEVVNVGNNM 35 (331)
Q Consensus 24 ~~L~~L~L~~n~ 35 (331)
++|+.|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666553
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.43 E-value=5.1 Score=29.67 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=10.4
Q ss_pred hhhhhhhhhhhhhhhhc
Q 044710 287 YASGLVIGLSIGYMVFS 303 (331)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (331)
.++|+|||++|++++.+
T Consensus 11 a~igLvvGi~IG~li~R 27 (138)
T COG3105 11 ALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666665
No 109
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=37.83 E-value=12 Score=25.21 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 044710 287 YASGLVI 293 (331)
Q Consensus 287 ~~~~~~~ 293 (331)
+++|+++
T Consensus 6 ~~~g~~~ 12 (75)
T PF14575_consen 6 IIVGVLL 12 (75)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 110
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=37.65 E-value=11 Score=25.64 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=16.0
Q ss_pred cceEEEehhhhhhhhhhhhhhhhhccCCcce
Q 044710 279 DWKMAKMGYASGLVIGLSIGYMVFSTGKPQW 309 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 309 (331)
.|.+++.+-+.+++.+.+.++++++..+..|
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 4556555555555555555444444344445
No 111
>PRK11677 hypothetical protein; Provisional
Probab=36.32 E-value=6.8 Score=29.66 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=9.3
Q ss_pred hhhhhhhhhhhhhhhc
Q 044710 288 ASGLVIGLSIGYMVFS 303 (331)
Q Consensus 288 ~~~~~~~~~~~~~~~~ 303 (331)
++++++|++|++++.+
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555666666666655
No 112
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.05 E-value=45 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=6.6
Q ss_pred hhhhHHHHHHhhh
Q 044710 317 DQQKNVRRARRRQ 329 (331)
Q Consensus 317 ~~~~~~~~~~~~~ 329 (331)
...+.+.|.|.+|
T Consensus 50 vskkk~k~e~lkq 62 (69)
T PF04689_consen 50 VSKKKMKRERLKQ 62 (69)
T ss_pred ccHHHHHHHHHhc
Confidence 4445555555544
No 113
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=33.62 E-value=14 Score=28.22 Aligned_cols=8 Identities=25% Similarity=-0.151 Sum_probs=3.0
Q ss_pred CCcceeee
Q 044710 305 GKPQWFVR 312 (331)
Q Consensus 305 ~~~~w~~~ 312 (331)
|+++-..+
T Consensus 33 wkhr~~~~ 40 (158)
T PF11770_consen 33 WKHRDSTR 40 (158)
T ss_pred eeccCccc
Confidence 43333333
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=33.18 E-value=31 Score=27.85 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=13.1
Q ss_pred cceEEEehhhhhhhhhhhhhhhhhc
Q 044710 279 DWKMAKMGYASGLVIGLSIGYMVFS 303 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+..+++++-+++++.++++++++.
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhe
Confidence 4456666665555554444444443
No 115
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=32.06 E-value=13 Score=26.99 Aligned_cols=7 Identities=0% Similarity=0.131 Sum_probs=0.0
Q ss_pred eeeeehh
Q 044710 309 WFVRMVE 315 (331)
Q Consensus 309 w~~~~~~ 315 (331)
-|+.+.+
T Consensus 52 GYk~L~~ 58 (118)
T PF14991_consen 52 GYKTLRD 58 (118)
T ss_dssp -------
T ss_pred hhhhhhh
Confidence 3444443
No 116
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.94 E-value=22 Score=26.70 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=7.4
Q ss_pred hhhhhhhhhhhhhhc
Q 044710 289 SGLVIGLSIGYMVFS 303 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~ 303 (331)
+++++|++|++++.+
T Consensus 4 i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 117
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.81 E-value=18 Score=23.47 Aligned_cols=14 Identities=14% Similarity=0.570 Sum_probs=6.5
Q ss_pred hhhhhhhhhhhhhh
Q 044710 289 SGLVIGLSIGYMVF 302 (331)
Q Consensus 289 ~~~~~~~~~~~~~~ 302 (331)
+.+++|+++++++.
T Consensus 26 ~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 26 IAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544444
No 118
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=27.68 E-value=51 Score=29.29 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=9.3
Q ss_pred hhhhhhhhhhhccCCcceeeee
Q 044710 292 VIGLSIGYMVFSTGKPQWFVRM 313 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~w~~~~ 313 (331)
++|+.++++++.+ ...|..+.
T Consensus 291 ~~G~~~~~f~LYK-~g~~~~~~ 311 (354)
T PF05795_consen 291 VLGIPLIFFLLYK-FGSWFNRR 311 (354)
T ss_pred hHHHHHHHHHHhc-cchhhccc
Confidence 3444444444442 34454443
No 119
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.52 E-value=23 Score=24.36 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=9.2
Q ss_pred hhhhhhhhhhhhhhhhhc
Q 044710 286 GYASGLVIGLSIGYMVFS 303 (331)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (331)
.+++++.+.+++.+++++
T Consensus 38 lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344454455555555554
No 120
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.52 E-value=28 Score=31.97 Aligned_cols=9 Identities=11% Similarity=0.014 Sum_probs=3.4
Q ss_pred eehhhhhhh
Q 044710 312 RMVEGDQQK 320 (331)
Q Consensus 312 ~~~~~~~~~ 320 (331)
+.-...+.+
T Consensus 67 ~~p~~~~~~ 75 (409)
T TIGR00540 67 RLGAHSRGW 75 (409)
T ss_pred HccHHHHHH
Confidence 333333333
No 121
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=25.87 E-value=31 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=13.4
Q ss_pred cceEEEehhhhhhhhhhhhhhhhhccCCcceeee
Q 044710 279 DWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVR 312 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 312 (331)
.|.+++.| .|+++.++++.++++ .+.+|.-.
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~C-C~~K~K~~ 71 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCC-CRAKHKTS 71 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHH-hhhhhhhH
Confidence 46665555 344443333333333 33445433
No 122
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=24.47 E-value=44 Score=30.68 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=7.8
Q ss_pred ehhhhhhhhhhhhhhhh
Q 044710 285 MGYASGLVIGLSIGYMV 301 (331)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ 301 (331)
|++++++|||.+|+++.
T Consensus 372 IsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLC 388 (397)
T ss_pred eeehhHHHHHHHHHHHh
Confidence 33444444555554444
No 123
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.23 E-value=1.6e+02 Score=27.61 Aligned_cols=70 Identities=13% Similarity=-0.080 Sum_probs=33.7
Q ss_pred hhCCCCCcEEeccCCcCccCchhhh-cCC-----CCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCC
Q 044710 20 LAKCMKLEVVNVGNNMISDSFPCWL-GSL-----PELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLP 91 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~p~~~-~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 91 (331)
|..-.++ .|++..+.....-+.++ -.+ ..=-++|++.|...+..-.... ..-..+++|+...|++.|..-
T Consensus 296 fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeeccccccccccc
Confidence 4444556 67776666543322221 110 1122356666554331111110 112358899999988876544
No 124
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=24.19 E-value=25 Score=27.36 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=0.0
Q ss_pred Eehhhhhhhh
Q 044710 284 KMGYASGLVI 293 (331)
Q Consensus 284 ~~~~~~~~~~ 293 (331)
++|+++|+++
T Consensus 131 LVGIIVGVLl 140 (162)
T PF05808_consen 131 LVGIIVGVLL 140 (162)
T ss_dssp ----------
T ss_pred eeeehhhHHH
Confidence 3444444443
No 125
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.55 E-value=27 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhccCCcce
Q 044710 289 SGLVIGLSIGYMVFSTGKPQW 309 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~w 309 (331)
+|+++.+++++++++.++||=
T Consensus 3 ag~a~~~~lgYciYFD~KRR~ 23 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYFDYKRRS 23 (121)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhccccccc
Confidence 344455667788876554433
No 126
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.59 E-value=2.1e+02 Score=23.90 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.5
Q ss_pred Eehhhhhhh
Q 044710 284 KMGYASGLV 292 (331)
Q Consensus 284 ~~~~~~~~~ 292 (331)
++.+++|++
T Consensus 62 yVLVG~Gv~ 70 (233)
T PF15345_consen 62 YVLVGSGVA 70 (233)
T ss_pred EehhhHHHH
Confidence 333334433
No 127
>PF15179 Myc_target_1: Myc target protein 1
Probab=22.16 E-value=10 Score=30.06 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=7.9
Q ss_pred ceEEEehhhhhhhhhhhhh
Q 044710 280 WKMAKMGYASGLVIGLSIG 298 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~ 298 (331)
|.-+++++.+.+++|++++
T Consensus 18 ~~~lIlaF~vSm~iGLviG 36 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIG 36 (197)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 128
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.79 E-value=25 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.0
Q ss_pred hhhhhhhhhh
Q 044710 286 GYASGLVIGL 295 (331)
Q Consensus 286 ~~~~~~~~~~ 295 (331)
++.+++++|+
T Consensus 7 aIIv~V~vg~ 16 (38)
T PF02439_consen 7 AIIVAVVVGM 16 (38)
T ss_pred hHHHHHHHHH
Confidence 3334444443
No 129
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.24 E-value=31 Score=22.31 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=9.7
Q ss_pred hhhhhhhhhhhhhhhhc
Q 044710 287 YASGLVIGLSIGYMVFS 303 (331)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (331)
+++++++|+++++++.+
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666554
Done!