Query 044710
Match_columns 331
No_of_seqs 386 out of 3454
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-37 5E-42 304.6 16.8 257 2-262 444-755 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-35 3.1E-39 255.6 14.1 249 1-255 51-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 4.8E-30 1.6E-34 251.4 17.5 240 2-244 396-715 (768)
4 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-30 7.6E-35 256.2 15.1 244 1-251 267-565 (844)
5 3zyi_A Leucine-rich repeat-con 100.0 2.7E-29 9.2E-34 231.8 17.8 229 1-250 76-307 (452)
6 3zyj_A Leucine-rich repeat-con 100.0 3.2E-29 1.1E-33 230.5 17.8 231 1-250 65-296 (440)
7 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-30 1.6E-34 225.5 11.6 186 24-228 50-239 (313)
8 3v47_A TOLL-like receptor 5B a 100.0 1.3E-28 4.3E-33 227.4 16.3 250 1-250 55-412 (455)
9 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.4E-33 217.7 15.4 207 1-229 82-296 (328)
10 1ozn_A Reticulon 4 receptor; N 100.0 5.2E-29 1.8E-33 216.0 12.0 205 2-248 34-240 (285)
11 2z66_A Variable lymphocyte rec 100.0 4.2E-28 1.4E-32 212.5 12.8 231 1-249 29-264 (306)
12 2id5_A Lingo-1, leucine rich r 99.9 3.4E-27 1.2E-31 219.2 17.3 246 1-249 57-336 (477)
13 3v47_A TOLL-like receptor 5B a 99.9 3.8E-27 1.3E-31 217.5 17.1 241 1-243 31-381 (455)
14 1xku_A Decorin; proteoglycan, 99.9 1.6E-26 5.4E-31 204.6 19.4 217 1-224 53-277 (330)
15 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-27 2.1E-31 203.0 16.2 196 3-243 14-211 (285)
16 4fcg_A Uncharacterized protein 99.9 5.5E-27 1.9E-31 207.2 16.0 203 1-223 105-314 (328)
17 2o6q_A Variable lymphocyte rec 99.9 1E-25 3.5E-30 193.7 21.8 202 2-248 18-220 (270)
18 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-26 5.8E-31 204.6 17.3 217 1-227 55-281 (332)
19 3t6q_A CD180 antigen; protein- 99.9 4.4E-27 1.5E-31 224.7 14.1 245 1-249 302-563 (606)
20 2z80_A TOLL-like receptor 2, v 99.9 3.3E-28 1.1E-32 217.4 5.9 229 1-249 53-317 (353)
21 2z62_A TOLL-like receptor 4, v 99.9 2.1E-26 7.1E-31 198.7 17.0 208 1-226 29-240 (276)
22 3zyi_A Leucine-rich repeat-con 99.9 2.6E-26 8.9E-31 211.8 18.6 206 1-225 100-305 (452)
23 3o6n_A APL1; leucine-rich repe 99.9 2.7E-26 9.1E-31 207.8 18.4 241 1-248 70-354 (390)
24 3zyj_A Leucine-rich repeat-con 99.9 2.7E-26 9.3E-31 211.0 18.4 205 1-224 89-293 (440)
25 1p9a_G Platelet glycoprotein I 99.9 8.2E-26 2.8E-30 196.2 19.5 200 1-249 11-211 (290)
26 3oja_B Anopheles plasmodium-re 99.9 3.1E-26 1E-30 218.4 18.3 241 1-248 76-360 (597)
27 3m19_A Variable lymphocyte rec 99.9 4E-26 1.4E-30 194.2 16.2 211 2-258 16-232 (251)
28 1ziw_A TOLL-like receptor 3; i 99.9 2.7E-26 9.1E-31 222.2 16.1 231 2-250 383-626 (680)
29 2o6q_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 191.2 20.4 185 1-227 38-222 (270)
30 4eco_A Uncharacterized protein 99.9 1.2E-26 4.1E-31 222.7 12.9 209 1-229 82-395 (636)
31 1wwl_A Monocyte differentiatio 99.9 8.6E-27 3E-31 204.7 10.9 222 2-244 65-307 (312)
32 3oja_A Leucine-rich immune mol 99.9 3.3E-26 1.1E-30 212.7 13.9 218 1-249 35-253 (487)
33 2id5_A Lingo-1, leucine rich r 99.9 3.3E-26 1.1E-30 212.6 13.7 248 1-251 105-361 (477)
34 4eco_A Uncharacterized protein 99.9 6.4E-26 2.2E-30 217.6 15.0 239 1-247 331-601 (636)
35 2z66_A Variable lymphocyte rec 99.9 9.8E-26 3.4E-30 197.3 14.9 208 1-226 53-264 (306)
36 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-26 1.3E-30 218.3 12.6 213 20-251 346-563 (606)
37 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-25 6.1E-30 214.3 17.0 113 138-250 469-584 (635)
38 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-25 7.1E-30 209.4 16.4 103 1-109 22-125 (520)
39 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.6E-30 220.1 15.1 208 2-229 325-637 (876)
40 3rfs_A Internalin B, repeat mo 99.9 2.6E-24 8.9E-29 185.2 20.5 182 1-228 42-223 (272)
41 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-25 6E-30 196.8 13.0 216 1-248 35-252 (317)
42 4glp_A Monocyte differentiatio 99.9 3.8E-25 1.3E-29 194.0 15.0 203 2-223 93-307 (310)
43 3o6n_A APL1; leucine-rich repe 99.9 7.1E-25 2.4E-29 198.4 17.1 217 1-223 46-308 (390)
44 1wwl_A Monocyte differentiatio 99.9 6.5E-26 2.2E-30 199.1 9.2 204 1-224 96-310 (312)
45 2z80_A TOLL-like receptor 2, v 99.9 1E-25 3.5E-30 201.2 10.3 226 1-227 77-318 (353)
46 3oja_B Anopheles plasmodium-re 99.9 8.6E-25 2.9E-29 208.4 17.0 236 1-243 52-334 (597)
47 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-24 4.1E-29 215.2 17.3 225 2-226 50-354 (844)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.9E-29 206.2 16.2 104 1-110 53-157 (562)
49 3t6q_A CD180 antigen; protein- 99.9 1.5E-24 5.1E-29 207.2 16.5 240 1-244 34-336 (606)
50 2z62_A TOLL-like receptor 4, v 99.9 2.1E-24 7.3E-29 186.1 15.8 183 1-202 53-240 (276)
51 2xwt_C Thyrotropin receptor; s 99.9 1E-24 3.5E-29 184.0 13.1 198 1-242 32-235 (239)
52 1xku_A Decorin; proteoglycan, 99.9 8E-24 2.7E-28 187.2 19.2 231 1-244 32-274 (330)
53 3rfs_A Internalin B, repeat mo 99.9 2.1E-24 7.3E-29 185.7 15.1 178 1-229 64-241 (272)
54 1ziw_A TOLL-like receptor 3; i 99.9 6E-24 2.1E-28 205.7 19.3 224 1-227 26-289 (680)
55 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-24 2.8E-28 198.4 19.6 112 134-249 370-484 (520)
56 4ecn_A Leucine-rich repeat pro 99.9 2.8E-24 9.6E-29 210.8 16.8 236 1-244 574-838 (876)
57 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-24 5.3E-29 207.1 14.7 209 1-228 351-563 (606)
58 1p9a_G Platelet glycoprotein I 99.9 1.4E-23 4.9E-28 182.1 18.7 178 1-224 32-209 (290)
59 2z81_A CD282 antigen, TOLL-lik 99.9 7.8E-24 2.7E-28 199.9 17.9 106 1-108 51-157 (549)
60 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-24 1.6E-28 188.8 15.0 229 2-244 35-275 (332)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-23 5.8E-28 198.2 16.4 59 1-62 101-160 (562)
62 2z63_A TOLL-like receptor 4, v 99.9 1E-23 3.5E-28 199.8 14.9 226 1-249 305-534 (570)
63 3m19_A Variable lymphocyte rec 99.9 9.5E-23 3.2E-27 173.3 17.4 159 1-201 36-194 (251)
64 1h6u_A Internalin H; cell adhe 99.9 9.8E-23 3.4E-27 178.4 16.9 190 1-224 42-231 (308)
65 2z63_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 196.4 13.4 209 1-229 326-537 (570)
66 4fmz_A Internalin; leucine ric 99.9 2.7E-22 9.2E-27 178.5 17.0 228 1-243 111-343 (347)
67 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 179.2 12.6 226 2-245 66-306 (310)
68 2o6s_A Variable lymphocyte rec 99.9 2.3E-22 8E-27 165.9 14.3 175 3-229 10-184 (208)
69 3oja_A Leucine-rich immune mol 99.9 1.2E-23 4.1E-28 195.5 6.8 196 1-227 59-255 (487)
70 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-23 7.8E-28 196.6 8.4 207 1-225 27-238 (549)
71 1o6v_A Internalin A; bacterial 99.9 6.9E-22 2.4E-26 182.9 17.9 210 1-245 178-387 (466)
72 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.8E-26 174.6 16.9 209 1-223 133-346 (347)
73 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-21 1.2E-25 177.4 20.7 204 1-227 43-250 (457)
74 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-23 6.1E-28 183.9 4.9 212 2-243 12-224 (317)
75 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-21 8.9E-26 178.3 18.8 206 1-227 65-281 (457)
76 1o6v_A Internalin A; bacterial 99.9 7.7E-21 2.6E-25 175.9 21.6 224 2-243 48-297 (466)
77 2o6s_A Variable lymphocyte rec 99.9 6.9E-22 2.4E-26 163.1 12.5 162 1-211 29-190 (208)
78 2xot_A Amphoterin-induced prot 99.9 1E-21 3.5E-26 175.7 13.2 177 3-224 21-203 (361)
79 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.4E-26 164.0 12.8 173 1-221 56-237 (239)
80 3cvr_A Invasion plasmid antige 99.9 3.4E-21 1.2E-25 181.0 15.7 182 1-228 60-248 (571)
81 2v70_A SLIT-2, SLIT homolog 2 99.9 5.4E-21 1.9E-25 159.1 14.9 157 27-227 14-170 (220)
82 1h6t_A Internalin B; cell adhe 99.9 1E-20 3.5E-25 164.1 17.0 168 1-224 47-214 (291)
83 2v9t_B SLIT homolog 2 protein 99.9 6.5E-21 2.2E-25 158.6 14.9 87 138-224 80-166 (220)
84 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-20 4.5E-25 180.4 15.8 207 2-225 373-582 (635)
85 3e6j_A Variable lymphocyte rec 99.8 4.7E-20 1.6E-24 154.4 16.5 156 26-227 21-176 (229)
86 1jl5_A Outer protein YOPM; leu 99.8 3E-21 1E-25 177.7 9.9 183 1-223 12-208 (454)
87 2ca6_A RAN GTPase-activating p 99.8 5.9E-23 2E-27 185.5 -1.5 211 1-224 33-288 (386)
88 3e6j_A Variable lymphocyte rec 99.8 5.3E-20 1.8E-24 154.1 16.3 155 3-203 22-176 (229)
89 2ca6_A RAN GTPase-activating p 99.8 1.4E-22 4.9E-27 183.0 0.7 217 1-227 61-320 (386)
90 1m9s_A Internalin B; cell inva 99.8 3.4E-20 1.2E-24 175.8 16.7 168 2-225 45-212 (605)
91 2v9t_B SLIT homolog 2 protein 99.8 3.9E-20 1.3E-24 153.8 14.8 153 3-200 14-166 (220)
92 3goz_A Leucine-rich repeat-con 99.8 8.3E-22 2.8E-26 176.5 4.2 211 2-223 24-266 (362)
93 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.4E-26 173.3 5.2 203 2-220 72-282 (336)
94 2ast_B S-phase kinase-associat 99.8 9.5E-22 3.2E-26 174.1 4.2 212 1-229 94-312 (336)
95 1h6u_A Internalin H; cell adhe 99.8 3.8E-20 1.3E-24 161.9 14.2 204 7-245 26-229 (308)
96 1jl5_A Outer protein YOPM; leu 99.8 4.5E-20 1.5E-24 169.9 15.2 199 1-228 174-377 (454)
97 4ay9_X Follicle-stimulating ho 99.8 2.6E-20 8.8E-25 166.0 12.6 105 138-247 154-259 (350)
98 2xot_A Amphoterin-induced prot 99.8 3.5E-20 1.2E-24 165.8 11.4 179 26-249 20-205 (361)
99 1xeu_A Internalin C; cellular 99.8 3.3E-20 1.1E-24 158.6 10.6 167 2-225 21-187 (263)
100 3goz_A Leucine-rich repeat-con 99.8 3.7E-21 1.3E-25 172.2 4.6 206 4-226 2-241 (362)
101 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.8E-24 170.5 17.1 82 138-228 221-302 (622)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-19 6.3E-24 149.8 13.8 157 50-250 13-170 (220)
103 4ezg_A Putative uncharacterize 99.8 1E-19 3.6E-24 148.7 12.0 155 20-224 40-195 (197)
104 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.2E-24 161.6 12.7 217 3-243 12-233 (350)
105 4ezg_A Putative uncharacterize 99.8 2.5E-19 8.7E-24 146.4 13.2 150 1-200 45-195 (197)
106 1dce_A Protein (RAB geranylger 99.8 8.1E-22 2.8E-26 185.9 -2.1 182 1-228 350-551 (567)
107 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-18 5.9E-23 164.5 18.9 74 162-244 221-295 (622)
108 1h6t_A Internalin B; cell adhe 99.8 5.1E-19 1.7E-23 153.5 13.3 183 6-245 30-212 (291)
109 1w8a_A SLIT protein; signaling 99.8 2.2E-19 7.5E-24 146.1 9.5 91 137-227 53-143 (192)
110 1z7x_W Ribonuclease inhibitor; 99.8 1E-20 3.5E-25 174.7 0.1 222 1-224 143-412 (461)
111 1m9s_A Internalin B; cell inva 99.8 6.5E-19 2.2E-23 167.1 11.2 183 5-244 26-208 (605)
112 1xeu_A Internalin C; cellular 99.8 4E-18 1.4E-22 145.6 13.1 147 1-202 42-188 (263)
113 1w8a_A SLIT protein; signaling 99.8 2.2E-18 7.6E-23 140.2 10.9 133 27-203 11-143 (192)
114 3cvr_A Invasion plasmid antige 99.8 1.2E-18 4.1E-23 163.7 10.5 167 1-210 81-254 (571)
115 4b8c_D Glucose-repressible alc 99.7 2.4E-19 8.2E-24 173.9 3.2 143 40-228 216-359 (727)
116 1z7x_W Ribonuclease inhibitor; 99.7 8.8E-20 3E-24 168.4 -0.0 85 139-223 200-297 (461)
117 4b8c_D Glucose-repressible alc 99.7 4.9E-19 1.7E-23 171.8 3.4 157 3-205 194-360 (727)
118 2ell_A Acidic leucine-rich nuc 99.7 2.3E-17 7.9E-22 131.1 11.7 86 138-223 71-160 (168)
119 2ell_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 130.1 12.1 134 23-200 23-161 (168)
120 2wfh_A SLIT homolog 2 protein 99.7 9.1E-17 3.1E-21 130.6 13.1 111 138-249 31-142 (193)
121 2wfh_A SLIT homolog 2 protein 99.7 1.3E-16 4.6E-21 129.6 14.0 129 51-225 13-141 (193)
122 2o6r_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 127.3 13.5 91 137-227 51-141 (177)
123 2je0_A Acidic leucine-rich nuc 99.7 3.8E-17 1.3E-21 127.2 8.9 81 138-218 64-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.7 5.4E-17 1.8E-21 126.3 9.8 129 23-195 16-149 (149)
125 1dce_A Protein (RAB geranylger 99.7 1.7E-18 6E-23 163.1 -0.2 159 12-217 397-567 (567)
126 2o6r_A Variable lymphocyte rec 99.7 5.7E-16 2E-20 124.1 13.5 133 26-203 9-141 (177)
127 3sb4_A Hypothetical leucine ri 99.6 2.9E-16 9.9E-21 138.5 8.9 171 47-223 100-310 (329)
128 1ds9_A Outer arm dynein; leuci 99.6 1.7E-18 5.8E-23 141.6 -5.4 155 20-223 14-185 (198)
129 3g39_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 120.1 11.9 110 75-227 10-119 (170)
130 3sb4_A Hypothetical leucine ri 99.6 7.7E-16 2.6E-20 135.8 10.3 196 1-217 50-328 (329)
131 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4.2E-20 122.1 9.6 83 139-223 65-153 (176)
132 1ds9_A Outer arm dynein; leuci 99.6 4.5E-18 1.5E-22 139.0 -5.0 150 2-200 20-186 (198)
133 2r9u_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 117.2 11.9 108 76-226 14-121 (174)
134 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-15 6E-20 121.1 7.2 134 19-200 14-154 (176)
135 3ogk_B Coronatine-insensitive 99.6 1.8E-16 6.2E-21 150.7 1.2 40 185-224 462-502 (592)
136 3ogk_B Coronatine-insensitive 99.6 5.3E-17 1.8E-21 154.4 -4.4 221 1-225 271-528 (592)
137 3g39_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 110.3 11.0 108 139-249 10-118 (170)
138 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 108.9 11.0 107 140-249 14-121 (174)
139 3un9_A NLR family member X1; l 99.5 7.8E-16 2.7E-20 137.7 -4.6 164 24-224 72-253 (372)
140 3un9_A NLR family member X1; l 99.4 1E-15 3.5E-20 136.9 -5.3 187 1-223 73-283 (372)
141 2p1m_B Transport inhibitor res 99.4 1.1E-15 3.9E-20 145.3 -5.7 88 135-223 429-519 (594)
142 4fdw_A Leucine rich hypothetic 99.4 1.9E-12 6.4E-17 116.9 14.9 193 1-220 136-333 (401)
143 4fdw_A Leucine rich hypothetic 99.4 4.7E-12 1.6E-16 114.3 15.7 189 3-219 116-309 (401)
144 2ifg_A High affinity nerve gro 99.4 8.4E-13 2.9E-17 117.1 10.0 85 138-223 31-116 (347)
145 2p1m_B Transport inhibitor res 99.4 1.9E-14 6.5E-19 136.8 -1.2 222 1-223 106-385 (594)
146 2ifg_A High affinity nerve gro 99.4 2.4E-12 8.3E-17 114.1 10.7 80 143-224 13-94 (347)
147 2ra8_A Uncharacterized protein 99.0 2E-10 6.9E-15 101.9 5.6 178 2-223 109-320 (362)
148 2ra8_A Uncharacterized protein 99.0 1.4E-10 4.9E-15 102.9 4.3 183 1-221 140-341 (362)
149 4fs7_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 88.8 11.9 195 17-220 155-376 (394)
150 1io0_A Tropomodulin; LRR prote 98.7 2.1E-09 7.1E-14 86.3 -0.1 66 158-223 89-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.6 6.4E-09 2.2E-13 83.4 0.6 62 138-199 93-164 (185)
152 3rw6_A Nuclear RNA export fact 98.6 4.9E-08 1.7E-12 82.4 5.5 67 159-227 167-237 (267)
153 4fs7_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 81.0 12.7 107 1-111 72-197 (394)
154 4gt6_A Cell surface protein; l 98.6 1E-06 3.5E-11 79.2 13.8 81 136-219 263-343 (394)
155 3rw6_A Nuclear RNA export fact 98.5 3.7E-08 1.3E-12 83.2 3.0 79 136-216 168-257 (267)
156 3e4g_A ATP synthase subunit S, 98.2 3.8E-07 1.3E-11 71.6 2.2 82 2-85 63-150 (176)
157 3e4g_A ATP synthase subunit S, 98.2 2.2E-07 7.6E-12 73.0 0.9 86 138-223 61-153 (176)
158 4gt6_A Cell surface protein; l 98.2 2E-05 6.7E-10 70.7 12.8 111 93-222 259-369 (394)
159 4h09_A Hypothetical leucine ri 98.0 7.5E-05 2.6E-09 66.5 13.2 154 19-219 189-342 (379)
160 4h09_A Hypothetical leucine ri 97.9 0.00018 6.3E-09 63.9 14.2 197 1-220 114-320 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.2E-05 4.3E-10 64.2 0.6 86 137-222 69-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 3.4E-05 1.2E-09 61.7 1.9 85 137-221 40-137 (197)
163 3rfe_A Platelet glycoprotein I 97.4 0.00025 8.6E-09 52.8 5.4 35 25-59 32-66 (130)
164 3rfe_A Platelet glycoprotein I 97.3 0.00057 1.9E-08 50.9 6.8 37 187-223 32-68 (130)
165 2ks1_B Epidermal growth factor 78.3 0.45 1.5E-05 27.4 0.1 9 285-293 15-23 (44)
166 2l2t_A Receptor tyrosine-prote 78.1 0.38 1.3E-05 27.7 -0.3 8 285-292 14-21 (44)
167 2lz0_A Uncharacterized protein 76.4 3.4 0.00012 28.5 4.2 48 10-58 6-53 (100)
168 2lz0_A Uncharacterized protein 57.9 14 0.00049 25.3 4.3 45 174-219 8-52 (100)
169 2k1k_A Ephrin type-A receptor 49.6 3.5 0.00012 22.8 0.0 12 285-296 14-25 (38)
170 2k9y_A Ephrin type-A receptor 44.5 5.2 0.00018 22.3 0.2 9 285-293 17-25 (41)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-37 Score=304.60 Aligned_cols=257 Identities=33% Similarity=0.491 Sum_probs=180.4
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+ ..+++|++|++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L 521 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKL 521 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEEC
Confidence 4555555555555555555555555555555555555555555555555555555555555555544 45556666666
Q ss_pred cCCCCCCCCCccccCCccccccccccccccc--cCCcccc------------cee-----------------EEE-----
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY--MGGAFYN------------ESI-----------------TVV----- 125 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~--~~~~~~~------------~~~-----------------~~~----- 125 (331)
++|.+++.+|.. +..+++|+.++++.|... +...+.. ... ...
T Consensus 522 ~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 522 SNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 666665555544 455566666655544210 1100000 000 000
Q ss_pred -------------------EcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCC
Q 044710 126 -------------------MKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 186 (331)
Q Consensus 126 -------------------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 186 (331)
..+..+.....+..|+.||+++|.++|.+|..++.++.|+.|+|++|+++|.+|..++.++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 0000111123357899999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCcCCCCCCCCCCCCCCC
Q 044710 187 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPE 262 (331)
Q Consensus 187 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c~~~~~~~ 262 (331)
+|++|||++|+++|.+|..+..+++|++||+++|+++|.||...+|.++....|.||+.+||.|+. .|.......
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~ 755 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADG 755 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987 787654433
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.1e-35 Score=255.63 Aligned_cols=249 Identities=26% Similarity=0.421 Sum_probs=202.9
Q ss_pred CccEEEccCCcCCC--CCchhhhCCCCCcEEeccC-CcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCcc
Q 044710 1 NLRSLDLNNNKLEG--PLPISLAKCMKLEVVNVGN-NMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQ 77 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 77 (331)
+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..+ ..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCC
Confidence 36788999999988 7888899999999999984 88888888888889999999999998887777766 7788899
Q ss_pred EEEccCCCCCCCCCccccCCcccccccccccccc--ccCCcc-----ccceeEEEE---cCchhhHHHHhccCCEEEcCC
Q 044710 78 IIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE--YMGGAF-----YNESITVVM---KGHDFQLQKILVMFRAMDFSS 147 (331)
Q Consensus 78 ~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~--~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~ 147 (331)
+|++++|.+++.+|.. +..+++|+.|++..|.. .+...+ ....+.+.. .+..+.....+. |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999888777765 67788888888877642 122111 111111111 111222333344 99999999
Q ss_pred CcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 148 NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 148 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
|.+++.+|..+..+++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999999999999999999999999999977666 8889999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCcCCcCCCCCCCC
Q 044710 228 RGNQFNTFENDSYIGNIHLCGEPLTVRC 255 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~n~~lc~~~~~~~c 255 (331)
...++..+..+.+.+|+.+||.|+. .|
T Consensus 286 ~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCccccccChHHhcCCCCccCCCCC-CC
Confidence 9988888999999999999998776 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.8e-30 Score=251.39 Aligned_cols=240 Identities=26% Similarity=0.369 Sum_probs=171.0
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..+++|++|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L 473 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLIL 473 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEe
Confidence 6677777777777777777777777777777777777777777777777777777777766666655 55667777777
Q ss_pred cCCCCCCCCCccccCCccccccccccccccc--cCCc----cccceeEEEEc---CchhhHHHHhccCCEEEcCCCcCCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY--MGGA----FYNESITVVMK---GHDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~--~~~~----~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
++|.+++.+|.. +..+++|+.|++..|... .... .....+.+..+ +..+.....+++|+.|++++|.++|
T Consensus 474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 777776666654 566666766666655321 1111 11111111111 1123334557889999999999888
Q ss_pred CCchhhh----------------------------------------------------------------------CCC
Q 044710 153 EIPEVLG----------------------------------------------------------------------NFK 162 (331)
Q Consensus 153 ~~p~~l~----------------------------------------------------------------------~l~ 162 (331)
.+|..+. .++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 7776543 346
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCC-CCCcccccccc
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN-QFNTFENDSYI 241 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~-~~~~~~~~~~~ 241 (331)
+|+.|++++|+++|.+|..++.++.|+.|+|++|+++|.+|..+..+++|+.||+++|+++|.+|... .+..+..+.+.
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 78999999999999999999999999999999999999999999999999999999999999999752 33445555555
Q ss_pred CCc
Q 044710 242 GNI 244 (331)
Q Consensus 242 ~n~ 244 (331)
+|.
T Consensus 713 ~N~ 715 (768)
T 3rgz_A 713 NNN 715 (768)
T ss_dssp SSE
T ss_pred CCc
Confidence 553
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=256.20 Aligned_cols=244 Identities=22% Similarity=0.248 Sum_probs=179.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+..+ ..+++|++|+
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYID 344 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEE
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEE
Confidence 47889999999998888899999999999999999998888899999999999999999987767666 7889999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccCCccccceeEEE------------------EcCc------hhhHHH
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGGAFYNESITVV------------------MKGH------DFQLQK 135 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~------------------~~~~------~~~~~~ 135 (331)
+++|.+. .++...+..+++|+.|+++.|.. .+........+.+. +... ......
T Consensus 345 L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 9999998 56656688899999998877642 11110001111110 0000 001112
Q ss_pred HhccCCEEEcCCCcCCC------------------------------CCchhhhCCCCCCEEEccCcccccCCcccccCC
Q 044710 136 ILVMFRAMDFSSNRFHG------------------------------EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 185 (331)
Q Consensus 136 ~~~~L~~L~ls~n~l~~------------------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 185 (331)
.+++|+.|++++|.+++ ..+..+..+++|+.|+|++|++++..|..|..+
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 34555556655555542 223446677788888888888887777888888
Q ss_pred CCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCcCCCC
Q 044710 186 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 251 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc~~~~ 251 (331)
++|+.|+|++|++++..+..+. ++|+.|++++|.+++.+|.. +..+..+.+.+|++.|+++.
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 8888888888888876666655 78888888888888887764 45677788899999997653
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-29 Score=231.81 Aligned_cols=229 Identities=20% Similarity=0.175 Sum_probs=194.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|+|++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+ ..+++|++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEE
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEE
Confidence 47899999999999889999999999999999999998888999999999999999999987655555 7799999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccc--cccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRL--EYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL 158 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 158 (331)
+++|.++ .+|...+..+++|+.|++..+. ..+ ....+..+++|+.|++++|.+++ +| .+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~ 214 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI----------------SEGAFEGLFNLKYLNLGMCNIKD-MP-NL 214 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEE----------------CTTTTTTCTTCCEEECTTSCCSS-CC-CC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcccc----------------ChhhccCCCCCCEEECCCCcccc-cc-cc
Confidence 9999999 7777779999999999987632 111 11122347899999999999984 55 47
Q ss_pred hCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCcccc
Q 044710 159 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFEN 237 (331)
Q Consensus 159 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~ 237 (331)
..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 88999999999999999988999999999999999999999888889999999999999999999655543 23556677
Q ss_pred ccccCCcCCcCCC
Q 044710 238 DSYIGNIHLCGEP 250 (331)
Q Consensus 238 ~~~~~n~~lc~~~ 250 (331)
+.+.+|++.|++.
T Consensus 295 L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 295 LHLHHNPWNCDCD 307 (452)
T ss_dssp EECCSSCEECSTT
T ss_pred EEccCCCcCCCCC
Confidence 7888999888765
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=230.53 Aligned_cols=231 Identities=21% Similarity=0.185 Sum_probs=195.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+ ..+++|++|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 142 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELW 142 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEE
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceee
Confidence 47899999999998888999999999999999999998888999999999999999999986555555 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|...|..+++|+.|++..+.... ......+..+++|++|++++|.++ .+|. +..
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~ 205 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP 205 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhcccccCeecCCCCcCc-cccc-cCC
Confidence 9999999 6777779999999999987632100 001112234789999999999999 6664 788
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCcccccc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDS 239 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~ 239 (331)
+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+.. ..+..+..+.
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 999999999999999888999999999999999999999988999999999999999999999655543 2355667778
Q ss_pred ccCCcCCcCCC
Q 044710 240 YIGNIHLCGEP 250 (331)
Q Consensus 240 ~~~n~~lc~~~ 250 (331)
+.+|++.|++.
T Consensus 286 L~~Np~~CdC~ 296 (440)
T 3zyj_A 286 LHHNPWNCNCD 296 (440)
T ss_dssp CCSSCEECSST
T ss_pred cCCCCccCCCC
Confidence 88999988764
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.8e-30 Score=225.49 Aligned_cols=186 Identities=24% Similarity=0.374 Sum_probs=122.9
Q ss_pred CCCcEEeccCCcCcc--CchhhhcCCCCCCeEEeec-ccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccc
Q 044710 24 MKLEVVNVGNNMISD--SFPCWLGSLPELKILELRS-NRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEA 100 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~ 100 (331)
.+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..+ ..+++|++|++++|.+++.+|.. +..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDF-LSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGG-GGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHH-HhCCCC
Confidence 579999999999998 8899999999999999994 99998888877 78999999999999999888875 788999
Q ss_pred cccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC-CCCEEEccCcccccCCc
Q 044710 101 MKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK-SLKVLNLSHNSLTGNIP 179 (331)
Q Consensus 101 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 179 (331)
|++|+++.|... +..+.....+++|++|++++|.+++.+|..+..++ .|++|++++|++++.+|
T Consensus 127 L~~L~Ls~N~l~---------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 127 LVTLDFSYNALS---------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCSSEEE---------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred CCEEeCCCCccC---------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 999999876421 01111112244555555555555544555555544 45555555555554444
Q ss_pred ccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 180 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 180 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
..+..++ |++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 4444443 44444444444444444444444444444444444444443
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.3e-28 Score=227.40 Aligned_cols=250 Identities=19% Similarity=0.214 Sum_probs=148.3
Q ss_pred CccEEEccCCcCCCCC-chhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPL-PISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
+|++|+|++|.+.+.+ +.+|.++++|++|+|++|.+++..|..|.++++|++|++++|++++..+....+..+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 3667777777766443 456777777777777777777666667777777777777777776543333223556677777
Q ss_pred EccCCCCCCCCCccccCCccccccccccccccc-cC-Cccc------------------------------------cce
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MG-GAFY------------------------------------NES 121 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~-~~~~------------------------------------~~~ 121 (331)
++++|.+++..|..++..+++|+.|++..|... .. ..+. ...
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 777777765555555666666666666554210 00 0000 000
Q ss_pred eEEEEcCc--------------------------------------------------------------------hhhH
Q 044710 122 ITVVMKGH--------------------------------------------------------------------DFQL 133 (331)
Q Consensus 122 ~~~~~~~~--------------------------------------------------------------------~~~~ 133 (331)
..+.+.+. .+..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 01111100 0111
Q ss_pred HHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCC
Q 044710 134 QKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 213 (331)
Q Consensus 134 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 213 (331)
...+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|+.+++|++|+|++|++++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 23345666666666666665666666667777777777777666666667777777777777777766666677777777
Q ss_pred eEEcccCCCcccCCCC-CCCCccccccccCCcCCcCCC
Q 044710 214 LLNLSYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEP 250 (331)
Q Consensus 214 ~L~ls~N~lsg~ip~~-~~~~~~~~~~~~~n~~lc~~~ 250 (331)
+|++++|.+++..+.. ..+..+..+.+.+|+.-|.+|
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777777543322 234455555666666666544
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=217.72 Aligned_cols=207 Identities=16% Similarity=0.149 Sum_probs=181.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+ ..+++|++|+
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~ 156 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELS 156 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEE
Confidence 4789999999999 78888999999999999999999 78889999999999999999998 677766 7899999999
Q ss_pred ccCCCCCCCCCccc--------cCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC
Q 044710 81 LSHNEFTGFLPTRI--------FPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 81 ls~n~l~~~~p~~~--------~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
+++|++.+.+|..+ +..+++|+.|++..|... . .+.....+++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------~-lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---------------S-LPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---------------C-CCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---------------c-chHhhcCCCCCCEEEccCCCCC-
Confidence 99999888998764 335888888887765311 1 1122345789999999999999
Q ss_pred CCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 153 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 153 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
.+|..++.+++|++|++++|++.+.+|..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 57778999999999999999999999999999999999999999999999999999999999999999999999974
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.2e-29 Score=216.05 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=99.8
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeeccc-ccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNR-FYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ 80 (331)
|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|+ +....+..+ ..+++|++|+
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~ 111 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLH 111 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEE
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEE
Confidence 4455555555554444445555555555555555554444445555555555555554 333223333 3445555555
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ ++...+..+ ++|++|++++|.+++..+..++.
T Consensus 112 l~~n~l~~-~~~~~~~~l---------------------------------------~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 112 LDRCGLQE-LGPGLFRGL---------------------------------------AALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp CTTSCCCC-CCTTTTTTC---------------------------------------TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcCCE-ECHhHhhCC---------------------------------------cCCCEEECCCCcccccCHhHhcc
Confidence 55555542 222223444 45555555555555444444555
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC-CCCCCcccccc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR-GNQFNTFENDS 239 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~-~~~~~~~~~~~ 239 (331)
+++|++|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|. ...+..+..+.
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 55555555555555544444455555555555555555555555555555555555555555543222 12223334444
Q ss_pred ccCCcCCcC
Q 044710 240 YIGNIHLCG 248 (331)
Q Consensus 240 ~~~n~~lc~ 248 (331)
+.+|+..|+
T Consensus 232 l~~N~~~c~ 240 (285)
T 1ozn_A 232 LNDNPWVCD 240 (285)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCC
Confidence 444444443
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-28 Score=212.47 Aligned_cols=231 Identities=18% Similarity=0.238 Sum_probs=186.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 78 (331)
+|++|+|++|++++..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.. ++..+ ..+++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~--~~l~~L~~ 105 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF--LGLEQLEH 105 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEE--ETCTTCCE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chhhc--CCCCCCCE
Confidence 478999999999965556689999999999999999843 36677789999999999999875 44444 67899999
Q ss_pred EEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC-CCchh
Q 044710 79 IDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG-EIPEV 157 (331)
Q Consensus 79 L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~p~~ 157 (331)
|++++|.+++..+...+..+++|+.|++..+.... ........+++|++|++++|.+++ .+|..
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE---------------CSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCc---------------cchhhcccCcCCCEEECCCCccccccchhH
Confidence 99999999854443568889999999887763110 111122347899999999999986 57888
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCC-C-Ccc
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ-F-NTF 235 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~-~-~~~ 235 (331)
+..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+++..|.... + ..+
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 99999999999999999988889999999999999999999988777889999999999999999988876432 2 255
Q ss_pred ccccccCCcCCcCC
Q 044710 236 ENDSYIGNIHLCGE 249 (331)
Q Consensus 236 ~~~~~~~n~~lc~~ 249 (331)
..+.+.+|+.-|++
T Consensus 251 ~~L~L~~N~~~~~c 264 (306)
T 2z66_A 251 AFLNLTQNDFACTC 264 (306)
T ss_dssp CEEECTTCCEECSG
T ss_pred CEEEccCCCeeccc
Confidence 66667777666543
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=219.22 Aligned_cols=246 Identities=15% Similarity=0.123 Sum_probs=173.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..|.+|.++++|++|+|++|.+++..+..|.++++|++|+|++|++.+..+..+ ..+++|++|+
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~ 134 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLE 134 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEE
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc--cccccCCEEE
Confidence 47788888888887778888888888888888888886666667788888888888888876655555 6677777777
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccC-----Cc------------------------cccceeEEEEcCch
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMG-----GA------------------------FYNESITVVMKGHD 130 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~-----~~------------------------~~~~~~~~~~~~~~ 130 (331)
+++|.+.+..| ..+..+++|+.|++..+.. .+. .. .....+.+......
T Consensus 135 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 77777763333 3366666676666655421 000 00 01111111111000
Q ss_pred ---hhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCccccc
Q 044710 131 ---FQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 207 (331)
Q Consensus 131 ---~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 207 (331)
........+|+.|++++|.++...+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 00001133788899999999855446788999999999999999988888899999999999999999988888999
Q ss_pred CCCCCCeEEcccCCCcccCCCC-CCCCccccccccCCcCCcCC
Q 044710 208 SVTALALLNLSYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 208 ~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~~~~n~~lc~~ 249 (331)
.+++|+.|++++|.+++..+.. ..+..+..+.+.+|+..|.+
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 9999999999999998654432 23445666777888887764
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.8e-27 Score=217.47 Aligned_cols=241 Identities=17% Similarity=0.169 Sum_probs=177.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCc-hhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSF-PCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
+|++|+|++|.|++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++|++++..|..+ ..+++|++|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCEE
Confidence 4899999999999888999999999999999999997555 6689999999999999999998778777 789999999
Q ss_pred EccCCCCCCCCCc-cccCCcccccccccccccc-cc-CC-----ccccceeEEEEc---CchhhHHH-------------
Q 044710 80 DLSHNEFTGFLPT-RIFPGMEAMKNVDEQRRLE-YM-GG-----AFYNESITVVMK---GHDFQLQK------------- 135 (331)
Q Consensus 80 ~ls~n~l~~~~p~-~~~~~l~~L~~l~l~~~~~-~~-~~-----~~~~~~~~~~~~---~~~~~~~~------------- 135 (331)
++++|.+++..|. ..+..+++|+.|++..+.. .. .. ......+.+..+ ........
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999999865443 4588899999999987642 11 11 111112211111 00000000
Q ss_pred ---------------------Hhc--------------------------------------------------------
Q 044710 136 ---------------------ILV-------------------------------------------------------- 138 (331)
Q Consensus 136 ---------------------~~~-------------------------------------------------------- 138 (331)
.++
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 012
Q ss_pred -------cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCC
Q 044710 139 -------MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 211 (331)
Q Consensus 139 -------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 211 (331)
+|+.|++++|.+++..|..++.+++|++|++++|++++..|..|..+++|++|+|++|.+++..|..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 4555555555555556777788888888888888888777888888888888888888888777888888888
Q ss_pred CCeEEcccCCCcccCCCCC-CCCccccccccCC
Q 044710 212 LALLNLSYNRLWGRIPRGN-QFNTFENDSYIGN 243 (331)
Q Consensus 212 L~~L~ls~N~lsg~ip~~~-~~~~~~~~~~~~n 243 (331)
|++|++++|.+++..|... .+..+..+.+.+|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCC
Confidence 8888888888887766532 3344444444444
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.6e-26 Score=204.59 Aligned_cols=217 Identities=24% Similarity=0.237 Sum_probs=145.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|... .++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~----~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM----PKTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC----CTTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh----cccccEEE
Confidence 4788999999999877778999999999999999999888999999999999999999987 455544 37899999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccccc----CCcc----ccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYM----GGAF----YNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
+++|.++ .++...+..+++|+.|++..+.... ...+ ....+.+..+....-.....++|++|++++|.+++
T Consensus 128 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 128 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206 (330)
T ss_dssp CCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred CCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc
Confidence 9999998 5665668889999998887764211 1111 11111111000000000002456666666666665
Q ss_pred CCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 153 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 153 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
..|..+..+++|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 55566666666666666666666555556666666666666666666 455556666666666666666664
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.1e-27 Score=202.98 Aligned_cols=196 Identities=19% Similarity=0.193 Sum_probs=164.6
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc--CCccCCCEEeCC
Confidence 46889999998 567554 4689999999999998888889999999999999999988767766 789999999999
Q ss_pred CCC-CCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 83 HNE-FTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 83 ~n~-l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
+|. +. .++...+.. +++|++|++++|.+++..|..+..+
T Consensus 89 ~n~~l~-~~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 89 DNAQLR-SVDPATFHG---------------------------------------LGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp SCTTCC-CCCTTTTTT---------------------------------------CTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCcc-ccCHHHhcC---------------------------------------CcCCCEEECCCCcCCEECHhHhhCC
Confidence 997 66 443332332 5677899999999998888899999
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCC-CCCccccccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN-QFNTFENDSY 240 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~-~~~~~~~~~~ 240 (331)
++|++|++++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|++++|.+++..|... .+..+..+.+
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 999999999999998777789999999999999999997777789999999999999999998877543 3345555555
Q ss_pred cCC
Q 044710 241 IGN 243 (331)
Q Consensus 241 ~~n 243 (331)
.+|
T Consensus 209 ~~n 211 (285)
T 1ozn_A 209 FAN 211 (285)
T ss_dssp CSS
T ss_pred CCC
Confidence 555
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.5e-27 Score=207.24 Aligned_cols=203 Identities=19% Similarity=0.234 Sum_probs=180.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCC-------CcCC
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNI-------TFPF 73 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~~~l 73 (331)
+|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.++++|++|++++|++.+.+|..+. +..+
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 5899999999999 89999999999999999999999 7788999999999999999999888887651 1248
Q ss_pred CCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC
Q 044710 74 QALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE 153 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 153 (331)
++|++|++++|.++ .+|.. +..+++|+.|++..|... .... ....+++|++|++++|.+.+.
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~---------------~l~~-~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLS---------------ALGP-AIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCC---------------CCCG-GGGGCTTCCEEECTTCTTCCB
T ss_pred CCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCC---------------cCch-hhccCCCCCEEECcCCcchhh
Confidence 99999999999999 88876 788999999998876421 1111 234578999999999999999
Q ss_pred CchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 154 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 154 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+|..++.+++|+.|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988775
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1e-25 Score=193.73 Aligned_cols=202 Identities=20% Similarity=0.253 Sum_probs=132.8
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
.+.+++++++++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|+++...+..+ ..+++|++|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEEC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEEC
Confidence 568999999998 5676555 589999999999998777789999999999999999986444433 67899999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.++ .+|...+..++ +|++|++++|.+++..+..+..+
T Consensus 93 ~~n~l~-~~~~~~~~~l~---------------------------------------~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLV---------------------------------------NLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp CSSCCC-CCCTTTTTTCS---------------------------------------SCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcCC-cCCHhHccccc---------------------------------------CCCEEECCCCccCeeCHHHhCcC
Confidence 999998 56655555544 44555566666655445555556
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccccccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDSY 240 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~~ 240 (331)
++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+.. ..+..+..+.+
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 66666666666665444444555666666666666665554445555566666666666665332221 12233444444
Q ss_pred cCCcCCcC
Q 044710 241 IGNIHLCG 248 (331)
Q Consensus 241 ~~n~~lc~ 248 (331)
.+|++.|+
T Consensus 213 ~~N~~~c~ 220 (270)
T 2o6q_A 213 QENPWDCT 220 (270)
T ss_dssp CSSCBCCS
T ss_pred cCCCeeCC
Confidence 55544443
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.7e-26 Score=204.58 Aligned_cols=217 Identities=21% Similarity=0.217 Sum_probs=170.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|++++|++. .+|... .++|++|+
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~----~~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL----PSSLVELR 129 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC----CTTCCEEE
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc----cccCCEEE
Confidence 4789999999999888889999999999999999999888999999999999999999997 455554 27999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc----cCCccc---cceeEEEE---cCchhhHHHHhccCCEEEcCCCcC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY----MGGAFY---NESITVVM---KGHDFQLQKILVMFRAMDFSSNRF 150 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~----~~~~~~---~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~n~l 150 (331)
+++|.++ .+|...+..+++|+.|++..+... ....+. ...+.+.. ...+.. ..++|++|++++|.+
T Consensus 130 l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD---LPETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS---SCSSCSCCBCCSSCC
T ss_pred CCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc---ccCCCCEEECCCCcC
Confidence 9999998 677777899999999998876432 111111 11111100 011111 125788888888888
Q ss_pred CCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 151 HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 8777788888889999999999988777778888889999999999888 677778888889999999998885443
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.4e-27 Score=224.73 Aligned_cols=245 Identities=20% Similarity=0.180 Sum_probs=173.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchh-hhcCCCCCCeEEeecccccccC--CCCCCCcCCCCcc
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPC-WLGSLPELKILELRSNRFYGPL--CKSNITFPFQALQ 77 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~ 77 (331)
+|++|++++|.+++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+ ..+++|+
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~ 379 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQ 379 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCC
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCC
Confidence 478899999999887788888888999999999888765544 4788888888888888887654 4444 6788888
Q ss_pred EEEccCCCCCCCCCccccCCccccccccccccccccC-------CccccceeEEEE---cCchhhHHHHhccCCEEEcCC
Q 044710 78 IIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMG-------GAFYNESITVVM---KGHDFQLQKILVMFRAMDFSS 147 (331)
Q Consensus 78 ~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~ 147 (331)
+|++++|.+.+..| ..+..+++|+.|++..+..... .......+.+.. ....+.....+++|++|++++
T Consensus 380 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 380 SLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp EEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 88888888874444 4477788888888776542111 011111111111 111223334467888888888
Q ss_pred CcCCCC---CchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 148 NRFHGE---IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 148 n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
|.+++. .+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..++.| +|++++|.+++
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 888752 33567788888888888888887778888888888888888888888888888888888 88888888887
Q ss_pred cCCCC-CCCCccccccccCCcCCcCC
Q 044710 225 RIPRG-NQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 225 ~ip~~-~~~~~~~~~~~~~n~~lc~~ 249 (331)
..|.. ..+..+..+.+.+|++.|.+
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCHhhcccCCCCCEEeCCCCCccccC
Confidence 66643 22334455666677666643
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-28 Score=217.43 Aligned_cols=229 Identities=19% Similarity=0.237 Sum_probs=165.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+ ..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEE
Confidence 47899999999997777789999999999999999998888889999999999999999986433323 6789999999
Q ss_pred ccCCCCCCCCCc-cccCCccccccccccccc--cccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchh
Q 044710 81 LSHNEFTGFLPT-RIFPGMEAMKNVDEQRRL--EYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEV 157 (331)
Q Consensus 81 ls~n~l~~~~p~-~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 157 (331)
+++|.++ .+|. ..+..+++|+.|++..+. ..+. ......+++|++|++++|.+++..|..
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ----------------RKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC----------------TTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC----------------HHHccCCCCCCEEECCCCCcCccCHHH
Confidence 9999998 6666 668889999999888762 1111 111122556666677777666666666
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCC-------------------------------Ccccc
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR-------------------------------IPEQL 206 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------------------------------~~~~l 206 (331)
+..+++|++|++++|.+....+..+..+++|++|++++|.+++. +|..+
T Consensus 194 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 66666666677766666533223334456666666666666653 34456
Q ss_pred cCCCCCCeEEcccCCCcccCCCC--CCCCccccccccCCcCCcCC
Q 044710 207 LSVTALALLNLSYNRLWGRIPRG--NQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 207 ~~l~~L~~L~ls~N~lsg~ip~~--~~~~~~~~~~~~~n~~lc~~ 249 (331)
..+++|+.|++++|.++ .+|.. ..+..+..+.+.+|+..|.+
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 67888888888888888 56654 34556666777777777654
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.1e-26 Score=198.69 Aligned_cols=208 Identities=20% Similarity=0.128 Sum_probs=110.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEE
Confidence 36777777777776666677777777777777777776666677777777777777777766555544 5677777777
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+.+ ++...+..+++|+.|++..|..... ..+.....+++|++|++++|.+++..+..+..
T Consensus 107 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 107 AVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCCCccc-cCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 77777763 3333345555554444443321000 00111122344444444444444433333333
Q ss_pred CCCCC----EEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccC
Q 044710 161 FKSLK----VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 226 (331)
Q Consensus 161 l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~i 226 (331)
+++|+ .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 33333 444444444433332222 224444455444444433333444444444455444444433
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.6e-26 Score=211.83 Aligned_cols=206 Identities=18% Similarity=0.143 Sum_probs=182.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|+|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++....+..+ ..+++|++|+
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~ 177 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLD 177 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEE
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEe
Confidence 58999999999999888999999999999999999998888889999999999999999986555455 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|+..+.++...+..+++|+.|+++.|...... ....+++|+.|++++|.+++..|..|..
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------------NLTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----------------CCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccc-----------------cccccccccEEECcCCcCcccCcccccC
Confidence 99966666888888999999999998876421100 0133789999999999999888999999
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCccc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+...
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999999999999999999999999999999988888889999999999999998743
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-26 Score=207.76 Aligned_cols=241 Identities=19% Similarity=0.189 Sum_probs=154.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..+.+|..+++|++|++++|.+++..|..|.++++|++|++++|++....+..+ ..+++|++|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~ 147 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLS 147 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEE
Confidence 47788888888887777788888888888888888887777778888888888888888874333323 5678888888
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc-cC-----Ccc----------------cccee----------------
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MG-----GAF----------------YNESI---------------- 122 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~-----~~~----------------~~~~~---------------- 122 (331)
+++|.++ .++...+..+++|+.|++..+... .. ... ....+
T Consensus 148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred CCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 8888887 444445777888888877665311 00 000 00000
Q ss_pred ---EEEEcC---chhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCC
Q 044710 123 ---TVVMKG---HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196 (331)
Q Consensus 123 ---~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 196 (331)
.+.+.. ........+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|+|++|
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 000000 001123345667777777777766666667777777777777777763 4555566677777777777
Q ss_pred cCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCcC
Q 044710 197 KLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 248 (331)
Q Consensus 197 ~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc~ 248 (331)
+++ .+|..+..+++|+.|++++|.++.. | ...+..+..+.+.+|++-|.
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred cce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 776 4455566667777777777777643 3 23344555666666665553
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=210.98 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=181.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.|++..+.+|.++++|++|+|++|.+++..+..|..+++|++|+|++|++....+..+ ..+++|++|+
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~ 166 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLD 166 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeC
Confidence 58999999999998888999999999999999999998878889999999999999999987655555 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|+..+.++...+.++++|+.|++..|...... ....+++|+.|++++|.+++..|..|..
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-----------------NLTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-----------------CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCcccc-----------------ccCCCcccCEEECCCCccCccChhhhcc
Confidence 99976666888888999999999998876421100 0133789999999999999888999999
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 9999999999999999999999999999999999999998888889999999999999999874
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=8.2e-26 Score=196.24 Aligned_cols=200 Identities=24% Similarity=0.250 Sum_probs=158.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++++++++|.++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..+. ..+++|++|+
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEE
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCEEE
Confidence 4789999999998 5666654 5899999999999988889999999999999999999864332 5689999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|.. +.. +++|+.|++++|.+++..|..|..
T Consensus 84 Ls~N~l~-~l~~~-~~~---------------------------------------l~~L~~L~l~~N~l~~l~~~~~~~ 122 (290)
T 1p9a_G 84 LSHNQLQ-SLPLL-GQT---------------------------------------LPALTVLDVSFNRLTSLPLGALRG 122 (290)
T ss_dssp CCSSCCS-SCCCC-TTT---------------------------------------CTTCCEEECCSSCCCCCCSSTTTT
T ss_pred CCCCcCC-cCchh-hcc---------------------------------------CCCCCEEECCCCcCcccCHHHHcC
Confidence 9999998 66653 222 566788888888888666677888
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCcccccc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDS 239 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~ 239 (331)
+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|.++ .+|.. .....+..+.
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence 888888888888888777777788888888888888888666667778888888888888888 45543 2333455566
Q ss_pred ccCCcCCcCC
Q 044710 240 YIGNIHLCGE 249 (331)
Q Consensus 240 ~~~n~~lc~~ 249 (331)
+.+|++.|.+
T Consensus 202 L~~Np~~C~c 211 (290)
T 1p9a_G 202 LHGNPWLCNC 211 (290)
T ss_dssp CCSCCBCCSG
T ss_pred eCCCCccCcC
Confidence 6777777754
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-26 Score=218.41 Aligned_cols=241 Identities=19% Similarity=0.190 Sum_probs=171.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..+ ..+++|++|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~ 153 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLS 153 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh--ccCCCCCEEE
Confidence 47888999998888777888888899999999999888888888888899999999988875444333 6788899999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc-cC-----Ccc----------------cccee----------------
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MG-----GAF----------------YNESI---------------- 122 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~-----~~~----------------~~~~~---------------- 122 (331)
+++|.+++. +...+..+++|+.|++..|... .. ... ....+
T Consensus 154 Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 154 MSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 999988854 4444788888888887765311 10 000 00000
Q ss_pred ---EEEEcC---chhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCC
Q 044710 123 ---TVVMKG---HDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 196 (331)
Q Consensus 123 ---~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 196 (331)
.+.+.+ ........+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 000000 011223446778888888888887778888888888888888888885 5666677888888888888
Q ss_pred cCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCcC
Q 044710 197 KLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 248 (331)
Q Consensus 197 ~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc~ 248 (331)
.++ .+|..+..+++|+.|++++|.+++. | ...+..+..+.+.+|++-|.
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence 887 5666777788888888888888754 3 23455666667777776664
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=4e-26 Score=194.18 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=167.8
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
.++++++++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..+ ..+++|++|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEEC
Confidence 468999999998 5776665 589999999999999888899999999999999999998766655 78999999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.++ .+|...+.. +++|++|++++|.+++..+..+..+
T Consensus 91 ~~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDH---------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp TTSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCccc-ccChhHhcc---------------------------------------cCCCCEEEcCCCcCCCcChhHhccC
Confidence 999998 555444433 5677899999999997777778999
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCc------c
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNT------F 235 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~------~ 235 (331)
++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|.+++..+....+.. .
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~ 210 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSN 210 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGG
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhccc
Confidence 9999999999999977777899999999999999999988888899999999999999999876433211111 1
Q ss_pred ccccccCCcCCcCCCCCCCCCCC
Q 044710 236 ENDSYIGNIHLCGEPLTVRCSND 258 (331)
Q Consensus 236 ~~~~~~~n~~lc~~~~~~~c~~~ 258 (331)
......|+ .+|+.+....|..+
T Consensus 211 ~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 211 KVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp GBCC--------CCGGGCBBTTS
T ss_pred ceeeccCc-ccccCCCcCccCCC
Confidence 11122233 35666666677654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.7e-26 Score=222.18 Aligned_cols=231 Identities=19% Similarity=0.167 Sum_probs=167.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCch-hhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFP-CWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
|+.|++++|++++..|.+|..+++|++|++++|.+++.+| ..|.++++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~ 460 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLM 460 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEE
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccch
Confidence 5667777777777677777777777777777777765544 567777777777777777766555554 5677777777
Q ss_pred ccCCCCC--CCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCC----
Q 044710 81 LSHNEFT--GFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEI---- 154 (331)
Q Consensus 81 ls~n~l~--~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~---- 154 (331)
+++|.+. +.+|.. +..+++|+.|+++.|.. .......+..+++|++|++++|.+++..
T Consensus 461 l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l---------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 461 LRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI---------------ANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCC---------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred hccccccccccCCcc-cccCCCCCEEECCCCCC---------------CcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 7777765 344443 66777777777766531 1112222344788999999999987532
Q ss_pred ----chhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCC
Q 044710 155 ----PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN 230 (331)
Q Consensus 155 ----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~ 230 (331)
+..+..+++|++|++++|+++...+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+++..|...
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 1237888999999999999995555678999999999999999997777778899999999999999997666432
Q ss_pred --CCCccccccccCCcCCcCCC
Q 044710 231 --QFNTFENDSYIGNIHLCGEP 250 (331)
Q Consensus 231 --~~~~~~~~~~~~n~~lc~~~ 250 (331)
.+..+..+.+.+|++.|+++
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBCCC
T ss_pred cccccccCEEEccCCCcccCCc
Confidence 34566677778888888654
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-25 Score=191.21 Aligned_cols=185 Identities=23% Similarity=0.274 Sum_probs=161.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|++++..+.+|.++++|++|++++|.++...+..|.++++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEE
Confidence 47899999999998777899999999999999999997777778999999999999999987555444 7789999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ ++...+.. +++|++|++++|.+++..+..+..
T Consensus 116 l~~n~l~~-~~~~~~~~---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 116 LDRNQLKS-LPPRVFDS---------------------------------------LTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CCSSCCCC-CCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCccCe-eCHHHhCc---------------------------------------CcCCCEEECCCCcCCccCHhHccC
Confidence 99999984 44433332 567789999999999766677899
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++....+
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999999999998777789999999999999999998777788999999999999999986544
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.2e-26 Score=222.65 Aligned_cols=209 Identities=21% Similarity=0.273 Sum_probs=166.6
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCc---------------------------------------------
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM--------------------------------------------- 35 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~--------------------------------------------- 35 (331)
.++.|+|++|.++|.+|.+|+++++|++|+|++|.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 36789999999999999999999999999999984
Q ss_pred ---------------------------------CccCchhhhcCCCCCCeEEeeccccccc-----------------CC
Q 044710 36 ---------------------------------ISDSFPCWLGSLPELKILELRSNRFYGP-----------------LC 65 (331)
Q Consensus 36 ---------------------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~ 65 (331)
+++ +|..|+++++|++|+|++|++++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 345 788899999999999999999985 88
Q ss_pred CCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcC-chhhHHHHh------c
Q 044710 66 KSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKG-HDFQLQKIL------V 138 (331)
Q Consensus 66 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~ 138 (331)
..+.+..+++|++|++++|.+.+.+|.. +..+++|+.|+++.|... .+ ..+.....+ +
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l--------------~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGI--------------SGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTS--------------CHHHHHHHHHHHHHSGGGG
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCC--------------ccccchHHHHhhhccccCC
Confidence 8872228999999999999999999966 789999999998876300 00 011112223 7
Q ss_pred cCCEEEcCCCcCCCCCch--hhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCC-CCeE
Q 044710 139 MFRAMDFSSNRFHGEIPE--VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA-LALL 215 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L 215 (331)
+|++|++++|.++ .+|. .++.+++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 8888888888888 7777 78888888888888888887777 7777777888888887777 66666777777 7777
Q ss_pred EcccCCCcccCCCC
Q 044710 216 NLSYNRLWGRIPRG 229 (331)
Q Consensus 216 ~ls~N~lsg~ip~~ 229 (331)
++++|.++ .+|..
T Consensus 383 ~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 383 SFAHNKLK-YIPNI 395 (636)
T ss_dssp ECCSSCCS-SCCSC
T ss_pred EccCCcCc-ccchh
Confidence 77777777 66654
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.6e-27 Score=204.66 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=141.9
Q ss_pred ccEEEccCCcCC-CCCchhhh-------CCCCCcEEeccCCcCccCchhhh--cCCCCCCeEEeecccccccCCCCCCCc
Q 044710 2 LRSLDLNNNKLE-GPLPISLA-------KCMKLEVVNVGNNMISDSFPCWL--GSLPELKILELRSNRFYGPLCKSNITF 71 (331)
Q Consensus 2 L~~L~Ls~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~ 71 (331)
|+.|+|++|.++ ..+|..+. ++++|++|+|++|.+++..|..+ ..+++|++|+|++|++++. |..+ .
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--A 141 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--H
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--H
Confidence 456677777773 44565554 67777777777777777777655 6777777777777777665 4333 3
Q ss_pred CC-----CCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhH--HHHhccCCEEE
Q 044710 72 PF-----QALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQL--QKILVMFRAMD 144 (331)
Q Consensus 72 ~l-----~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~ 144 (331)
.+ ++|++|++++|.+++ ++...+..+++|+.|+++.|...-.. ..... ...+++|++|+
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~~~~~l~~L~~L~ 207 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGER-------------GLISALCPLKFPTLQVLA 207 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHH-------------HHHHHSCTTSCTTCCEEE
T ss_pred HHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcch-------------HHHHHHHhccCCCCCEEE
Confidence 33 677777777777774 34334677777777777665310000 00000 02256778888
Q ss_pred cCCCcCCC--CCc-hhhhCCCCCCEEEccCcccccCCc-ccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccC
Q 044710 145 FSSNRFHG--EIP-EVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 145 ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
+++|.+++ .++ ..+..+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|
T Consensus 208 L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred CCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 88887773 122 334567788888888888877664 44556778888888888887 5666554 67788888888
Q ss_pred CCcccCCCCCCCCccccccccCCc
Q 044710 221 RLWGRIPRGNQFNTFENDSYIGNI 244 (331)
Q Consensus 221 ~lsg~ip~~~~~~~~~~~~~~~n~ 244 (331)
++++. |....+..+..+.+.+|+
T Consensus 285 ~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 285 RLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCCC-hhHhhCCCCCEEeccCCC
Confidence 88765 554455555555566654
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-26 Score=212.73 Aligned_cols=218 Identities=23% Similarity=0.200 Sum_probs=174.5
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..|.+|..+++|++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------ECTTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------CCCCcCEEE
Confidence 47899999999998888999999999999999999997766 899999999999999998632 237899999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhh-
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLG- 159 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~- 159 (331)
+++|.+++..+ ..+++|+.|+++.|.. .+..+..+..+++|+.|++++|.+++..|..+.
T Consensus 106 L~~N~l~~~~~----~~l~~L~~L~L~~N~l---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 106 AANNNISRVSC----SRGQGKKNIYLANNKI---------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp CCSSCCCCEEE----CCCSSCEEEECCSSCC---------------CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CcCCcCCCCCc----cccCCCCEEECCCCCC---------------CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 99999985433 2456788888776531 111122224478999999999999988888876
Q ss_pred CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCcccccc
Q 044710 160 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDS 239 (331)
Q Consensus 160 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~ 239 (331)
.+++|+.|+|++|.+++..+ ...+++|++|+|++|.+++..| .+..+++|+.|++++|.+++..+....+..+..+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 79999999999999996633 4468999999999999997555 48889999999999999997433333445677778
Q ss_pred ccCCcCCcCC
Q 044710 240 YIGNIHLCGE 249 (331)
Q Consensus 240 ~~~n~~lc~~ 249 (331)
+.+|+..|+.
T Consensus 244 l~~N~l~c~~ 253 (487)
T 3oja_A 244 LRGNGFHCGT 253 (487)
T ss_dssp CTTCCBCHHH
T ss_pred cCCCCCcCcc
Confidence 8899888764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=212.57 Aligned_cols=248 Identities=19% Similarity=0.168 Sum_probs=195.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+ ..+++|+.|+
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ 182 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLR 182 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEe
Confidence 58999999999998889999999999999999999998888899999999999999999986443334 6789999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc--ccCC-c---cccceeEEEEc---CchhhHHHHhccCCEEEcCCCcCC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE--YMGG-A---FYNESITVVMK---GHDFQLQKILVMFRAMDFSSNRFH 151 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~--~~~~-~---~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~ 151 (331)
+++|.+. .++...+..+++|+.|++..+.. .+.. . .....+.+..+ ..+......+++|+.|++++|.++
T Consensus 183 l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 9999998 45555688899999998876431 1111 1 12223333222 223334556889999999999999
Q ss_pred CCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCC
Q 044710 152 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ 231 (331)
Q Consensus 152 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~ 231 (331)
+..+..+..+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+....
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH
Confidence 88888899999999999999999999999999999999999999999988888889999999999999999865432111
Q ss_pred CCccccccccCCcCCcCCCC
Q 044710 232 FNTFENDSYIGNIHLCGEPL 251 (331)
Q Consensus 232 ~~~~~~~~~~~n~~lc~~~~ 251 (331)
+.......+.++...|..|.
T Consensus 342 ~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 342 FRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp HTTTTSSCCTTCCCBEEESG
T ss_pred HhhhhccccCccCceeCCch
Confidence 11222344556666665543
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=6.4e-26 Score=217.57 Aligned_cols=239 Identities=18% Similarity=0.200 Sum_probs=159.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCC-CCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPE-LKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
+|++|++++|.++|.+| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+....+++|++|
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 46777777777777777 7777777777777777776 56666777777 777777777776 45555422233467777
Q ss_pred EccCCCCCCCCCccccC-------Ccccccccccccccc-ccCCc-----cccceeEEEEcC---chhhHH-------HH
Q 044710 80 DLSHNEFTGFLPTRIFP-------GMEAMKNVDEQRRLE-YMGGA-----FYNESITVVMKG---HDFQLQ-------KI 136 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~-------~l~~L~~l~l~~~~~-~~~~~-----~~~~~~~~~~~~---~~~~~~-------~~ 136 (331)
++++|.+++.+|.. +. .+.+|+.|+++.|.. .+... .....+.+..+. .+.... ..
T Consensus 408 ~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 408 DFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp ECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred ECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 77777776665544 33 455666666655431 11110 001111111110 011111 11
Q ss_pred hccCCEEEcCCCcCCCCCchhhh--CCCCCCEEEccCcccccCCcccccCCCCCcEEeC------CCCcCCCCCcccccC
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL------SFNKLDGRIPEQLLS 208 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~l~~ 208 (331)
+++|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 238888999999888 7887776 88899999999999886 7888888899999988 457788888888888
Q ss_pred CCCCCeEEcccCCCcccCCCCCCCCccccccccCCcCCc
Q 044710 209 VTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 247 (331)
Q Consensus 209 l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc 247 (331)
+++|++|++++|.+ +.+|.... ..+..+.+.+|+..|
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 89999999999998 67887533 566666677776655
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=9.8e-26 Score=197.34 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=175.2
Q ss_pred CccEEEccCCcCCCC--CchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCC-CCCCCcCCCCcc
Q 044710 1 NLRSLDLNNNKLEGP--LPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLC-KSNITFPFQALQ 77 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~ 77 (331)
+|++|+|++|.++.. .+..+..+++|++|++++|.++. +|..+..+++|++|++++|++.+..+ ..+ ..+++|+
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~ 129 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLI 129 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCC
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCC
Confidence 589999999999843 47888899999999999999984 66678999999999999999986544 233 7899999
Q ss_pred EEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchh
Q 044710 78 IIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEV 157 (331)
Q Consensus 78 ~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 157 (331)
+|++++|.+.+..+ ..+..+++|+.|++..+..... ..+.....+++|++|++++|.+++..|..
T Consensus 130 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 130 YLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQEN--------------FLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp EEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGG--------------EECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred EEECCCCcCCccch-hhcccCcCCCEEECCCCccccc--------------cchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 99999999985544 4588899999999887642100 01111234789999999999999888999
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCC-CCCeEEcccCCCcccC
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLNLSYNRLWGRI 226 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~ls~N~lsg~i 226 (331)
+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999999999988788899999999999999999999999898884 9999999999998653
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.7e-26 Score=218.34 Aligned_cols=213 Identities=18% Similarity=0.140 Sum_probs=155.2
Q ss_pred hhCCCCCcEEeccCCcCccC--chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCC
Q 044710 20 LAKCMKLEVVNVGNNMISDS--FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPG 97 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 97 (331)
+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ +|..+ ..+++|++|++++|.+.+..|...+..
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF--MGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCC--TTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhc--cCCCCCCeeECCCCccCCccChhhhhc
Confidence 44555666666666666544 25566666777777777776654 33333 566777777777777765555445666
Q ss_pred ccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC-CchhhhCCCCCCEEEccCccccc
Q 044710 98 MEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTG 176 (331)
Q Consensus 98 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 176 (331)
+++|+.|+++.+... ...+.....+++|++|++++|.+++. +|..++.+++|++|++++|++++
T Consensus 423 l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 423 LEKLLYLDISYTNTK---------------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp CTTCCEEECTTSCCE---------------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccCCEEECcCCCCC---------------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 777777766654311 11122234478999999999999973 78889999999999999999999
Q ss_pred CCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCC-CCC-ccccccccCCcCCcCCCC
Q 044710 177 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN-QFN-TFENDSYIGNIHLCGEPL 251 (331)
Q Consensus 177 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~-~~~-~~~~~~~~~n~~lc~~~~ 251 (331)
..|..++.+++|++|+|++|++++.+|..+..+++|+.|++++|+++ .+|... .+. .+..+.+.+|++.|+++.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88999999999999999999999988999999999999999999999 566542 222 356667788888876653
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.8e-25 Score=214.27 Aligned_cols=113 Identities=19% Similarity=0.327 Sum_probs=94.0
Q ss_pred ccCCEEEcCCCcC-CCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 138 VMFRAMDFSSNRF-HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 138 ~~L~~L~ls~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
+.++.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..+..+++|++||
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 3455666666653 334677788899999999999999999999999999999999999999998898999999999999
Q ss_pred cccCCCcccCCCCCC-C-CccccccccCCcCCcCCC
Q 044710 217 LSYNRLWGRIPRGNQ-F-NTFENDSYIGNIHLCGEP 250 (331)
Q Consensus 217 ls~N~lsg~ip~~~~-~-~~~~~~~~~~n~~lc~~~ 250 (331)
+++|+|++..|...+ + ..+..+...+||+.|+|.
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999998887543 2 356677788999888764
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=209.36 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=88.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..|.+|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++. +|.. .+++|++|+
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~ 96 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH----PTVNLKHLD 96 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC----CCCCCSEEE
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc----ccCCccEEe
Confidence 47899999999998888999999999999999999998889999999999999999999984 5543 588999999
Q ss_pred ccCCCCCC-CCCccccCCcccccccccccc
Q 044710 81 LSHNEFTG-FLPTRIFPGMEAMKNVDEQRR 109 (331)
Q Consensus 81 ls~n~l~~-~~p~~~~~~l~~L~~l~l~~~ 109 (331)
+++|.+++ .+|.. ++.+++|+.|+++.+
T Consensus 97 L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 97 LSFNAFDALPICKE-FGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCSSCCSSCCCCGG-GGGCTTCCEEEEEES
T ss_pred ccCCccccccchhh-hccCCcceEEEecCc
Confidence 99999985 35544 778888888877654
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=220.08 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=167.6
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEec-cCCcCccC-----------------------------------------
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNV-GNNMISDS----------------------------------------- 39 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L-~~n~l~~~----------------------------------------- 39 (331)
++.|+|++|.+.|.+|.+|+++++|++|+| ++|.++|.
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 678999999999999999999999999999 77755433
Q ss_pred -----------------------------------chhhhcCCCCCCeEEeecccccc-----------------cCCCC
Q 044710 40 -----------------------------------FPCWLGSLPELKILELRSNRFYG-----------------PLCKS 67 (331)
Q Consensus 40 -----------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~ 67 (331)
+|..|+++++|++|+|++|++++ .+|..
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 78889999999999999999998 38887
Q ss_pred CCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcC-chhhHHHHh-------cc
Q 044710 68 NITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKG-HDFQLQKIL-------VM 139 (331)
Q Consensus 68 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~ 139 (331)
+.+..+++|++|++++|.+.+.+|.. +..+++|+.|+++.|... .+ ..+.....+ ++
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~l--------------sg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGI--------------SAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTS--------------CHHHHHHHHHHHHHCTTTTTT
T ss_pred hhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCc--------------ccccchHHHHhhhhcccccCC
Confidence 73348999999999999999999965 789999999998876310 00 011112223 37
Q ss_pred CCEEEcCCCcCCCCCch--hhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCC-CCeEE
Q 044710 140 FRAMDFSSNRFHGEIPE--VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA-LALLN 216 (331)
Q Consensus 140 L~~L~ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~ 216 (331)
|+.|++++|.++ .+|. .++.+++|+.|+|++|+++ .+| .|+.+++|+.|+|++|+++ .+|..+..+++ |+.|+
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 888888888888 7777 7888888888888888888 777 7888888888888888888 77777777877 88888
Q ss_pred cccCCCcccCCCC
Q 044710 217 LSYNRLWGRIPRG 229 (331)
Q Consensus 217 ls~N~lsg~ip~~ 229 (331)
+++|.++ .+|..
T Consensus 626 Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 626 FSHNKLK-YIPNI 637 (876)
T ss_dssp CCSSCCC-SCCSC
T ss_pred CcCCCCC-cCchh
Confidence 8888887 66654
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.6e-24 Score=185.15 Aligned_cols=182 Identities=21% Similarity=0.246 Sum_probs=133.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 115 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELV 115 (272)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEE
T ss_pred ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEE
Confidence 46788888888773 33 577888888888888888753 367788888888888888876555444 6678888888
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|...+.. +++|++|++++|.+++..+..++.
T Consensus 116 L~~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDK---------------------------------------LTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp CTTSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcCC-ccCHHHhcc---------------------------------------CCCCCEEECCCCccCccCHHHhcc
Confidence 8888887 444433433 456677777777777666666777
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
+++|+.|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+++..|.
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 77888888888887766666677777888888888888776666677777888888888877776663
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-25 Score=196.75 Aligned_cols=216 Identities=23% Similarity=0.223 Sum_probs=162.5
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|++++..|..|..+++|++|+|++|.+++..+ +..+++|++|++++|++++.. ..++|++|+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-------~~~~L~~L~ 105 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLH 105 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-------ECTTCCEEE
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-------CCCCcCEEE
Confidence 47899999999998888999999999999999999987665 889999999999999997632 247899999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh-h
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL-G 159 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l-~ 159 (331)
+++|.+++ ++. ..+++|+.|++..|... .........+++|++|++++|.+++..+..+ .
T Consensus 106 l~~n~l~~-~~~---~~~~~L~~L~l~~N~l~---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 106 AANNNISR-VSC---SRGQGKKNIYLANNKIT---------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp CCSSCCSE-EEE---CCCSSCEEEECCSSCCC---------------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCCCccCC-cCc---cccCCCCEEECCCCCCC---------------CccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 99999884 332 23566777777765311 1111122346788889999998887666666 4
Q ss_pred CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccccc
Q 044710 160 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFEND 238 (331)
Q Consensus 160 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~ 238 (331)
.+++|++|++++|.+++. +. ...+++|++|+|++|++++.. ..+..+++|++|++++|.+++ +|.. ..+..+..+
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L 242 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHF 242 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEE
T ss_pred ccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEE
Confidence 688899999999988855 32 335788999999999888544 457888889999999998885 4543 344566666
Q ss_pred cccCCcCCcC
Q 044710 239 SYIGNIHLCG 248 (331)
Q Consensus 239 ~~~~n~~lc~ 248 (331)
.+.+|+..|+
T Consensus 243 ~l~~N~~~~~ 252 (317)
T 3o53_A 243 DLRGNGFHCG 252 (317)
T ss_dssp ECTTCCCBHH
T ss_pred EccCCCccCc
Confidence 7777777654
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=194.02 Aligned_cols=203 Identities=24% Similarity=0.245 Sum_probs=102.4
Q ss_pred ccEEEccCCcCCCCCchhh--hCCCCCcEEeccCCcCccCch----hhhcCCCCCCeEEeecccccccCCCCCCCcCCCC
Q 044710 2 LRSLDLNNNKLEGPLPISL--AKCMKLEVVNVGNNMISDSFP----CWLGSLPELKILELRSNRFYGPLCKSNITFPFQA 75 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 75 (331)
|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..+..+ ..+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccCCC
Confidence 5666666666666666665 666666666666666665333 233456666666666666655444444 55666
Q ss_pred ccEEEccCCCCCCC--CC-ccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCC
Q 044710 76 LQIIDLSHNEFTGF--LP-TRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHG 152 (331)
Q Consensus 76 L~~L~ls~n~l~~~--~p-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 152 (331)
|++|++++|++.+. ++ ...+..+++|+.|+++.|.... ...........+++|++|++++|.+++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------------PTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------------HHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------------hHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 66666666665431 11 1223445555555544432100 000000012234455555555555554
Q ss_pred CCchhhhCC---CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 153 EIPEVLGNF---KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 153 ~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 444444443 35555555555555 3444332 4555555555555532 21 344455555555555554
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-25 Score=198.39 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=151.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 123 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLV 123 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEEE
Confidence 47899999999997666678999999999999999998888899999999999999999988766666 7899999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccCC-----ccccceeEEEEcCchhhHHHHh-----------------
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGG-----AFYNESITVVMKGHDFQLQKIL----------------- 137 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~----------------- 137 (331)
+++|.++ .+|..++..+++|+.|++..+.. .+.. ......+.+..+.........+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9999999 78888889999999999987642 1111 1111122211111100000111
Q ss_pred -----------------------ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCC
Q 044710 138 -----------------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 194 (331)
Q Consensus 138 -----------------------~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 194 (331)
++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..|..+++|++|+|+
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 1344445555555432 345666666777777776666666666666677777777
Q ss_pred CCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 195 FNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 195 ~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+|++++ +|..+..+++|++|++++|.++
T Consensus 281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp SSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred CCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 776664 3444455666777777777666
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.5e-26 Score=199.06 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=156.5
Q ss_pred CccEEEccCCcCCCCCchhh--hCCCCCcEEeccCCcCccCchhhhcCC-----CCCCeEEeecccccccCCCCCCCcCC
Q 044710 1 NLRSLDLNNNKLEGPLPISL--AKCMKLEVVNVGNNMISDSFPCWLGSL-----PELKILELRSNRFYGPLCKSNITFPF 73 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l 73 (331)
+|++|+|++|++++.+|..+ ..+++|++|+|++|.+++. |..+..+ ++|++|++++|++.+..+..+ ..+
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l 172 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVF 172 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccC
Confidence 47889999999988888876 8889999999999999877 7777766 889999999999987666666 778
Q ss_pred CCccEEEccCCCCCCCC--C-ccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcC
Q 044710 74 QALQIIDLSHNEFTGFL--P-TRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRF 150 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~--p-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 150 (331)
++|++|++++|.+.+.+ | ...+..+++|+.|+++.|..... ..........+++|+.|++++|.+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP------------SGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH------------HHHHHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch------------HHHHHHHHhcCCCCCEEECCCCcC
Confidence 89999999999877542 2 22347888888888877531100 001112223457889999999999
Q ss_pred CCCCc-hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 151 HGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 151 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
++..| ..+..+++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 87765 45666889999999999998 7777665 7899999999999866 55 7888899999999998875
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=201.20 Aligned_cols=226 Identities=17% Similarity=0.194 Sum_probs=163.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++..|.+|.++++|++|++++|.+++..+..|.++++|++|++++|++.+ ++....+..+++|++|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILR 155 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEE
Confidence 58999999999998888999999999999999999998777779999999999999999985 44412237899999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-cc-CCcc----ccceeEEEEcCc---hhhHHHHhccCCEEEcCCCcCC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YM-GGAF----YNESITVVMKGH---DFQLQKILVMFRAMDFSSNRFH 151 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~-~~~~----~~~~~~~~~~~~---~~~~~~~~~~L~~L~ls~n~l~ 151 (331)
+++|+..+.++...+..+++|+.|++..+.. .. ...+ ....+.+..+.. ...+...+++|+.|++++|.++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9999533366666689999999999887641 11 1111 111222222211 1122233566666677766666
Q ss_pred CCCchhhh---CCCCCCEEEccCccccc----CCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 152 GEIPEVLG---NFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 152 ~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+..+..+. ....++.++++++.+++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++++
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 54433322 34456666666666654 356778899999999999999995444446899999999999999998
Q ss_pred cCC
Q 044710 225 RIP 227 (331)
Q Consensus 225 ~ip 227 (331)
..|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 766
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.6e-25 Score=208.41 Aligned_cols=236 Identities=19% Similarity=0.190 Sum_probs=173.5
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+ ..+++|++|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 129 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLV 129 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCEEE
Confidence 46889999999997777788999999999999999998888899999999999999999998766665 7899999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccC-----CccccceeEEEEcCchhhHHHHh-----------------
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMG-----GAFYNESITVVMKGHDFQLQKIL----------------- 137 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~----------------- 137 (331)
+++|.++ .+|..+|..+++|+.|+++.|.. .+. .......+.+..+.........+
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 9999999 78888889999999999987642 111 11111111111111000000111
Q ss_pred -----------------------ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCC
Q 044710 138 -----------------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 194 (331)
Q Consensus 138 -----------------------~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 194 (331)
++|+.|++++|.+++ +..+..+++|+.|+|++|.+++.+|..|+.+++|+.|+|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 235556666666654 3567788888889999888888888888888889999999
Q ss_pred CCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccccccccCC
Q 044710 195 FNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDSYIGN 243 (331)
Q Consensus 195 ~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~~~~n 243 (331)
+|.+++ +|..+..+++|+.|++++|.++ .+|.. ..+..+..+.+.+|
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 998885 4666677888999999999888 34432 22333444444444
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=215.19 Aligned_cols=225 Identities=20% Similarity=0.206 Sum_probs=132.8
Q ss_pred ccEEEccCCcCCCCC-chhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPL-PISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++..+....+..+++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 555666666433333 5667777777777777777777777777777788888888877776555553346778888888
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc-c-CCcc------ccc----------------------------eeEE
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-M-GGAF------YNE----------------------------SITV 124 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~-~~~~------~~~----------------------------~~~~ 124 (331)
+++|.+++..+...++.+++|+.|++..|... . ...+ ... ...+
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 88888876555555777777777776654210 0 0000 000 0000
Q ss_pred EEcCc--h---------------------------------------hhHHHH--hccCCEEEcCCCcCCCCCchhhhCC
Q 044710 125 VMKGH--D---------------------------------------FQLQKI--LVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 125 ~~~~~--~---------------------------------------~~~~~~--~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
.+... . ...+.. .++|+.|++++|.+.+..|..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 11000 0 000000 1456666666666665555666666
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccC
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 226 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~i 226 (331)
++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 66666666666666655666666666666666666666555556666666666666666665433
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.1e-24 Score=206.21 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=87.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.|++..|.+|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++. +|.. .+++|++|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~ 127 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC----PMASLRHLD 127 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC----CCTTCSEEE
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc----ccccCCEEE
Confidence 47899999999998888899999999999999999998889999999999999999999974 5543 588999999
Q ss_pred ccCCCCCCCCC-ccccCCccccccccccccc
Q 044710 81 LSHNEFTGFLP-TRIFPGMEAMKNVDEQRRL 110 (331)
Q Consensus 81 ls~n~l~~~~p-~~~~~~l~~L~~l~l~~~~ 110 (331)
+++|.+++ +| ...+..+++|+.|+++.+.
T Consensus 128 Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 128 LSFNDFDV-LPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCSSCCSB-CCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCCccc-cCchHhhcccCcccEEecCCCc
Confidence 99999984 33 2347788888888876653
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.5e-24 Score=207.17 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=173.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|.|++..|.+|.++++|++|+|++|.+++..|..|.++++|++|+|++|++.+..|..+ ..+++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL--SGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT--SSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh--cccccccEee
Confidence 47899999999998889999999999999999999998889999999999999999999988777776 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc-c--CCcc---ccceeEEEEc---CchhhHHHHhccCC--EEEcCCCc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-M--GGAF---YNESITVVMK---GHDFQLQKILVMFR--AMDFSSNR 149 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~--~~~~---~~~~~~~~~~---~~~~~~~~~~~~L~--~L~ls~n~ 149 (331)
+++|.+++ ++...+..+++|++|+++.|... + .... ....+.+..+ ......+..+.+|+ .|++++|.
T Consensus 112 L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 99999994 43344889999999998876421 1 1111 1111111111 11123334456666 67777777
Q ss_pred CCCCCchhhhCC---------------------------------------------------CCCCEEEccCcccccCC
Q 044710 150 FHGEIPEVLGNF---------------------------------------------------KSLKVLNLSHNSLTGNI 178 (331)
Q Consensus 150 l~~~~p~~l~~l---------------------------------------------------~~L~~L~Ls~N~l~~~~ 178 (331)
+++..|..+... .+|+.|++++|.+++..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 765555443221 04566777777777666
Q ss_pred cccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccccccccCCc
Q 044710 179 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDSYIGNI 244 (331)
Q Consensus 179 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~~~~n~ 244 (331)
+..|+.+++|++|++++|+++ .+|..+..+++|++|++++|.+++..|.. ..+..+..+.+.+|.
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 666888888888888888887 67777888888888888888888665532 234445555555553
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-24 Score=186.06 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=150.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 130 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELN 130 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEE
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEE
Confidence 58999999999998888899999999999999999998888899999999999999999987655555 7899999999
Q ss_pred ccCCCCCCC-CCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCC----EEEcCCCcCCCCCc
Q 044710 81 LSHNEFTGF-LPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFR----AMDFSSNRFHGEIP 155 (331)
Q Consensus 81 ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~ls~n~l~~~~p 155 (331)
+++|.+++. +|.. +..+++|+.|+++.|... .........+..|+ .|++++|.+++..+
T Consensus 131 l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 131 VAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ---------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp CCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCC---------------EECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred CcCCccceecCchh-hccCCCCCEEECCCCCCC---------------cCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 999999853 4544 788999999998876311 11112223355565 89999999995555
Q ss_pred hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCC
Q 044710 156 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 202 (331)
Q Consensus 156 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 202 (331)
..+ ...+|+.|++++|++++..+..|..+++|+.|+|++|.++...
T Consensus 195 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 195 GAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 444 4558999999999999777777899999999999999998654
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1e-24 Score=184.03 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=139.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCc-CccCchhhhcCCCCCCeEEeec-ccccccCCCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM-ISDSFPCWLGSLPELKILELRS-NRFYGPLCKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~ 78 (331)
+|++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..+ ..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCE
Confidence 36677777777776666677777777777777775 6655555677777777777776 77765444443 56677777
Q ss_pred EEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCC-cCCCCCchh
Q 044710 79 IDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSN-RFHGEIPEV 157 (331)
Q Consensus 79 L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~p~~ 157 (331)
|++++|.+++ +|. +..+++| ..|+.|++++| .+++..+..
T Consensus 110 L~l~~n~l~~-lp~--~~~l~~L------------------------------------~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD--LTKVYST------------------------------------DIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp EEEEEECCCS-CCC--CTTCCBC------------------------------------CSEEEEEEESCTTCCEECTTT
T ss_pred EeCCCCCCcc-ccc--ccccccc------------------------------------ccccEEECCCCcchhhcCccc
Confidence 7777777763 553 3332222 11338999999 888666677
Q ss_pred hhCCCCCC-EEEccCcccccCCcccccCCCCCcEEeCCCCc-CCCCCcccccCC-CCCCeEEcccCCCcccCCCCCCCCc
Q 044710 158 LGNFKSLK-VLNLSHNSLTGNIPVSFENMTALESLDLSFNK-LDGRIPEQLLSV-TALALLNLSYNRLWGRIPRGNQFNT 234 (331)
Q Consensus 158 l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~ls~N~lsg~ip~~~~~~~ 234 (331)
|..+++|+ +|++++|+++...+..|.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|.++ .+|.. .+..
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~ 227 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEH 227 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTT
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-Hhcc
Confidence 89999999 9999999999443444544 899999999995 987777788888 99999999999998 45544 4555
Q ss_pred cccccccC
Q 044710 235 FENDSYIG 242 (331)
Q Consensus 235 ~~~~~~~~ 242 (331)
+..+...+
T Consensus 228 L~~L~l~~ 235 (239)
T 2xwt_C 228 LKELIARN 235 (239)
T ss_dssp CSEEECTT
T ss_pred CceeeccC
Confidence 55554443
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8e-24 Score=187.17 Aligned_cols=231 Identities=20% Similarity=0.228 Sum_probs=174.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..|..+ ..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCEEE
Confidence 3688999999998 5676654 589999999999998888889999999999999999998777776 7899999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-cc-----CCccccceeEEEEcC-----chhhHHHHhccCCEEEcCCCc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YM-----GGAFYNESITVVMKG-----HDFQLQKILVMFRAMDFSSNR 149 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~ls~n~ 149 (331)
+++|.++ .+|..++ ++|+.|++..+.. .. ........+.+..+. ........+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999999 7887655 6778888776531 11 111112222222111 122334557788888888888
Q ss_pred CCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 150 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 150 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..
T Consensus 183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 87 4665443 78888999999888887888999999999999999998877778888999999999999998 56653
Q ss_pred -CCCCccccccccCCc
Q 044710 230 -NQFNTFENDSYIGNI 244 (331)
Q Consensus 230 -~~~~~~~~~~~~~n~ 244 (331)
..+..+..+.+.+|.
T Consensus 259 l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 259 LADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTTCSSCCEEECCSSC
T ss_pred hccCCCcCEEECCCCc
Confidence 234445555555553
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.1e-24 Score=185.68 Aligned_cols=178 Identities=24% Similarity=0.277 Sum_probs=156.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+ ..+++|++|+
T Consensus 64 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 139 (272)
T 3rfs_A 64 NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLN 139 (272)
T ss_dssp TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEE
Confidence 58999999999996 3 489999999999999999998888889999999999999999987666555 7799999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|...+.. +++|+.|++++|.+++..+..++.
T Consensus 140 L~~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 140 LAHNQLQ-SLPKGVFDK---------------------------------------LTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCSSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCccC-ccCHHHhcc---------------------------------------CccCCEEECCCCCcCccCHHHhcC
Confidence 9999998 455443332 567789999999999877778899
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
+++|+.|++++|++++..|..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 99999999999999988888899999999999999988754 557899999999999999975
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=6e-24 Score=205.67 Aligned_cols=224 Identities=21% Similarity=0.227 Sum_probs=130.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|++++..+..+ ..+++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh--ccCCCCCEEE
Confidence 36777777777776666677777777777777777777777777777777777777777765333334 5677777777
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-cc-CC----ccccceeEEEEc---CchhhHHH--HhccCCEEEcCCCc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YM-GG----AFYNESITVVMK---GHDFQLQK--ILVMFRAMDFSSNR 149 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~-~~----~~~~~~~~~~~~---~~~~~~~~--~~~~L~~L~ls~n~ 149 (331)
+++|.++ .+|...+..+++|++|++..+.. .. .. ......+.+..+ ........ .+++|+.|++++|.
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 7777776 44444466777777777665531 11 01 011111111111 11111111 13566666666666
Q ss_pred CCCCCchhhhCC---------------------------CCCCEEEccCcccccCCcccccCCCC--CcEEeCCCCcCCC
Q 044710 150 FHGEIPEVLGNF---------------------------KSLKVLNLSHNSLTGNIPVSFENMTA--LESLDLSFNKLDG 200 (331)
Q Consensus 150 l~~~~p~~l~~l---------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~ 200 (331)
+++..|..+..+ ++|+.|++++|.+++..|..|..++. |++|+|++|++++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 665555544432 34555555555555555555555433 6666666666665
Q ss_pred CCcccccCCCCCCeEEcccCCCcccCC
Q 044710 201 RIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 201 ~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
..|..+..+++|++|++++|.+++..|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred cCcccccCcccccEeeCCCCccCccCh
Confidence 555556666666666666666655544
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.3e-24 Score=198.43 Aligned_cols=112 Identities=28% Similarity=0.343 Sum_probs=86.3
Q ss_pred HHHhccCCEEEcCCCcCCCCCchh-hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCC
Q 044710 134 QKILVMFRAMDFSSNRFHGEIPEV-LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 212 (331)
Q Consensus 134 ~~~~~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 212 (331)
...+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence 344778888888888888756654 77788888888888888877776654 68999999999998 677777789999
Q ss_pred CeEEcccCCCcccCCCC--CCCCccccccccCCcCCcCC
Q 044710 213 ALLNLSYNRLWGRIPRG--NQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 213 ~~L~ls~N~lsg~ip~~--~~~~~~~~~~~~~n~~lc~~ 249 (331)
++|++++|+++ .+|.. ..+..+..+.+.+|+..|.+
T Consensus 447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 99999999998 56653 23445666667778777654
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.8e-24 Score=210.76 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=148.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCC-CCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPE-LKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
+|+.|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |++|+|++|++. .+|..+.....++|++|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 4788888888888 777 8888888888888888888 67777888887 888888888887 56665522233447888
Q ss_pred EccCCCCCCCCCccc--cC--Cccccccccccccccc-cCCcc-----ccceeEEEEc---CchhhHH-------HHhcc
Q 044710 80 DLSHNEFTGFLPTRI--FP--GMEAMKNVDEQRRLEY-MGGAF-----YNESITVVMK---GHDFQLQ-------KILVM 139 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~--~~--~l~~L~~l~l~~~~~~-~~~~~-----~~~~~~~~~~---~~~~~~~-------~~~~~ 139 (331)
++++|.+.+.+|.-. .. .+.+|+.|+++.|... +.... ....+.+..+ ..+.... ..+++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 888887776554311 11 2335666666654311 11000 0111111100 0111111 11336
Q ss_pred CCEEEcCCCcCCCCCchhhh--CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCC------CcCCCCCcccccCCCC
Q 044710 140 FRAMDFSSNRFHGEIPEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF------NKLDGRIPEQLLSVTA 211 (331)
Q Consensus 140 L~~L~ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~ 211 (331)
|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 777777777777 6676665 77777777777777775 676777777777777755 6667777777777777
Q ss_pred CCeEEcccCCCcccCCCCCCCCccccccccCCc
Q 044710 212 LALLNLSYNRLWGRIPRGNQFNTFENDSYIGNI 244 (331)
Q Consensus 212 L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~ 244 (331)
|+.|++++|.+ +.+|.... ..+..+.+.+|+
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp CCEEECCSSCC-CBCCSCCC-SSSCEEECCSCT
T ss_pred CCEEECCCCCC-CccCHhhc-CCCCEEECCCCC
Confidence 77777777777 56776522 344445555554
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.6e-24 Score=207.06 Aligned_cols=209 Identities=19% Similarity=0.172 Sum_probs=178.5
Q ss_pred CccEEEccCCcCCCC--CchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCC-CCCCCcCCCCcc
Q 044710 1 NLRSLDLNNNKLEGP--LPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLC-KSNITFPFQALQ 77 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~ 77 (331)
+|++|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..+ ..+ ..+++|+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~ 427 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLL 427 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCC
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCC
Confidence 478999999999866 48899999999999999999985 56789999999999999999988766 344 7899999
Q ss_pred EEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchh
Q 044710 78 IIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEV 157 (331)
Q Consensus 78 ~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 157 (331)
+|++++|.+.+..|.. +..+++|+.|++..+...-. ..+.....+++|++|++++|.+++..|..
T Consensus 428 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN--------------TLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp EEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGG--------------EECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred EEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCc--------------chHHhhccCCCCCEEECCCCcCCccChhh
Confidence 9999999999666654 88999999999887642100 01112234789999999999999888999
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCC-CCCeEEcccCCCcccCCC
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~ls~N~lsg~ip~ 228 (331)
++.+++|++|++++|++++.+|..++.+++|++|+|++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999988999999999999999999999 5677788887 699999999999976653
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.4e-23 Score=182.06 Aligned_cols=178 Identities=25% Similarity=0.277 Sum_probs=154.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+ ...+++|++|++++|++. .+|..+ ..+++|++|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~ 106 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLD 106 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEE
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEE
Confidence 47899999999998888999999999999999999986544 378999999999999997 466655 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|+++ .+|...|.. +++|++|++++|.+++..+..|..
T Consensus 107 l~~N~l~-~l~~~~~~~---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 107 VSFNRLT-SLPLGALRG---------------------------------------LGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp CCSSCCC-CCCSSTTTT---------------------------------------CTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCcCc-ccCHHHHcC---------------------------------------CCCCCEEECCCCCCCccChhhccc
Confidence 9999999 555443433 567789999999999777778899
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..++.|+.+++++|++..
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999999999999999776677889999999999999999 677778888899999999999974
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=7.8e-24 Score=199.86 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=66.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeeccccccc-CCCCCCCcCCCCccEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGP-LCKSNITFPFQALQII 79 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L 79 (331)
+|++|+|++|++++..|.+|.++++|++|++++|.+++..|..|+++++|++|++++|++++. .|..+ ..+++|++|
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L 128 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTL 128 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh--hccCCccEE
Confidence 356666666666666666666666677777777766666666666677777777777766542 23333 556666666
Q ss_pred EccCCCCCCCCCccccCCccccccccccc
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQR 108 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 108 (331)
++++|.+.+.+|...+..+++|+.|++..
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccC
Confidence 66666644455544466666666666554
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.8e-24 Score=188.78 Aligned_cols=229 Identities=20% Similarity=0.188 Sum_probs=171.9
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+ ..+++|++|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLYI 109 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEEC
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEEC
Confidence 688999999998 6776664 689999999999998888899999999999999999988767666 78999999999
Q ss_pred cCCCCCCCCCccccCCcccccccccccccc-ccCC-----ccccceeEEEEcCc-----hhhHHHHhccCCEEEcCCCcC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGG-----AFYNESITVVMKGH-----DFQLQKILVMFRAMDFSSNRF 150 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~ls~n~l 150 (331)
++|.++ .+|..++ ++|+.|++..+.. .+.. ......+.+..+.. .......+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999999 7887655 6788888877642 1111 11111222111111 11111112 677777777777
Q ss_pred CCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-
Q 044710 151 HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG- 229 (331)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~- 229 (331)
+ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..
T Consensus 185 ~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 T-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp S-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred C-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 7 3555443 68899999999999888888999999999999999999888888999999999999999998 66754
Q ss_pred CCCCccccccccCCc
Q 044710 230 NQFNTFENDSYIGNI 244 (331)
Q Consensus 230 ~~~~~~~~~~~~~n~ 244 (331)
..+..+..+.+.+|.
T Consensus 261 ~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred hcCccCCEEECCCCC
Confidence 234445555566664
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.7e-23 Score=198.19 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=40.6
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccC-chhhhcCCCCCCeEEeecccccc
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDS-FPCWLGSLPELKILELRSNRFYG 62 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 62 (331)
+|++|+|++|+|+ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|++.+
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 4677777777777 45544 677777777777777653 35677777777777777777653
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=199.81 Aligned_cols=226 Identities=24% Similarity=0.303 Sum_probs=159.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccC--CCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPL--CKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~ 78 (331)
+|++|++++|.++ .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. +..+ ..+++|++
T Consensus 305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~ 377 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD--FGTTSLKY 377 (570)
T ss_dssp CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH--HTCSCCCE
T ss_pred CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc--cccCccCE
Confidence 4788899999888 5554 4677888888888887765554 66788888888888876542 2223 56778888
Q ss_pred EEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh
Q 044710 79 IDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL 158 (331)
Q Consensus 79 L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 158 (331)
|++++|.+. .+|.. +..+++|+.|++..+..... ........+++|++|++++|.+.+..|..+
T Consensus 378 L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 378 LDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQM--------------SEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESC--------------TTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred EECCCCccc-ccccc-ccccCCCCEEEccCCccccc--------------cchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 888888877 44444 67777888777766431100 000112336778888888888887778888
Q ss_pred hCCCCCCEEEccCcccc-cCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccc
Q 044710 159 GNFKSLKVLNLSHNSLT-GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFE 236 (331)
Q Consensus 159 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~ 236 (331)
..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|.. ..+..+.
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 88888888888888886 567778888888888888888888777778888888888888888888765543 2344555
Q ss_pred cccccCCcCCcCC
Q 044710 237 NDSYIGNIHLCGE 249 (331)
Q Consensus 237 ~~~~~~n~~lc~~ 249 (331)
.+.+.+|+..|.+
T Consensus 522 ~L~l~~N~~~~~~ 534 (570)
T 2z63_A 522 KIWLHTNPWDCSC 534 (570)
T ss_dssp EEECCSSCBCCCT
T ss_pred EEEecCCcccCCC
Confidence 5666666665543
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.5e-23 Score=173.27 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=141.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+ ..+++|++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEEE
Confidence 47899999999999888899999999999999999999888889999999999999999987655555 7799999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|...+.. +++|++|++++|.+++..+..++.
T Consensus 114 L~~N~l~-~~~~~~~~~---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 114 LGGNQLK-SLPSGVFDR---------------------------------------LTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp CCSSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCcCC-CcChhHhcc---------------------------------------CCcccEEECcCCcCCccCHHHcCc
Confidence 9999999 555443333 567789999999999777778999
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 201 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 201 (331)
+++|++|+|++|++++..+..+..+++|+.|+|++|.++..
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999999988888899999999999999999876
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=9.8e-23 Score=178.39 Aligned_cols=190 Identities=16% Similarity=0.236 Sum_probs=157.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+. + .+ ..+++|++|+
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~--~~l~~L~~L~ 113 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AI--AGLQSIKTLD 113 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GG--TTCTTCCEEE
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hh--cCCCCCCEEE
Confidence 48899999999984 55 68999999999999999986555 89999999999999999763 2 33 7799999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ ++. +..+++|+.|++..+.... ... ...+++|+.|++++|.+++ ++. +..
T Consensus 114 l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~---------------~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~ 171 (308)
T 1h6u_A 114 LTSTQITD-VTP--LAGLSNLQVLYLDLNQITN---------------ISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN 171 (308)
T ss_dssp CTTSCCCC-CGG--GTTCTTCCEEECCSSCCCC---------------CGG--GGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred CCCCCCCC-chh--hcCCCCCCEEECCCCccCc---------------Ccc--ccCCCCccEEEccCCcCCC-Chh-hcC
Confidence 99999984 553 7889999999887763110 011 2447899999999999985 444 889
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|.+++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9999999999999986543 788999999999999998655 37889999999999999985
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=196.35 Aligned_cols=209 Identities=19% Similarity=0.226 Sum_probs=179.0
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCc--hhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSF--PCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 78 (331)
+|++|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|.+.+..+. + ..+++|++
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~l~~L~~ 400 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F--LGLEQLEH 400 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E--ETCTTCCE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c--cccCCCCE
Confidence 478999999999876665 78899999999999998664 77889999999999999999864433 4 77899999
Q ss_pred EEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCC-CCCchh
Q 044710 79 IDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFH-GEIPEV 157 (331)
Q Consensus 79 L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~p~~ 157 (331)
|++++|.+.+..|...+..+++|+.|+++.+.... ........+++|++|++++|.++ +.+|..
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE---------------CCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccc---------------cchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 99999999877676678899999999988763111 11122234789999999999998 578999
Q ss_pred hhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 158 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999988999999999999999999999988888999999999999999999988864
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.7e-22 Score=178.52 Aligned_cols=228 Identities=19% Similarity=0.228 Sum_probs=144.5
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ + ..+++|++|+
T Consensus 111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~--~~l~~L~~L~ 183 (347)
T 4fmz_A 111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--I--ANLTDLYSLS 183 (347)
T ss_dssp TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--G--GGCTTCSEEE
T ss_pred cCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--h--ccCCCCCEEE
Confidence 58899999999985 443 8899999999999997665554 48889999999999998875433 2 6788999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCC----ccccceeEEEEcCc-hhhHHHHhccCCEEEcCCCcCCCCCc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGG----AFYNESITVVMKGH-DFQLQKILVMFRAMDFSSNRFHGEIP 155 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~p 155 (331)
+++|.+.+ ++. +..+++|+.+++..+...... ......+.+..... .......+++|++|++++|.+++ +
T Consensus 184 l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~- 258 (347)
T 4fmz_A 184 LNYNQIED-ISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I- 258 (347)
T ss_dssp CTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-
T ss_pred ccCCcccc-ccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-
Confidence 99998884 443 667777777777664311100 00111111111100 00012335666667777666663 2
Q ss_pred hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCcc
Q 044710 156 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTF 235 (331)
Q Consensus 156 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~ 235 (331)
..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..| ...+..+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 3466666777777777766643 346666677777777777766666666667777777777777765544 3334444
Q ss_pred ccccccCC
Q 044710 236 ENDSYIGN 243 (331)
Q Consensus 236 ~~~~~~~n 243 (331)
..+.+.+|
T Consensus 336 ~~L~l~~N 343 (347)
T 4fmz_A 336 DSADFANQ 343 (347)
T ss_dssp SEESSSCC
T ss_pred ceeehhhh
Confidence 44444444
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=7.9e-23 Score=179.21 Aligned_cols=226 Identities=19% Similarity=0.241 Sum_probs=168.9
Q ss_pred ccEEEccCCcCCCCCch---hhhCCCCCcEEeccCCcCccCchhhh--cCCCCCCeEEeecccccccCCCC--CCCcCCC
Q 044710 2 LRSLDLNNNKLEGPLPI---SLAKCMKLEVVNVGNNMISDSFPCWL--GSLPELKILELRSNRFYGPLCKS--NITFPFQ 74 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~ 74 (331)
++.|.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|++.+..+.. ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 46677777777632111 12335679999999999999999888 89999999999999998754411 1124688
Q ss_pred CccEEEccCCCCCCCCCccccCCcccccccccccccccc-CCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC
Q 044710 75 ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYM-GGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE 153 (331)
Q Consensus 75 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 153 (331)
+|++|++++|.+. .++...+..+++|+.|+++.|.... .+.. .......+++|++|++++|.++ .
T Consensus 146 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------~~~~~~~l~~L~~L~Ls~N~l~-~ 211 (310)
T 4glp_A 146 GLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLM------------AALCPHKFPAIQNLALRNTGME-T 211 (310)
T ss_dssp CCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHH------------TTSCTTSSCCCCSCBCCSSCCC-C
T ss_pred CCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhh------------HHHhhhcCCCCCEEECCCCCCC-c
Confidence 9999999999998 4555558899999999998874110 0000 0000123678999999999997 4
Q ss_pred Cch----hhhCCCCCCEEEccCcccccCCcccccCC---CCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccC
Q 044710 154 IPE----VLGNFKSLKVLNLSHNSLTGNIPVSFENM---TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 226 (331)
Q Consensus 154 ~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~i 226 (331)
++. .++.+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++.
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence 444 35788999999999999998888777776 69999999999999 6677664 7999999999999963
Q ss_pred CCCCCCCccccccccCCcC
Q 044710 227 PRGNQFNTFENDSYIGNIH 245 (331)
Q Consensus 227 p~~~~~~~~~~~~~~~n~~ 245 (331)
|....+..+..+.+.+|+.
T Consensus 288 ~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCTTSCCCCSCEECSSTTT
T ss_pred chhhhCCCccEEECcCCCC
Confidence 4444556666666777753
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.3e-22 Score=165.91 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=146.6
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..+ ..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECC
Confidence 46788888888 456554 3589999999999998878788999999999999999986544444 678999999999
Q ss_pred CCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK 162 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~ 162 (331)
+|.++ .+|...+.. +++|++|++++|.+++..+..+..++
T Consensus 85 ~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 85 TNQLQ-SLPNGVFDK---------------------------------------LTQLKELALNTNQLQSLPDGVFDKLT 124 (208)
T ss_dssp SSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcCC-ccCHhHhcC---------------------------------------ccCCCEEEcCCCcCcccCHhHhccCC
Confidence 99998 555443332 56778999999999977777789999
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
+|++|++++|++++..+..+..+++|++|++++|.+.+ .++.|++|+++.|.++|.+|..
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 99999999999997777778999999999999998764 3567899999999999999974
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-23 Score=195.47 Aligned_cols=196 Identities=21% Similarity=0.168 Sum_probs=159.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|++++|.+++..+. .+++|++|+
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~ 126 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS-----RGQGKKNIY 126 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC-----CCSSCEEEE
T ss_pred CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc-----ccCCCCEEE
Confidence 58999999999997666 9999999999999999986443 38999999999999875543 357899999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++..|.. +..+++|+.|+++.|..... .+..+...+++|+.|+|++|.+++. |. ...
T Consensus 127 L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~--------------~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 189 (487)
T 3oja_A 127 LANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV--------------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (487)
T ss_dssp CCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE--------------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc--------------ChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence 9999999655544 78899999999887631100 0112223478999999999999965 33 346
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc-ccCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW-GRIP 227 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls-g~ip 227 (331)
+++|+.|+|++|.+++.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +.+|
T Consensus 190 l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 899999999999999654 458999999999999999995 6777889999999999999998 4444
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.3e-23 Score=196.65 Aligned_cols=207 Identities=15% Similarity=0.138 Sum_probs=133.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|++++..|.+|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+ ..+++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF--GPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH--TTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh--ccCCCCcEEE
Confidence 36777777777777667777777777777777777777666777777777777777777776544434 5677777777
Q ss_pred ccCCCCCCC-CCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhh
Q 044710 81 LSHNEFTGF-LPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLG 159 (331)
Q Consensus 81 ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~ 159 (331)
+++|.+++. .| ..+..+++|+.|++..+... ..........+++|++|++++|.+++..|..++
T Consensus 105 Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 105 LMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETF--------------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSC--------------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CCCCcccccchh-hhhhccCCccEEECCCCccc--------------cccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 777777642 23 23666777777766554200 000011122356677777777777766777777
Q ss_pred CCCCCCEEEccCcccccCCccc-ccCCCCCcEEeCCCCcCCCCC---cccccCCCCCCeEEcccCCCccc
Q 044710 160 NFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRI---PEQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 160 ~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
.+++|++|++++|.+. .+|.. +..+++|++|++++|++++.. ......+++|+.|++++|.+++.
T Consensus 170 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 170 SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 7777777777777765 33333 345677777777777776532 11233456677777777777654
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.9e-22 Score=182.89 Aligned_cols=210 Identities=23% Similarity=0.315 Sum_probs=145.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++. + .+..+++|++|++++|.+++..| ++.+++|++|++++|++.+. ..+ ..+++|++|+
T Consensus 178 ~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~ 249 (466)
T 1o6v_A 178 TLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL--ASLTNLTDLD 249 (466)
T ss_dssp TCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG--GGCTTCSEEE
T ss_pred CCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhh--hcCCCCCEEE
Confidence 367777777777642 2 46777777777777777776554 56677777777777777642 122 5577777777
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++..| +..+++|+.|++..+... .... ...+++|+.|++++|.+++..+ ++.
T Consensus 250 l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~---------------~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 250 LANNQISNLAP---LSGLTKLTELKLGANQIS---------------NISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp CCSSCCCCCGG---GTTCTTCSEEECCSSCCC---------------CCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred CCCCccccchh---hhcCCCCCEEECCCCccC---------------cccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 77777774433 666777777776654311 0011 2346788888888888885443 778
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSY 240 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~ 240 (331)
+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|.+++..| ...+..+..+..
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 382 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 382 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence 8888888888888887655 67888888888888888865 467788888888888888887777 445555555566
Q ss_pred cCCcC
Q 044710 241 IGNIH 245 (331)
Q Consensus 241 ~~n~~ 245 (331)
.+|+.
T Consensus 383 ~~n~~ 387 (466)
T 1o6v_A 383 NDQAW 387 (466)
T ss_dssp CCEEE
T ss_pred cCCcc
Confidence 66644
No 72
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.1e-21 Score=174.55 Aligned_cols=209 Identities=21% Similarity=0.240 Sum_probs=131.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ + ..+++|++|+
T Consensus 133 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~ 205 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L--ASLTSLHYFT 205 (347)
T ss_dssp TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--G--GGCTTCCEEE
T ss_pred ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--c--cCCCccceee
Confidence 35677777775443333 36666667777777666664433 5566666666666666654221 1 3445555555
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc-cC---CccccceeEEEEcC-chhhHHHHhccCCEEEcCCCcCCCCCc
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MG---GAFYNESITVVMKG-HDFQLQKILVMFRAMDFSSNRFHGEIP 155 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~---~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~p 155 (331)
+++|.+.+..+ +..+++|+.|++..+... .. .......+.+..+. ........+++|+.|++++|.+++ +
T Consensus 206 l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~- 280 (347)
T 4fmz_A 206 AYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-I- 280 (347)
T ss_dssp CCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-
T ss_pred cccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC-C-
Confidence 55555542221 344444444444433210 00 00001111111000 011223457899999999999995 4
Q ss_pred hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 156 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 156 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 458899999999999999999999999999999999999999997666 888999999999999986
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.5e-21 Score=177.39 Aligned_cols=204 Identities=21% Similarity=0.171 Sum_probs=153.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|++++. + + ..+++|++|+
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~--~~l~~L~~L~ 112 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V--TPLTKLTYLN 112 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C--TTCTTCCEEE
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c--CCCCcCCEEE
Confidence 478999999999964 5 789999999999999999875 3 78899999999999999874 2 3 6788999999
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccC--CccccceeEEEEcC-chhhHHHHhccCCEEEcCCCcCCCCCch
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMG--GAFYNESITVVMKG-HDFQLQKILVMFRAMDFSSNRFHGEIPE 156 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~p~ 156 (331)
+++|.+++ +| +..+++|+.|++..+.. .+. .......+.+..+. ........+++|+.|++++|.+++ +|
T Consensus 113 L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 113 CDTNKLTK-LD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC-
T ss_pred CCCCcCCe-ec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec-
Confidence 99999985 55 67888888888877542 111 11111111111110 000012346789999999999985 55
Q ss_pred hhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 157 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 157 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
++.+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++..+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 78889999999999999864 37889999999999999997 55 7888999999999999997543
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.8e-23 Score=183.91 Aligned_cols=212 Identities=17% Similarity=0.124 Sum_probs=166.0
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
++.++++.+.+...++..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+ + ..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEEC
Confidence 3455666666665555666777899999999999999888999999999999999999987554 3 77999999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.+++ ++ ..++|+.|++..+.... ... ..+++|++|++++|.+++..+..+..+
T Consensus 88 s~n~l~~-l~-----~~~~L~~L~l~~n~l~~----------~~~--------~~~~~L~~L~l~~N~l~~~~~~~~~~l 143 (317)
T 3o53_A 88 NNNYVQE-LL-----VGPSIETLHAANNNISR----------VSC--------SRGQGKKNIYLANNKITMLRDLDEGCR 143 (317)
T ss_dssp CSSEEEE-EE-----ECTTCCEEECCSSCCSE----------EEE--------CCCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred cCCcccc-cc-----CCCCcCEEECCCCccCC----------cCc--------cccCCCCEEECCCCCCCCccchhhhcc
Confidence 9999983 33 33778888877653110 000 115689999999999998778789999
Q ss_pred CCCCEEEccCcccccCCccccc-CCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFE-NMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSY 240 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~ 240 (331)
++|++|++++|.+++..+..+. .+++|++|+|++|.+++. + ....+++|++|++++|.+++..|....+..+..+.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 9999999999999987777764 789999999999999865 3 234589999999999999976554333445555555
Q ss_pred cCC
Q 044710 241 IGN 243 (331)
Q Consensus 241 ~~n 243 (331)
.+|
T Consensus 222 ~~N 224 (317)
T 3o53_A 222 RNN 224 (317)
T ss_dssp TTS
T ss_pred cCC
Confidence 555
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.6e-21 Score=178.26 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=136.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++. | +..+++|++|++++|.+++. + ++++++|++|++++|++++. + + ..+++|++|+
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~--~~l~~L~~L~ 133 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--V--SQNPLLTYLN 133 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--C--TTCTTCCEEE
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--C--CCCCcCCEEE
Confidence 478999999999864 4 88889999999999999875 3 78899999999999998763 3 3 6788999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccc----cCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCch
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY----MGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPE 156 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~ 156 (331)
+++|.+++ ++ +..+++|+.|++..+... +........+.+..+....-....++.|+.|++++|.+++.
T Consensus 134 l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 134 CARNTLTE-ID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp CTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---
T ss_pred CCCCccce-ec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---
Confidence 99999885 44 667777887777765211 00111111111111110000023366778888888887754
Q ss_pred hhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCC-------CCCeEEcccCCCcccCC
Q 044710 157 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-------ALALLNLSYNRLWGRIP 227 (331)
Q Consensus 157 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-------~L~~L~ls~N~lsg~ip 227 (331)
.++.+++|+.|++++|++++ +| ++.+++|++|++++|++++..+..+..+. +|+.|++++|.+.|.+|
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 26677778888888888775 45 66777788888888877765544444333 34455555555555554
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=7.7e-21 Score=175.88 Aligned_cols=224 Identities=19% Similarity=0.249 Sum_probs=118.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
++.|+++++.++. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ + ..+++|++|++
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L 119 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L--ANLTNLTGLTL 119 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEEC
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--h--cCCCCCCEEEC
Confidence 5566666666653 44 35566666666666666664433 5666666666666666654332 2 45666666666
Q ss_pred cCCCCCCCCCccccCCccccccccccccccc----cCCccccceeEEEEcCch----------------------hhHHH
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY----MGGAFYNESITVVMKGHD----------------------FQLQK 135 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~~~~~~~----------------------~~~~~ 135 (331)
++|.+++ ++. +..+++|+.|++..+... +........+.+...... .....
T Consensus 120 ~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 120 FNNQITD-IDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp CSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred CCCCCCC-ChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 6666653 332 555666666655544211 000111111111111001 11123
Q ss_pred HhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeE
Q 044710 136 ILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 215 (331)
Q Consensus 136 ~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 215 (331)
.+++|+.|++++|.+++..| ++.+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 34555666666665554333 45566666666666666532 245666777777777777765443 6667777777
Q ss_pred EcccCCCcccCCCCCCCCccccccccCC
Q 044710 216 NLSYNRLWGRIPRGNQFNTFENDSYIGN 243 (331)
Q Consensus 216 ~ls~N~lsg~ip~~~~~~~~~~~~~~~n 243 (331)
++++|.+++..| ...+..+..+.+.+|
T Consensus 271 ~l~~n~l~~~~~-~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 271 KLGANQISNISP-LAGLTALTNLELNEN 297 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred ECCCCccCcccc-ccCCCccCeEEcCCC
Confidence 777777775433 333344444444444
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.9e-22 Score=163.09 Aligned_cols=162 Identities=20% Similarity=0.226 Sum_probs=138.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+ ..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEE
Confidence 47899999999998777789999999999999999998777788999999999999999987555444 7799999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.++ .+|...+.. +++|+.|++++|.+++..+..+..
T Consensus 107 L~~N~l~-~~~~~~~~~---------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 107 LNTNQLQ-SLPDGVFDK---------------------------------------LTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CCSSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCCCcCc-ccCHhHhcc---------------------------------------CCcCCEEECCCCccceeCHHHhcc
Confidence 9999998 455443332 567789999999999766777899
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 211 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 211 (331)
+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..++.++.
T Consensus 147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9999999999998774 4568999999999999999988876654
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=1e-21 Score=175.74 Aligned_cols=177 Identities=24% Similarity=0.235 Sum_probs=143.5
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhc-CCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLG-SLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
+.+++++++++ .+|..+.. .++.|+|++|.+++..+..|. ++++|++|+|++|++++..+..+ ..+++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence 46889999998 46765543 689999999999988787787 89999999999999987666655 78899999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.++ .++...|.. +++|+.|+|++|.+++..|..|..+
T Consensus 96 s~N~l~-~~~~~~~~~---------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 96 SSNHLH-TLDEFLFSD---------------------------------------LQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp CSSCCC-EECTTTTTT---------------------------------------CTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCcCC-cCCHHHhCC---------------------------------------CcCCCEEECCCCcccEECHHHhCCc
Confidence 999998 455443433 5677889999999998778899999
Q ss_pred CCCCEEEccCcccccCCcccc---cCCCCCcEEeCCCCcCCCCCcccccCCCC--CCeEEcccCCCcc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFNKLDGRIPEQLLSVTA--LALLNLSYNRLWG 224 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~ls~N~lsg 224 (331)
++|+.|+|++|++++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|++++|.+..
T Consensus 136 ~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 999999999999996555555 56899999999999999766677777776 4889999999874
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=163.99 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=143.2
Q ss_pred CccEEEccCCc-CCCCCchhhhCCCCCcEEeccC-CcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCcc-
Q 044710 1 NLRSLDLNNNK-LEGPLPISLAKCMKLEVVNVGN-NMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQ- 77 (331)
Q Consensus 1 ~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~- 77 (331)
+|++|++++|+ +++..+.+|.++++|++|++++ |.+++..+..|.++++|++|++++|++++ +|. + ..+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~ 131 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDI 131 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCS
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-c--cccccccc
Confidence 58999999997 9877777999999999999999 99998777889999999999999999987 555 3 6677777
Q ss_pred --EEEccCC-CCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCC-EEEcCCCcCCCC
Q 044710 78 --IIDLSHN-EFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFR-AMDFSSNRFHGE 153 (331)
Q Consensus 78 --~L~ls~n-~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~ 153 (331)
+|++++| .++ .+|...|.. +++|+ .|++++|.++ .
T Consensus 132 L~~L~l~~N~~l~-~i~~~~~~~---------------------------------------l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 132 FFILEITDNPYMT-SIPVNAFQG---------------------------------------LCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp EEEEEEESCTTCC-EECTTTTTT---------------------------------------TBSSEEEEECCSCCCC-E
T ss_pred ccEEECCCCcchh-hcCcccccc---------------------------------------hhcceeEEEcCCCCCc-c
Confidence 9999999 888 555544433 56678 8999999998 5
Q ss_pred CchhhhCCCCCCEEEccCcc-cccCCcccccCC-CCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCC
Q 044710 154 IPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 221 (331)
Q Consensus 154 ~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ 221 (331)
+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 66544444899999999995 997777889999 9999999999999854433 57789999998763
No 80
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.4e-21 Score=180.96 Aligned_cols=182 Identities=25% Similarity=0.336 Sum_probs=149.4
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.|+|++|++++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|++++ +|. + .. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l--~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L--PA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C--CT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h--hc--CCCEEE
Confidence 47899999999996 776553 78999999999998 566 457899999999999987 666 4 33 999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ +|. .+++|+.|+++.|.... .+. .+++|+.|++++|.+++ +|. +.
T Consensus 127 Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~---------------lp~----~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 127 VDNNQLTM-LPE----LPALLEYINADNNQLTM---------------LPE----LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp CCSSCCSC-CCC----CCTTCCEEECCSSCCSC---------------CCC----CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred CCCCcCCC-CCC----cCccccEEeCCCCccCc---------------CCC----cCCCcCEEECCCCCCCC-cch-hh-
Confidence 99999995 776 57888999888764210 000 26789999999999996 777 65
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCC-------cEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 228 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~ 228 (331)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|.+++.+|.
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 89999999999999 6776 654 77 99999999999 5788788899999999999999988775
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=159.08 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=123.2
Q ss_pred cEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccc
Q 044710 27 EVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDE 106 (331)
Q Consensus 27 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l 106 (331)
+.+++++|.++. +|..+. ..+++|+|++|++++..+... +..+++|++|++++|.+++ ++...|..
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~-i~~~~~~~--------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITD-IEEGAFEG--------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCC-GGGCTTCCEEECCSSCCCE-ECTTTTTT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhh-hccCCCCCEEECCCCcCCE-ECHHHhCC---------
Confidence 577888888774 555443 356788888888876544321 2677888888888888873 33322322
Q ss_pred cccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCC
Q 044710 107 QRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 186 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 186 (331)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..++
T Consensus 80 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 80 ------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp ------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred ------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 55678888888888877778889999999999999999988889999999
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 187 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 187 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
+|++|+|++|++++..|..+..+++|+.|++++|.+++..+
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99999999999998888999999999999999999986544
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=1e-20 Score=164.14 Aligned_cols=168 Identities=20% Similarity=0.310 Sum_probs=126.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+. +. + ..+++|++|+
T Consensus 47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l--~~l~~L~~L~ 118 (291)
T 1h6t_A 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SS-L--KDLKKLKSLS 118 (291)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-GG-G--TTCTTCCEEE
T ss_pred cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-hh-h--ccCCCCCEEE
Confidence 36677777777764 33 46677777777777777775444 67777777777777777652 21 2 5667777777
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ ++. ...+++|+.|++++|.+++. ..+..
T Consensus 119 L~~n~i~~-~~~-----------------------------------------l~~l~~L~~L~l~~n~l~~~--~~l~~ 154 (291)
T 1h6t_A 119 LEHNGISD-ING-----------------------------------------LVHLPQLESLYLGNNKITDI--TVLSR 154 (291)
T ss_dssp CTTSCCCC-CGG-----------------------------------------GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CCCCcCCC-Chh-----------------------------------------hcCCCCCCEEEccCCcCCcc--hhhcc
Confidence 77777663 221 12367889999999999954 57889
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++|+.|++++|++++..| +..+++|+.|++++|++++ ++ .+..+++|+.|++++|.++.
T Consensus 155 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9999999999999996655 8899999999999999986 44 48899999999999999974
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=6.5e-21 Score=158.60 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=59.6
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 217 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 217 (331)
++|++|+|++|.++...+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 44455556666665333444566777777777777777666777777777777777777777666666777777777777
Q ss_pred ccCCCcc
Q 044710 218 SYNRLWG 224 (331)
Q Consensus 218 s~N~lsg 224 (331)
++|.+..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 7777764
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.3e-20 Score=180.41 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=144.3
Q ss_pred ccEEEccCCcCC--CCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEE
Q 044710 2 LRSLDLNNNKLE--GPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQII 79 (331)
Q Consensus 2 L~~L~Ls~n~i~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 79 (331)
|+.|++++|.+. +..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++..|+.....+.. .+..+.+++.+
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l 450 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYL 450 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEE
T ss_pred cccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc-ccccccccccc
Confidence 445555555443 2234444555555555555555442 2334555666666666666554433322 23556677777
Q ss_pred EccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhh
Q 044710 80 DLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLG 159 (331)
Q Consensus 80 ~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~ 159 (331)
+++.|.+.+..+ ..+..++.++.|++..|.... ...+..+..+++|++|+|++|++++..|..|.
T Consensus 451 ~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~--------------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 451 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQE--------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp ECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGG--------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccccc-cccccchhhhhhhhhhccccc--------------ccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 777777764333 346666777777665542100 01112224478999999999999988999999
Q ss_pred CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCC-CCCCeEEcccCCCccc
Q 044710 160 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSYNRLWGR 225 (331)
Q Consensus 160 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~ls~N~lsg~ 225 (331)
.+++|++|+|++|++++..|..|+.+++|++|||++|+|++..|..+..+ ++|++|++++|++++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999889999999999999999999999999999888 6899999999999854
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.7e-20 Score=154.38 Aligned_cols=156 Identities=22% Similarity=0.213 Sum_probs=111.6
Q ss_pred CcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccccccc
Q 044710 26 LEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVD 105 (331)
Q Consensus 26 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~ 105 (331)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..+..+ ..+++|++|++++|.++ .+|...|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~-------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS-------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc--------
Confidence 456666666665 3444333 667777777777766555554 56677777777777775 444443322
Q ss_pred ccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCC
Q 044710 106 EQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 185 (331)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 185 (331)
+++|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus 87 -------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 134 (229)
T 3e6j_A 87 -------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134 (229)
T ss_dssp -------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC
T ss_pred -------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccC
Confidence 455677777777777666666778888888888888888 677788888
Q ss_pred CCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 186 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
++|++|+|++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 888888888888887766778888888889998888886544
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3e-21 Score=177.70 Aligned_cols=183 Identities=20% Similarity=0.210 Sum_probs=97.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCC-------------CeEEeecccccccCCCC
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPEL-------------KILELRSNRFYGPLCKS 67 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~~~~ 67 (331)
+|++|++++|.+ +.+|.+|+++++|++|++++|.+++.+|..++.+.+| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 478999999999 6999999999999999999999999999999988765 999999999876 3331
Q ss_pred CCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccc-cCCccccceeEEEEcCchhhHHHHhccCCEEEcC
Q 044710 68 NITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MGGAFYNESITVVMKGHDFQLQKILVMFRAMDFS 146 (331)
Q Consensus 68 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 146 (331)
.++|++|++++|.+++ +|.. +++|+.|+++.+... +... .++|++|+++
T Consensus 90 -----~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~~~--------------------~~~L~~L~L~ 139 (454)
T 1jl5_A 90 -----PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKALSDL--------------------PPLLEYLGVS 139 (454)
T ss_dssp -----CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCCCSC--------------------CTTCCEEECC
T ss_pred -----cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcccCC--------------------CCCCCEEECc
Confidence 3689999999999985 6643 367777777665311 1100 1345555555
Q ss_pred CCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 147 SNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 147 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+|.+++ +| .++.+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+..+++|++|++++|.++
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 555553 44 24555555555555555542 33221 244444444444443 22 2444444444444444444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.9e-23 Score=185.53 Aligned_cols=211 Identities=19% Similarity=0.233 Sum_probs=114.7
Q ss_pred CccEEEccCCcCCCCCch----hhhCCCCCcEEeccCC---cCccCchhhh-------cCCCCCCeEEeecccccc----
Q 044710 1 NLRSLDLNNNKLEGPLPI----SLAKCMKLEVVNVGNN---MISDSFPCWL-------GSLPELKILELRSNRFYG---- 62 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~----~~~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~---- 62 (331)
+|++|+|++|.|++..+. .|..+++|++|+|++| .+++.+|..+ ..+++|++|+|++|.+.+
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 478888888888866443 3667888888888885 4444555544 678888888888888865
Q ss_pred cCCCCCCCcCCCCccEEEccCCCCCCCCCccc---cCCc---------cccccccccccccccCCccccceeEEEEcCch
Q 044710 63 PLCKSNITFPFQALQIIDLSHNEFTGFLPTRI---FPGM---------EAMKNVDEQRRLEYMGGAFYNESITVVMKGHD 130 (331)
Q Consensus 63 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---~~~l---------~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (331)
.++..+ ..+++|++|++++|.+++..+..+ +..+ ++|+.|++..|...-.+... .
T Consensus 113 ~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----------l 179 (386)
T 2ca6_A 113 PLIDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-----------W 179 (386)
T ss_dssp HHHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-----------H
T ss_pred HHHHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-----------H
Confidence 233333 567888888888888863322221 1222 67777777665321000000 0
Q ss_pred hhHHHHhccCCEEEcCCCcCCC-----CCchhhhCCCCCCEEEccCcccc----cCCcccccCCCCCcEEeCCCCcCCCC
Q 044710 131 FQLQKILVMFRAMDFSSNRFHG-----EIPEVLGNFKSLKVLNLSHNSLT----GNIPVSFENMTALESLDLSFNKLDGR 201 (331)
Q Consensus 131 ~~~~~~~~~L~~L~ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~ 201 (331)
......+++|+.|++++|.++. .+|..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 0111223445555555554441 12224444455555555555543 33444444455555555555554433
Q ss_pred ----CcccccC--CCCCCeEEcccCCCcc
Q 044710 202 ----IPEQLLS--VTALALLNLSYNRLWG 224 (331)
Q Consensus 202 ----~~~~l~~--l~~L~~L~ls~N~lsg 224 (331)
++..+.. +++|+.|++++|.+++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 2333322 4455555555555544
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=5.3e-20 Score=154.06 Aligned_cols=155 Identities=23% Similarity=0.332 Sum_probs=132.2
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++....+..+ ..+++|++|+++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEECC
Confidence 57889999988 5676554 799999999999999889999999999999999999976544444 779999999999
Q ss_pred CCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK 162 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~ 162 (331)
+|.++ .+|...+.. +++|+.|++++|.++ .+|..+..++
T Consensus 97 ~N~l~-~l~~~~~~~---------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~ 135 (229)
T 3e6j_A 97 TNQLT-VLPSAVFDR---------------------------------------LVHLKELFMCCNKLT-ELPRGIERLT 135 (229)
T ss_dssp SSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCC-SCCTTGGGCT
T ss_pred CCcCC-ccChhHhCc---------------------------------------chhhCeEeccCCccc-ccCcccccCC
Confidence 99998 555444433 567789999999999 8899999999
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCc
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 203 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 203 (331)
+|+.|+|++|++++..+..|..+++|+.|+|++|.+....+
T Consensus 136 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999999997777789999999999999999986543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.4e-22 Score=182.98 Aligned_cols=217 Identities=18% Similarity=0.246 Sum_probs=164.0
Q ss_pred CccEEEccCC---cCCCCCchhh-------hCCCCCcEEeccCCcCcc----CchhhhcCCCCCCeEEeecccccccCCC
Q 044710 1 NLRSLDLNNN---KLEGPLPISL-------AKCMKLEVVNVGNNMISD----SFPCWLGSLPELKILELRSNRFYGPLCK 66 (331)
Q Consensus 1 ~L~~L~Ls~n---~i~~~~p~~~-------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 66 (331)
+|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+....+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 5899999996 4556667665 789999999999999997 4778889999999999999998643222
Q ss_pred CCC--CcCC---------CCccEEEccCCCCC-CCCCc--cccCCccccccccccccccccCCccccceeEEEEcCchhh
Q 044710 67 SNI--TFPF---------QALQIIDLSHNEFT-GFLPT--RIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQ 132 (331)
Q Consensus 67 ~~~--~~~l---------~~L~~L~ls~n~l~-~~~p~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (331)
.+. ...+ ++|++|++++|.++ +.+|. ..+..+++|+.|++..|.....+.. .....
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~----------~l~~~ 210 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE----------HLLLE 210 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH----------HHHHT
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH----------HHHHH
Confidence 210 0223 89999999999997 33332 2355677888888877531100000 00000
Q ss_pred HHHHhccCCEEEcCCCcCC----CCCchhhhCCCCCCEEEccCcccccC----Cccccc--CCCCCcEEeCCCCcCCC--
Q 044710 133 LQKILVMFRAMDFSSNRFH----GEIPEVLGNFKSLKVLNLSHNSLTGN----IPVSFE--NMTALESLDLSFNKLDG-- 200 (331)
Q Consensus 133 ~~~~~~~L~~L~ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~-- 200 (331)
....+++|+.|++++|.++ ..+|..+..+++|+.|+|++|.+++. +|..+. .+++|++|+|++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 2234789999999999996 56888999999999999999999876 566664 48999999999999997
Q ss_pred --CCcccc-cCCCCCCeEEcccCCCcccCC
Q 044710 201 --RIPEQL-LSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 201 --~~~~~l-~~l~~L~~L~ls~N~lsg~ip 227 (331)
.+|..+ .++++|++|++++|.+++..|
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477766 668999999999999997654
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=3.4e-20 Score=175.84 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=120.6
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
|+.|++++|.|.. ++ .|..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+. + .+ ..+++|++|+|
T Consensus 45 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l--~~l~~L~~L~L 116 (605)
T 1m9s_A 45 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SL--KDLKKLKSLSL 116 (605)
T ss_dssp CCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TS--TTCTTCCEEEC
T ss_pred CCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hh--ccCCCCCEEEe
Confidence 5566666666653 33 46666666666666666665443 56666666666666666542 2 22 45666666666
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.+.+ ++. ...+++|+.|+|++|.+++. ..+..+
T Consensus 117 s~N~l~~-l~~-----------------------------------------l~~l~~L~~L~Ls~N~l~~l--~~l~~l 152 (605)
T 1m9s_A 117 EHNGISD-ING-----------------------------------------LVHLPQLESLYLGNNKITDI--TVLSRL 152 (605)
T ss_dssp TTSCCCC-CGG-----------------------------------------GGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred cCCCCCC-Ccc-----------------------------------------ccCCCccCEEECCCCccCCc--hhhccc
Confidence 6666652 221 12367889999999999854 678899
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
++|+.|+|++|.+++..| +..+++|+.|+|++|+|++. ..+..+++|+.|++++|.+++.
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 999999999999997666 88999999999999999864 3688899999999999999854
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.9e-20 Score=153.84 Aligned_cols=153 Identities=19% Similarity=0.286 Sum_probs=132.7
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+ ..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 46889999998 5676655 589999999999998878889999999999999999988777776 789999999999
Q ss_pred CCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK 162 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~ 162 (331)
+|.++ .+|...|.. +++|+.|++++|.+++..|..|..++
T Consensus 89 ~N~l~-~l~~~~f~~---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEG---------------------------------------LFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp SSCCC-CCCTTTTTT---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcCC-ccCHhHccC---------------------------------------CCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 99998 667655443 56678899999999988889999999
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCC
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 200 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 200 (331)
+|+.|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999999998888889999999999999998864
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=8.3e-22 Score=176.47 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=120.6
Q ss_pred ccEEEccCCcCCCCCc----hhhhCCC-CCcEEeccCCcCccCchhhhcCC-----CCCCeEEeecccccccCCCCCC--
Q 044710 2 LRSLDLNNNKLEGPLP----ISLAKCM-KLEVVNVGNNMISDSFPCWLGSL-----PELKILELRSNRFYGPLCKSNI-- 69 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~-- 69 (331)
|++|+|++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|++++..+..+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 5667777777665555 5666666 67777777777666555555543 6677777777766543332110
Q ss_pred CcCC-CCccEEEccCCCCCCCCCccc---cCC-ccccccccccccccccCCccccceeEEEEcCchhhHHHHh-ccCCEE
Q 044710 70 TFPF-QALQIIDLSHNEFTGFLPTRI---FPG-MEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKIL-VMFRAM 143 (331)
Q Consensus 70 ~~~l-~~L~~L~ls~n~l~~~~p~~~---~~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L 143 (331)
+..+ ++|++|++++|.+++..+..+ +.. .++|+.|+++.|.....+.. ......... +.|++|
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----------~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-----------ELIQILAAIPANVNSL 172 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-----------HHHHHHHTSCTTCCEE
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-----------HHHHHHhcCCccccEe
Confidence 0122 567777777777664333221 222 24566666555421100000 000011112 377888
Q ss_pred EcCCCcCCCCCchhhh----CC-CCCCEEEccCcccccC----CcccccC-CCCCcEEeCCCCcCCCCCc----ccccCC
Q 044710 144 DFSSNRFHGEIPEVLG----NF-KSLKVLNLSHNSLTGN----IPVSFEN-MTALESLDLSFNKLDGRIP----EQLLSV 209 (331)
Q Consensus 144 ~ls~n~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~~----~~l~~l 209 (331)
++++|.+++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 8888888766664433 34 5788888888887753 3344444 3478888888888876544 234566
Q ss_pred CCCCeEEcccCCCc
Q 044710 210 TALALLNLSYNRLW 223 (331)
Q Consensus 210 ~~L~~L~ls~N~ls 223 (331)
+.|+.|++++|.++
T Consensus 253 ~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 253 KHLQTVYLDYDIVK 266 (362)
T ss_dssp TTCSEEEEEHHHHT
T ss_pred CCccEEEeccCCcc
Confidence 77888888888744
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.3e-21 Score=173.27 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=125.6
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccC-chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDS-FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
++.|++++|.+++..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~ 148 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLN 148 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEE
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEE
Confidence 56667777776655443 44567777777777776654 56666677777777777776655444443 4466777777
Q ss_pred ccCC-CCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhc-cCCEEEcCCC--cCC-CCCc
Q 044710 81 LSHN-EFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILV-MFRAMDFSSN--RFH-GEIP 155 (331)
Q Consensus 81 ls~n-~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~ls~n--~l~-~~~p 155 (331)
+++| .+++......+..+++|+.|++..+..... .........++ +|++|++++| .++ +.+|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 7777 455321122345566666666554310000 00112234466 7888888887 444 3456
Q ss_pred hhhhCCCCCCEEEccCcc-cccCCcccccCCCCCcEEeCCCCc-CCCCCcccccCCCCCCeEEcccC
Q 044710 156 EVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNK-LDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 156 ~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 667777888888888887 666666777777888888888874 33222225667778888888877
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=9.5e-22 Score=174.14 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=163.5
Q ss_pred CccEEEccCCcCCCC-CchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecc-ccccc-CCCCCCCcCCCCcc
Q 044710 1 NLRSLDLNNNKLEGP-LPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN-RFYGP-LCKSNITFPFQALQ 77 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~~L~ 77 (331)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+ ..+++|+
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~ 171 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLD 171 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCC
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCC
Confidence 589999999999866 8889999999999999999999888999999999999999999 57642 33323 5689999
Q ss_pred EEEccCC-CCCCCCCccccCCcc-ccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCc-CCCCC
Q 044710 78 IIDLSHN-EFTGFLPTRIFPGME-AMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNR-FHGEI 154 (331)
Q Consensus 78 ~L~ls~n-~l~~~~p~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~ 154 (331)
+|++++| .+++......+..++ +|+.|++..+...+.. .........+++|+.|++++|. +++..
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------------HHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 9999999 888542223467788 8999988765311110 0112233458899999999999 77788
Q ss_pred chhhhCCCCCCEEEccCcc-cccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC
Q 044710 155 PEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 229 (331)
Q Consensus 155 p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~ 229 (331)
+..+..+++|++|++++|. +.......++.+++|++|++++| ++...-..+. ..+..|++++|.+++..|..
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 8899999999999999995 43333336888999999999999 5543322222 24677889999999988864
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=3.8e-20 Score=161.92 Aligned_cols=204 Identities=15% Similarity=0.156 Sum_probs=160.6
Q ss_pred ccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCC
Q 044710 7 LNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEF 86 (331)
Q Consensus 7 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 86 (331)
+..+.+++.+ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++.+..+ + ..+++|++|++++|.+
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~--~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNPL 97 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCCC
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--H--ccCCCCCEEEccCCcC
Confidence 4455555432 35567899999999999985 45 58899999999999999986443 3 7899999999999999
Q ss_pred CCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCE
Q 044710 87 TGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKV 166 (331)
Q Consensus 87 ~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 166 (331)
++ ++ .+..+++|+.|+++.+.... .. ....+++|+.|++++|.+++. +. +..+++|+.
T Consensus 98 ~~-~~--~~~~l~~L~~L~l~~n~l~~---------------~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~ 155 (308)
T 1h6u_A 98 KN-VS--AIAGLQSIKTLDLTSTQITD---------------VT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQY 155 (308)
T ss_dssp SC-CG--GGTTCTTCCEEECTTSCCCC---------------CG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCE
T ss_pred CC-ch--hhcCCCCCCEEECCCCCCCC---------------ch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccE
Confidence 84 44 37889999999988764111 01 124478999999999999954 43 889999999
Q ss_pred EEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcC
Q 044710 167 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 245 (331)
Q Consensus 167 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~ 245 (331)
|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|.+++..| ...+..+..+.+.+|+.
T Consensus 156 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 156 LSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred EEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 99999999964 43 8999999999999999986543 8889999999999999996654 34455566666667654
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=4.5e-20 Score=169.87 Aligned_cols=199 Identities=25% Similarity=0.262 Sum_probs=103.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|++++ +| .+.++++|++|++++|.+++ +|.. .++|++|++++|++. .+|. + ..+++|++|+
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~--~~l~~L~~L~ 243 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L--QNLPFLTTIY 243 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C--TTCTTCCEEE
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c--CCCCCCCEEE
Confidence 35666666666664 44 46667777777777776664 3322 136666777777665 3443 3 6788888888
Q ss_pred ccCCCCCCCCCccccCCcccccccccccccc-ccCCcc-ccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-YMGGAF-YNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL 158 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 158 (331)
+++|.++ .+|.. +++|+.|++..|.. .+.... ....+.+..+.... .....++|+.|++++|.+++ ++
T Consensus 244 l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~-i~--- 313 (454)
T 1jl5_A 244 ADNNLLK-TLPDL----PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRS-LC--- 313 (454)
T ss_dssp CCSSCCS-SCCSC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSE-EC---
T ss_pred CCCCcCC-ccccc----ccccCEEECCCCcccccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCc-cc---
Confidence 8888887 35532 35666666655431 111000 00011110000000 00011345555555555542 11
Q ss_pred hCC-CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc--cCCC
Q 044710 159 GNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG--RIPR 228 (331)
Q Consensus 159 ~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg--~ip~ 228 (331)
.+ ++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|.+++ .+|.
T Consensus 314 -~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 314 -DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred -CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 12 356666666666663 4432 3556666666666653 443 24556666666666665 4444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.6e-20 Score=165.98 Aligned_cols=105 Identities=19% Similarity=0.129 Sum_probs=71.1
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccC-cccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
..++.|++++|.++ .+|.......+|+.+++++ |.++...+..|..+++|++|||++|+|+...+.. +..|+.|.
T Consensus 154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEE
T ss_pred hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhh
Confidence 46788999999998 5665555667899999985 5666444467899999999999999998554444 44566666
Q ss_pred cccCCCcccCCCCCCCCccccccccCCcCCc
Q 044710 217 LSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 247 (331)
Q Consensus 217 ls~N~lsg~ip~~~~~~~~~~~~~~~n~~lc 247 (331)
+.++.--..+|....+..+..... .+++.|
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred hccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence 555543446776555555544433 344433
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.5e-20 Score=165.78 Aligned_cols=179 Identities=23% Similarity=0.251 Sum_probs=140.6
Q ss_pred CcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCc-CCCCccEEEccCCCCCCCCCccccCCccccccc
Q 044710 26 LEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITF-PFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNV 104 (331)
Q Consensus 26 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l 104 (331)
-+.++++++.++. +|..+. ..+++|+|++|++++..+..+ . .+++|++|++++|+++ .++...|..
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~--~~~l~~L~~L~L~~N~i~-~i~~~~~~~------- 86 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLN-FISSEAFVP------- 86 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSS--SSCCTTCCEEECCSSCCC-EECTTTTTT-------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhh--hhcccccCEEECCCCcCC-ccChhhccC-------
Confidence 4689999999984 665554 468999999999987665554 4 7899999999999998 444333332
Q ss_pred cccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccC
Q 044710 105 DEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 184 (331)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 184 (331)
+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..
T Consensus 87 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 87 --------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred --------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 567789999999999777778999999999999999999888999999
Q ss_pred CCCCcEEeCCCCcCCCCCcccc---cCCCCCCeEEcccCCCcccCCCCC-CCCc--cccccccCCcCCcCC
Q 044710 185 MTALESLDLSFNKLDGRIPEQL---LSVTALALLNLSYNRLWGRIPRGN-QFNT--FENDSYIGNIHLCGE 249 (331)
Q Consensus 185 l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~ls~N~lsg~ip~~~-~~~~--~~~~~~~~n~~lc~~ 249 (331)
+++|+.|+|++|+|++..+..+ ..+++|+.|++++|.|++..+... .+.. +..+.+.+|++.|++
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 9999999999999997655555 578999999999999984322110 1111 244567888888875
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=3.3e-20 Score=158.59 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=139.7
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEc
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDL 81 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 81 (331)
++.+++++|.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ + ..+++|++|++
T Consensus 21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~L 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELSV 92 (263)
T ss_dssp HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEEC
T ss_pred HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEEC
Confidence 3456788888884 44 68889999999999999984 45 68899999999999999987544 3 77999999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCC
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNF 161 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l 161 (331)
++|.+++ +|... ..+|+.|++++|.+++ ++ .+..+
T Consensus 93 ~~N~l~~-l~~~~------------------------------------------~~~L~~L~L~~N~l~~-~~-~l~~l 127 (263)
T 1xeu_A 93 NRNRLKN-LNGIP------------------------------------------SACLSRLFLDNNELRD-TD-SLIHL 127 (263)
T ss_dssp CSSCCSC-CTTCC------------------------------------------CSSCCEEECCSSCCSB-SG-GGTTC
T ss_pred CCCccCC-cCccc------------------------------------------cCcccEEEccCCccCC-Ch-hhcCc
Confidence 9999983 44321 1567899999999995 44 58999
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 128 ~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999999999964 4 688999999999999999976 6788999999999999999855
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.7e-21 Score=172.20 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=157.0
Q ss_pred EEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCch----hhhcCCC-CCCeEEeecccccccCCCCCCCcCC-----
Q 044710 4 SLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFP----CWLGSLP-ELKILELRSNRFYGPLCKSNITFPF----- 73 (331)
Q Consensus 4 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l----- 73 (331)
.++++.|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|++++..+..+ ..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccC
Confidence 57899999999889888877889999999999998777 7888898 99999999999987544433 332
Q ss_pred CCccEEEccCCCCCCCCCccc---cCCc-cccccccccccccccCCccccceeEEEEcCchhhH-HHH----hccCCEEE
Q 044710 74 QALQIIDLSHNEFTGFLPTRI---FPGM-EAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQL-QKI----LVMFRAMD 144 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~p~~~---~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~L~~L~ 144 (331)
++|++|++++|.+++..+..+ +..+ ++|+.|+++.|.... ..... ... ..+|++|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------------~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS---------------KSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG---------------SCHHHHHHHHTTSCTTCCEEE
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc---------------HHHHHHHHHHHhCCCceeEEE
Confidence 899999999999986555432 3333 788888887764211 11111 111 25899999
Q ss_pred cCCCcCCCCCc----hhhhCCC-CCCEEEccCcccccCCccccc----CC-CCCcEEeCCCCcCCCC----CcccccC-C
Q 044710 145 FSSNRFHGEIP----EVLGNFK-SLKVLNLSHNSLTGNIPVSFE----NM-TALESLDLSFNKLDGR----IPEQLLS-V 209 (331)
Q Consensus 145 ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~l~~-l 209 (331)
+++|.+++..+ ..+..++ +|++|+|++|++++..+..+. .. ++|++|||++|.+++. ++..+.. .
T Consensus 145 Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred ccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 99999996544 4456665 999999999999987775444 44 6999999999999874 3445544 4
Q ss_pred CCCCeEEcccCCCcccC
Q 044710 210 TALALLNLSYNRLWGRI 226 (331)
Q Consensus 210 ~~L~~L~ls~N~lsg~i 226 (331)
++|++|++++|.+++..
T Consensus 225 ~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TTCCEEECCSSCCCCCC
T ss_pred CCceEEECcCCCCCcHH
Confidence 69999999999998643
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.3e-19 Score=170.48 Aligned_cols=82 Identities=32% Similarity=0.386 Sum_probs=50.6
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 217 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 217 (331)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 456666666666653 44 34456666666666666 3444 4556667777777666 55666666677777777
Q ss_pred ccCCCcccCCC
Q 044710 218 SYNRLWGRIPR 228 (331)
Q Consensus 218 s~N~lsg~ip~ 228 (331)
++|.+++.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 77777665553
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=149.77 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=130.3
Q ss_pred CCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCc
Q 044710 50 LKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGH 129 (331)
Q Consensus 50 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (331)
-+++++++|.++. +|..+ ...+++|++++|.+++..|...+.
T Consensus 13 ~~~l~~s~n~l~~-iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~--------------------------------- 54 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI----PQYTAELRLNNNEFTVLEATGIFK--------------------------------- 54 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC----CTTCSEEECCSSCCCEECCCCCGG---------------------------------
T ss_pred CCEeEeCCCCccc-CccCC----CCCCCEEEcCCCcCCccCchhhhc---------------------------------
Confidence 4689999999975 56654 356799999999998554544332
Q ss_pred hhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCC
Q 044710 130 DFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 209 (331)
Q Consensus 130 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 209 (331)
.+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+
T Consensus 55 ------~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 55 ------KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp ------GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred ------cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 26678999999999998777899999999999999999998888889999999999999999999989999999
Q ss_pred CCCCeEEcccCCCcccCCCCC-CCCccccccccCCcCCcCCC
Q 044710 210 TALALLNLSYNRLWGRIPRGN-QFNTFENDSYIGNIHLCGEP 250 (331)
Q Consensus 210 ~~L~~L~ls~N~lsg~ip~~~-~~~~~~~~~~~~n~~lc~~~ 250 (331)
++|++|++++|.+++..|... .+..+..+.+.+|++-|.++
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999998877543 34556666777887776543
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1e-19 Score=148.66 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=124.7
Q ss_pred hhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcc
Q 044710 20 LAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGME 99 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~ 99 (331)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+ ..+++|++|++++|.+++..|.. +.
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l--~~l~~L~~L~l~~n~l~~~~~~~-l~--- 109 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPI--SGLSNLERLRIMGKDVTSDKIPN-LS--- 109 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGG--TTCTTCCEEEEECTTCBGGGSCC-CT---
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhh--hcCCCCCEEEeECCccCcccChh-hc---
Confidence 366778999999999998 455 58889999999999997653 2233 67899999999999998655543 22
Q ss_pred ccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcc-cccCC
Q 044710 100 AMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNI 178 (331)
Q Consensus 100 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~ 178 (331)
.+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+
T Consensus 110 ------------------------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~ 152 (197)
T 4ezg_A 110 ------------------------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DI 152 (197)
T ss_dssp ------------------------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC
T ss_pred ------------------------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-cc
Confidence 25678899999999998889999999999999999998 65 55
Q ss_pred cccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcc
Q 044710 179 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 179 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 6 68899999999999999986 33 68889999999999999864
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.2e-19 Score=161.57 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=153.0
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccE-EEc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQI-IDL 81 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~-L~l 81 (331)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.++... +.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcc
Confidence 45777888888 6776663 578999999999986666778899999999999998876555432 366777665 566
Q ss_pred cCCCCCCCCCccccCCccccccccccccccc-cCCccccceeEEEEcCchhhHHHHhccCCEEEcCC-CcCCCCCchhhh
Q 044710 82 SHNEFTGFLPTRIFPGMEAMKNVDEQRRLEY-MGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSS-NRFHGEIPEVLG 159 (331)
Q Consensus 82 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~l~ 159 (331)
+.|+++ .++...|..+++|+.+++..+... ..... ......+..+++.+ +.+....+..|.
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~----------------~~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVH----------------KIHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCT----------------TCCBSSCEEEEEESCTTCCEECTTSST
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchh----------------hcccchhhhhhhccccccccccccchh
Confidence 678888 666667888899998888776321 11100 01134556777755 566644445666
Q ss_pred CCC-CCCEEEccCcccccCCcccccCCCCCcEEeCCC-CcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCcccc
Q 044710 160 NFK-SLKVLNLSHNSLTGNIPVSFENMTALESLDLSF-NKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFEN 237 (331)
Q Consensus 160 ~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~ 237 (331)
.+. .++.|++++|+|+. +|.......+|++|++++ |.++...++.|..+++|++||+++|+|+ .+|.. .+..+..
T Consensus 151 ~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~-~~~~L~~ 227 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKK 227 (350)
T ss_dssp TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS-SCTTCCE
T ss_pred hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh-hhccchH
Confidence 664 68899999999995 454444667899999986 6676555567899999999999999999 55653 2445555
Q ss_pred ccccCC
Q 044710 238 DSYIGN 243 (331)
Q Consensus 238 ~~~~~n 243 (331)
+...++
T Consensus 228 L~~l~~ 233 (350)
T 4ay9_X 228 LRARST 233 (350)
T ss_dssp EECTTC
T ss_pred hhhccC
Confidence 444444
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.5e-19 Score=146.37 Aligned_cols=150 Identities=18% Similarity=0.261 Sum_probs=124.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+ ..+++|++|+
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ 118 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLD 118 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEE
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEE
Confidence 4789999999999 566 79999999999999998763 3478999999999999999988677776 7899999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCc-CCCCCchhhh
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNR-FHGEIPEVLG 159 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~p~~l~ 159 (331)
+++|.+++..|.. + ..+++|++|++++|. ++ .+| .+.
T Consensus 119 Ls~n~i~~~~~~~-l---------------------------------------~~l~~L~~L~L~~n~~i~-~~~-~l~ 156 (197)
T 4ezg_A 119 ISHSAHDDSILTK-I---------------------------------------NTLPKVNSIDLSYNGAIT-DIM-PLK 156 (197)
T ss_dssp CCSSBCBGGGHHH-H---------------------------------------TTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred ecCCccCcHhHHH-H---------------------------------------hhCCCCCEEEccCCCCcc-ccH-hhc
Confidence 9999998644433 2 226788999999998 65 666 689
Q ss_pred CCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCC
Q 044710 160 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 200 (331)
Q Consensus 160 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 200 (331)
.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99999999999999995 44 68899999999999999864
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=8.1e-22 Score=185.87 Aligned_cols=182 Identities=25% Similarity=0.338 Sum_probs=146.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCc-------------CccCchhhhcCCCCCCeEE-eecccccccCCC
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM-------------ISDSFPCWLGSLPELKILE-LRSNRFYGPLCK 66 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~~~ 66 (331)
+|+.|+|++|.++ .+|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+......
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 3667889999997 789999999999999998775 5667788888888888888 565543210000
Q ss_pred -----CCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCC
Q 044710 67 -----SNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFR 141 (331)
Q Consensus 67 -----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 141 (331)
.+.......|+.|++++|.+++ +|. + ..+++|+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~---------------------------------------~~l~~L~ 466 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH--L---------------------------------------EQLLLVT 466 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--G---------------------------------------GGGTTCC
T ss_pred hhhcccccccCccCceEEEecCCCCCC-CcC--c---------------------------------------cccccCc
Confidence 0000012358899999999984 553 2 2267889
Q ss_pred EEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCC-cccccCCCCCCeEEcccC
Q 044710 142 AMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQLLSVTALALLNLSYN 220 (331)
Q Consensus 142 ~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~ls~N 220 (331)
.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|++|+|++|+|++.. |..+..+++|+.|++++|
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999999999 889999999999999999999996 67 8999999999999999999887 999999999999999999
Q ss_pred CCcccCCC
Q 044710 221 RLWGRIPR 228 (331)
Q Consensus 221 ~lsg~ip~ 228 (331)
.+++..|.
T Consensus 544 ~l~~~~~~ 551 (567)
T 1dce_A 544 SLCQEEGI 551 (567)
T ss_dssp GGGGSSSC
T ss_pred cCCCCccH
Confidence 99987664
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.7e-18 Score=164.47 Aligned_cols=74 Identities=30% Similarity=0.337 Sum_probs=47.0
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCC-CCCCccccccc
Q 044710 162 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG-NQFNTFENDSY 240 (331)
Q Consensus 162 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~-~~~~~~~~~~~ 240 (331)
++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|++++|.|+ .+|.. ..+..+..+.+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 567777777777774 44 34567778888888777 3444 4677888888888887 55643 22333444455
Q ss_pred cCCc
Q 044710 241 IGNI 244 (331)
Q Consensus 241 ~~n~ 244 (331)
.+|+
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5554
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.1e-19 Score=153.46 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=145.6
Q ss_pred EccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCC
Q 044710 6 DLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNE 85 (331)
Q Consensus 6 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 85 (331)
.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ + ..+++|++|++++|.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l--~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L--ANLKNLGWLFLDENK 101 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--c--ccCCCCCEEECCCCc
Confidence 34555555432 345778899999999999854 4 48889999999999999987544 3 779999999999999
Q ss_pred CCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCC
Q 044710 86 FTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLK 165 (331)
Q Consensus 86 l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 165 (331)
+++ +|. + ..+++|+.|++++|.+++ + ..+..+++|+
T Consensus 102 l~~-~~~--l---------------------------------------~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~ 137 (291)
T 1h6t_A 102 VKD-LSS--L---------------------------------------KDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 137 (291)
T ss_dssp CCC-GGG--G---------------------------------------TTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred CCC-Chh--h---------------------------------------ccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence 883 332 1 226788999999999985 4 4688999999
Q ss_pred EEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCcC
Q 044710 166 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 245 (331)
Q Consensus 166 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~~ 245 (331)
.|++++|++++. ..++.+++|++|++++|++++..+ +..+++|++|++++|.+++ +|....+..+..+.+.+|+.
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcc
Confidence 999999999965 578999999999999999997654 8899999999999999985 45555555666666777753
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=2.2e-19 Score=146.13 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=73.6
Q ss_pred hccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45667777778888777777888888888888888888877777788888888888888888888788888888888888
Q ss_pred cccCCCcccCC
Q 044710 217 LSYNRLWGRIP 227 (331)
Q Consensus 217 ls~N~lsg~ip 227 (331)
+++|.+++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88888886655
No 110
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1e-20 Score=174.65 Aligned_cols=222 Identities=18% Similarity=0.101 Sum_probs=130.8
Q ss_pred CccEEEccCCcCCCCC----chhhhCCCCCcEEeccCCcCccCchhhhc-----CCCCCCeEEeeccccccc----CCCC
Q 044710 1 NLRSLDLNNNKLEGPL----PISLAKCMKLEVVNVGNNMISDSFPCWLG-----SLPELKILELRSNRFYGP----LCKS 67 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~----p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~ 67 (331)
+|++|++++|++++.. +..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 4788999999888643 56677788899999999888765444443 356888888888877642 2222
Q ss_pred CCCcCCCCccEEEccCCCCCCCC----CccccCCcccccccccccccccc------CC----ccccceeEEEEcCchh--
Q 044710 68 NITFPFQALQIIDLSHNEFTGFL----PTRIFPGMEAMKNVDEQRRLEYM------GG----AFYNESITVVMKGHDF-- 131 (331)
Q Consensus 68 ~~~~~l~~L~~L~ls~n~l~~~~----p~~~~~~l~~L~~l~l~~~~~~~------~~----~~~~~~~~~~~~~~~~-- 131 (331)
+ ..+++|++|++++|.+++.. ...++..+++|+.|++..+.... .. ......+.+..+....
T Consensus 223 l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 223 V--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp H--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred H--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 2 45678888888888776421 12233456777777776652111 00 0011111111111100
Q ss_pred -h-HHHH----hccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcccccCCcccccC-----CCCCcEEeCCCC
Q 044710 132 -Q-LQKI----LVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN-----MTALESLDLSFN 196 (331)
Q Consensus 132 -~-~~~~----~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N 196 (331)
. +... .+.|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 0 1111 14667777777766654 4455566677777777777666544443332 456777777777
Q ss_pred cCCC----CCcccccCCCCCCeEEcccCCCcc
Q 044710 197 KLDG----RIPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 197 ~l~~----~~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
.+++ .+|..+..+++|++|++++|.+++
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 7664 455666666777777777776653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=6.5e-19 Score=167.09 Aligned_cols=183 Identities=19% Similarity=0.233 Sum_probs=147.2
Q ss_pred EEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCC
Q 044710 5 LDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHN 84 (331)
Q Consensus 5 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 84 (331)
+.++.+.+.+.. .+..+.+|+.|++++|.+... + .+..+++|++|+|++|++.+..+ + ..+++|+.|+|++|
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L--TNLKNLGWLFLDEN 97 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--G--GGCTTCCEEECCSS
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--h--ccCCCCCEEECcCC
Confidence 345666666443 356788999999999999854 4 58899999999999999987544 3 77999999999999
Q ss_pred CCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCC
Q 044710 85 EFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSL 164 (331)
Q Consensus 85 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L 164 (331)
.+.+ +| . + ..+++|+.|+|++|.+++ + ..+..+++|
T Consensus 98 ~l~~-l~-~-l---------------------------------------~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 133 (605)
T 1m9s_A 98 KIKD-LS-S-L---------------------------------------KDLKKLKSLSLEHNGISD-I-NGLVHLPQL 133 (605)
T ss_dssp CCCC-CT-T-S---------------------------------------TTCTTCCEEECTTSCCCC-C-GGGGGCTTC
T ss_pred CCCC-Ch-h-h---------------------------------------ccCCCCCEEEecCCCCCC-C-ccccCCCcc
Confidence 9883 33 1 1 126778999999999995 4 458899999
Q ss_pred CEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCCCCCCCCccccccccCCc
Q 044710 165 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNI 244 (331)
Q Consensus 165 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip~~~~~~~~~~~~~~~n~ 244 (331)
+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|++. |....+..+..+.+.+|+
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 9999999999965 678999999999999999997766 89999999999999999964 655555666666666664
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4e-18 Score=145.60 Aligned_cols=147 Identities=22% Similarity=0.329 Sum_probs=124.6
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|++++|+++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++.. .. ++|++|+
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~---~~-~~L~~L~ 112 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI---PS-ACLSRLF 112 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC---CC-SSCCEEE
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc---cc-CcccEEE
Confidence 5899999999998 456 79999999999999999997655 8999999999999999986 3432 22 8999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ ++. +. .+++|+.|++++|++++ ++ .+..
T Consensus 113 L~~N~l~~-~~~--l~---------------------------------------~l~~L~~L~Ls~N~i~~-~~-~l~~ 148 (263)
T 1xeu_A 113 LDNNELRD-TDS--LI---------------------------------------HLKNLEILSIRNNKLKS-IV-MLGF 148 (263)
T ss_dssp CCSSCCSB-SGG--GT---------------------------------------TCTTCCEEECTTSCCCB-CG-GGGG
T ss_pred ccCCccCC-Chh--hc---------------------------------------CcccccEEECCCCcCCC-Ch-HHcc
Confidence 99999984 331 21 26778999999999995 45 6889
Q ss_pred CCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCC
Q 044710 161 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 202 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 202 (331)
+++|+.|++++|++++. ..+..+++|+.|++++|.+++..
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999999999999976 67899999999999999998653
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.2e-18 Score=140.15 Aligned_cols=133 Identities=22% Similarity=0.307 Sum_probs=85.1
Q ss_pred cEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccc
Q 044710 27 EVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDE 106 (331)
Q Consensus 27 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l 106 (331)
+++++++|.++ .+|..+. .+|++|++++|++++..+.. .+..+++|++|++++|.+++..|.. +..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~--------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDG-LFGRLPHLVKLELKRNQLTGIEPNA-FEG--------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCBCTTT-TTT---------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcc-ccccCCCCCEEECCCCCCCCcCHhH-cCC---------
Confidence 45666666664 3443332 25666666666665433321 1245666666666666666433332 221
Q ss_pred cccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCC
Q 044710 107 QRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 186 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 186 (331)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|..++
T Consensus 77 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 77 ------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp ------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred ------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 44556667777777766666677788888888888888888888888888
Q ss_pred CCcEEeCCCCcCCCCCc
Q 044710 187 ALESLDLSFNKLDGRIP 203 (331)
Q Consensus 187 ~L~~L~Ls~N~l~~~~~ 203 (331)
+|++|+|++|.+++..+
T Consensus 127 ~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 127 SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECTTCCBCCSGG
T ss_pred CCCEEEeCCCCccCcCc
Confidence 88888888888886644
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.2e-18 Score=163.74 Aligned_cols=167 Identities=24% Similarity=0.289 Sum_probs=136.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|++|+|++|+|+ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+|++|++++ +|. .+++|++|+
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~ 146 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-----LPALLEYIN 146 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-----CCTTCCEEE
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-----cCccccEEe
Confidence 4899999999999 677 557899999999999997 666 665 99999999999987 555 378999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+++|.+++ +|. .+++|+.|+++.|.... .+. + .++|+.|++++|.++ .+|. +..
T Consensus 147 Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~---------------lp~-l---~~~L~~L~Ls~N~L~-~lp~-~~~ 200 (571)
T 3cvr_A 147 ADNNQLTM-LPE----LPTSLEVLSVRNNQLTF---------------LPE-L---PESLEALDVSTNLLE-SLPA-VPV 200 (571)
T ss_dssp CCSSCCSC-CCC----CCTTCCEEECCSSCCSC---------------CCC-C---CTTCCEEECCSSCCS-SCCC-CC-
T ss_pred CCCCccCc-CCC----cCCCcCEEECCCCCCCC---------------cch-h---hCCCCEEECcCCCCC-chhh-HHH
Confidence 99999994 775 56788899888764110 011 1 168999999999999 7777 554
Q ss_pred CCCC-------CEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCC
Q 044710 161 FKSL-------KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 210 (331)
Q Consensus 161 l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 210 (331)
+| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77 99999999999 6888888899999999999999998888776643
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2.4e-19 Score=173.94 Aligned_cols=143 Identities=25% Similarity=0.301 Sum_probs=77.9
Q ss_pred chhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCcccc
Q 044710 40 FPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYN 119 (331)
Q Consensus 40 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 119 (331)
.+..|..++.|++|+|++|.+. .+|... ..+++|++|+|++|.++ .+|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~--~~l~~L~~L~Ls~N~l~-~lp~~~------------------------- 266 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANI--FKYDFLTRLYLNGNSLT-ELPAEI------------------------- 266 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGG--GGCCSCSCCBCTTSCCS-CCCGGG-------------------------
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhh--cCCCCCCEEEeeCCcCc-ccChhh-------------------------
Confidence 3445555666666666666654 344333 34556666666666665 555332
Q ss_pred ceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCC
Q 044710 120 ESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 199 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 199 (331)
..+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.++
T Consensus 267 ---------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 267 ---------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ---------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred ---------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 22455666666666666 55666666666666666666665 55655666666666666666666
Q ss_pred CCCcccccCCCC-CCeEEcccCCCcccCCC
Q 044710 200 GRIPEQLLSVTA-LALLNLSYNRLWGRIPR 228 (331)
Q Consensus 200 ~~~~~~l~~l~~-L~~L~ls~N~lsg~ip~ 228 (331)
+.+|..+..+.. +..+++++|.++|.+|.
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 665555433211 11245555555555554
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=8.8e-20 Score=168.38 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=57.7
Q ss_pred cCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcccccCC-----cccccCCCCCcEEeCCCCcCCCC----Cccc
Q 044710 139 MFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI-----PVSFENMTALESLDLSFNKLDGR----IPEQ 205 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 205 (331)
.|+.|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 777777777777753 4666677777888888877776532 22223467777777777777653 4555
Q ss_pred ccCCCCCCeEEcccCCCc
Q 044710 206 LLSVTALALLNLSYNRLW 223 (331)
Q Consensus 206 l~~l~~L~~L~ls~N~ls 223 (331)
+..+++|++|++++|.++
T Consensus 280 l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHCTTCCEEECTTCCCH
T ss_pred HhhCCCcceEECCCCCCc
Confidence 666777777777777775
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=4.9e-19 Score=171.79 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=111.1
Q ss_pred cEEEccCCcCCC---------CCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCC
Q 044710 3 RSLDLNNNKLEG---------PLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPF 73 (331)
Q Consensus 3 ~~L~Ls~n~i~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 73 (331)
+.++|+.|.|.+ ..|..|..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l 269 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNL 269 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGG
T ss_pred hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh--hCC
Confidence 345555555443 45778999999999999999998 56666779999999999999998 677766 789
Q ss_pred CCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC
Q 044710 74 QALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE 153 (331)
Q Consensus 74 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 153 (331)
++|++|+|++|.++ .+|..+ . .+.+|++|+|++|.++ .
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~-~---------------------------------------~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAEL-G---------------------------------------SCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSG-G---------------------------------------GGTTCSEEECCSSCCC-C
T ss_pred CCCCEEeCcCCcCC-ccChhh-c---------------------------------------CCCCCCEEECCCCCCC-c
Confidence 99999999999999 778663 2 2667788888888887 7
Q ss_pred CchhhhCCCCCCEEEccCcccccCCcccccCCCC-CcEEeCCCCcCCCCCccc
Q 044710 154 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-LESLDLSFNKLDGRIPEQ 205 (331)
Q Consensus 154 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~ 205 (331)
+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 7888888888888889888888888777654322 223667777777666643
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.3e-17 Score=131.10 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=53.1
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCC-cccccCCCCCcEEeCCCCcCCCCCc---ccccCCCCCC
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIP---EQLLSVTALA 213 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~ 213 (331)
++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 34455555555555445555556666666666666666432 1556666777777777777765444 3566677777
Q ss_pred eEEcccCCCc
Q 044710 214 LLNLSYNRLW 223 (331)
Q Consensus 214 ~L~ls~N~ls 223 (331)
+|++++|.++
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 7777777665
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=3.5e-17 Score=130.06 Aligned_cols=134 Identities=18% Similarity=0.142 Sum_probs=113.4
Q ss_pred CCCCcEEeccCCcCc-cCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccc
Q 044710 23 CMKLEVVNVGNNMIS-DSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAM 101 (331)
Q Consensus 23 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 101 (331)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~~-------- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDML-------- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCCCHH--------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHHHHH--------
Confidence 478999999999998 67888889999999999999999865 333 77999999999999998655432
Q ss_pred ccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCC-chhhhCCCCCCEEEccCcccccCCc-
Q 044710 102 KNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEI-PEVLGNFKSLKVLNLSHNSLTGNIP- 179 (331)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p- 179 (331)
...+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+
T Consensus 91 --------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 138 (168)
T 2ell_A 91 --------------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138 (168)
T ss_dssp --------------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH
T ss_pred --------------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH
Confidence 133778999999999999532 2789999999999999999996655
Q ss_pred --ccccCCCCCcEEeCCCCcCCC
Q 044710 180 --VSFENMTALESLDLSFNKLDG 200 (331)
Q Consensus 180 --~~~~~l~~L~~L~Ls~N~l~~ 200 (331)
..+..+++|++|++++|.+..
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 139 RESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHhCccCcEecCCCCChhh
Confidence 488999999999999999874
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=9.1e-17 Score=130.63 Aligned_cols=111 Identities=27% Similarity=0.349 Sum_probs=78.6
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 217 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 217 (331)
..+++|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35577777777777 66777777788888888888887766677777788888888888887777777777778888888
Q ss_pred ccCCCcccCCCC-CCCCccccccccCCcCCcCC
Q 044710 218 SYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 218 s~N~lsg~ip~~-~~~~~~~~~~~~~n~~lc~~ 249 (331)
++|.+++..+.. ..+..+..+.+.+|++.|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 888877443322 23445555566666666643
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=129.61 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=104.1
Q ss_pred CeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCch
Q 044710 51 KILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHD 130 (331)
Q Consensus 51 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (331)
+++++++|+++ .+|..+ .++|++|++++|.++ .+|.. +
T Consensus 13 ~~l~~~~~~l~-~ip~~~----~~~l~~L~L~~n~i~-~ip~~-~----------------------------------- 50 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI----PRDVTELYLDGNQFT-LVPKE-L----------------------------------- 50 (193)
T ss_dssp TEEECTTSCCS-SCCSCC----CTTCCEEECCSSCCC-SCCGG-G-----------------------------------
T ss_pred CEEEcCCCCCC-cCCCCC----CCCCCEEECCCCcCc-hhHHH-h-----------------------------------
Confidence 56777777775 345443 357888888888887 56633 2
Q ss_pred hhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCC
Q 044710 131 FQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 210 (331)
Q Consensus 131 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 210 (331)
..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+..++
T Consensus 51 ----~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 51 ----SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp ----GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ----hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 2256778888999999877778899999999999999999988888899999999999999999977777888999
Q ss_pred CCCeEEcccCCCccc
Q 044710 211 ALALLNLSYNRLWGR 225 (331)
Q Consensus 211 ~L~~L~ls~N~lsg~ 225 (331)
+|+.|++++|.+.+.
T Consensus 127 ~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 127 ALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCEECS
T ss_pred cccEEEeCCCCeecC
Confidence 999999999999753
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.6e-16 Score=127.28 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=72.3
Q ss_pred hccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 137 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45567777777777755556677888888888888888877777788888899999999988876666678888899999
Q ss_pred cccCCCcccCC
Q 044710 217 LSYNRLWGRIP 227 (331)
Q Consensus 217 ls~N~lsg~ip 227 (331)
+++|.+++..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99998887665
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=3.8e-17 Score=127.17 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=50.2
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccC-CcccccCCCCCcEEeCCCCcCCCCCc---ccccCCCCCC
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGRIP---EQLLSVTALA 213 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~ 213 (331)
++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4455556666666555666666666666666666666642 23556666677777777776665544 3566667777
Q ss_pred eEEcc
Q 044710 214 LLNLS 218 (331)
Q Consensus 214 ~L~ls 218 (331)
+||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77665
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.4e-17 Score=126.29 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=108.0
Q ss_pred CCCCcEEeccCCcCc-cCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccc
Q 044710 23 CMKLEVVNVGNNMIS-DSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAM 101 (331)
Q Consensus 23 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 101 (331)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~~-------- 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEVL-------- 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCSCTHHH--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccchHHHH--------
Confidence 367999999999998 67888889999999999999999865 333 77899999999999998655532
Q ss_pred ccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCC-CchhhhCCCCCCEEEccCcccccCCc-
Q 044710 102 KNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTGNIP- 179 (331)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p- 179 (331)
...+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 84 --------------------------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 84 --------------------------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp --------------------------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH
T ss_pred --------------------------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH
Confidence 13367889999999999853 34789999999999999999997665
Q ss_pred --ccccCCCCCcEEeCCC
Q 044710 180 --VSFENMTALESLDLSF 195 (331)
Q Consensus 180 --~~~~~l~~L~~L~Ls~ 195 (331)
..+..+++|+.||+++
T Consensus 132 ~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 132 RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHCCCcccccCCC
Confidence 5788999999999874
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.7e-18 Score=163.14 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=126.7
Q ss_pred CCCCCchhhhCCCCCcEEe-ccCCcCccCchh-----hhcC--CCCCCeEEeecccccccCCCCCCCcCCCCccEEEccC
Q 044710 12 LEGPLPISLAKCMKLEVVN-VGNNMISDSFPC-----WLGS--LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSH 83 (331)
Q Consensus 12 i~~~~p~~~~~l~~L~~L~-L~~n~l~~~~p~-----~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 83 (331)
+.+.+|..+..+++|+.|+ ++.|.+.....- .+.. ...|++|+|++|++++ +|. + ..+++|++|++++
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSH 472 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCS
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCc
Confidence 5677888999999999998 666654321100 1111 1259999999999987 564 4 7899999999999
Q ss_pred CCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCC
Q 044710 84 NEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKS 163 (331)
Q Consensus 84 n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~ 163 (331)
|.++ .+|..+ ..+++|+.|+|++|.+++ +| .++.+++
T Consensus 473 N~l~-~lp~~~----------------------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~ 509 (567)
T 1dce_A 473 NRLR-ALPPAL----------------------------------------AALRCLEVLQASDNALEN-VD-GVANLPR 509 (567)
T ss_dssp SCCC-CCCGGG----------------------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred cccc-ccchhh----------------------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCC
Confidence 9999 777653 226788999999999995 78 8999999
Q ss_pred CCEEEccCcccccCC-cccccCCCCCcEEeCCCCcCCCCCcc---cccCCCCCCeEEc
Q 044710 164 LKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPE---QLLSVTALALLNL 217 (331)
Q Consensus 164 L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~l 217 (331)
|+.|+|++|++++.+ |..++.+++|+.|+|++|.+++.+|. .+..+++|+.||+
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999877 99999999999999999999977553 2345889999875
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=5.7e-16 Score=124.08 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=83.8
Q ss_pred CcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccccccc
Q 044710 26 LEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVD 105 (331)
Q Consensus 26 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~ 105 (331)
.+.+++++|.++. +|..+ .++|++|++++|++++..+..+ ..+++|++|++++|.++ .+|...+..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~-------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQ-SLPDGVFDK-------- 74 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCC-CCCTTTTTT--------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcce-EeChhHccC--------
Confidence 3455666666553 33222 2456666666666654333333 45566666666666666 333332222
Q ss_pred ccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCC
Q 044710 106 EQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 185 (331)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 185 (331)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus 75 -------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 123 (177)
T 2o6r_A 75 -------------------------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123 (177)
T ss_dssp -------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC
Confidence 4455667777777775555667778888888888888886666667778
Q ss_pred CCCcEEeCCCCcCCCCCc
Q 044710 186 TALESLDLSFNKLDGRIP 203 (331)
Q Consensus 186 ~~L~~L~Ls~N~l~~~~~ 203 (331)
++|++|++++|.+++..|
T Consensus 124 ~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 124 TSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred cccCEEEecCCCeeccCc
Confidence 888888888888876554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.9e-16 Score=138.53 Aligned_cols=171 Identities=15% Similarity=0.060 Sum_probs=117.4
Q ss_pred CCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCcccccccccccccc-----ccC-Cccc--
Q 044710 47 LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE-----YMG-GAFY-- 118 (331)
Q Consensus 47 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~-----~~~-~~~~-- 118 (331)
+++|+.|+|.+ .++..-...+ .++++|+++++++|.+. .++...|.++.++..+....... .+. ..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF--~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAF--KGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTT--TTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHh--hcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77888888877 6654333333 67778888888888777 66666677766666555433111 000 0010
Q ss_pred ----------------------------cceeEEEEcC--chh-hHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEE
Q 044710 119 ----------------------------NESITVVMKG--HDF-QLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVL 167 (331)
Q Consensus 119 ----------------------------~~~~~~~~~~--~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 167 (331)
...+...... ... .+...+++|+.+++++|.++...+..|..+++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 0000011100 011 111237899999999999995556789999999999
Q ss_pred EccCcccccCCcccccCCCCCc-EEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 168 NLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 168 ~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+++.| +....+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 99998 7767778999999999 999998 787677789999999999999999987
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=1.7e-18 Score=141.58 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=115.4
Q ss_pred hhCCCCCcEEeccCCcCccCchh------hhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCcc
Q 044710 20 LAKCMKLEVVNVGNNMISDSFPC------WLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTR 93 (331)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 93 (331)
+.....++.++++.+.+++..|. .+..+++|++|++++|++.+ +| .+ ..+++|++|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccch
Confidence 55566777778888888777665 78888888899988888876 45 33 67888888888888887 55532
Q ss_pred ccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcc
Q 044710 94 IFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS 173 (331)
Q Consensus 94 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 173 (331)
+ ..+++|+.|++++|.+++ +| .+..+++|+.|++++|+
T Consensus 89 ~----------------------------------------~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 89 D----------------------------------------AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp H----------------------------------------HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred h----------------------------------------hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 1 235778888888888884 55 57778888888888888
Q ss_pred cccCCc-ccccCCCCCcEEeCCCCcCCCCCcc----------cccCCCCCCeEEcccCCCc
Q 044710 174 LTGNIP-VSFENMTALESLDLSFNKLDGRIPE----------QLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 174 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~l~~L~~L~ls~N~ls 223 (331)
+++..+ ..+..+++|++|++++|.+++.+|. .+..+++|+.|| +|.++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 885332 4678888888888888888766554 267788888887 66665
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=2e-15 Score=120.10 Aligned_cols=110 Identities=22% Similarity=0.207 Sum_probs=97.6
Q ss_pred CccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCC
Q 044710 75 ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEI 154 (331)
Q Consensus 75 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 154 (331)
..+.+++++|.++ .+|..+ ...+++|++++|.+++..
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~------------------------------------------~~~l~~L~L~~N~i~~~~ 46 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI------------------------------------------PTTTQVLYLYDNQITKLE 46 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC------------------------------------------CTTCSEEECCSSCCCCCC
T ss_pred CCCEEEeCCCCcC-ccCccC------------------------------------------CCCCcEEEcCCCcCCccC
Confidence 4578999999998 677653 356789999999999888
Q ss_pred chhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccCC
Q 044710 155 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 227 (331)
Q Consensus 155 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~ip 227 (331)
|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|++++|.+++..+
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999999999999998877888999999999999999998777789999999999999999986654
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=7.7e-16 Score=135.81 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=142.9
Q ss_pred CccEEEccCCcCC--------------------CCCchhhhC--------CCCCcEEeccCCcCccCchhhhcCCCCCCe
Q 044710 1 NLRSLDLNNNKLE--------------------GPLPISLAK--------CMKLEVVNVGNNMISDSFPCWLGSLPELKI 52 (331)
Q Consensus 1 ~L~~L~Ls~n~i~--------------------~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 52 (331)
+|+.|||++|+|. ...+.+|.+ +++|+.|+|.+ .++.+.+.+|.++++|++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 5899999999988 334457888 99999999999 888777889999999999
Q ss_pred EEeecccccccCCCCCCCcCCCCccEEEccCCCC---CCCCCccccCC--------------------------------
Q 044710 53 LELRSNRFYGPLCKSNITFPFQALQIIDLSHNEF---TGFLPTRIFPG-------------------------------- 97 (331)
Q Consensus 53 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l---~~~~p~~~~~~-------------------------------- 97 (331)
|++++|.+....+..+ ..+.++.++....+.. ...+....|.+
T Consensus 129 l~l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 129 CQIRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp EEBCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred EEcCCCCccccchhhh--cCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999998865444444 5666677766554211 00111111111
Q ss_pred ------------------cccccccccccc-ccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhh
Q 044710 98 ------------------MEAMKNVDEQRR-LEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVL 158 (331)
Q Consensus 98 ------------------l~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 158 (331)
+++|+.+++..+ ... .....+..+.+|+.+++.+| ++..-+.+|
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~----------------I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT----------------IPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE----------------ECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce----------------ecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 334444444332 111 12223344788999999998 775666789
Q ss_pred hCCCCCC-EEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 044710 159 GNFKSLK-VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 217 (331)
Q Consensus 159 ~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 217 (331)
.++++|+ .+++.. .++...+.+|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999 999998 787677799999999999999999999888889999999999864
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.2e-15 Score=122.06 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcc--cccCCCCCcEEeCCCCcCCCCCcc----cccCCCCC
Q 044710 139 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV--SFENMTALESLDLSFNKLDGRIPE----QLLSVTAL 212 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~L 212 (331)
+|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|.++. +|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence 3344444444444322233355555555555555554 3333 45555666666666666652 333 25566666
Q ss_pred CeEEcccCCCc
Q 044710 213 ALLNLSYNRLW 223 (331)
Q Consensus 213 ~~L~ls~N~ls 223 (331)
+.||+++|.+.
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 66666666554
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=4.5e-18 Score=139.02 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=121.2
Q ss_pred ccEEEccCCcCCCCCch------hhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCC
Q 044710 2 LRSLDLNNNKLEGPLPI------SLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQA 75 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 75 (331)
++.++++.+.+++..|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|... ..+++
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~ 94 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADT 94 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHH
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCc
Confidence 45566777777776665 99999999999999999997 56 8899999999999999998 455543 55689
Q ss_pred ccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCc
Q 044710 76 LQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIP 155 (331)
Q Consensus 76 L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 155 (331)
|++|++++|.+++ +| . ...+++|+.|++++|.+++..+
T Consensus 95 L~~L~L~~N~l~~-l~-~----------------------------------------~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-G----------------------------------------IEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp CSEEEEEEEECCC-HH-H----------------------------------------HHHHHHSSEEEESEEECCCHHH
T ss_pred CCEEECcCCcCCc-CC-c----------------------------------------cccCCCCCEEECCCCcCCchhH
Confidence 9999999999984 33 1 1347889999999999984322
Q ss_pred -hhhhCCCCCCEEEccCcccccCCccc----------ccCCCCCcEEeCCCCcCCC
Q 044710 156 -EVLGNFKSLKVLNLSHNSLTGNIPVS----------FENMTALESLDLSFNKLDG 200 (331)
Q Consensus 156 -~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~ 200 (331)
..+..+++|++|++++|.+.+.+|.. +..+++|+.|| +|.++.
T Consensus 133 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 47899999999999999998776653 78899999998 666654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=7.6e-15 Score=117.16 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=95.2
Q ss_pred ccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCc
Q 044710 76 LQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIP 155 (331)
Q Consensus 76 L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 155 (331)
-+.+++++|.++ .+|..+ ...|+.|++++|.+++..|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~------------------------------------------~~~L~~L~Ls~N~l~~~~~ 50 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI------------------------------------------PTDKQRLWLNNNQITKLEP 50 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC------------------------------------------CTTCSEEECCSSCCCCCCT
T ss_pred CcEEEeCCCCCC-ccCCCc------------------------------------------CCCCcEEEeCCCCccccCH
Confidence 478999999997 777653 3567899999999998889
Q ss_pred hhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCcccC
Q 044710 156 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 226 (331)
Q Consensus 156 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~lsg~i 226 (331)
..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|++++|.++...
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999999999999999999776677899999999999999999777777999999999999999998543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.8e-15 Score=121.13 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=108.6
Q ss_pred hhhCCCCCcEEeccCCcCccCchhhhcCC-CCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCC
Q 044710 19 SLAKCMKLEVVNVGNNMISDSFPCWLGSL-PELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPG 97 (331)
Q Consensus 19 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 97 (331)
.+.++.+|+.|++++|.++. +|. +..+ ++|++|++++|.+++. ..+ ..+++|++|++++|.++ .+|..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~-~~~~~~~-- 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC-RIGEGLD-- 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC-EECSCHH--
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc-ccCcchh--
Confidence 46778899999999999985 454 4444 4999999999999874 334 77899999999999998 4554332
Q ss_pred ccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCch--hhhCCCCCCEEEccCcccc
Q 044710 98 MEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPE--VLGNFKSLKVLNLSHNSLT 175 (331)
Q Consensus 98 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~ 175 (331)
..+++|+.|++++|.++ .+|. .+..+++|+.|++++|.++
T Consensus 85 -------------------------------------~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 85 -------------------------------------QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -------------------------------------HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -------------------------------------hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 33678899999999997 6676 7889999999999999998
Q ss_pred cCCcc----cccCCCCCcEEeCCCCcCCC
Q 044710 176 GNIPV----SFENMTALESLDLSFNKLDG 200 (331)
Q Consensus 176 ~~~p~----~~~~l~~L~~L~Ls~N~l~~ 200 (331)
.+|. .+..+++|+.||+++|.+..
T Consensus 127 -~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 127 -NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp -GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred -CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 4565 48899999999999998753
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1.8e-16 Score=150.73 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=26.6
Q ss_pred CCCCcEEeCCCCcCCCC-CcccccCCCCCCeEEcccCCCcc
Q 044710 185 MTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 185 l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 56677777777776652 34445667777777777777654
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=5.3e-17 Score=154.39 Aligned_cols=221 Identities=12% Similarity=0.053 Sum_probs=135.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCch-hhhcCCCCCCeEEeecccccc-cCCCCCCCcCCCCccE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFP-CWLGSLPELKILELRSNRFYG-PLCKSNITFPFQALQI 78 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~ 78 (331)
+|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|++++ .+.. .++... ..+++|++
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~--~~~~~L~~ 346 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLA--QYCKQLKR 346 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHH--HHCTTCCE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHH--HhCCCCCE
Confidence 366777776543 3567677777788888888887664433 3456777888887773 3322 111111 34566777
Q ss_pred EEccC-----------CCCCCCCCccccCCccccccccccccccc------cCC-ccccceeEEEE-------cCc----
Q 044710 79 IDLSH-----------NEFTGFLPTRIFPGMEAMKNVDEQRRLEY------MGG-AFYNESITVVM-------KGH---- 129 (331)
Q Consensus 79 L~ls~-----------n~l~~~~p~~~~~~l~~L~~l~l~~~~~~------~~~-~~~~~~~~~~~-------~~~---- 129 (331)
|++++ |.+++.....+...+++|+.|++..+... +.. ......+.+.. ...
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 77772 44443222222344566666665322100 000 00122222221 110
Q ss_pred -hhhHHHHhccCCEEEcCCCc--CCCCCchhhh-CCCCCCEEEccCccccc-CCcccccCCCCCcEEeCCCCcCCCC-Cc
Q 044710 130 -DFQLQKILVMFRAMDFSSNR--FHGEIPEVLG-NFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDGR-IP 203 (331)
Q Consensus 130 -~~~~~~~~~~L~~L~ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~~ 203 (331)
.......+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 11224558899999997543 6665555554 48999999999999986 3455567899999999999998755 34
Q ss_pred ccccCCCCCCeEEcccCCCccc
Q 044710 204 EQLLSVTALALLNLSYNRLWGR 225 (331)
Q Consensus 204 ~~l~~l~~L~~L~ls~N~lsg~ 225 (331)
.....+++|++|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 4556789999999999998853
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=9.7e-14 Score=110.27 Aligned_cols=108 Identities=23% Similarity=0.226 Sum_probs=92.3
Q ss_pred cCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 044710 139 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 218 (331)
Q Consensus 139 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls 218 (331)
..+.+++++|.++ .+|..+ .++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999 678765 3899999999999998889999999999999999999998888788999999999999
Q ss_pred cCCCcccCCC-CCCCCccccccccCCcCCcCC
Q 044710 219 YNRLWGRIPR-GNQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 219 ~N~lsg~ip~-~~~~~~~~~~~~~~n~~lc~~ 249 (331)
+|.|++..|. ...+..+..+.+.+|++-|.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999976554 234566777778888877764
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2e-13 Score=108.88 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=90.2
Q ss_pred CCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEccc
Q 044710 140 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 219 (331)
Q Consensus 140 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~ 219 (331)
-+.+++++|.++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 7887664 8999999999999988899999999999999999999987777789999999999999
Q ss_pred CCCcccCCC-CCCCCccccccccCCcCCcCC
Q 044710 220 NRLWGRIPR-GNQFNTFENDSYIGNIHLCGE 249 (331)
Q Consensus 220 N~lsg~ip~-~~~~~~~~~~~~~~n~~lc~~ 249 (331)
|.|++..|. ...+..+..+.+.+|++-|.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999965554 234556677777888776653
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=7.8e-16 Score=137.74 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=114.3
Q ss_pred CCCcEEeccCCcCccCchhhhcC-----CCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCc
Q 044710 24 MKLEVVNVGNNMISDSFPCWLGS-----LPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGM 98 (331)
Q Consensus 24 ~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l 98 (331)
+.|+.|+|++|.++......+.. .++|++|+|++|.++......+ ...+.+|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~L~--- 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLR--- 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHHHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHHHH---
Confidence 57888888888887544433332 2688888888888754221111 12356788888888887632111100
Q ss_pred cccccccccccccccCCccccceeEEEEcCchhhHH-HHhccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcc
Q 044710 99 EAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQ-KILVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNS 173 (331)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~ 173 (331)
... ...+.|++|+|++|.+++. ++..+...++|++|+|++|.
T Consensus 148 ---------------------------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 148 ---------------------------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp ---------------------------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred ---------------------------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 000 1146789999999998752 45566789999999999999
Q ss_pred cccCC----cccccCCCCCcEEeCCCCcCCCC----CcccccCCCCCCeEEcccCCCcc
Q 044710 174 LTGNI----PVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRLWG 224 (331)
Q Consensus 174 l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~ls~N~lsg 224 (331)
+++.. +..+...++|++|+|++|.|++. ++..+..+++|++||+++|.|+.
T Consensus 195 l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 98543 55667788999999999999864 33445667899999999999873
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1e-15 Score=136.93 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=126.3
Q ss_pred CccEEEccCCcCCCCCchhhhCC-----CCCcEEeccCCcCccCchhhhc-CCCCCCeEEeecccccccCCCCCC--C-c
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKC-----MKLEVVNVGNNMISDSFPCWLG-SLPELKILELRSNRFYGPLCKSNI--T-F 71 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~--~-~ 71 (331)
+|+.|+|++|.|+......+..+ .+|++|+|++|.++......+. .+++|++|+|++|.++......+. . .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 47899999999986555555443 6999999999999755433333 467899999999998642211110 0 1
Q ss_pred CCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCC
Q 044710 72 PFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFH 151 (331)
Q Consensus 72 ~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 151 (331)
..++|++|++++|.++..-...+ .......+.|++|+|++|.++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l------------------------------------~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVL------------------------------------MEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHH------------------------------------HHHHHTCSSCCEEECTTSSCH
T ss_pred cCCccceeeCCCCCCChHHHHHH------------------------------------HHHHhcCCCcCEEeCCCCCCC
Confidence 35789999999999873111000 011122567999999999988
Q ss_pred CC----CchhhhCCCCCCEEEccCcccccC----CcccccCCCCCcEEeCCCCcCCCCCcccccCCCC-----CCeEE--
Q 044710 152 GE----IPEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA-----LALLN-- 216 (331)
Q Consensus 152 ~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-----L~~L~-- 216 (331)
+. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.|++.....+..+.. |+.+.
T Consensus 197 ~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~l 276 (372)
T 3un9_A 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276 (372)
T ss_dssp HHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCC
T ss_pred cHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhh
Confidence 53 356677889999999999999864 3344556789999999999998765544433321 45555
Q ss_pred cccCCCc
Q 044710 217 LSYNRLW 223 (331)
Q Consensus 217 ls~N~ls 223 (331)
+..|.++
T Consensus 277 l~~~~~~ 283 (372)
T 3un9_A 277 TEGTAVS 283 (372)
T ss_dssp C----CH
T ss_pred hcCCccC
Confidence 4555543
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=1.1e-15 Score=145.26 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=64.3
Q ss_pred HHhccCCEEEcCCCcCCCCCchhhhC-CCCCCEEEccCcccccCCcccc-cCCCCCcEEeCCCCcCCCCCcc-cccCCCC
Q 044710 135 KILVMFRAMDFSSNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPE-QLLSVTA 211 (331)
Q Consensus 135 ~~~~~L~~L~ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~ 211 (331)
..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 4467888888876 666555555555 7888899998888876555544 5678889999998888654333 3445788
Q ss_pred CCeEEcccCCCc
Q 044710 212 LALLNLSYNRLW 223 (331)
Q Consensus 212 L~~L~ls~N~ls 223 (331)
|+.|++++|.++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 889999888875
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.9e-12 Score=116.92 Aligned_cols=193 Identities=9% Similarity=0.091 Sum_probs=129.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEE
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIID 80 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 80 (331)
+|+.+.+..+ ++.....+|.++ +|+.+.+.+ .++.+.+.+|.++++|+.+++.+|+++......+ . ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEE
Confidence 4678888766 776677889885 799999986 6776777899999999999999998875433333 3 68999999
Q ss_pred ccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhC
Q 044710 81 LSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGN 160 (331)
Q Consensus 81 ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 160 (331)
+.++ +. .++...|.++.+|+.+.+..+...++...+. -..|+.+.+ .+.++..-+.+|..
T Consensus 210 lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~-----------------~~~L~~i~l-p~~i~~I~~~aF~~ 269 (401)
T 4fdw_A 210 LPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFR-----------------ESGITTVKL-PNGVTNIASRAFYY 269 (401)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTT-----------------TCCCSEEEE-ETTCCEECTTTTTT
T ss_pred eCCc-hh-eehhhHhhCCCCCCEEecCCCccCccccccc-----------------cCCccEEEe-CCCccEEChhHhhC
Confidence 9854 66 7888889999999999988766544432111 134555555 23344333455666
Q ss_pred CCCCCEEEccCcccc-----cCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccC
Q 044710 161 FKSLKVLNLSHNSLT-----GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 161 l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
+++|+.+++.+|.+. ...+.+|..+++|+.++|. +.++......|.++++|+.+++..|
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 666666666665543 2334556666666666666 3355444455666666666666443
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=4.7e-12 Score=114.29 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=118.6
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEcc
Q 044710 3 RSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLS 82 (331)
Q Consensus 3 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 82 (331)
+.+.+.+ .++.+...+|.++ +|+.+.+.++ ++.+...+|.++ +|+.+.+.+ .+...-... |..+.+|+.++++
T Consensus 116 ~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a--F~~c~~L~~l~l~ 188 (401)
T 4fdw_A 116 NEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI--FYYCYNLKKADLS 188 (401)
T ss_dssp SEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST--TTTCTTCCEEECT
T ss_pred cEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH--hhCcccCCeeecC
Confidence 3344432 3444455677764 6888887766 665566677774 588887775 444322233 3677788888888
Q ss_pred CCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCC
Q 044710 83 HNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFK 162 (331)
Q Consensus 83 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~ 162 (331)
+|.++ .++...|. ..+|+.+.+..+...++.. .+..+.+|+.+++..+ ++..-..+|.. .
T Consensus 189 ~n~l~-~I~~~aF~-~~~L~~l~lp~~l~~I~~~----------------aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 189 KTKIT-KLPASTFV-YAGIEEVLLPVTLKEIGSQ----------------AFLKTSQLKTIEIPEN-VSTIGQEAFRE-S 248 (401)
T ss_dssp TSCCS-EECTTTTT-TCCCSEEECCTTCCEECTT----------------TTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred CCcce-EechhhEe-ecccCEEEeCCchheehhh----------------HhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence 87777 67766666 4677777666554333221 1123567777777764 44333445555 6
Q ss_pred CCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCC-----CCCcccccCCCCCCeEEccc
Q 044710 163 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-----GRIPEQLLSVTALALLNLSY 219 (331)
Q Consensus 163 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~l~~L~~L~ls~ 219 (331)
+|+.+.+ .+.++.....+|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 7888877 34455455677778888888888777664 23455677788888888774
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=8.4e-13 Score=117.09 Aligned_cols=85 Identities=22% Similarity=0.219 Sum_probs=40.0
Q ss_pred ccCCEEEcCC-CcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEE
Q 044710 138 VMFRAMDFSS-NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 216 (331)
Q Consensus 138 ~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 216 (331)
.+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3444455543 444444444444455555555555555544444444455555555555555443333333333 45555
Q ss_pred cccCCCc
Q 044710 217 LSYNRLW 223 (331)
Q Consensus 217 ls~N~ls 223 (331)
+.+|.+.
T Consensus 110 l~~N~~~ 116 (347)
T 2ifg_A 110 LSGNPLH 116 (347)
T ss_dssp CCSSCCC
T ss_pred eeCCCcc
Confidence 5555444
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.9e-14 Score=136.76 Aligned_cols=222 Identities=12% Similarity=0.052 Sum_probs=123.6
Q ss_pred CccEEEccCCcCCCCCchhhh-CCCCCcEEeccCC-cCccC-chhhhcCCCCCCeEEeecccccccCCCCC--CCcCCCC
Q 044710 1 NLRSLDLNNNKLEGPLPISLA-KCMKLEVVNVGNN-MISDS-FPCWLGSLPELKILELRSNRFYGPLCKSN--ITFPFQA 75 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~ 75 (331)
+|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+ ....+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 478888888888876666665 6888888888888 45432 44445578889999998888765332221 1135678
Q ss_pred ccEEEccCCC--CCCCCCccccCCccccccccccccccc--cC----CccccceeE------------------------
Q 044710 76 LQIIDLSHNE--FTGFLPTRIFPGMEAMKNVDEQRRLEY--MG----GAFYNESIT------------------------ 123 (331)
Q Consensus 76 L~~L~ls~n~--l~~~~p~~~~~~l~~L~~l~l~~~~~~--~~----~~~~~~~~~------------------------ 123 (331)
|++|++++|. +.......+...+++|+.|++..+... +. .......+.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence 8888888886 221111122334577777776654100 00 000000000
Q ss_pred ----E-EEcC----chhhHHHHhccCCEEEcCCCcCCCCCc-hhhhCCCCCCEEEccCcccccC-CcccccCCCCCcEEe
Q 044710 124 ----V-VMKG----HDFQLQKILVMFRAMDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLD 192 (331)
Q Consensus 124 ----~-~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 192 (331)
+ .... ........+++|+.|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|++|+
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 0 0000 111223357889999999988764332 33567888888888877 4322 222223466677776
Q ss_pred CC---------CCcCCCCCcccc-cCCCCCCeEEcccCCCc
Q 044710 193 LS---------FNKLDGRIPEQL-LSVTALALLNLSYNRLW 223 (331)
Q Consensus 193 Ls---------~N~l~~~~~~~l-~~l~~L~~L~ls~N~ls 223 (331)
++ .+.+++.....+ ..+++|+.|+++.|.++
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 62 234443222222 23555555555555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.4e-12 Score=114.09 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=40.0
Q ss_pred EEcCCC-cCCCCCchhhhCCCCCCEEEccC-cccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccC
Q 044710 143 MDFSSN-RFHGEIPEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 143 L~ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 3444 45555555555553 5555444444555555555555555555544445555555555555555
Q ss_pred CCcc
Q 044710 221 RLWG 224 (331)
Q Consensus 221 ~lsg 224 (331)
+|++
T Consensus 91 ~l~~ 94 (347)
T 2ifg_A 91 ALES 94 (347)
T ss_dssp CCSC
T ss_pred ccce
Confidence 5553
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=2e-10 Score=101.93 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=104.6
Q ss_pred ccEEEccCCcCCC-CC-------chhhhCCCCCcEEeccCCcCc---------cCchhhhcCCCCCCeEEeecccccccC
Q 044710 2 LRSLDLNNNKLEG-PL-------PISLAKCMKLEVVNVGNNMIS---------DSFPCWLGSLPELKILELRSNRFYGPL 64 (331)
Q Consensus 2 L~~L~Ls~n~i~~-~~-------p~~~~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~ 64 (331)
++.|.+....+.+ .. ..++..+++|+.|.+.++... +.+...+..+|+|+.|.|++|.-. .+
T Consensus 109 v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l 187 (362)
T 2ra8_A 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SI 187 (362)
T ss_dssp CSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BC
T ss_pred cceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-ee
Confidence 4567777665542 21 334566788999988765331 234556677889999999877311 12
Q ss_pred CCCCCCcCCCCccEEEccCCCCCCCCCcccc-CCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEE
Q 044710 65 CKSNITFPFQALQIIDLSHNEFTGFLPTRIF-PGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAM 143 (331)
Q Consensus 65 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 143 (331)
+. + .+++|++|++..+.++......+. .. +++|+.|
T Consensus 188 ~~-~---~~~~L~~L~L~~~~l~~~~l~~l~~~~---------------------------------------lp~L~~L 224 (362)
T 2ra8_A 188 GK-K---PRPNLKSLEIISGGLPDSVVEDILGSD---------------------------------------LPNLEKL 224 (362)
T ss_dssp CS-C---BCTTCSEEEEECSBCCHHHHHHHHHSB---------------------------------------CTTCCEE
T ss_pred cc-c---cCCCCcEEEEecCCCChHHHHHHHHcc---------------------------------------CCCCcEE
Confidence 22 2 378899999988776522111110 12 4556666
Q ss_pred EcCC--CcCCCC-----Cchhh--hCCCCCCEEEccCcccccCCccccc---CCCCCcEEeCCCCcCCCC----Cccccc
Q 044710 144 DFSS--NRFHGE-----IPEVL--GNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDGR----IPEQLL 207 (331)
Q Consensus 144 ~ls~--n~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~~~~l~ 207 (331)
+|+. |...+. +...+ ..+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+.
T Consensus 225 ~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp EEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred EEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 6542 111111 11122 2467888888888877654333332 467788888888887754 233334
Q ss_pred CCCCCCeEEcccCCCc
Q 044710 208 SVTALALLNLSYNRLW 223 (331)
Q Consensus 208 ~l~~L~~L~ls~N~ls 223 (331)
.+++|+.|++++|.++
T Consensus 305 ~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHTTCSEEECCSBBCC
T ss_pred cCCcceEEECCCCcCC
Confidence 5678888888888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.4e-10 Score=102.89 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=117.7
Q ss_pred CccEEEccCCcCC---------CCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCc
Q 044710 1 NLRSLDLNNNKLE---------GPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITF 71 (331)
Q Consensus 1 ~L~~L~Ls~n~i~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 71 (331)
+|+.|.+..+... +.++..+..+++|+.|+|++|.-. .++. +. +++|++|+|..+.+.......+...
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 5788888765331 235667788999999999988411 2333 33 7899999999988754222222113
Q ss_pred CCCCccEEEccC--CCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCc
Q 044710 72 PFQALQIIDLSH--NEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNR 149 (331)
Q Consensus 72 ~l~~L~~L~ls~--n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 149 (331)
.+++|++|+|+. |...+.. ....+..+-. ...+++|+.|++++|.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~------~~~~l~~~l~---------------------------~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDG------DMNVFRPLFS---------------------------KDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCS------CGGGTGGGSC---------------------------TTTCTTCCEEEEESCT
T ss_pred cCCCCcEEEEeccccccccch------hHHHHHHHHh---------------------------cCCCCCcCEEeCCCCC
Confidence 589999999863 2211110 0111111000 0125788999999998
Q ss_pred CCCCCchhhh---CCCCCCEEEccCcccccCC----cccccCCCCCcEEeCCCCcCCCCCcccccC-CCCCCeEEcccCC
Q 044710 150 FHGEIPEVLG---NFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYNR 221 (331)
Q Consensus 150 l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~ls~N~ 221 (331)
+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.++......+.. + ...++++++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8755444443 5789999999999998643 333455789999999999988654444443 2 3567887776
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.6e-08 Score=88.76 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=102.5
Q ss_pred chhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCC----------------------
Q 044710 17 PISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQ---------------------- 74 (331)
Q Consensus 17 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~---------------------- 74 (331)
..+|.++.+|+.+.+.++. .......|.++.+|+.+++..+ +.. ++. .++..+.
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~-~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI-IRD-YCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE-ECT-TTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE-eCc-hhhccccccceeecCCCceEeehhhcccC
Confidence 4567777777777776543 2244556666777777766554 211 111 1113333
Q ss_pred CccEEEccCCCCCCCCCccccCCccccccccccccccccCCc-cc----cceeEEEEcCchhhHHHHhccCCEEEcCCCc
Q 044710 75 ALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGA-FY----NESITVVMKGHDFQLQKILVMFRAMDFSSNR 149 (331)
Q Consensus 75 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 149 (331)
+|+.+.+..+ ++ .+....|..+..++.+.+..+...+... +. ...............+..+.+|+.+.+..+
T Consensus 231 ~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCC-ce-ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 4444444322 12 2333445555555555544433222211 10 000000000011112233566777777544
Q ss_pred CCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccC
Q 044710 150 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 150 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
++..-..+|.++.+|+.+++..+ ++.....+|.++++|+.+++..| ++.....+|.++++|+.+++..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44334456777788888887644 55445567777888888888766 65555567778888888877654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=2.1e-09 Score=86.31 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=37.2
Q ss_pred hhCCCCCCEEEccCcccccC----CcccccCCCCCcEEeC--CCCcCCCC----CcccccCCCCCCeEEcccCCCc
Q 044710 158 LGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDL--SFNKLDGR----IPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 158 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+...+.|++|+|++|.|.+. +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34445556666666655532 2344455566666666 56666543 2334455566777777777664
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=6.4e-09 Score=83.40 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=39.8
Q ss_pred ccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEc--cCcccccCC----cccccCCCCCcEEeCCCCcCC
Q 044710 138 VMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNL--SHNSLTGNI----PVSFENMTALESLDLSFNKLD 199 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 199 (331)
+.|++|+|++|.+++. +...+...+.|++|+| ++|.+.... ...+...++|++|+|++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566677777766643 3445566677777777 677776542 234445577888888887764
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=4.9e-08 Score=82.42 Aligned_cols=67 Identities=30% Similarity=0.315 Sum_probs=42.2
Q ss_pred hCCCCCCEEEccCccccc--CCcccccCCCCCcEEeCCCCcCCCCCcccccCCC--CCCeEEcccCCCcccCC
Q 044710 159 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSYNRLWGRIP 227 (331)
Q Consensus 159 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~ls~N~lsg~ip 227 (331)
..+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|++|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456677777777777765 3345556667777777777777654 2233333 67777777777776555
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=5.4e-07 Score=81.00 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=62.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccc-------cc------cCC--
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRF-------YG------PLC-- 65 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------~~------~~~-- 65 (331)
+|+.+.+.. .++.+...+|.+|.+|+.+++.++ ++.....+|.++.+|+.+.+..+-- .+ ..+
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~ 149 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEG 149 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcc
Confidence 356666653 355455567777777777777654 4434455666666666655543210 00 000
Q ss_pred ----CCCCCcCCCCccEEEccCCCCCCCCCccccCCcccccccccccccc
Q 044710 66 ----KSNITFPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLE 111 (331)
Q Consensus 66 ----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~ 111 (331)
...+|..+.+|+.+.+.++. . .++...|.++.+|+.+.+..+..
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~~~ 197 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRNLK 197 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCCce
Confidence 11234667888888887553 3 56666788888888777765543
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=1e-06 Score=79.20 Aligned_cols=81 Identities=11% Similarity=0.152 Sum_probs=43.9
Q ss_pred HhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeE
Q 044710 136 ILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 215 (331)
Q Consensus 136 ~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 215 (331)
.+..|+.+.+..+... .-..+|..++.|+.+.+. +.++.....+|.++.+|+.++|..+ ++.....+|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3556666666544322 333455566666666664 3344334455666666666666543 443344456666666666
Q ss_pred Eccc
Q 044710 216 NLSY 219 (331)
Q Consensus 216 ~ls~ 219 (331)
.+..
T Consensus 340 ~ip~ 343 (394)
T 4gt6_A 340 AIPS 343 (394)
T ss_dssp EECT
T ss_pred EECc
Confidence 6643
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=3.7e-08 Score=83.17 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=64.0
Q ss_pred HhccCCEEEcCCCcCCC--CCchhhhCCCCCCEEEccCcccccCCcccccCCC--CCcEEeCCCCcCCCCCcc-------
Q 044710 136 ILVMFRAMDFSSNRFHG--EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT--ALESLDLSFNKLDGRIPE------- 204 (331)
Q Consensus 136 ~~~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~------- 204 (331)
.++.|+.|+|++|.+++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46799999999999997 4567788999999999999999965 2344444 899999999999876652
Q ss_pred cccCCCCCCeEE
Q 044710 205 QLLSVTALALLN 216 (331)
Q Consensus 205 ~l~~l~~L~~L~ 216 (331)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 367788898876
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=3.8e-07 Score=71.63 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=50.6
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCcEEeccCCc-CccCchhhhcCC----CCCCeEEeeccc-ccccCCCCCCCcCCCC
Q 044710 2 LRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNM-ISDSFPCWLGSL----PELKILELRSNR-FYGPLCKSNITFPFQA 75 (331)
Q Consensus 2 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~l~~ 75 (331)
|+.||++++.|+..--..+.++++|+.|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+ ..+++
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~~~ 140 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHFRN 140 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGCTT
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcCCC
Confidence 6777777777776555566777777777777774 655444445543 367777777764 443111112 34677
Q ss_pred ccEEEccCCC
Q 044710 76 LQIIDLSHNE 85 (331)
Q Consensus 76 L~~L~ls~n~ 85 (331)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=2.2e-07 Score=72.97 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=70.3
Q ss_pred ccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCc-ccccCCcccccCC----CCCcEEeCCCCc-CCCCCcccccCCCC
Q 044710 138 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN-SLTGNIPVSFENM----TALESLDLSFNK-LDGRIPEQLLSVTA 211 (331)
Q Consensus 138 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~ 211 (331)
..|+.||++++.++..--..+..+++|++|+|++| ++++..-..++.+ ++|++|+|++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36799999999988766667889999999999999 4886655666665 479999999984 88766667788999
Q ss_pred CCeEEcccCC-Cc
Q 044710 212 LALLNLSYNR-LW 223 (331)
Q Consensus 212 L~~L~ls~N~-ls 223 (331)
|++|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999985 44
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.17 E-value=2e-05 Score=70.75 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred cccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCc
Q 044710 93 RIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN 172 (331)
Q Consensus 93 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 172 (331)
..|.++..|+.+.+......++.. .+..+..|+.+.+. +.++..-..+|.++.+|+.+++..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~----------------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTG----------------AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTT----------------TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ceeeecccccEEecccccceecCc----------------ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence 346777778777765544322211 11236778888886 4455344567888999999999865
Q ss_pred ccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCC
Q 044710 173 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 222 (331)
Q Consensus 173 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l 222 (331)
++.....+|.++.+|+.+.|..+ ++.....+|.+|.+|+.+++.++..
T Consensus 322 -v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 322 -ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred -ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 55455678999999999999755 6656667899999999999988754
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.01 E-value=7.5e-05 Score=66.46 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=88.9
Q ss_pred hhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCCCCCCcCCCCccEEEccCCCCCCCCCccccCCc
Q 044710 19 SLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCKSNITFPFQALQIIDLSHNEFTGFLPTRIFPGM 98 (331)
Q Consensus 19 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l 98 (331)
.+..+..+..+.+....- ......+..+.+|+.+.+..+ +....... +..+..|+.+.+..+ ++ .+....|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~--f~~~~~L~~i~lp~~-v~-~I~~~aF~~~ 262 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGA--FYGMKALDEIAIPKN-VT-SIGSFLLQNC 262 (379)
T ss_dssp ECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTT--TTTCSSCCEEEECTT-CC-EECTTTTTTC
T ss_pred ccccccccccccccccee-EEeecccccccccceeeeccc-eeEEcccc--ccCCccceEEEcCCC-cc-EeCcccccee
Confidence 455556666666555433 244556777888888887655 22222222 366788888888765 44 4555555555
Q ss_pred cccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcCCCCCchhhhCCCCCCEEEccCcccccCC
Q 044710 99 EAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 178 (331)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 178 (331)
..|+.+ .+..+ +...-...|..+.+|+.+.+..+.++...
T Consensus 263 ~~l~~i---------------------------------------~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~ 302 (379)
T 4h09_A 263 TALKTL---------------------------------------NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE 302 (379)
T ss_dssp TTCCEE---------------------------------------EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred ehhccc---------------------------------------ccccc-ceeccccccccccccccccccccccceeh
Confidence 544433 33221 22122344566667777777666666445
Q ss_pred cccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEccc
Q 044710 179 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 219 (331)
Q Consensus 179 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~ 219 (331)
..+|.++.+|+.++|..+ ++.....+|.++.+|+.+.+..
T Consensus 303 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 566777777777777544 4434445666777777666543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.93 E-value=0.00018 Score=63.93 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=119.3
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecccccccCCC----------CCCC
Q 044710 1 NLRSLDLNNNKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSNRFYGPLCK----------SNIT 70 (331)
Q Consensus 1 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~ 70 (331)
+|+.+.+..+ ++.....+|.++ +++.+.+..+ ++......|..+.+++.+.+..+........ ...+
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 3667777654 332444566655 5666665543 4444556777888888887765432110000 0001
Q ss_pred cCCCCccEEEccCCCCCCCCCccccCCccccccccccccccccCCccccceeEEEEcCchhhHHHHhccCCEEEcCCCcC
Q 044710 71 FPFQALQIIDLSHNEFTGFLPTRIFPGMEAMKNVDEQRRLEYMGGAFYNESITVVMKGHDFQLQKILVMFRAMDFSSNRF 150 (331)
Q Consensus 71 ~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 150 (331)
.....+..+.+..+.- .+....+.....++.+.+..+...+... ....+..|+.+.+..+ +
T Consensus 191 ~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~~~i~~~----------------~f~~~~~L~~i~lp~~-v 251 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGVTTLGDG----------------AFYGMKALDEIAIPKN-V 251 (379)
T ss_dssp CTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTTCCEECTT----------------TTTTCSSCCEEEECTT-C
T ss_pred ccccccccccccccee--EEeecccccccccceeeeccceeEEccc----------------cccCCccceEEEcCCC-c
Confidence 2334455555443221 2222335555556555544433222211 1122567788888665 5
Q ss_pred CCCCchhhhCCCCCCEEEccCcccccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEcccC
Q 044710 151 HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 220 (331)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 220 (331)
+..-..+|..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.+++..+
T Consensus 252 ~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 252 TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 5344567888999999999754 55455678999999999999999998777789999999999999755
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=1.2e-05 Score=64.19 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=59.6
Q ss_pred hccCCEEEcCCCcCCCC----CchhhhCCCCCCEEEccCcccccCC----cccccCCCCCcEEeCCCC---cCCCC----
Q 044710 137 LVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFN---KLDGR---- 201 (331)
Q Consensus 137 ~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~---- 201 (331)
-..|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.+.. .+.+..-+.|++|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 35678888888888743 4455666788888999988887543 234555677899999865 33321
Q ss_pred CcccccCCCCCCeEEcccCCC
Q 044710 202 IPEQLLSVTALALLNLSYNRL 222 (331)
Q Consensus 202 ~~~~l~~l~~L~~L~ls~N~l 222 (331)
+...+...+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 344566778888888887754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=3.4e-05 Score=61.66 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=65.2
Q ss_pred hccCCEEEcCCC-cCCCC----CchhhhCCCCCCEEEccCcccccCCc----ccccCCCCCcEEeCCCCcCCCC----Cc
Q 044710 137 LVMFRAMDFSSN-RFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGR----IP 203 (331)
Q Consensus 137 ~~~L~~L~ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~----~~ 203 (331)
-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|+|.+... +.+..-++|++|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457899999986 77642 45667778899999999999985433 3444568999999999999864 34
Q ss_pred ccccCCCCCCeEEcccCC
Q 044710 204 EQLLSVTALALLNLSYNR 221 (331)
Q Consensus 204 ~~l~~l~~L~~L~ls~N~ 221 (331)
+.+...+.|++|++++|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHTTTTCCCSEEECCCCS
T ss_pred HHHhhCCceeEEECCCCc
Confidence 456677889999998753
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.37 E-value=0.00025 Score=52.80 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=15.8
Q ss_pred CCcEEeccCCcCccCchhhhcCCCCCCeEEeeccc
Q 044710 25 KLEVVNVGNNMISDSFPCWLGSLPELKILELRSNR 59 (331)
Q Consensus 25 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 59 (331)
+|++|+|++|.|+...+..|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444444444444334444444444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00057 Score=50.86 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=22.5
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCCeEEcccCCCc
Q 044710 187 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 223 (331)
Q Consensus 187 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ls 223 (331)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666666666555555566666666666666654
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.30 E-value=0.45 Score=27.37 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=3.8
Q ss_pred ehhhhhhhh
Q 044710 285 MGYASGLVI 293 (331)
Q Consensus 285 ~~~~~~~~~ 293 (331)
.|++.|+++
T Consensus 15 ~gVVgGv~~ 23 (44)
T 2ks1_B 15 TGMVGALLL 23 (44)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 344444443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.08 E-value=0.38 Score=27.66 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=3.0
Q ss_pred ehhhhhhh
Q 044710 285 MGYASGLV 292 (331)
Q Consensus 285 ~~~~~~~~ 292 (331)
.|++.|++
T Consensus 14 ~gVVgGv~ 21 (44)
T 2l2t_A 14 AGVIGGLF 21 (44)
T ss_dssp HHHHHHHH
T ss_pred EeehHHHH
Confidence 33433333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.42 E-value=3.4 Score=28.54 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=32.6
Q ss_pred CcCCCCCchhhhCCCCCcEEeccCCcCccCchhhhcCCCCCCeEEeecc
Q 044710 10 NKLEGPLPISLAKCMKLEVVNVGNNMISDSFPCWLGSLPELKILELRSN 58 (331)
Q Consensus 10 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 58 (331)
..++.+...+|.+|.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3555555677788888887777664 44455667777777777777653
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.89 E-value=14 Score=25.28 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=27.1
Q ss_pred cccCCcccccCCCCCcEEeCCCCcCCCCCcccccCCCCCCeEEccc
Q 044710 174 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 219 (331)
Q Consensus 174 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~ 219 (331)
++.....+|.++++|+.+.+..+ ++......|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334456666777777776654 3334455677777777777654
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=49.56 E-value=3.5 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=5.9
Q ss_pred ehhhhhhhhhhh
Q 044710 285 MGYASGLVIGLS 296 (331)
Q Consensus 285 ~~~~~~~~~~~~ 296 (331)
.|+++|.+++++
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 455555554433
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=44.47 E-value=5.2 Score=22.33 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=3.6
Q ss_pred ehhhhhhhh
Q 044710 285 MGYASGLVI 293 (331)
Q Consensus 285 ~~~~~~~~~ 293 (331)
++++.|+++
T Consensus 17 ~~vv~Gv~l 25 (41)
T 2k9y_A 17 GGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 334444433
Done!