Query 044715
Match_columns 202
No_of_seqs 32 out of 34
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04844 Ovate: Transcriptiona 99.7 9.2E-18 2E-22 119.8 6.6 58 129-187 2-59 (59)
2 TIGR01568 A_thal_3678 uncharac 99.6 6.6E-16 1.4E-20 112.6 6.3 58 129-187 8-66 (66)
3 smart00544 MA3 Domain in DAP-5 71.0 4.8 0.0001 29.6 2.9 22 153-174 16-37 (113)
4 PRK13480 3'-5' exoribonuclease 56.8 17 0.00036 33.2 4.2 36 156-191 114-149 (314)
5 PF04901 RAMP: Receptor activi 51.4 59 0.0013 26.1 6.1 53 133-190 8-71 (113)
6 PF02847 MA3: MA3 domain; Int 49.3 56 0.0012 23.8 5.3 22 153-174 16-37 (113)
7 PF10273 WGG: Pre-rRNA-process 47.1 53 0.0012 24.4 4.9 39 124-163 25-63 (82)
8 KOG0403 Neoplastic transformat 44.3 39 0.00085 34.0 4.8 61 125-189 335-414 (645)
9 PF14837 INTS5_N: Integrator c 37.1 96 0.0021 27.4 5.7 48 124-174 76-150 (213)
10 PRK12708 flgJ peptidoglycan hy 35.6 73 0.0016 26.5 4.5 26 121-146 21-46 (134)
11 PRK11922 RNA polymerase sigma 32.1 2.4E+02 0.0053 23.3 7.1 64 102-165 5-72 (231)
12 PF10552 ORF6C: ORF6C domain; 30.7 61 0.0013 25.0 3.1 25 161-185 52-78 (116)
13 PF14774 FAM177: FAM177 family 27.3 78 0.0017 25.7 3.3 32 149-180 77-109 (123)
14 PF10906 DUF2697: Protein of u 25.8 70 0.0015 23.9 2.6 23 161-183 5-27 (68)
15 COG5209 RCD1 Uncharacterized p 24.7 1.2E+02 0.0025 28.4 4.3 48 124-174 219-276 (315)
16 PHA03188 UL14 tegument protein 24.5 3E+02 0.0066 24.5 6.6 66 109-182 43-118 (199)
17 PF10410 DnaB_bind: DnaB-helic 24.1 2.1E+02 0.0046 18.6 5.1 45 137-181 3-51 (59)
18 PRK12519 RNA polymerase sigma 23.7 3.1E+02 0.0068 21.5 6.1 53 103-155 5-59 (194)
19 KOG0031 Myosin regulatory ligh 22.3 87 0.0019 27.3 2.8 40 124-163 99-147 (171)
20 PRK13777 transcriptional regul 21.9 3.6E+02 0.0078 22.8 6.4 61 127-188 115-177 (185)
21 PRK12790 chemotactic signal-re 21.7 2.3E+02 0.005 23.1 5.0 23 124-146 36-58 (115)
22 PF08385 DHC_N1: Dynein heavy 21.0 4.5E+02 0.0097 24.3 7.3 56 130-185 305-362 (579)
23 PF06761 IcmF-related: Intrace 20.3 3.7E+02 0.008 23.5 6.4 42 150-191 70-113 (312)
No 1
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=99.72 E-value=9.2e-18 Score=119.80 Aligned_cols=58 Identities=31% Similarity=0.603 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCC
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFF 187 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs 187 (202)
.||+.+|+++|+|||+|.| ++++.|+||||+||+.||+|.||.+|.+.|.|+|.++|+
T Consensus 2 ~DP~~DFr~SM~EMI~~~~-i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s 59 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENG-IRDWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS 59 (59)
T ss_pred CCHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence 4899999999999999998 999999999999999999999999999999999999986
No 2
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=99.62 E-value=6.6e-16 Score=112.62 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCC
Q 044715 129 EDACRSFENYLVEMVVEEGKV-GDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFF 187 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV-~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs 187 (202)
.||+.+|+++|+|||+|.| + .++.|+||||.||+.||++.+|.+|.+.|.|+|..||+
T Consensus 8 ~DPy~DFr~SM~EMI~~~~-i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~ 66 (66)
T TIGR01568 8 DDPYEDFRRSMEEMIEERE-LEADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS 66 (66)
T ss_pred CChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence 5899999999999999998 6 57899999999999999999999999999999999986
No 3
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=70.98 E-value=4.8 Score=29.62 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=16.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHH
Q 044715 153 TDVEELLYCWKNLKCPVFIDLV 174 (202)
Q Consensus 153 ~DVEELL~cy~~LnSPvf~dLV 174 (202)
.|++|..+|...|++|.|+.-|
T Consensus 16 ~D~~ea~~~l~~L~~~~~~~~v 37 (113)
T smart00544 16 GDTDEAVHCLLELKLPEQHHEV 37 (113)
T ss_pred CCHHHHHHHHHHhCCCcchHHH
Confidence 3888888888888888555444
No 4
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=56.84 E-value=17 Score=33.20 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCC
Q 044715 156 EELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDD 191 (202)
Q Consensus 156 EELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~ 191 (202)
+||......+++|.+..||..||.+++..|+..|+-
T Consensus 114 ~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa 149 (314)
T PRK13480 114 EEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAA 149 (314)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChH
Confidence 456667778999999999999999999999987753
No 5
>PF04901 RAMP: Receptor activity modifying family ; InterPro: IPR006985 The calcitonin-receptor-like receptor can function as either a calcitonin-gene-related peptide or an adrenomedullin receptor. The receptors function is modified by receptor activity modifying protein or RAMP. RAMPs are single-transmembrane-domain proteins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0008277 regulation of G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2YX8_A 3N7R_C 3N7P_D 3N7S_C 2XVT_A 3AQF_A 3AQE_B.
Probab=51.44 E-value=59 Score=26.09 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCC-----------hhHHHHHHHHHHHHHHhhCCCCC
Q 044715 133 RSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKC-----------PVFIDLVCRFYGELCKDLFFPED 190 (202)
Q Consensus 133 rsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnS-----------Pvf~dLV~rFF~ElC~dlFs~~~ 190 (202)
..|+..|..+ +..++.|..+....|..|+. .-=.-+|++||.++-+.+|+.=.
T Consensus 8 ~~F~~~M~~i-----~~~~WC~w~~~~~~Y~~Lt~Cte~~A~~~~C~wPn~lvd~ff~~iH~~yF~nC~ 71 (113)
T PF04901_consen 8 KSFKDDMDNI-----DSQDWCDWPETIRPYSELTNCTEQVAEKLGCFWPNPLVDDFFIAIHRQYFSNCS 71 (113)
T ss_dssp HHHHHHHHHH-----GGGGTTBHHHHHHHHHHHHHHHHHHHHHCT--SS-HHHHHHHHHHHHHCTTTS-
T ss_pred HHHHHHHHhC-----CccccCcHHHHHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4676665443 35789999999999998863 22246889999999999998643
No 6
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.29 E-value=56 Score=23.76 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=14.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHH
Q 044715 153 TDVEELLYCWKNLKCPVFIDLV 174 (202)
Q Consensus 153 ~DVEELL~cy~~LnSPvf~dLV 174 (202)
.|++|...|...|+.|.|+.-|
T Consensus 16 ~d~~ea~~~l~el~~~~~~~~v 37 (113)
T PF02847_consen 16 GDVDEAVECLKELKLPSQHHEV 37 (113)
T ss_dssp T-HHHHHHHHHHTT-GGGHHHH
T ss_pred CCHHHHHHHHHHhCCCccHHHH
Confidence 3888888888888888444433
No 7
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=47.14 E-value=53 Score=24.37 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044715 124 EVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWK 163 (202)
Q Consensus 124 ~~~~vedacrsFEn~LvEMivEegkV~dl~DVEELL~cy~ 163 (202)
|+.+-.+--+.|..++++++.+.. .-+..|||++|.-|+
T Consensus 25 GG~~s~~K~~~l~~~i~~~f~~~~-~~~~~~le~~L~~~m 63 (82)
T PF10273_consen 25 GGPDSQEKADWLAEVIVDWFTENK-DPDADDLEDFLEDIM 63 (82)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHH
Confidence 444556666788999999998864 555999999998776
No 8
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.27 E-value=39 Score=34.05 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHH-------------------HHHHHHHHHhh
Q 044715 125 VEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLV-------------------CRFYGELCKDL 185 (202)
Q Consensus 125 ~~~vedacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV-------------------~rFF~ElC~dl 185 (202)
..+-|| -|.|++-+.-+|-|= +--.|+-|+.+|-.-||-|.|..++ +.|..++|.++
T Consensus 335 ~g~~e~-~r~Fkk~~~~IIqEY---FlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~ 410 (645)
T KOG0403|consen 335 PGDSEN-LRAFKKDLTPIIQEY---FLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEV 410 (645)
T ss_pred CCcchH-HHHHHHhhHHHHHHH---HhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhccc
Confidence 334566 899999999988875 1224899999999999998775444 78999999999
Q ss_pred CCCC
Q 044715 186 FFPE 189 (202)
Q Consensus 186 Fs~~ 189 (202)
||+.
T Consensus 411 fste 414 (645)
T KOG0403|consen 411 FSTE 414 (645)
T ss_pred CCHH
Confidence 9964
No 9
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=37.09 E-value=96 Score=27.41 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhc-CC--------------------------CCchhhHHHHHHHHhhcCChhHHHHH
Q 044715 124 EVEDVEDACRSFENYLVEMVVEE-GK--------------------------VGDLTDVEELLYCWKNLKCPVFIDLV 174 (202)
Q Consensus 124 ~~~~vedacrsFEn~LvEMivEe-gk--------------------------V~dl~DVEELL~cy~~LnSPvf~dLV 174 (202)
...+++++.+..-+.|.+ ++++ ++ +.+..|+.|+|+.|+. |++-+.|+
T Consensus 76 ~~~~~~~ai~ei~~~L~~-fv~~npkAWap~i~~Wsl~Llgelssk~~~R~~~~~~~~~~e~l~~Wms--c~a~r~L~ 150 (213)
T PF14837_consen 76 DEADLDEAIQEIHDVLSR-FVEANPKAWAPLISAWSLELLGELSSKYAGRRGVPHSSSLNELLQLWMS--CQATRTLM 150 (213)
T ss_pred CCccHHHHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHh--cHHHHHHH
Confidence 556777888888888888 5554 44 4555699999999998 77665554
No 10
>PRK12708 flgJ peptidoglycan hydrolase; Reviewed
Probab=35.55 E-value=73 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhc
Q 044715 121 KRDEVEDVEDACRSFENYLVEMVVEE 146 (202)
Q Consensus 121 kr~~~~~vedacrsFEn~LvEMivEe 146 (202)
+....+...+||+.||--++.||+..
T Consensus 21 ~~d~~~aL~~aAqQFEAlFlq~MLKs 46 (134)
T PRK12708 21 QNLEQGALKLAAQQFEAQFLQTVLKQ 46 (134)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477789999999999999999986
No 11
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=32.08 E-value=2.4e+02 Score=23.33 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=38.0
Q ss_pred CCCCCCCCChHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHhc-CCCCchhhHHH--HHHHHhhc
Q 044715 102 PVLFPSPITPDYVKACRLSKR-DEVEDVEDACRSFENYLVEMVVEE-GKVGDLTDVEE--LLYCWKNL 165 (202)
Q Consensus 102 ~~~~psP~Tpa~~k~~~~~kr-~~~~~vedacrsFEn~LvEMivEe-gkV~dl~DVEE--LL~cy~~L 165 (202)
|+.||-|||+..-..-..... .+.+..+.-++.+...+...+.-- ++-.+..||=+ ++..|.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~gd~~a~~~l~~~y~~~l~~~a~~~~~~~~~AEDlvQE~fi~l~~~~ 72 (231)
T PRK11922 5 PASRPPPLSAASDRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRAL 72 (231)
T ss_pred CCCCCCCcCcccHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Confidence 467889999977655333322 355667777788888777776655 33333444422 33445443
No 12
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=30.73 E-value=61 Score=24.99 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=21.6
Q ss_pred HHhhcCChhHHH--HHHHHHHHHHHhh
Q 044715 161 CWKNLKCPVFID--LVCRFYGELCKDL 185 (202)
Q Consensus 161 cy~~LnSPvf~d--LV~rFF~ElC~dl 185 (202)
++-+..||.|.+ +-.++|.++|.+|
T Consensus 52 ~lgg~~s~ay~~~~~~~k~f~~i~~~l 78 (116)
T PF10552_consen 52 LLGGKGSPAYKDKSFRRKLFSDIYRDL 78 (116)
T ss_pred HHhccccchhhhhHHhHHHHHHHHHHH
Confidence 555678999999 9999999999987
No 13
>PF14774 FAM177: FAM177 family
Probab=27.34 E-value=78 Score=25.73 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=26.4
Q ss_pred CCchh-hHHHHHHHHhhcCChhHHHHHHHHHHH
Q 044715 149 VGDLT-DVEELLYCWKNLKCPVFIDLVCRFYGE 180 (202)
Q Consensus 149 V~dl~-DVEELL~cy~~LnSPvf~dLV~rFF~E 180 (202)
+-+.+ -|-|-|..|.+||+|.|...|+.++..
T Consensus 77 ~l~~~d~~Ge~lA~~fGit~~KYqy~idey~r~ 109 (123)
T PF14774_consen 77 SLSGCDYLGEKLASFFGITSPKYQYAIDEYYRM 109 (123)
T ss_pred HhhHHhhhhhHHHHHhCCCchHHHHHHHHHHHH
Confidence 44443 358999999999999999999999864
No 14
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=25.76 E-value=70 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHhhcCChhHHHHHHHHHHHHHH
Q 044715 161 CWKNLKCPVFIDLVCRFYGELCK 183 (202)
Q Consensus 161 cy~~LnSPvf~dLV~rFF~ElC~ 183 (202)
|++-|+||.||.-|.+.|..+=.
T Consensus 5 y~kLl~SpgFhrfVR~Ih~kVN~ 27 (68)
T PF10906_consen 5 YRKLLDSPGFHRFVRRIHAKVNG 27 (68)
T ss_pred HHHHHcChhHHHHHHHHHHHHhC
Confidence 67899999999999999988743
No 15
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.69 E-value=1.2e+02 Score=28.44 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHH---------HHHHHHHHhcCCCCchhhHHHHHHHHhhcCC-hhHHHHH
Q 044715 124 EVEDVEDACRSFE---------NYLVEMVVEEGKVGDLTDVEELLYCWKNLKC-PVFIDLV 174 (202)
Q Consensus 124 ~~~~vedacrsFE---------n~LvEMivEegkV~dl~DVEELL~cy~~LnS-Pvf~dLV 174 (202)
+|++..=+|+.|| |.|++-+|.-|.. .=+.-.++||.+|.- |.-..+.
T Consensus 219 dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~---RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 219 DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGST---RLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHheeecCCHhHHHHH
Confidence 7888999999999 4566666666533 345678999999964 5555555
No 16
>PHA03188 UL14 tegument protein; Provisional
Probab=24.53 E-value=3e+02 Score=24.54 Aligned_cols=66 Identities=24% Similarity=0.476 Sum_probs=43.6
Q ss_pred CChHHHHHhhhhccccchhHHHHHHHHHHHH-----HHHHHhc-----CCCCchhhHHHHHHHHhhcCChhHHHHHHHHH
Q 044715 109 ITPDYVKACRLSKRDEVEDVEDACRSFENYL-----VEMVVEE-----GKVGDLTDVEELLYCWKNLKCPVFIDLVCRFY 178 (202)
Q Consensus 109 ~Tpa~~k~~~~~kr~~~~~vedacrsFEn~L-----vEMivEe-----gkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF 178 (202)
-.|+++-+-.+. .+||++++.+| +|.+--+ ..|+..+++.++|..+-++-+|.|++=+++-=
T Consensus 43 ~dP~FV~AFTsA--------K~A~~dl~rqLrs~aRve~veQK~r~Iq~rVeeQ~a~r~iL~~nRRfL~PdFid~lD~~E 114 (199)
T PHA03188 43 QDPAFVHAFTAA--------KDACADLNNNIRSAARIAAVEQKIADIQEKVEEQTSIQKILNANRRYIAPDFIEGLDKIE 114 (199)
T ss_pred CChHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHH
Confidence 345666554433 36788888777 2322111 13666789999999999999999999886554
Q ss_pred HHHH
Q 044715 179 GELC 182 (202)
Q Consensus 179 ~ElC 182 (202)
.++|
T Consensus 115 D~l~ 118 (199)
T PHA03188 115 DDNC 118 (199)
T ss_pred HHHH
Confidence 4333
No 17
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.06 E-value=2.1e+02 Score=18.57 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCchh----hHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 044715 137 NYLVEMVVEEGKVGDLT----DVEELLYCWKNLKCPVFIDLVCRFYGEL 181 (202)
Q Consensus 137 n~LvEMivEegkV~dl~----DVEELL~cy~~LnSPvf~dLV~rFF~El 181 (202)
.++.+.+.+++++.+.. =++++......+.+|+..++..+-..+.
T Consensus 3 ef~~~~l~~~~dl~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~ 51 (59)
T PF10410_consen 3 EFLIERLSKGYDLDTPEGKAEAVREAAPLIAQIPDPIERELYIRELAER 51 (59)
T ss_dssp HHHHHHHGGGS-TTSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677778887776653 4778888899999999988766655443
No 18
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=23.74 E-value=3.1e+02 Score=21.49 Aligned_cols=53 Identities=6% Similarity=0.061 Sum_probs=32.1
Q ss_pred CCCCCCCChHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHhc-CCCCchhhH
Q 044715 103 VLFPSPITPDYVKACRLSKR-DEVEDVEDACRSFENYLVEMVVEE-GKVGDLTDV 155 (202)
Q Consensus 103 ~~~psP~Tpa~~k~~~~~kr-~~~~~vedacrsFEn~LvEMivEe-gkV~dl~DV 155 (202)
-.||+|++......-...-+ .+....++-++.+...|.-++... |+..+..||
T Consensus 5 ~~~~~~~~~~~~~~l~~~~~~gd~~a~~~L~~~y~~~l~~~~~~~~~~~~~aeDl 59 (194)
T PRK12519 5 DSAPTSLSSRSDAELFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDL 59 (194)
T ss_pred cCCCCCCCcccHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888766544333222 255567788888888888777766 333333333
No 19
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=22.28 E-value=87 Score=27.27 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=34.2
Q ss_pred cchhHHHHHHHH---------HHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 044715 124 EVEDVEDACRSF---------ENYLVEMVVEEGKVGDLTDVEELLYCWK 163 (202)
Q Consensus 124 ~~~~vedacrsF---------En~LvEMivEegkV~dl~DVEELL~cy~ 163 (202)
.++.+-+|++-| |.+|.|||...|+-.+-.+|++++.-+-
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p 147 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAP 147 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCC
Confidence 567778899888 5689999999999999999999887654
No 20
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=21.93 E-value=3.6e+02 Score=22.81 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHh--cCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCC
Q 044715 127 DVEDACRSFENYLVEMVVE--EGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFP 188 (202)
Q Consensus 127 ~vedacrsFEn~LvEMivE--egkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~ 188 (202)
++.......++.+...+-+ += .....+++||..--.++-.++|+++..+.|.++=.++-.-
T Consensus 115 ~l~~~~~~~e~~~~~~~s~~~~l-~~~~~e~~~l~~ll~~iy~~~~~~~~~~~~~~~~~~~~~~ 177 (185)
T PRK13777 115 ETMEEYDPENNSVFNGALPLREL-YGKFPEFIELMAIVRNIYGDDFIDIFEKSLENIEENFTEE 177 (185)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH-hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhc
Confidence 3344555566665555522 20 1223678888888888999999999999999998887553
No 21
>PRK12790 chemotactic signal-response protein CheL; Provisional
Probab=21.73 E-value=2.3e+02 Score=23.07 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhc
Q 044715 124 EVEDVEDACRSFENYLVEMVVEE 146 (202)
Q Consensus 124 ~~~~vedacrsFEn~LvEMivEe 146 (202)
....+.++|++||--++.||++.
T Consensus 36 ~~aklreaAqqFEa~FL~~MLKs 58 (115)
T PRK12790 36 AQAKAKATATDFEAMFLNSMFSQ 58 (115)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999886
No 22
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=21.02 E-value=4.5e+02 Score=24.27 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhh
Q 044715 130 DACRSFENYLVEMVVEE-GKVGDLTDVEELLYCWKNL-KCPVFIDLVCRFYGELCKDL 185 (202)
Q Consensus 130 dacrsFEn~LvEMivEe-gkV~dl~DVEELL~cy~~L-nSPvf~dLV~rFF~ElC~dl 185 (202)
+.+.+.|+.+...|-.- ++...+.+.=++|.-|..| +.|.....+.+.|.+++..+
T Consensus 305 ~~i~~lE~~l~~~l~~~f~~~~s~~~~~~ll~~f~~L~~Rp~I~~~l~~~~~~ll~~~ 362 (579)
T PF08385_consen 305 ERIEDLERRLANILRQAFDDCSSPEEAFRLLQKFKSLLNRPRIRKALQEKYEQLLQQF 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 33444455555555555 4455555555566666655 77777777777777665543
No 23
>PF06761 IcmF-related: Intracellular multiplication and human macrophage-killing; InterPro: IPR009612 This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many entry members are hypothetical proteins.
Probab=20.31 E-value=3.7e+02 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred CchhhHHHHHHHHhhcCChhHH--HHHHHHHHHHHHhhCCCCCC
Q 044715 150 GDLTDVEELLYCWKNLKCPVFI--DLVCRFYGELCKDLFFPEDD 191 (202)
Q Consensus 150 ~dl~DVEELL~cy~~LnSPvf~--dLV~rFF~ElC~dlFs~~~~ 191 (202)
.|..++=|.|..|.+|.-|.+. +.|...++..|.+.++....
T Consensus 70 ~~~~~~y~aLk~YLML~~~~~~d~~~l~~w~~~~w~~~~~~~~~ 113 (312)
T PF06761_consen 70 DDPDALYEALKAYLMLTDPEHRDADFLKAWLAQDWQEQYPGQPD 113 (312)
T ss_pred ccHHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHHHHhCCCCcc
Confidence 7778889999999999999875 57899999999999997744
Done!