Query 044715
Match_columns 202
No_of_seqs 32 out of 34
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rg8_A Programmed cell death p 79.6 1.9 6.6E-05 34.1 4.2 25 151-175 22-46 (165)
2 2nsz_A Programmed cell death p 77.5 5.1 0.00018 30.2 5.8 22 153-174 21-42 (129)
3 2ion_A PDCD4, programmed cell 74.6 6 0.00021 30.9 5.7 23 153-175 23-45 (152)
4 1ug3_A EIF4GI, eukaryotic prot 71.4 11 0.00038 32.1 7.0 23 154-176 26-49 (339)
5 3l6a_A Eukaryotic translation 62.5 6.4 0.00022 34.6 3.9 36 139-176 14-51 (364)
6 2zu6_B Programmed cell death p 58.4 7.1 0.00024 33.7 3.4 39 135-176 2-40 (307)
7 2zu6_B Programmed cell death p 55.5 32 0.0011 29.7 7.0 43 127-176 161-203 (307)
8 3eiq_C Programmed cell death p 45.3 17 0.00059 32.2 3.8 41 133-176 51-91 (358)
9 3eiq_C Programmed cell death p 42.2 55 0.0019 29.0 6.5 44 127-177 212-256 (358)
10 1ugp_A NitrIle hydratase alpha 42.2 47 0.0016 28.3 5.8 48 122-170 6-53 (203)
11 3n7s_C Receptor activity-modif 36.6 66 0.0023 24.2 5.3 43 149-191 32-85 (96)
12 2l60_A Peptide YY; GPCR ligand 35.8 5.2 0.00018 26.6 -0.8 34 141-176 4-37 (41)
13 2bv1_A Regulator of G-protein 27.1 69 0.0024 23.5 4.0 60 129-198 33-92 (145)
14 2dlr_A RGS10, regulator of G-p 26.1 82 0.0028 23.2 4.2 62 129-199 26-87 (149)
15 3bpj_A Eukaryotic translation 25.5 38 0.0013 24.1 2.2 21 166-186 32-52 (80)
16 2ihb_B Regulator of G-protein 24.7 1E+02 0.0035 22.9 4.5 62 129-199 42-103 (153)
17 2jm5_A RGS18, regulator of G-p 22.6 1.4E+02 0.0048 22.0 5.0 61 129-198 22-82 (151)
18 2krc_A DNA-directed RNA polyme 22.5 1.2E+02 0.004 22.7 4.4 44 141-184 21-64 (99)
19 1zv4_X RGS17, regulator of G-p 22.2 1.1E+02 0.0037 23.1 4.4 61 129-198 44-104 (158)
20 2bf9_A Pancreatic hormone; tur 21.8 36 0.0012 22.0 1.3 24 151-176 10-33 (36)
21 1f8p_A Neuropeptide Y (PNPY); 21.0 32 0.0011 22.3 0.9 24 151-176 10-33 (37)
22 3c7l_A Regulator of G-protein 20.6 1E+02 0.0035 22.4 3.8 61 129-198 29-89 (137)
23 1cmz_A Protein (GAIP (G-alpha 20.4 1.2E+02 0.004 22.4 4.1 61 129-198 31-91 (152)
No 1
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=79.64 E-value=1.9 Score=34.09 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHH
Q 044715 151 DLTDVEELLYCWKNLKCPVFIDLVC 175 (202)
Q Consensus 151 dl~DVEELL~cy~~LnSPvf~dLV~ 175 (202)
...|++|.+.|...|++|.|+..|.
T Consensus 22 ~~~D~~Ea~~~l~eL~~p~~~~~~V 46 (165)
T 2rg8_A 22 EHGDTNEVAEMLRDLNLGEMKSGVP 46 (165)
T ss_dssp HHCCHHHHHHHHHHHTCSGGGGHHH
T ss_pred cCCCHHHHHHHHHHhCCcccHHHHH
Confidence 3459999999999999998886553
No 2
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.52 E-value=5.1 Score=30.18 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHH
Q 044715 153 TDVEELLYCWKNLKCPVFIDLV 174 (202)
Q Consensus 153 ~DVEELL~cy~~LnSPvf~dLV 174 (202)
.|++|...|...|++|.||.-|
T Consensus 21 ~D~~Ea~~cl~eL~~p~f~~e~ 42 (129)
T 2nsz_A 21 GDISEAEHCLKELEVPHFHHEL 42 (129)
T ss_dssp CCHHHHHHHHHHHTCGGGHHHH
T ss_pred CCHHHHHHHHHHhCCCccHHHH
Confidence 4999999999999999887644
No 3
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.60 E-value=6 Score=30.87 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHH
Q 044715 153 TDVEELLYCWKNLKCPVFIDLVC 175 (202)
Q Consensus 153 ~DVEELL~cy~~LnSPvf~dLV~ 175 (202)
-|++|...|...|++|.||.-|.
T Consensus 23 ~D~~EA~~cl~EL~~p~f~~e~V 45 (152)
T 2ion_A 23 GDISEAEHCLKELEVPHFHHELV 45 (152)
T ss_dssp CCHHHHHHHHHHHTCGGGHHHHH
T ss_pred CCHHHHHHHHHHhCCCcchHHHH
Confidence 49999999999999998875443
No 4
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=71.41 E-value=11 Score=32.14 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhcCChhHH-HHHHH
Q 044715 154 DVEELLYCWKNLKCPVFI-DLVCR 176 (202)
Q Consensus 154 DVEELL~cy~~LnSPvf~-dLV~r 176 (202)
|++|.+.|+..|++|.|| .+|.+
T Consensus 26 d~~Ea~~ci~el~~p~~~~~~v~~ 49 (339)
T 1ug3_A 26 DMKEAVQCVQELASPSLLFIFVRH 49 (339)
T ss_dssp CHHHHHHHHHTTCCGGGHHHHHHH
T ss_pred CHHHHHHHHHHcCCcccHHHHHHH
Confidence 899999999999999555 44433
No 5
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.54 E-value=6.4 Score=34.60 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHhhcCChh-HH-HHHHH
Q 044715 139 LVEMVVEEGKVGDLTDVEELLYCWKNLKCPV-FI-DLVCR 176 (202)
Q Consensus 139 LvEMivEegkV~dl~DVEELL~cy~~LnSPv-f~-dLV~r 176 (202)
.++.|++| -.+..|++|.+.|+..|++|. |+ .+|.+
T Consensus 14 ~~~~ii~E--Y~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~ 51 (364)
T 3l6a_A 14 LTETVVTE--YLNSGNANEAVNGVREMRAPKHFLPEMLSK 51 (364)
T ss_dssp HHHHHHHH--HHHHCCHHHHHHHHHHHTCCGGGHHHHHHH
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHhCCchhhHHHHHHH
Confidence 34555555 234468999999999999994 54 55543
No 6
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.44 E-value=7.1 Score=33.74 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 135 FENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 135 FEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
|++.+..+|-|= ++-.|++|++.|...|++|.|+..+.+
T Consensus 2 ~~k~~~~ii~EY---f~~~d~~Ea~~~l~el~~p~~~~~~v~ 40 (307)
T 2zu6_B 2 FEKTLTPIIQEY---FEHGDTNEVAEMLRDLNLGEMKSGVPV 40 (307)
T ss_dssp HHHHHHHHHHHH---HHHCCHHHHHHHHHTTCCGGGGGGHHH
T ss_pred hHHHHHHHHHHH---HcCCCHHHHHHHHHHhCCcchHHHHHH
Confidence 455554444432 334599999999999999998766543
No 7
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.51 E-value=32 Score=29.67 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 127 DVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 127 ~vedacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
.+|+.-+...+-|-|.+.- .|++|...|...|+.|.||.-|.+
T Consensus 161 ~~eelkkki~~lL~EY~~~-------~D~~EA~~ci~EL~~p~f~~e~V~ 203 (307)
T 2zu6_B 161 SVNHLVKEIDMLLKEYLLS-------GDISEAEHCLKELEVPHFHHELVY 203 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHcCCCcchHHHHH
Confidence 3565555555555554432 399999999999999988754433
No 8
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.32 E-value=17 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 133 RSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 133 rsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
..|++....+|-|= .+-.|++|.+.|...|++|.|+..+.+
T Consensus 51 ee~~k~~~~ii~EY---f~~~d~~Ea~~~l~eL~~p~~~~~~v~ 91 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY---FEHGDTNEVAEMLRDLNLGEMKSGVPV 91 (358)
T ss_dssp HHHHHHHHHHHHHH---HHHCCHHHHHHHHHTTTCCGGGGGHHH
T ss_pred HHHHHHHHHHHHHH---hcCCCHHHHHHHHHHhCCchhHHHHHH
Confidence 45666555554442 345699999999999999998765543
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.25 E-value=55 Score=29.01 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHH-HHHHHH
Q 044715 127 DVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFI-DLVCRF 177 (202)
Q Consensus 127 ~vedacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~-dLV~rF 177 (202)
.||+.-+..++-|-|.+.- .|++|...|...|+.|.|| ++|.+.
T Consensus 212 ~veelkkki~~lL~EY~~s-------~D~~EA~~ci~EL~~p~fhhe~V~~a 256 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLS-------GDISEAEHCLKELEVPHFHHELVYEA 256 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccC-------CCHHHHHHHHHHccCCcchHHHHHHH
Confidence 4666666655555555432 4899999999999999875 455433
No 10
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=42.21 E-value=47 Score=28.33 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhH
Q 044715 122 RDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVF 170 (202)
Q Consensus 122 r~~~~~vedacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf 170 (202)
|..+++-.+....+..-|-++++|+| +-+-.+|++++..|...-+|..
T Consensus 6 ~~~~~~~~~~~~~r~~AL~~lL~eKG-li~~~~id~~~~~~e~~~gP~n 53 (203)
T 1ugp_A 6 RKSDEEIQKEITARVKALESMLIEQG-ILTTSMIDRMAEIYENEVGPHL 53 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHTSSHHH
T ss_pred hccccCccccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcccCCcc
Confidence 44566667778889999999999999 9999999999999999977765
No 11
>3n7s_C Receptor activity-modifying protein 1; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_C* 3n7p_D* 2yx8_A
Probab=36.58 E-value=66 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=34.8
Q ss_pred CCchhhHHHHHHHHhhcCChhH-----------HHHHHHHHHHHHHhhCCCCCC
Q 044715 149 VGDLTDVEELLYCWKNLKCPVF-----------IDLVCRFYGELCKDLFFPEDD 191 (202)
Q Consensus 149 V~dl~DVEELL~cy~~LnSPvf-----------~dLV~rFF~ElC~dlFs~~~~ 191 (202)
..++.|..++...|..|+.=.. --+|++||.++=+.+|+.=..
T Consensus 32 ~~~WC~W~~~i~~Y~~Lt~Cte~~A~~~~C~wPN~lve~ff~~iH~~yF~nC~~ 85 (96)
T 3n7s_C 32 ETLWCDWGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPI 85 (96)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHSTTSCS
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 5689999999999998875332 368899999999999986443
No 12
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=35.84 E-value=5.2 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 141 EMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 141 EMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
.|+.+=-...|-...|||-+||..|+ .|+.||+|
T Consensus 4 ~~l~~P~~Pg~~aspEela~Y~~~Lr--~YinlvTR 37 (41)
T 2l60_A 4 RELKKLERELKKLSPEELNRYYASLR--HYLNLVTR 37 (41)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH--HHHHHHTT
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHH--HHHHHhcc
Confidence 34444333445678999999999997 67888754
No 13
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=27.15 E-value=69 Score=23.54 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQ 198 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~ 198 (202)
...++.|.++|..-.-++ ++.=+.+||+ |.....+. +...-..|+..++++.+ +..||+.
T Consensus 33 p~g~~~F~~FL~~e~s~E-nl~Fw~~ve~----yk~~~~~~----~~~~a~~Iy~~yi~~~s-~~evni~ 92 (145)
T 2bv1_A 33 QTGQNVFGSFLKSEFSEE-NIEFWLACED----YKKTESDL----LPCKAEEIYKAFVHSDA-AKQINID 92 (145)
T ss_dssp HHHHHHHHHHHHHTTCTH-HHHHHHHHHH----HHTSCGGG----HHHHHHHHHHHHTSTTC-TTCCCCC
T ss_pred HHHHHHHHHHHHHhcCHH-HHHHHHHHHH----HhccCcHH----HHHHHHHHHHHHCCCCC-CcccCcC
Confidence 456778888876543333 3555566766 55555554 55566788999998765 4567764
No 14
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.06 E-value=82 Score=23.24 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCcccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQT 199 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~~ 199 (202)
...+.-|.++|..-.-++ ++.=+.+||+ |.++..+ +-+.+.-..|+..++++.+ +..||+..
T Consensus 26 ~~g~~~F~~FL~~e~~~E-nl~Fw~~ve~----yk~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evNi~~ 87 (149)
T 2dlr_A 26 PEGVKRFREFLKKEFSEE-NVLFWLACED----FKKMQDK---TQMQEKAKEIYMTFLSSKA-SSQVNVEG 87 (149)
T ss_dssp HHHHHHHHHHHHHHTCTH-HHHHHHHHHH----HHHHCCH---HHHHHHHHHHHTTTSSTTC-SSCCCCSC
T ss_pred HHHHHHHHHHHHHhcCHH-HHHHHHHHHH----HhccCCH---HHHHHHHHHHHHHHcCCCC-CccccCCH
Confidence 456778888887655444 3666677776 3333332 3455667889999998765 45688753
No 15
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=25.47 E-value=38 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.285 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHhhC
Q 044715 166 KCPVFIDLVCRFYGELCKDLF 186 (202)
Q Consensus 166 nSPvf~dLV~rFF~ElC~dlF 186 (202)
+||.|.+++..+..++|.+|=
T Consensus 32 ks~~y~~f~~~lir~l~~~L~ 52 (80)
T 3bpj_A 32 KSLYYASFLEVLVRDVCISLE 52 (80)
T ss_dssp TSTTHHHHHHHHHHHHHTTSC
T ss_pred CChhHHHHHHHHHHHHHccCC
Confidence 689999999999999998863
No 16
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=24.66 E-value=1e+02 Score=22.88 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCcccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQT 199 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~~ 199 (202)
...+.-|.++|..-.-++ ++.=+.+||+ |.....+ +-+...-..|+..++++.+ +..||+..
T Consensus 42 p~g~~~F~~FL~~e~~~E-nl~Fw~~ve~----yk~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evNi~~ 103 (153)
T 2ihb_B 42 PEGVKRFREFLKKEFSEE-NVLFWLACED----FKKMQDK---TQMQEKAKEIYMTFLSSKA-SSQVNVEG 103 (153)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHHHH----HHHCCCH---HHHHHHHHHHHHHHTSTTC-TTCCCCCC
T ss_pred HHHHHHHHHHHHHhcCHH-HHHHHHHHHH----HcCCCCH---HHHHHHHHHHHHHHcCCCC-CccCCCCH
Confidence 456778888877544444 3555667766 4444443 3455667789999998765 45687754
No 17
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=22.65 E-value=1.4e+02 Score=22.05 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQ 198 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~ 198 (202)
...+.-|.++|..-.-++ ++.=+.+||+ |.....+ +-+...-..|+..++++.+ +..||+.
T Consensus 22 p~g~~~F~~FL~~e~s~E-nl~Fw~~ve~----yk~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evNi~ 82 (151)
T 2jm5_A 22 RDGLEAFTRFLKTEFSEE-NIEFWIACED----FKKSKGP---QQIHLKAKAIYEKFIQTDA-PKEVNLD 82 (151)
T ss_dssp HHHHHHHHHHHHHTTCTT-THHHHHHHHH----HHTCCCH---HHHHHHHHHHHHHTTCSSS-SSCCCCC
T ss_pred hHHHHHHHHHHHHhCCHH-HHHHHHHHHH----HhccCCH---HHHHHHHHHHHHHHccCcc-hhhcCCC
Confidence 456778888886544433 3666678877 5555443 3345667889999998765 4567764
No 18
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=22.54 E-value=1.2e+02 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 044715 141 EMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKD 184 (202)
Q Consensus 141 EMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~d 184 (202)
++|.+.|+..+..||=+-..-+.+++-....+.+.+||++|=.|
T Consensus 21 ~iL~~~~~~~~F~dL~~eV~~~~~~s~ee~~~~iaqfYTdLn~D 64 (99)
T 2krc_A 21 ELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNID 64 (99)
T ss_dssp HHHHHHCSCEEHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHTC
T ss_pred HHHHHcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 45556677777777655555667777666678899999998654
No 19
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=22.21 E-value=1.1e+02 Score=23.10 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQ 198 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~ 198 (202)
...++.|.++|..-.-++ ++.=+.+||+ |.+...+ +-+.+.-..|+..++++.+ +..||+.
T Consensus 44 p~g~~~F~~FL~~e~s~E-nl~Fw~~ve~----yk~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evNi~ 104 (158)
T 1zv4_X 44 PAGRNLFREFLRTEYSEE-NLLFWLACED----LKKEQNK---KVIEEKARMIYEDYISILS-PKEVSLD 104 (158)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHHHH----HHHCCSH---HHHHHHHHHHHHHHTCCC--CCCCCCC
T ss_pred HHHHHHHHHHHHHccCHh-HHHHHHHHHH----HHhcCCH---HHHHHHHHHHHHHHCCCCC-CceeecC
Confidence 456788888877644444 3666677776 4444332 3445667889999998765 5567764
No 20
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=21.80 E-value=36 Score=22.03 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 151 DLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 151 dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
|-.-.|||-.||..|. .|+.||+|
T Consensus 10 ~dA~~Eela~Y~~~Lr--hYiNlvTR 33 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQ--QYLNVVTR 33 (36)
T ss_dssp TTSCHHHHHHHHHHHH--HHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH--HHHHHHhc
Confidence 3456899999999986 67887754
No 21
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=20.96 E-value=32 Score=22.32 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHH
Q 044715 151 DLTDVEELLYCWKNLKCPVFIDLVCR 176 (202)
Q Consensus 151 dl~DVEELL~cy~~LnSPvf~dLV~r 176 (202)
|-...|||-+||..|+ .|+.||+|
T Consensus 10 ~~a~pEela~Y~~~Lr--~YinlvTR 33 (37)
T 1f8p_A 10 EDAPAEDLARYYSALR--HYINLITR 33 (37)
T ss_dssp SSCTTTTHHHHHHHHH--HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HHHHHhcc
Confidence 4467899999999997 68888875
No 22
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=20.58 E-value=1e+02 Score=22.44 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQ 198 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~ 198 (202)
....+-|.++|..-.-++ ++.=+.+||+ |.....+ +-+..--..|+..++++.+ +..||+.
T Consensus 29 p~g~~~F~~Fl~~e~s~E-nl~Fw~~ve~----~k~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evNi~ 89 (137)
T 3c7l_A 29 KNGVAAFHAFLKTEFSEE-NLEFWLACEE----FKKIRSA---TKLASRAHHIFDEYIRSEA-PKEVNID 89 (137)
T ss_dssp HHHHHHHHHHHHTTTCHH-HHHHHHHHHH----HTTCCCH---HHHHHHHHHHHHHHTSTTC-TTCCCCC
T ss_pred hHHHHHHHHHHHHhCCHH-HHHHHHHHHH----HhccCCH---HHHHHHHHHHHHHHCCCCC-CccCCCC
Confidence 455677777776433333 2444556655 4555443 3455667888999998765 4567764
No 23
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=20.43 E-value=1.2e+02 Score=22.40 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 044715 129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQ 198 (202)
Q Consensus 129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs~~~~~~~v~~~ 198 (202)
...+..|..+|..-.-++ ++.=+.+||+ |.....+ +-+..--..|+..++++.+ +..||+.
T Consensus 31 p~~~~~F~~Fl~~e~s~E-nl~Fw~~ve~----~k~~~~~---~~~~~~a~~Iy~~yi~~~s-~~evni~ 91 (152)
T 1cmz_A 31 PAGRSVFRAFLRTEYSEE-NMLFWLACEE----LKAEANQ---HVVDEKARLIYEDYVSILS-PKEVSLD 91 (152)
T ss_dssp HHHHHHHHHHHHHHTCCH-HHHHHHHHHH----GGGTCCS---HHHHHHHHHHHHHTTTCSS-SCCCSCC
T ss_pred hHHHHHHHHHHHHhcChh-hHHHHHHHHH----HHhcCCH---HHHHHHHHHHHHHHcCCCC-CceeeCC
Confidence 456778888876544333 3555566665 4444433 3345667889999998765 5568864
Done!