BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044718
MASAYNDHENGIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVH
ENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKE
NCRTDKANELSISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCD
RFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL

High Scoring Gene Products

Symbol, full name Information P value
AT1G01150 protein from Arabidopsis thaliana 2.9e-12
AT1G14770 protein from Arabidopsis thaliana 4.5e-09
TRFL10
AT5G03780
protein from Arabidopsis thaliana 1.1e-07
AT1G68030 protein from Arabidopsis thaliana 1.2e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044718
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035372 - symbol:AT1G01150 species:3702 "Arabi...   172  2.9e-12   1
TAIR|locus:2006792 - symbol:AT1G14770 species:3702 "Arabi...   155  4.5e-09   1
TAIR|locus:2144568 - symbol:TRFL10 "TRF-like 10" species:...   144  1.1e-07   1
TAIR|locus:2200201 - symbol:AT1G68030 species:3702 "Arabi...   125  1.2e-05   1


>TAIR|locus:2035372 [details] [associations]
            symbol:AT1G01150 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR001005
            InterPro:IPR009057 SMART:SM00717 EMBL:CP002684 GO:GO:0003677
            GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.40.10
            InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
            InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR017877
            PROSITE:PS50090 IPI:IPI00545609 RefSeq:NP_171623.1 UniGene:At.51444
            ProteinModelPortal:F4HQJ2 SMR:F4HQJ2 EnsemblPlants:AT1G01150.1
            GeneID:839294 KEGG:ath:AT1G01150 OMA:HENLHQL Uniprot:F4HQJ2
        Length = 345

 Score = 172 (65.6 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 38/120 (31%), Positives = 63/120 (52%)

Query:    21 GRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPY 80
             G S  F   + L E  CI C+  D+ ++ CS + C ++VH  C+   ++ +D   FY PY
Sbjct:    71 GTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVE--LDCEDPATFYCPY 128

Query:    81 CWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGD--KKKENCRTDKANELSIS-SLHE 137
             CW+K +  R+  LR + +   K L  +  S+  SGD    +EN + +  ++ S+   LHE
Sbjct:   129 CWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHE 188


>TAIR|locus:2006792 [details] [associations]
            symbol:AT1G14770 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 Gene3D:3.30.40.10
            InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
            InterPro:IPR019786 PROSITE:PS01359 EMBL:AC006917 EMBL:BT008587
            EMBL:AK118871 IPI:IPI00543450 RefSeq:NP_172930.1 RefSeq:NP_973829.1
            UniGene:At.41953 ProteinModelPortal:Q9LQV4 SMR:Q9LQV4
            EnsemblPlants:AT1G14770.1 EnsemblPlants:AT1G14770.2 GeneID:838042
            KEGG:ath:AT1G14770 TAIR:At1g14770 InParanoid:Q9LQV4 OMA:DEYSSRP
            PhylomeDB:Q9LQV4 ProtClustDB:CLSN2682046 ArrayExpress:Q9LQV4
            Genevestigator:Q9LQV4 Uniprot:Q9LQV4
        Length = 429

 Score = 155 (59.6 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 31/75 (41%), Positives = 41/75 (54%)

Query:    34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKEL 93
             E  C KC + +  LL+CS+S C   VH+ CL+C V  D+ GNF  P CWY    M   E 
Sbjct:   345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query:    94 RKKAMETKKKLA-CF 107
             +K     K++L  CF
Sbjct:   404 QKLISCAKRRLVKCF 418


>TAIR|locus:2144568 [details] [associations]
            symbol:TRFL10 "TRF-like 10" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0009751
            "response to salicylic acid stimulus" evidence=IEP] [GO:0006302
            "double-strand break repair" evidence=RCA] [GO:0010332 "response to
            gamma radiation" evidence=RCA] InterPro:IPR001005
            InterPro:IPR009057 SMART:SM00717 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003682 GO:GO:0009751
            Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017877
            PROSITE:PS50090 InterPro:IPR025999 Pfam:PF13325 EMBL:AB493735
            IPI:IPI00535579 RefSeq:NP_195998.2 UniGene:At.33228
            ProteinModelPortal:C0SVN2 SMR:C0SVN2 PRIDE:C0SVN2
            EnsemblPlants:AT5G03780.1 GeneID:831726 KEGG:ath:AT5G03780
            TAIR:At5g03780 eggNOG:NOG257926 HOGENOM:HOG000200791 OMA:DDEANEN
            PhylomeDB:C0SVN2 ProtClustDB:CLSN2714704 Genevestigator:C0SVN2
            Uniprot:C0SVN2
        Length = 420

 Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 40/133 (30%), Positives = 61/133 (45%)

Query:    31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCL---------SCGVEFDDVGNFYRPYC 81
             LL+ + CI C   DE +  C    CL+S H  CL         S     +DV N + PYC
Sbjct:    67 LLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYADLGSTSSSSSSSSEDVSNPFCPYC 126

Query:    82 WYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANE---LSISSLHEE 138
             W K   +++K LR+K +E +K +  ++D +  S D+       +  N+     I S HE 
Sbjct:   127 WLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDEDITLSGDEIGNQEQSTDIVSDHEL 186

Query:   139 RNYGYGGCEDRMD 151
             +     GC  + D
Sbjct:   187 QGEK-DGCSSKPD 198


>TAIR|locus:2200201 [details] [associations]
            symbol:AT1G68030 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR001965 SMART:SM00249 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC012563
            Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
            SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 IPI:IPI00530051
            PIR:D96703 RefSeq:NP_176970.1 UniGene:At.52429
            ProteinModelPortal:Q9C9W7 SMR:Q9C9W7 EnsemblPlants:AT1G68030.1
            GeneID:843131 KEGG:ath:AT1G68030 TAIR:At1g68030 eggNOG:NOG312375
            HOGENOM:HOG000152231 InParanoid:Q9C9W7 OMA:SSESCEY PhylomeDB:Q9C9W7
            ProtClustDB:CLSN2914489 Genevestigator:Q9C9W7 Uniprot:Q9C9W7
        Length = 314

 Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%)

Query:    37 CIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKK 96
             C+ C +    LL CS  GC + VH+ CL     + D G+FY   C   C      + + +
Sbjct:   229 CVNC-KESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDE 287

Query:    97 AMETKKKLACFIDSKSFSGDKK 118
               + K+KL  F+   S    KK
Sbjct:   288 VAKAKRKLVSFLRLMSEVNKKK 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       236   0.00089  113 3  11 23  0.48    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  208 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.72u 0.12s 24.84t   Elapsed:  00:00:01
  Total cpu time:  24.72u 0.12s 24.84t   Elapsed:  00:00:01
  Start:  Fri May 10 07:04:31 2013   End:  Fri May 10 07:04:32 2013

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