BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044718
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 965

 Score = 28.9 bits (63), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 56  LISVHENCLSCGVEFDDVGNFYRPYCWY 83
           + ++H   LS G EF+DVG + RP  WY
Sbjct: 576 ITAMHSWHLSHGAEFEDVGQWKRP--WY 601


>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 965

 Score = 28.5 bits (62), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 56  LISVHENCLSCGVEFDDVGNFYRPYCWY 83
           + + H   LS G EF+DVG + RP  WY
Sbjct: 576 ITAXHSWHLSHGAEFEDVGQWKRP--WY 601


>pdb|3QIL|A Chain A, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|B Chain B, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|C Chain C, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|D Chain D, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|E Chain E, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|F Chain F, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|G Chain G, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|H Chain H, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|I Chain I, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|J Chain J, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|K Chain K, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|L Chain L, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|M Chain M, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|N Chain N, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|O Chain O, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|P Chain P, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|Q Chain Q, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|R Chain R, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|S Chain S, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|T Chain T, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|U Chain U, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|V Chain V, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|W Chain W, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
 pdb|3QIL|X Chain X, Crystal Structure Analysis Of The Clathrin Trimerization
           Domain
          Length = 125

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 89  RTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCED 148
           R   + K+++E  KK + + D+  ++ + K     T+ A EL    L EE+   +G C  
Sbjct: 17  RGSHMWKQSVELAKKDSLYKDAMQYASESKD----TELAEELLQWFLQEEKRECFGACLF 72

Query: 149 RMDDVQVEDLIVEVEF 164
              D+   D+++E+ +
Sbjct: 73  TCYDLLRPDVVLELAW 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,698
Number of Sequences: 62578
Number of extensions: 313100
Number of successful extensions: 475
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)