Query 044718
Match_columns 236
No_of_seqs 46 out of 48
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 10:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l5u_A Chromodomain-helicase-D 99.3 1.5E-12 5E-17 91.5 4.3 56 26-84 3-58 (61)
2 1xwh_A Autoimmune regulator; P 99.3 1.8E-12 6.1E-17 91.9 3.7 52 31-85 5-56 (66)
3 1mm2_A MI2-beta; PHD, zinc fin 99.3 2.8E-12 9.6E-17 90.1 4.0 52 31-85 6-57 (61)
4 2yql_A PHD finger protein 21A; 99.3 2.7E-12 9.4E-17 88.3 3.7 50 30-82 5-54 (56)
5 2puy_A PHD finger protein 21A; 99.3 2.1E-12 7.1E-17 89.7 3.0 50 32-84 3-52 (60)
6 2l43_A N-teminal domain from h 99.2 3E-12 1E-16 96.0 3.6 65 17-86 8-77 (88)
7 1fp0_A KAP-1 corepressor; PHD 99.2 4.7E-12 1.6E-16 96.6 4.6 55 28-85 19-73 (88)
8 2lri_C Autoimmune regulator; Z 99.2 7.1E-12 2.4E-16 90.2 2.9 51 31-84 9-59 (66)
9 2yt5_A Metal-response element- 99.2 4E-12 1.4E-16 88.8 1.5 54 31-87 3-64 (66)
10 3u5n_A E3 ubiquitin-protein li 99.2 8.5E-12 2.9E-16 103.4 3.6 53 30-85 3-55 (207)
11 3o36_A Transcription intermedi 99.2 1.5E-11 5.2E-16 99.8 3.7 51 32-85 2-52 (184)
12 2ku3_A Bromodomain-containing 99.1 1.4E-11 5E-16 89.6 2.9 54 28-86 10-68 (71)
13 2e6r_A Jumonji/ARID domain-con 99.1 3.1E-11 1E-15 91.0 4.5 56 26-83 8-65 (92)
14 1wev_A Riken cDNA 1110020M19; 99.1 2.9E-11 9.8E-16 90.4 3.2 51 33-86 15-74 (88)
15 2ro1_A Transcription intermedi 99.0 1.3E-10 4.5E-15 96.2 2.8 48 34-84 2-49 (189)
16 2lbm_A Transcriptional regulat 99.0 3.5E-10 1.2E-14 92.4 4.5 80 23-109 52-138 (142)
17 4gne_A Histone-lysine N-methyl 99.0 4E-10 1.4E-14 88.0 4.1 51 30-83 11-61 (107)
18 1f62_A Transcription factor WS 98.9 2E-10 6.7E-15 77.0 1.9 45 36-82 2-48 (51)
19 2e6s_A E3 ubiquitin-protein li 98.9 1.5E-09 5E-14 80.1 4.1 45 35-82 27-75 (77)
20 3asl_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 78.0 2.7 45 36-83 20-68 (70)
21 2k16_A Transcription initiatio 98.8 1.7E-09 5.8E-14 77.2 2.3 56 27-84 11-68 (75)
22 1wen_A Inhibitor of growth fam 98.8 5.8E-09 2E-13 75.7 5.1 59 23-85 5-66 (71)
23 2kwj_A Zinc finger protein DPF 98.7 4.8E-09 1.6E-13 80.7 3.1 46 35-83 59-107 (114)
24 3shb_A E3 ubiquitin-protein li 98.7 6.3E-09 2.1E-13 77.0 3.2 45 36-82 28-75 (77)
25 3v43_A Histone acetyltransfera 98.7 7.2E-09 2.5E-13 79.3 3.2 46 34-82 61-110 (112)
26 3c6w_A P28ING5, inhibitor of g 98.7 6.4E-09 2.2E-13 73.1 2.3 52 29-84 4-58 (59)
27 3ask_A E3 ubiquitin-protein li 98.6 1.1E-08 3.6E-13 89.2 3.2 46 34-82 174-223 (226)
28 3ql9_A Transcriptional regulat 98.6 1.1E-08 3.6E-13 82.7 2.8 66 24-93 47-119 (129)
29 2ysm_A Myeloid/lymphoid or mix 98.6 1.5E-08 5.2E-13 76.6 3.3 48 32-82 5-55 (111)
30 2vnf_A ING 4, P29ING4, inhibit 98.6 1.1E-08 3.8E-13 71.7 2.2 52 29-84 5-59 (60)
31 2ysm_A Myeloid/lymphoid or mix 98.6 1.5E-08 5.2E-13 76.6 2.3 49 35-85 55-105 (111)
32 2g6q_A Inhibitor of growth pro 98.5 3.1E-08 1.1E-12 70.3 2.3 54 28-85 5-61 (62)
33 2lv9_A Histone-lysine N-methyl 98.5 2.4E-07 8.1E-12 70.2 7.1 46 36-85 32-77 (98)
34 1weu_A Inhibitor of growth fam 98.4 1.3E-07 4.4E-12 72.2 3.3 53 29-85 31-86 (91)
35 2jmi_A Protein YNG1, ING1 homo 98.2 6.8E-07 2.3E-11 68.1 3.2 52 27-82 19-74 (90)
36 2kwj_A Zinc finger protein DPF 98.1 4.7E-07 1.6E-11 69.6 0.6 46 35-82 2-59 (114)
37 3v43_A Histone acetyltransfera 98.0 6.9E-07 2.4E-11 68.3 0.4 49 32-82 3-62 (112)
38 1x4i_A Inhibitor of growth pro 97.9 5.1E-06 1.7E-10 60.1 3.0 49 32-84 4-55 (70)
39 2ri7_A Nucleosome-remodeling f 97.7 8.9E-06 3E-10 64.9 1.1 53 32-87 6-62 (174)
40 1wee_A PHD finger family prote 97.7 4.8E-05 1.7E-09 54.1 4.5 51 32-85 14-67 (72)
41 1wew_A DNA-binding family prot 97.6 5E-05 1.7E-09 55.1 3.8 52 32-85 14-73 (78)
42 1we9_A PHD finger family prote 97.5 5.4E-05 1.9E-09 52.3 2.9 53 32-86 4-60 (64)
43 2xb1_A Pygopus homolog 2, B-ce 97.4 5.9E-05 2E-09 57.8 2.8 55 34-90 3-67 (105)
44 2rsd_A E3 SUMO-protein ligase 97.2 0.00034 1.2E-08 49.5 4.4 52 33-86 9-67 (68)
45 3o70_A PHD finger protein 13; 96.9 0.00063 2.2E-08 48.7 3.6 49 32-84 17-67 (68)
46 1wem_A Death associated transc 96.9 0.0003 1E-08 50.2 1.8 49 33-84 15-70 (76)
47 1wep_A PHF8; structural genomi 96.9 0.00045 1.5E-08 49.9 2.6 57 24-85 4-64 (79)
48 1wil_A KIAA1045 protein; ring 96.7 0.00024 8.1E-09 55.2 -0.0 49 31-82 12-74 (89)
49 2vpb_A Hpygo1, pygopus homolog 96.7 0.00028 9.4E-09 50.4 -0.0 50 32-82 6-64 (65)
50 2kgg_A Histone demethylase jar 96.2 0.0011 3.7E-08 44.8 0.8 46 36-82 4-52 (52)
51 3lqh_A Histone-lysine N-methyl 95.3 0.0074 2.5E-07 50.5 2.5 52 35-88 3-67 (183)
52 3o7a_A PHD finger protein 13 v 95.1 0.014 4.9E-07 39.1 2.9 40 40-82 9-50 (52)
53 3kqi_A GRC5, PHD finger protei 94.1 0.012 4.3E-07 42.0 0.7 47 35-84 11-61 (75)
54 4bbq_A Lysine-specific demethy 93.3 0.033 1.1E-06 41.7 1.9 35 47-83 75-113 (117)
55 1vyx_A ORF K3, K3RING; zinc-bi 93.0 0.0059 2E-07 42.3 -2.5 52 32-85 4-57 (60)
56 2d8s_A Cellular modulator of i 92.6 0.03 1E-06 40.6 0.8 54 31-86 12-69 (80)
57 4gne_A Histone-lysine N-methyl 92.4 0.071 2.4E-06 41.4 2.7 41 34-78 58-98 (107)
58 3kv5_D JMJC domain-containing 92.2 0.029 9.8E-07 52.8 0.2 49 33-84 36-88 (488)
59 3a1b_A DNA (cytosine-5)-methyl 92.1 0.039 1.3E-06 46.1 0.9 59 24-83 69-133 (159)
60 2pv0_B DNA (cytosine-5)-methyl 89.7 0.07 2.4E-06 49.7 0.3 60 24-84 83-148 (386)
61 3pur_A Lysine-specific demethy 88.6 0.2 6.9E-06 48.4 2.6 36 47-84 58-94 (528)
62 3kv4_A PHD finger protein 8; e 84.9 0.16 5.5E-06 47.6 -0.3 45 39-86 9-58 (447)
63 2d8v_A Zinc finger FYVE domain 84.5 0.56 1.9E-05 34.7 2.5 32 32-84 6-37 (67)
64 2dj7_A Actin-binding LIM prote 84.0 0.9 3.1E-05 31.9 3.4 53 28-85 9-72 (80)
65 2co8_A NEDD9 interacting prote 80.3 2 6.8E-05 30.0 4.0 52 28-84 9-74 (82)
66 2ct0_A Non-SMC element 1 homol 77.0 1.2 4.1E-05 32.2 2.1 48 33-84 14-61 (74)
67 1x62_A C-terminal LIM domain p 76.2 2.4 8.3E-05 29.1 3.4 50 32-85 13-72 (79)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 75.2 0.74 2.5E-05 33.4 0.5 35 47-83 2-43 (140)
69 2lq6_A Bromodomain-containing 74.4 1.1 3.9E-05 33.1 1.4 31 34-65 17-49 (87)
70 2l4z_A DNA endonuclease RBBP8, 73.0 5.3 0.00018 30.4 4.9 53 28-84 55-120 (123)
71 2d8y_A Eplin protein; LIM doma 70.8 5.9 0.0002 27.8 4.4 55 26-84 7-72 (91)
72 2dar_A PDZ and LIM domain prot 67.3 8.4 0.00029 27.0 4.6 50 32-85 23-82 (90)
73 2yur_A Retinoblastoma-binding 67.2 2.1 7.1E-05 29.1 1.3 54 26-83 7-60 (74)
74 2ect_A Ring finger protein 126 66.9 5 0.00017 27.0 3.2 49 29-84 10-61 (78)
75 2ecj_A Tripartite motif-contai 66.8 2.2 7.4E-05 27.0 1.3 48 28-81 9-58 (58)
76 1a7i_A QCRP2 (LIM1); LIM domai 63.4 2.9 9.9E-05 28.7 1.5 48 33-85 6-65 (81)
77 2ea6_A Ring finger protein 4; 62.2 2.3 8E-05 27.5 0.8 51 26-83 7-64 (69)
78 1g47_A Pinch protein; LIM doma 59.9 5.5 0.00019 26.7 2.4 51 30-84 7-69 (77)
79 2jtn_A LIM domain-binding prot 59.8 11 0.00038 29.7 4.5 53 29-85 55-117 (182)
80 2l0b_A E3 ubiquitin-protein li 58.1 7.7 0.00026 27.4 3.0 47 31-84 37-86 (91)
81 1x64_A Alpha-actinin-2 associa 57.6 6.8 0.00023 27.4 2.6 52 30-85 21-82 (89)
82 2egp_A Tripartite motif-contai 56.8 3.9 0.00013 27.3 1.2 52 29-85 7-63 (79)
83 1iym_A EL5; ring-H2 finger, ub 56.0 4.6 0.00016 25.3 1.4 46 33-84 4-52 (55)
84 2ecw_A Tripartite motif-contai 55.4 4.4 0.00015 27.1 1.2 54 26-84 11-68 (85)
85 2ysl_A Tripartite motif-contai 53.2 8.2 0.00028 25.4 2.3 53 28-84 14-66 (73)
86 2kiz_A E3 ubiquitin-protein li 53.1 3.5 0.00012 27.1 0.5 48 30-84 10-60 (69)
87 2cu8_A Cysteine-rich protein 2 51.8 12 0.0004 25.3 2.9 47 33-84 8-67 (76)
88 2k1p_A Zinc finger RAN-binding 51.5 4.4 0.00015 25.3 0.7 12 73-84 4-15 (33)
89 2ecn_A Ring finger protein 141 51.4 6 0.00021 26.0 1.4 47 29-84 10-57 (70)
90 2ea5_A Cell growth regulator w 50.1 6.6 0.00023 26.9 1.5 42 30-84 11-55 (68)
91 2lk0_A RNA-binding protein 5; 49.9 3.8 0.00013 25.4 0.2 12 73-84 3-14 (32)
92 1wyh_A SLIM 2, skeletal muscle 48.6 7.7 0.00026 25.6 1.6 48 33-84 4-63 (72)
93 1x4j_A Ring finger protein 38; 46.7 4.3 0.00015 27.3 0.1 46 31-83 20-68 (75)
94 1x4l_A Skeletal muscle LIM-pro 46.1 14 0.00048 24.5 2.6 48 33-84 4-65 (72)
95 2ckl_B Ubiquitin ligase protei 44.5 3.3 0.00011 32.0 -0.9 52 29-85 49-100 (165)
96 1t1h_A Gspef-atpub14, armadill 43.8 6.7 0.00023 26.3 0.7 50 29-84 3-52 (78)
97 4a0k_B E3 ubiquitin-protein li 43.5 5.7 0.00019 30.8 0.3 52 33-88 47-113 (117)
98 1v87_A Deltex protein 2; ring- 43.3 5.2 0.00018 28.8 0.1 31 54-84 60-91 (114)
99 3l11_A E3 ubiquitin-protein li 43.1 8.4 0.00029 27.9 1.2 50 30-87 11-62 (115)
100 2ep4_A Ring finger protein 24; 43.1 8.4 0.00029 25.6 1.1 49 29-84 10-61 (74)
101 2ysj_A Tripartite motif-contai 43.1 10 0.00036 24.4 1.6 48 28-81 14-63 (63)
102 3kzq_A Putative uncharacterize 42.6 10 0.00036 29.6 1.7 13 73-85 8-20 (208)
103 3rsn_A SET1/ASH2 histone methy 41.7 14 0.00049 31.1 2.5 45 36-83 7-58 (177)
104 2djb_A Polycomb group ring fin 40.7 7.3 0.00025 26.0 0.5 52 27-84 8-59 (72)
105 2d8t_A Dactylidin, ring finger 40.5 20 0.0007 23.7 2.7 49 31-86 12-60 (71)
106 3nw0_A Non-structural maintena 40.3 9.6 0.00033 32.4 1.3 48 34-85 180-227 (238)
107 3ztg_A E3 ubiquitin-protein li 39.3 4.6 0.00016 28.0 -0.7 51 28-84 7-59 (92)
108 2ecv_A Tripartite motif-contai 37.4 12 0.00041 24.8 1.2 52 28-84 13-68 (85)
109 2d9g_A YY1-associated factor 2 37.3 13 0.00045 25.4 1.4 19 67-85 3-21 (53)
110 2csy_A Zinc finger protein 183 37.0 12 0.00041 25.4 1.1 49 29-84 10-58 (81)
111 1b8t_A Protein (CRP1); LIM dom 36.5 13 0.00046 29.4 1.5 50 31-85 4-65 (192)
112 1x68_A FHL5 protein; four-and- 36.2 17 0.00058 24.5 1.8 48 34-85 5-66 (76)
113 2cup_A Skeletal muscle LIM-pro 35.4 21 0.00072 25.0 2.3 49 32-84 3-63 (101)
114 2in3_A Hypothetical protein; D 35.1 13 0.00045 28.6 1.2 19 68-86 8-26 (216)
115 2ct2_A Tripartite motif protei 35.0 11 0.00038 25.4 0.7 55 27-84 8-65 (88)
116 3k1l_B Fancl; UBC, ring, RWD, 34.9 16 0.00056 34.3 2.0 51 33-85 307-371 (381)
117 1x61_A Thyroid receptor intera 34.6 11 0.00038 24.9 0.7 48 33-84 4-63 (72)
118 2ecm_A Ring finger and CHY zin 34.3 8.6 0.0003 23.9 0.0 46 33-84 4-52 (55)
119 3bci_A Disulfide bond protein 32.6 5.5 0.00019 30.3 -1.3 18 67-84 12-29 (186)
120 1nyp_A Pinch protein; LIM doma 32.0 10 0.00035 24.8 0.1 47 34-84 5-61 (66)
121 1iml_A CRIP, cysteine rich int 32.0 16 0.00054 24.6 1.1 44 36-84 2-58 (76)
122 2d8z_A Four and A half LIM dom 31.5 14 0.00049 24.2 0.8 47 34-84 5-61 (70)
123 2cur_A Skeletal muscle LIM-pro 31.3 14 0.00048 24.3 0.7 48 33-84 4-61 (69)
124 1bor_A Transcription factor PM 30.4 26 0.0009 22.6 1.9 40 33-84 5-46 (56)
125 2ecl_A Ring-box protein 2; RNF 29.5 18 0.00061 25.1 1.0 46 33-84 14-73 (81)
126 1x4k_A Skeletal muscle LIM-pro 29.4 31 0.0011 22.6 2.2 47 34-84 5-63 (72)
127 4dvc_A Thiol:disulfide interch 28.8 7 0.00024 28.8 -1.2 15 68-82 23-37 (184)
128 2ecy_A TNF receptor-associated 28.5 8.4 0.00029 25.2 -0.8 48 29-84 10-59 (66)
129 1x3h_A Leupaxin; paxillin fami 28.0 19 0.00066 24.2 1.0 47 35-85 16-72 (80)
130 2r25_A Phosphorelay intermedia 27.7 60 0.002 26.9 4.1 30 82-111 137-166 (167)
131 2imf_A HCCA isomerase, 2-hydro 27.6 22 0.00077 27.5 1.4 12 74-85 7-18 (203)
132 2d8x_A Protein pinch; LIM doma 27.5 13 0.00046 24.5 0.1 48 33-85 4-62 (70)
133 2egq_A FHL1 protein; LIM domai 27.5 30 0.001 23.0 1.9 45 34-82 15-74 (77)
134 1faq_A RAF-1; transferase, ser 27.1 34 0.0012 21.8 2.0 31 34-67 14-45 (52)
135 2cor_A Pinch protein; LIM doma 26.8 14 0.00048 25.4 0.1 48 33-84 14-70 (79)
136 4esj_A Type-2 restriction enzy 26.5 20 0.00067 32.2 1.0 13 72-84 53-65 (257)
137 1r4w_A Glutathione S-transfera 25.4 14 0.00049 29.3 -0.1 16 69-84 7-22 (226)
138 1wig_A KIAA1808 protein; LIM d 25.0 19 0.00066 24.3 0.5 46 35-84 6-62 (73)
139 1v5n_A PDI-like hypothetical p 25.0 22 0.00075 26.1 0.8 32 35-68 48-80 (89)
140 3rpp_A Glutathione S-transfera 24.9 15 0.00051 30.0 -0.1 15 71-85 9-23 (234)
141 1n0z_A ZNF265; zinc finger, RN 24.9 21 0.00073 23.7 0.7 12 72-83 11-24 (45)
142 3f4s_A Alpha-DSBA1, putative u 24.6 15 0.00053 30.0 -0.0 17 67-83 40-56 (226)
143 2ehe_A Four and A half LIM dom 24.6 17 0.00058 24.7 0.2 49 34-86 15-75 (82)
144 3uej_A NPKC-delta, protein kin 24.5 31 0.001 23.3 1.5 32 32-66 18-54 (65)
145 2znm_A Thiol:disulfide interch 24.3 19 0.00066 27.2 0.5 18 68-85 24-41 (195)
146 1x6a_A LIMK-2, LIM domain kina 23.5 29 0.00098 23.5 1.2 47 35-85 16-74 (81)
147 3c7m_A Thiol:disulfide interch 23.2 16 0.00055 27.3 -0.2 12 72-83 23-34 (195)
148 3fz5_A Possible 2-hydroxychrom 23.1 25 0.00084 27.6 0.9 13 73-85 10-22 (202)
149 2dlo_A Thyroid receptor-intera 22.8 26 0.0009 23.7 0.9 49 33-85 14-73 (81)
150 1e4u_A Transcriptional repress 21.5 16 0.00056 25.8 -0.4 48 31-84 8-59 (78)
151 1z6m_A Conserved hypothetical 21.5 18 0.00062 26.9 -0.2 16 68-83 29-44 (175)
152 2rem_A Disulfide oxidoreductas 21.4 18 0.00063 27.1 -0.2 16 69-84 28-43 (193)
153 1chc_A Equine herpes virus-1 r 21.0 15 0.00052 23.8 -0.6 46 33-84 4-49 (68)
154 3gha_A Disulfide bond formatio 21.0 11 0.00038 29.9 -1.5 16 67-82 30-45 (202)
155 1x4u_A Zinc finger, FYVE domai 20.9 81 0.0028 22.4 3.2 18 24-43 6-23 (84)
156 3f6q_B LIM and senescent cell 20.8 20 0.00067 23.2 -0.1 47 33-83 10-68 (72)
157 2cuq_A Four and A half LIM dom 20.5 29 0.001 23.3 0.7 48 34-85 15-72 (80)
158 4hn5_A Glucocorticoid receptor 20.1 24 0.00081 27.7 0.2 54 32-87 27-93 (117)
159 1ptq_A Protein kinase C delta 20.1 34 0.0012 21.6 0.9 31 34-67 11-46 (50)
No 1
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=91.52 Aligned_cols=56 Identities=21% Similarity=0.465 Sum_probs=48.9
Q ss_pred CCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 26 FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
+...+..+++.|.+|+..|+ ||.|+ +|+.+||..|++.+++..+.|+||||.|..+
T Consensus 3 ~~~~~~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 3 LGSYETDHQDYCEVCQQGGE-IILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSCCSSCCCSSCTTTSCCSS-EEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCcccCCCCCCCccCCCCCc-EEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34445567899999999999 99999 9999999999998777779999999999864
No 2
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.28 E-value=1.8e-12 Score=91.91 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=46.8
Q ss_pred CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
..+++.|.+|+..|+ ||.|+ +|+.+||..|+++++...|.|+||||.|..++
T Consensus 5 ~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDGGE-LICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCCSS-CEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCCCC-EEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 347899999999999 99999 99999999999987777799999999998654
No 3
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.26 E-value=2.8e-12 Score=90.06 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=46.6
Q ss_pred CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
..+++.|.+|+..|+ ||+|+ +|+.+||..|++.+++-.+.|+||||.|..+.
T Consensus 6 d~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGE-LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSS-CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCC-EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 347889999999998 99999 99999999999988777799999999998653
No 4
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.7e-12 Score=88.25 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=45.6
Q ss_pred CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
+..+++.|.+|+..|+ ||.|+ +|+.+||..|++++++..|.|+||||.|.
T Consensus 5 ~~~~~~~C~vC~~~g~-ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSSCCSCSSSCCSSC-CEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred cCCCCCCCccCCCCCe-EEEcC--CCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3457889999999999 99999 99999999999988887899999999996
No 5
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=89.72 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=45.6
Q ss_pred CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+++.|.+|+..|+ ||.|+ +|+.+||..|++++++..|.|+||||.|..+
T Consensus 3 ~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCCSS-CEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCCCc-EEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 36789999999999 99999 9999999999998888789999999999754
No 6
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=96.05 Aligned_cols=65 Identities=20% Similarity=0.430 Sum_probs=50.8
Q ss_pred ccCCCCCCCCCCCCCCCCccceecCCCC-----CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718 17 HSGSGRSGDFMDVDLLEEEPCIKCNRRD-----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 17 ~s~~g~S~~~~~~e~~~qD~CikC~kdG-----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka 86 (236)
|.-+|.+.........+++.|.+|+..| + ||+|+ +|+.+||..|++.+ ..|.|+||||.|..+..
T Consensus 8 Rk~~~~~~g~~~~~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 8 RKSTGGSSGSSQSLIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCTTCSCTTTTTCCCCCCCCCSSCCSSSSCSEEE-EEECS--SSCCCCCHHHHTCS--SCCSSCCCCHHHHHHTT
T ss_pred ccccCCCCCCCCCcCCCCCcCCcCCCCCCCCCCC-EEECC--CCCchhhcccCCCC--ccCCCceECccccCccc
Confidence 3334444444444556889999999887 6 99999 99999999999954 57899999999987643
No 7
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.24 E-value=4.7e-12 Score=96.65 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=48.4
Q ss_pred CCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 28 DVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.....+.+.|.+|+..|+ ||+|+ +||.+||..|+.++++--|.|+||||.|.+..
T Consensus 19 ~~~d~n~~~C~vC~~~g~-LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 19 GTLDDSATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CSSSSSSSCCSSSCSSSC-CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cccCCCCCcCcCcCCCCC-EEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 334457889999999999 99999 99999999999988877799999999998654
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=7.1e-12 Score=90.16 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..+...|.+|+..|+ ||+|+ +|+.+||..|+.+++.-.+.|+||||.|.-.
T Consensus 9 ~~~~~~C~vC~~~~~-ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGTD-VLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCTT-CEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCCe-EEECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 446678999999999 99999 9999999999998888889999999999743
No 9
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.18 E-value=4e-12 Score=88.76 Aligned_cols=54 Identities=17% Similarity=0.428 Sum_probs=46.1
Q ss_pred CCCCccceecCCC-----CCeEEeeCCCCccccccccccCCCCcc---CCCCCcccccchhchHH
Q 044718 31 LLEEEPCIKCNRR-----DENLLVCSQSGCLISVHENCLSCGVEF---DDVGNFYRPYCWYKCEL 87 (236)
Q Consensus 31 ~~~qD~CikC~kd-----Gq~LL~CSg~GCPlsvH~sCLgssp~f---DD~GnFYCPyC~YKkav 87 (236)
..+++.|.+|+.. ++ ||+|+ +|+.+||..|+++++.. .+.|+||||.|..+.+.
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~-ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNE-MVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBC-EEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCC-EEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 4578899999987 67 99999 99999999999976553 38999999999877653
No 10
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.18 E-value=8.5e-12 Score=103.35 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=47.8
Q ss_pred CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
+..+++.|..|+.+|+ ||+|+ +|+.+||..|+.+++.-.|.|+||||.|.-..
T Consensus 3 ~d~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGD-LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCCEE-EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCCc-eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4458899999999999 99999 99999999999988887899999999998654
No 11
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.15 E-value=1.5e-11 Score=99.76 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=46.4
Q ss_pred CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.+++.|.+|+.+|+ ||+|+ +|+.+||..|+.+++...+.|+|+||.|.-+.
T Consensus 2 ~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGE-LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSS-CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCe-eeecC--CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 37789999999999 99999 99999999999988777799999999998654
No 12
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-11 Score=89.62 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=45.8
Q ss_pred CCCCCCCccceecCCCC-----CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718 28 DVDLLEEEPCIKCNRRD-----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdG-----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka 86 (236)
.....+.+.|.+|+..+ + ||+|+ +|+.+||..|++. +..|+|+||||.|..++.
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~~H~~Cl~~--~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGV--PYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSC-EEECS--SSCCEEEHHHHTC--SSCCSSCCCCHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCC-EEECC--CCCCccccccCCC--CcCCCCCcCCccCcCcCc
Confidence 34566889999999876 5 99999 9999999999995 457899999999986543
No 13
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3.1e-11 Score=91.01 Aligned_cols=56 Identities=29% Similarity=0.501 Sum_probs=47.7
Q ss_pred CCCCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 26 FMDVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
-+.....+.+.|.+|+..++ .||+|+ +|+.+||..|+++++...|.|+||||.|..
T Consensus 8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 8 HSSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CchhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44455567889999999874 399999 999999999999888778999999999964
No 14
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.10 E-value=2.9e-11 Score=90.35 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=43.6
Q ss_pred CCccceecCCC-----CCeEEeeCCCCccccccccccCCCCcc----CCCCCcccccchhchH
Q 044718 33 EEEPCIKCNRR-----DENLLVCSQSGCLISVHENCLSCGVEF----DDVGNFYRPYCWYKCE 86 (236)
Q Consensus 33 ~qD~CikC~kd-----Gq~LL~CSg~GCPlsvH~sCLgssp~f----DD~GnFYCPyC~YKka 86 (236)
+.+.|.+|+.. ++ ||+|+ +|+.+||..|+++++.- .+.|+||||.|..+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQ-LVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCC-EEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCc-eEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 56799999987 56 99999 99999999999976652 6899999999986543
No 15
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=96.18 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=44.3
Q ss_pred CccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 34 qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
++.|.+|+.+|+ ||+|+ +|+.+||..|+.+++.-.+.|+|+||.|..+
T Consensus 2 ~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS-CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc-eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 478999999999 99999 9999999999998777779999999999876
No 16
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.97 E-value=3.5e-10 Score=92.43 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCc---c----CCCCCcccccchhchHHHHHHHHHH
Q 044718 23 SGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVE---F----DDVGNFYRPYCWYKCELMRTKELRK 95 (236)
Q Consensus 23 S~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~---f----DD~GnFYCPyC~YKkav~~y~eaKK 95 (236)
++.++-++..+++.|..|+.+|+ ||+|+ .||.+||.+|+..++. + .++|+|+||.|..+.. ..+++
T Consensus 52 ~~~~~~d~Dg~~d~C~vC~~GG~-LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl----~~l~~ 124 (142)
T 2lbm_A 52 SDDISRDSDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL----LDLVT 124 (142)
T ss_dssp HSCCCBCTTSCBCSCSSSCCCSS-EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT----HHHHH
T ss_pred cCCceecCCCCCCeecccCCCCc-EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH----HHHHH
Confidence 45566677789999999999999 99999 9999999999995443 1 4899999999986532 33444
Q ss_pred HHHHHHHHHHhhhc
Q 044718 96 KAMETKKKLACFID 109 (236)
Q Consensus 96 kA~~AKKeLssFL~ 109 (236)
.....=..|..++.
T Consensus 125 ~c~~~~~~~~~~~~ 138 (142)
T 2lbm_A 125 ACNSVFENLEQLLQ 138 (142)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 44444455665554
No 17
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.95 E-value=4e-10 Score=88.02 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=45.0
Q ss_pred CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
...+++.|..|+..|+ ||.|+..+||.+||..|++ +.-.|.|+||||.|.-
T Consensus 11 ~~~~~~~C~~C~~~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCCSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCCCCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 3458899999999998 9999988999999999999 6667899999998863
No 18
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.94 E-value=2e-10 Score=76.96 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=39.1
Q ss_pred cceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 36 PCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 36 ~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
.|.+|+..|+ .||.|+ +|+.+||..|+.+++.-.|.|+||||.|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 5888887663 399999 99999999999987777799999999996
No 19
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=80.10 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=40.3
Q ss_pred ccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccch
Q 044718 35 EPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCW 82 (236)
Q Consensus 35 D~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~ 82 (236)
..|.+|+. .++ ||+|+ +|+.+||..||++++...|+| +||||.|.
T Consensus 27 c~C~vC~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 27 CSCRVCGGKHEPNM-QLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSCSSSCCCCCSTT-EEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCcCcCCcCCCCC-EEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 48899996 455 99999 999999999999888888999 99999996
No 20
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.80 E-value=1.7e-09 Score=78.05 Aligned_cols=45 Identities=27% Similarity=0.595 Sum_probs=39.4
Q ss_pred cceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccchh
Q 044718 36 PCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCWY 83 (236)
Q Consensus 36 ~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~Y 83 (236)
.|.+|+. .|+ ||.|+ +|+.+||..||++++...|+| +||||.|..
T Consensus 20 ~C~~C~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGG-EEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCC-EEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 6778886 445 99999 999999999999888878999 999999973
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.79 E-value=1.7e-09 Score=77.18 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=44.8
Q ss_pred CCCCCCCCccceecCCC--CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 27 MDVDLLEEEPCIKCNRR--DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 27 ~~~e~~~qD~CikC~kd--Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+++..+...|..|+.. |..+|.|+ +|+..||..|++.+..-.+.|.||||.|..+
T Consensus 11 ~~~~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 11 RDEWGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp ECSSSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred ccccCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 34444566789999987 32399999 9999999999998766667799999999754
No 22
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.78 E-value=5.8e-09 Score=75.74 Aligned_cols=59 Identities=27% Similarity=0.543 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCccceecCC--CCCeEEeeCCCCccc-cccccccCCCCccCCCCCcccccchhch
Q 044718 23 SGDFMDVDLLEEEPCIKCNR--RDENLLVCSQSGCLI-SVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 23 S~~~~~~e~~~qD~CikC~k--dGq~LL~CSg~GCPl-svH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
|+.-.+.+..+...| .|+. .|+ +|.|++.+|++ .||..|++ ++-.+.|.||||.|..++
T Consensus 5 ~~~~~~~d~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 5 SSGDMPVDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSSCCCCCTTSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cccccccCCCCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 444555666688899 4999 687 99999555995 99999999 555678999999997654
No 23
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.72 E-value=4.8e-09 Score=80.73 Aligned_cols=46 Identities=33% Similarity=0.702 Sum_probs=40.5
Q ss_pred ccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 35 EPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 35 D~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
..|.+|+. +++ ||.|+ +|+.+||..||++++...|+|+||||.|..
T Consensus 59 ~~C~~C~~~~~~~~-ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQ-LLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTT-EEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCc-eEEcC--CCCccccccccCCCccCCCCCCeECccccc
Confidence 36888887 456 99999 999999999999888888999999999964
No 24
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.71 E-value=6.3e-09 Score=76.96 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=39.2
Q ss_pred cceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCC-cccccch
Q 044718 36 PCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGN-FYRPYCW 82 (236)
Q Consensus 36 ~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~Gn-FYCPyC~ 82 (236)
.|.+|+..++ .||+|+ +|+.+||..||.+++...|.|+ ||||.|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 5777777743 399999 9999999999998888889999 9999996
No 25
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.69 E-value=7.2e-09 Score=79.35 Aligned_cols=46 Identities=20% Similarity=0.471 Sum_probs=40.4
Q ss_pred CccceecCCCC----CeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 34 EEPCIKCNRRD----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 34 qD~CikC~kdG----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
-..|.+|+..| + ||.|+ +|+.+||..||.+++...|+|+||||.|.
T Consensus 61 C~~C~vC~~~~~~~~~-ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 61 CKTCSSCRDQGKNADN-MLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp TCCBTTTCCCCCTTCC-CEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred CCccccccCcCCCccc-eEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 33688888764 5 99999 99999999999988888899999999996
No 26
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.67 E-value=6.4e-09 Score=73.06 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=40.0
Q ss_pred CCCCCCccceecCC--CCCeEEeeCCCCccc-cccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNR--RDENLLVCSQSGCLI-SVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCPl-svH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+..+...| .|++ .|+ ++.|++.+|++ .||.+|++ ++-.+.|.||||.|.-+
T Consensus 4 ~d~~e~~yC-~C~~~~~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 4 RGSNEPTYC-LCHQVSYGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred cCCCCCcEE-ECCCCCCCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 345567788 7998 777 99999555995 99999999 55567899999999754
No 27
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=89.19 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=37.7
Q ss_pred CccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccch
Q 044718 34 EEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCW 82 (236)
Q Consensus 34 qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~ 82 (236)
...|..|+. .++ ||+|+ +|+.+||..||++++.--|.| +||||.|.
T Consensus 174 ~c~C~vC~~~~~~~~-lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 174 VCACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TTSCSSSCCCCC--C-CEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred CCCCcCCCCCCCCCC-eEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 447999998 455 99999 999999999999888877999 99999996
No 28
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.63 E-value=1.1e-08 Score=82.67 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCC------c-cCCCCCcccccchhchHHHHHHHH
Q 044718 24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGV------E-FDDVGNFYRPYCWYKCELMRTKEL 93 (236)
Q Consensus 24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp------~-fDD~GnFYCPyC~YKkav~~y~ea 93 (236)
+.++-++..+++.|..|+.+|+ ||+|+ .||.+||.+|+...+ . .++.|.|+|+.|.- .+...++.+
T Consensus 47 ~~~~~d~Dg~~~~C~vC~dGG~-LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~-~pl~~L~~~ 119 (129)
T 3ql9_A 47 DDISRDSDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP-EPLLDLVTA 119 (129)
T ss_dssp SCCCBCTTSCBSSCTTTCCCSE-EEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC-GGGHHHHHH
T ss_pred cccccCCCCCCCcCeecCCCCe-eEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC-HHHHHHHHH
Confidence 4577777889999999999999 99998 999999999999432 1 24799999999974 444444443
No 29
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.63 E-value=1.5e-08 Score=76.59 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=42.2
Q ss_pred CCCccceecCCCCCeE---EeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 32 LEEEPCIKCNRRDENL---LVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 32 ~~qD~CikC~kdGq~L---L~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
.+++.|.+|+..|+ | |.|+ +|+.+||..||+.+..-.+.+.|+||.|.
T Consensus 5 ~~~~~C~~C~~~g~-~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGD-LLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCC-TTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCC-CcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence 37899999999998 6 9998 99999999999976554567999999996
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.62 E-value=1.1e-08 Score=71.74 Aligned_cols=52 Identities=25% Similarity=0.561 Sum_probs=39.1
Q ss_pred CCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+..+...| .|+. .|+ +|.|++-.|+ -.||..|++ ++-.+.|.||||.|.-+
T Consensus 5 ~d~~e~~~C-~C~~~~~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred cCCCCCCEE-ECCCcCCCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 344567788 6998 677 9999954599 589999999 55667899999999754
No 31
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.58 E-value=1.5e-08 Score=76.58 Aligned_cols=49 Identities=22% Similarity=0.447 Sum_probs=42.7
Q ss_pred ccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 35 EPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 35 D~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
..|.+|+..++ .||.|+ +|+.+||..||.+++...|+|+||||.|...+
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred CcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 37889998875 499999 99999999999988877799999999997653
No 32
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.52 E-value=3.1e-08 Score=70.25 Aligned_cols=54 Identities=28% Similarity=0.604 Sum_probs=40.5
Q ss_pred CCCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhch
Q 044718 28 DVDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 28 ~~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
+.+..+...| .|+. .|+ ++.|++-.|| -.||.+|++ ++-.+.|.||||.|..++
T Consensus 5 ~~d~~e~~yC-~C~~~~~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 5 AIDPNEPTYC-LCNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61 (62)
T ss_dssp -----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTCC
T ss_pred ccCCCCCcEE-ECCCCCCCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccCC
Confidence 3455567788 7999 787 9999955599 799999999 455678999999997553
No 33
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.51 E-value=2.4e-07 Score=70.19 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=35.0
Q ss_pred cceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 36 PCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 36 ~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
+|.++..+|. +|.|+ +|+..||..|++.+..-.+ ..||||.|.-+.
T Consensus 32 iC~~~~~~~~-mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~ 77 (98)
T 2lv9_A 32 ICGFTHDDGY-MICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN 77 (98)
T ss_dssp TTSCCSCSSC-EEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred ECCCccCCCc-EEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence 3555555666 99999 9999999999997644333 589999997543
No 34
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.41 E-value=1.3e-07 Score=72.24 Aligned_cols=53 Identities=25% Similarity=0.551 Sum_probs=41.9
Q ss_pred CCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhch
Q 044718 29 VDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.+..+...| .|+. .|+ ++.|+...|+ -.||..|++ ++-.+.|.||||.|..++
T Consensus 31 ~d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 444566778 8998 777 9999955599 489999999 555678999999997654
No 35
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.20 E-value=6.8e-07 Score=68.13 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=38.6
Q ss_pred CCCCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCccccc-ch
Q 044718 27 MDVDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPY-CW 82 (236)
Q Consensus 27 ~~~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPy-C~ 82 (236)
+.++..+...| .|+. .|+ ++.|+.-.|| -.||..|++ ++-.+.|.||||. |.
T Consensus 19 ~~~~~~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 19 EGNNNQEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp -----CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCCCCCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 33445567788 6996 677 9999966688 589999999 5556789999999 85
No 36
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.11 E-value=4.7e-07 Score=69.61 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=36.7
Q ss_pred ccceecCCCC---------CeEEeeCCCCccccccccccCCCCc---cCCCCCcccccch
Q 044718 35 EPCIKCNRRD---------ENLLVCSQSGCLISVHENCLSCGVE---FDDVGNFYRPYCW 82 (236)
Q Consensus 35 D~CikC~kdG---------q~LL~CSg~GCPlsvH~sCLgssp~---fDD~GnFYCPyC~ 82 (236)
+.|..|..++ ..||.|+ +|+.+||.+||+.++. ..+.+.|+||.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5788886543 1399999 9999999999997543 3478999999995
No 37
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.04 E-value=6.9e-07 Score=68.32 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=38.9
Q ss_pred CCCccceecCCCC--------CeEEeeCCCCccccccccccCCCCcc---CCCCCcccccch
Q 044718 32 LEEEPCIKCNRRD--------ENLLVCSQSGCLISVHENCLSCGVEF---DDVGNFYRPYCW 82 (236)
Q Consensus 32 ~~qD~CikC~kdG--------q~LL~CSg~GCPlsvH~sCLgssp~f---DD~GnFYCPyC~ 82 (236)
++..+|..|.+.+ ++||.|+ +|+.+||.+||+.++.. .+.++|+||.|.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4678899996542 2399999 99999999999864332 368999999997
No 38
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=5.1e-06 Score=60.08 Aligned_cols=49 Identities=27% Similarity=0.552 Sum_probs=38.1
Q ss_pred CCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhc
Q 044718 32 LEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 32 ~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+...|+ |+. .|. ++.|+.-.|| --||..|++. +-.+.|.||||.|.-+
T Consensus 4 ~~~~yC~-C~~~~~g~-MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYCI-CNQVSYGE-MVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCST-TSCCCCSS-EECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred CCCeEEE-cCCCCCCC-EeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence 3566786 876 566 9999966687 6899999994 4467899999999743
No 39
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.68 E-value=8.9e-06 Score=64.88 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=40.7
Q ss_pred CCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhchHH
Q 044718 32 LEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKCEL 87 (236)
Q Consensus 32 ~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKkav 87 (236)
.+...| .|+..+ ..++.|+ +|+.-||..|++.+.. .+..+.|+||.|.-+...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 62 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcchhcc
Confidence 466788 898853 2388898 9999999999997543 346899999999876543
No 40
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.65 E-value=4.8e-05 Score=54.14 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=38.4
Q ss_pred CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.....|+ |+.. |...+.|+ .|-.=||..|++.+..-...+.||||.|.-++
T Consensus 14 ~~~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3456795 9975 43378888 89999999999976433346899999997543
No 41
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.58 E-value=5e-05 Score=55.07 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=39.4
Q ss_pred CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc-----CCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF-----DDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f-----DD~GnFYCPyC~YKk 85 (236)
.+...| .|+.. |. .+.|+...|..=+|..|++.+..- +....||||.|..++
T Consensus 14 ~~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 356788 59986 44 777887799999999999965432 235799999998654
No 42
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.49 E-value=5.4e-05 Score=52.29 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=40.6
Q ss_pred CCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhchH
Q 044718 32 LEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 32 ~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKka 86 (236)
.+...|..|++.. ...+.|+ .|..=||..|++.+.. .+..+.|+||.|.-+++
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 3667898898752 3378888 9999999999997543 23358999999986653
No 43
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.44 E-value=5.9e-05 Score=57.82 Aligned_cols=55 Identities=16% Similarity=0.370 Sum_probs=41.7
Q ss_pred CccceecCCC----CCeEEeeCCCCccccccccccCCCCcc------CCCCCcccccchhchHHHHH
Q 044718 34 EEPCIKCNRR----DENLLVCSQSGCLISVHENCLSCGVEF------DDVGNFYRPYCWYKCELMRT 90 (236)
Q Consensus 34 qD~CikC~kd----Gq~LL~CSg~GCPlsvH~sCLgssp~f------DD~GnFYCPyC~YKkav~~y 90 (236)
...|..|.+. |. .+.|+ ++|.-=||..|++.+... ++.+.|+||.|.-++.....
T Consensus 3 ~~~C~iC~~p~~~~~~-mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~ 67 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQD-AILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGS 67 (105)
T ss_dssp CCBCTTTCSBCCTTSC-EEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC--
T ss_pred cCCCCCCCCccCCCCC-EEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCC
Confidence 4578899887 45 78887 699999999999965321 56699999999987654433
No 44
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.22 E-value=0.00034 Score=49.45 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=37.1
Q ss_pred CCccceecCCC---CCeEEeeCCCCccccccccccCCCCccC----CCCCcccccchhchH
Q 044718 33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFD----DVGNFYRPYCWYKCE 86 (236)
Q Consensus 33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fD----D~GnFYCPyC~YKka 86 (236)
+.-.|+ |+.. |. .+.|++..|..=+|..|++.+..-. ....||||.|..+++
T Consensus 9 ~~v~C~-C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~ 67 (68)
T 2rsd_A 9 AKVRCI-CSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA 67 (68)
T ss_dssp CEECCT-TCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred CCEEeE-CCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence 456684 8664 44 8889866799999999999643221 224799999987653
No 45
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.94 E-value=0.00063 Score=48.71 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 32 LEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 32 ~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+...| .|++..+ ..+.|+ .|..=||.+|++.+.. ...+.|+||.|.-+
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence 356678 8887533 378898 8999999999997654 34579999999643
No 46
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.92 E-value=0.0003 Score=50.25 Aligned_cols=49 Identities=16% Similarity=0.432 Sum_probs=36.9
Q ss_pred CCccceecCCCCC--eEEeeCCCCccccccccccCCCCcc-----CCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEF-----DDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~f-----DD~GnFYCPyC~YK 84 (236)
+...| .|++... ..+.|+ .|..=||..|++.+..- +....|+||.|..+
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34678 6998743 378888 89999999999965432 13589999999754
No 47
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.90 E-value=0.00045 Score=49.89 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhch
Q 044718 24 GDFMDVDLLEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKC 85 (236)
Q Consensus 24 ~~~~~~e~~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKk 85 (236)
+.+.+++ +...| .|+... ...+.|+ .|..=||..|++.+.. .+....|+||.|.-+.
T Consensus 4 ~~~~~~~--~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 4 GSSGMAL--VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCC--CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccCccC--CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3444444 45567 788853 2378898 8999999999996543 2235899999998553
No 48
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.72 E-value=0.00024 Score=55.19 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCCccceecC--CCCCeEEeeCCCCccccccccccCCC------------CccCCCCCcccccch
Q 044718 31 LLEEEPCIKCN--RRDENLLVCSQSGCLISVHENCLSCG------------VEFDDVGNFYRPYCW 82 (236)
Q Consensus 31 ~~~qD~CikC~--kdGq~LL~CSg~GCPlsvH~sCLgss------------p~fDD~GnFYCPyC~ 82 (236)
..+++.|-+|+ ..+. |+.|- -|...||..||... ..-...+-|.||+|.
T Consensus 12 ~~~D~~C~VC~~~t~~~-l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAES-LFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSSC-CSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCccccccccc-eeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 34788999999 5555 99999 99999999999853 334478899999994
No 49
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.67 E-value=0.00028 Score=50.39 Aligned_cols=50 Identities=18% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc------CCCCCcccccch
Q 044718 32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF------DDVGNFYRPYCW 82 (236)
Q Consensus 32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f------DD~GnFYCPyC~ 82 (236)
.+...|.+|.++ ++..+.|++ +|..=||..|++.+... ++.+.|+||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 366789999985 333677874 99999999999976531 477899999995
No 50
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.22 E-value=0.0011 Score=44.77 Aligned_cols=46 Identities=20% Similarity=0.479 Sum_probs=32.9
Q ss_pred cceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 36 PCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 36 ~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
.|-.|+++ +...+.|++ +|..=||..|++.+..-.+.+.|+||.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence 35566664 333778886 89999999999975443234899999994
No 51
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.35 E-value=0.0074 Score=50.49 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=37.4
Q ss_pred ccceecCCC---CC---eEEeeCCCCccccccccccCCCCc----c---CCCCCcccccchhchHHH
Q 044718 35 EPCIKCNRR---DE---NLLVCSQSGCLISVHENCLSCGVE----F---DDVGNFYRPYCWYKCELM 88 (236)
Q Consensus 35 D~CikC~kd---Gq---~LL~CSg~GCPlsvH~sCLgssp~----f---DD~GnFYCPyC~YKkav~ 88 (236)
+.|..|++. ++ ..+.|+ +|..=||.+|++.+.. + .+...|+||.|.-+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 467777764 22 278898 9999999999996531 1 123589999999776654
No 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.12 E-value=0.014 Score=39.12 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=31.3
Q ss_pred cCCC--CCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718 40 CNRR--DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW 82 (236)
Q Consensus 40 C~kd--Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~ 82 (236)
|+.. |...+.|+ .|..=+|.+|++.+.. ...+.|+||.|.
T Consensus 9 C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~ 50 (52)
T 3o7a_A 9 CMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR 50 (52)
T ss_dssp TCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred eCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence 6664 32388899 8999999999997654 335799999995
No 53
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=94.08 E-value=0.012 Score=41.98 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=33.8
Q ss_pred ccceecCCCC---CeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718 35 EPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK 84 (236)
Q Consensus 35 D~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK 84 (236)
-.| .|+... ...+.|+ .|..=||..|++.+..- .....|+||.|.-+
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 687742 2388899 89999999999965432 22368999999754
No 54
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=93.32 E-value=0.033 Score=41.72 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=27.5
Q ss_pred EEeeCCCCccccccccccCCCCcc----CCCCCcccccchh
Q 044718 47 LLVCSQSGCLISVHENCLSCGVEF----DDVGNFYRPYCWY 83 (236)
Q Consensus 47 LL~CSg~GCPlsvH~sCLgssp~f----DD~GnFYCPyC~Y 83 (236)
||.|+ .|.-.||..|++..... +..+.|+||.|.=
T Consensus 75 m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 89999 99999999999965332 2345699999963
No 55
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.96 E-value=0.0059 Score=42.32 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=37.5
Q ss_pred CCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.+.+.|+.|-..++. ++.|.=.|..-.||..||. .=+..+|+..||.|.+.-
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~--~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLS--TWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHH--HHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHH--HHHHhCCCCccCCCCCee
Confidence 367889999654442 5666544666699999998 344456889999998753
No 56
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.65 E-value=0.03 Score=40.62 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=36.3
Q ss_pred CCCCccceecCCCCC---e-EEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718 31 LLEEEPCIKCNRRDE---N-LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 31 ~~~qD~CikC~kdGq---~-LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka 86 (236)
..+++.|..|-...+ . ++.|.-.|..-.||..||.. =+.-.++..||.|.+.-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~--Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQ--WIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHH--HHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHH--HHhhCCCCCCCCCCCeee
Confidence 345678999986532 2 44454335568999999983 233346789999987643
No 57
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=92.42 E-value=0.071 Score=41.40 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=35.7
Q ss_pred CccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCccc
Q 044718 34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYR 78 (236)
Q Consensus 34 qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYC 78 (236)
.-.|..|++... +.|. .||.+||..|+...+...+.+.|+|
T Consensus 58 ~c~C~~C~k~~~--~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 58 WHQCDECSSAAV--SFCE--FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp GGBCTTTCSBCC--EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCCCcCCCCCC--cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence 346889999888 7899 9999999999998888888888876
No 58
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=92.18 E-value=0.029 Score=52.85 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=35.9
Q ss_pred CCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718 33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK 84 (236)
+...| .|+.. +...+.|+ .|.-=||..|++.+..- +..+.|+||.|.-+
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 44556 78874 22277888 89999999999965442 23478999999754
No 59
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.05 E-value=0.039 Score=46.12 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCC--CC-c---cCCCCCcccccchh
Q 044718 24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSC--GV-E---FDDVGNFYRPYCWY 83 (236)
Q Consensus 24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgs--sp-~---fDD~GnFYCPyC~Y 83 (236)
+.++-++..-+..|..|+.+|+ ||.|+...|+.+|=.+|+.. .+ . ...+..|.|=.|.=
T Consensus 69 ~~f~~DeDG~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 69 CAYQYDDDGYQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp HTTCBCTTSSBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cccccCCCCCcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3466677778999999999998 99999889999999999873 22 1 23688999988863
No 60
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=89.74 E-value=0.07 Score=49.69 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCC------ccCCCCCcccccchhc
Q 044718 24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGV------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp------~fDD~GnFYCPyC~YK 84 (236)
+.+.-++..-+..|..|+.+|+ |++|+...|+.+|=.+|+..-+ .......|.|=.|.=+
T Consensus 83 ~~f~~D~DG~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 83 ALFLYDDDGYQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TTTCBCSSSSBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cCcccCCCCCcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4566677778999999999999 9999999999999999987311 1235689999999844
No 61
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=88.58 E-value=0.2 Score=48.38 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.9
Q ss_pred EEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718 47 LLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK 84 (236)
Q Consensus 47 LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK 84 (236)
.+.|+ +|.-=||..|++.+..- +..+.||||.|.-+
T Consensus 58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 56788 99999999999976533 34589999999854
No 62
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=84.90 E-value=0.16 Score=47.61 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=33.4
Q ss_pred ecCCC----CCeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhchH
Q 044718 39 KCNRR----DENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYKCE 86 (236)
Q Consensus 39 kC~kd----Gq~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YKka 86 (236)
.|+.. |. .+.|+ .|.-=+|..|++.+..- .+.+.|+||.|.-+..
T Consensus 9 iC~~~~d~~~~-MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 9 LCRLPYDVTRF-MIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp TTTEECCTTSC-EEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eCCCcCCCCCC-eEEcC--CCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 56663 44 77888 99999999999965432 2347899999986543
No 63
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=84.53 E-value=0.56 Score=34.74 Aligned_cols=32 Identities=31% Similarity=0.743 Sum_probs=25.5
Q ss_pred CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+..-|..|+.+.. |.|- || .|+-||+.||..
T Consensus 6 ee~pWC~ICneDAt--lrC~--gC-----------------dgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNEDAT--LRCA--GC-----------------DGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSCCC--EEET--TT-----------------TSEEECSSHHHH
T ss_pred cCCCeeEEeCCCCe--EEec--CC-----------------CCceehHHHHHH
Confidence 46677999999988 7888 55 468999999943
No 64
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.03 E-value=0.9 Score=31.87 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCCCCCCccceecCCC---CCeEEeeCCCCccccccccccCC---CCc-----cCCCCCcccccchhch
Q 044718 28 DVDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSC---GVE-----FDDVGNFYRPYCWYKC 85 (236)
Q Consensus 28 ~~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgs---sp~-----fDD~GnFYCPyC~YKk 85 (236)
+..+.....|..|++. ++ ++.-. -..||..|+.+ ..+ +...|..||..|..++
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~-~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 9 PIKIRGPSHCAGCKEEIKHGQ-SLLAL----DKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp CCCCSSCSCCTTTCCCCSSSC-CEEET----TEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred CcCCCCCCCCcCcCCeeCCCe-EEEEC----CcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence 3345577899999984 55 44433 25788888775 122 2356888999887553
No 65
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.31 E-value=2 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=34.1
Q ss_pred CCCCCCCccceecCCC---CCeEEeeCCCCccccccccccCCC---Ccc--------CCCCCcccccchhc
Q 044718 28 DVDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCG---VEF--------DDVGNFYRPYCWYK 84 (236)
Q Consensus 28 ~~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgss---p~f--------DD~GnFYCPyC~YK 84 (236)
.........|..|++. ++ +|.-. -..||..|+.+. .++ ...|.+||..|..+
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e-~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLE-RLCVN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTT-BCCBT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred CcCCCCCCCCcccCCCcccce-EEEEC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 3445567899999984 44 44433 257999988752 111 34788999888754
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.02 E-value=1.2 Score=32.23 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=33.1
Q ss_pred CCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..+.|-.|..--..=..|. .|...||..|+. .-|.-.++--||.|.-.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~--kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVA--KYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHHHH--HHSTTCSSCCCTTTCSC
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHHHH--HHHHhcCCCCCCCCcCc
Confidence 5567877775433223788 999999999998 23333445679999744
No 67
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.23 E-value=2.4 Score=29.11 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCCccceecCCCCC-eEEeeCCCCccccccccccCCC---------CccCCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSCG---------VEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgss---------p~fDD~GnFYCPyC~YKk 85 (236)
.....|..|++.-. +.|.-. + ..||..|+.+. .-+...|..||..|+.+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 72 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLR--D--RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECS--S--CEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred CCCCccccCCCCccCcEEEEC--c--ceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 35678999998533 144433 2 57999888762 234467899999998543
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=75.16 E-value=0.74 Score=33.41 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=27.0
Q ss_pred EEeeCCCCccccccccccCCCC-------ccCCCCCcccccchh
Q 044718 47 LLVCSQSGCLISVHENCLSCGV-------EFDDVGNFYRPYCWY 83 (236)
Q Consensus 47 LL~CSg~GCPlsvH~sCLgssp-------~fDD~GnFYCPyC~Y 83 (236)
.+.|+ .|---+|.+|++.+. .+.++-.|.||.|.-
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 35788 999999999999652 223466899999974
No 69
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=74.42 E-value=1.1 Score=33.11 Aligned_cols=31 Identities=19% Similarity=0.694 Sum_probs=26.3
Q ss_pred CccceecCCC--CCeEEeeCCCCccccccccccC
Q 044718 34 EEPCIKCNRR--DENLLVCSQSGCLISVHENCLS 65 (236)
Q Consensus 34 qD~CikC~kd--Gq~LL~CSg~GCPlsvH~sCLg 65 (236)
.-.|..|+.. |- -+.|+...|..+||..|..
T Consensus 17 ~l~C~iC~~~~~GA-ciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKGVGA-SIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCCSSC-EEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCCCcE-eEecCCCCCCCcCcHHHHH
Confidence 3579999864 66 7899999999999999965
No 70
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=73.00 E-value=5.3 Score=30.35 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCC---CC--------ccCCCCCcccccchhc
Q 044718 28 DVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSC---GV--------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgs---sp--------~fDD~GnFYCPyC~YK 84 (236)
....+....|..|++.=. .+|.-. -..||..|+.+ .. -+...|..||..|..+
T Consensus 55 ~~~~~~~~~C~~C~~~I~~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 55 GSGGLSWKRCAGCGGKIADRFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120 (123)
T ss_dssp CCSCSSCSBBSSSSSBCCSSSEEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHH
T ss_pred cccCccCCcCcCCCCCcCCcEEEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhh
Confidence 334556789999997532 134333 25789888775 22 2345678899888764
No 71
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.79 E-value=5.9 Score=27.85 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCCCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCC---------CccCCCCCcccccchhc
Q 044718 26 FMDVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCG---------VEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgss---------p~fDD~GnFYCPyC~YK 84 (236)
.++........|..|++.-. +++.-. -..||..|+.+. .-+...|..||..|..+
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 72 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLAN----QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQ 72 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECS----SSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHH
T ss_pred CCccCCCCCCcCccCCCccCCceeEEEC----CCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHH
Confidence 33444456789999998652 255433 357898888752 23345678888888744
No 72
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.31 E-value=8.4 Score=26.97 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCccceecCCCCC-eEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhch
Q 044718 32 LEEEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 32 ~~qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YKk 85 (236)
.....|..|++.-. +.+.-. -..||..|+.+. . -+...|..||..|..+.
T Consensus 23 ~~~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFLVAL----GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp TCCCBBSSSCCBCCSCEEEET----TEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred CCCCCCccCCCEecceEEEEC----CccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 34568999987432 144433 267998888752 1 23357888999887653
No 73
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=67.19 E-value=2.1 Score=29.13 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=34.7
Q ss_pred CCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 26 FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
....+..+...|..|...-..-.. - ..|--.||..|+.. -+...+.+.||.|..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~-~-~~CgH~fC~~Ci~~--~~~~~~~~~CP~Cr~ 60 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVV-I-PCCGNSYCDECIRT--ALLESDEHTCPTCHQ 60 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEE-C-SSSCCEECTTHHHH--HHHHSSSSCCSSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeE-c-CCCCCHHHHHHHHH--HHHhcCCCcCCCCCC
Confidence 445555677889999765552111 1 13667888999873 333345689999975
No 74
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.85 E-value=5 Score=26.98 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCCCCCccceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
........|..|-.. +..+.. - .|--.||..|+..- + .....||+|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~-~--~C~H~fc~~Ci~~~--~--~~~~~CP~Cr~~ 61 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQ-L--PCNHLFHDSCIVPW--L--EQHDSCPVCRKS 61 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEE-C--TTSCEEETTTTHHH--H--TTTCSCTTTCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEE-e--CCCCeecHHHHHHH--H--HcCCcCcCcCCc
Confidence 344467889999543 331211 1 36678999999732 2 123689999754
No 75
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.80 E-value=2.2 Score=26.97 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=30.4
Q ss_pred CCCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccc
Q 044718 28 DVDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYC 81 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC 81 (236)
.....+...|..|...-.. +| .|--.||..|+..-.. .-.+...||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~-~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVII-----ECGHNFCKACITRWWE-DLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCC-----SSCCCCCHHHHHHHTT-SSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeC-----CCCCccCHHHHHHHHH-hcCCCCCCCCC
Confidence 3445567789999765442 33 4557788899873211 01467899988
No 76
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=63.37 E-value=2.9 Score=28.67 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=31.6
Q ss_pred CCccceecCC---CCCeEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhch
Q 044718 33 EEEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 33 ~qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YKk 85 (236)
....|..|++ +++ ++.-. -..||..|+.+. . -+...|..||..|..+.
T Consensus 6 ~~~~C~~C~~~I~~~~-~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE-EVQCD----GRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp --CBCSSSCCBCSSTT-EEEET----TEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHH
T ss_pred CCCcCcCcCccccCce-eEEeC----CcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHH
Confidence 4578999998 455 55554 257898887642 1 23356788999998654
No 77
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.22 E-value=2.3 Score=27.51 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCCCCCCCCccceecCCC-------CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 26 FMDVDLLEEEPCIKCNRR-------DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kd-------Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
.+.....+...|..|-.. ++ +++-- .|--.||..|+..-.. ....||+|..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~-~~~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 64 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGR-LIVST--ECGHVFCSQCLRDSLK----NANTCPTCRK 64 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTC-CEEEC--SSSCEEEHHHHHHHHH----HCSSCTTTCC
T ss_pred ccccCCCCCCCCcccCccccccccccC-CeEeC--CCCChhcHHHHHHHHH----cCCCCCCCCC
Confidence 344445577889999764 22 22333 5667899999973222 1457999964
No 78
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.88 E-value=5.5 Score=26.73 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=32.8
Q ss_pred CCCCCccceecCCCC---CeEEeeCCCCccccccccccCCC---------CccCCCCCcccccchhc
Q 044718 30 DLLEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCG---------VEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 30 e~~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgss---------p~fDD~GnFYCPyC~YK 84 (236)
+......|..|++.- +.++.-. + ..||..|+.+. .-+...|..||..|..+
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSN--G--ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEET--T--EEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred cCCCCCCchhcCCccCCCceEEEeC--c--cEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 334568899999854 2244444 2 47899888752 12345778888888754
No 79
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=59.78 E-value=11 Score=29.65 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCC---C-----ccCCCCCcccccchhch
Q 044718 29 VDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCG---V-----EFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgss---p-----~fDD~GnFYCPyC~YKk 85 (236)
........|..|++.-. .+|.-. -..||..|+.+. . .|.-.|..||..|..+.
T Consensus 55 ~~~~~~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~ 117 (182)
T 2jtn_A 55 GGTPEIPMCAGCDQHILDRFILKAL----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 117 (182)
T ss_dssp CCCCSCCBCBTSSSBCCCSEEEEET----TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT
T ss_pred CCCCCCCcCccCCCCccCceeEEec----CCeEccccCccCCCCCccCCCceeECCEeeecCccccc
Confidence 33456789999998533 244443 257998888752 1 24457888999888643
No 80
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=58.12 E-value=7.7 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCCccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 31 LLEEEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 31 ~~~qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..++..|..|-. .++ ...-- .|--.||..|+..- + ..+..||.|...
T Consensus 37 ~~~~~~C~IC~~~~~~~~-~~~~l--~C~H~Fh~~Ci~~w--l--~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGD-VATEL--PCHHYFHKPCVSIW--L--QKSGTCPVCRCM 86 (91)
T ss_dssp SSSCSEETTTTEECCTTC-EEEEE--TTTEEEEHHHHHHH--H--TTTCBCTTTCCB
T ss_pred cCCCCCCcccChhhcCCC-cEEec--CCCChHHHHHHHHH--H--HcCCcCcCcCcc
Confidence 346677999953 344 22222 36689999999842 2 234589999754
No 81
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.55 E-value=6.8 Score=27.40 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCCCccceecCCCCCe-EEeeCCCCccccccccccCC---CC------ccCCCCCcccccchhch
Q 044718 30 DLLEEEPCIKCNRRDEN-LLVCSQSGCLISVHENCLSC---GV------EFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgs---sp------~fDD~GnFYCPyC~YKk 85 (236)
.......|..|++.-.. .+.-. + ..||..|+.+ .. -+...|..||..|+.++
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKAR--D--KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESS--S--CEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CCCcCCCcccCCCEecccEEEEC--C--ceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 33456789999975331 33333 2 5799888875 22 22346788999887543
No 82
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=56.81 E-value=3.9 Score=27.31 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCcc---CCCCCcccccchhch
Q 044718 29 VDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEF---DDVGNFYRPYCWYKC 85 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~f---DD~GnFYCPyC~YKk 85 (236)
.+..++..|..|...-.. +| .|--.||..|+..-... ...+...||.|...-
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l-----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSL-----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCC-----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeEC-----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 344567789999754432 33 45577888998843221 224689999997543
No 83
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=56.02 E-value=4.6 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCccceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
+...|..|-.. ++.+..-. .|--.||..|+..-.. .+..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWLG----SHSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTTT----TCCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECC--CCCCcccHHHHHHHHH----cCCcCcCCCCE
Confidence 45667777654 33233333 4778899999974322 25679999743
No 84
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.38 E-value=4.4 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCCCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCcc--CCCCCcccccchhc
Q 044718 26 FMDVDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEF--DDVGNFYRPYCWYK 84 (236)
Q Consensus 26 ~~~~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~f--DD~GnFYCPyC~YK 84 (236)
....+..+...|..|...-.. +| .|--.||..|+..-... ...+.+.||.|...
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSA-----DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEEC-----TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred HHHHhCccCCCCcCCChhhCcceeC-----CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 344555677889999776442 33 36677888898732111 23568999999754
No 85
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.19 E-value=8.2 Score=25.40 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 28 DVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..+..+...|..|...-..-..- .|--.||..|+..-.. ...+...||.|...
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTI---DCGHNFCLKCITQIGE-TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEEC---TTCCEEEHHHHHHHCS-SSCSCCCCSSSCCC
T ss_pred HHhCccCCEeccCCcccCCeEEc---CCCChhhHHHHHHHHH-cCCCCCCCCCCCCc
Confidence 34456778899998765532111 4667889999873222 12578899999754
No 86
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=53.06 E-value=3.5 Score=27.13 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCCCCccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 30 DLLEEEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 30 e~~~qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
+......|..|-. .++ -...- .|--.||..|+..-... +..||.|...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~-~~~~~--~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGE-DVRRL--PCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp STTCCCSBTTTTBCCCSSS-CEEEC--TTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred cCCCCCCCeeCCccccCCC-cEEEe--CCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 3445677988944 333 22333 47788999999742221 2359999754
No 87
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.76 E-value=12 Score=25.27 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCccceecCCC---CCeEEeeCCCCccccccccccCCC---C------ccCCCCCcccc-cchhc
Q 044718 33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRP-YCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCP-yC~YK 84 (236)
....|..|++. ++ ++.-. -..||..|+.+. . -+...|..||. .|..+
T Consensus 8 ~~~~C~~C~~~I~~~~-~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-KVSSL----GKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp CCCBCTTTCCBCCTTT-EEEET----TEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCcCCCCEeECCe-EEEEC----CeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 35789999984 44 55443 257898887752 2 23356788998 68754
No 88
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=51.52 E-value=4.4 Score=25.30 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=9.9
Q ss_pred CCCcccccchhc
Q 044718 73 VGNFYRPYCWYK 84 (236)
Q Consensus 73 ~GnFYCPyC~YK 84 (236)
.|||.||.|..-
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 699999999643
No 89
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.39 E-value=6 Score=26.04 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=32.1
Q ss_pred CCCCCCccceecCCCCCe-EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+..+...|..|-..-.. +| .|--.||..|+..-.. ....||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~-----~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 57 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLIL-----PCAHSFCQKCIDKWSD----RHRNCPICRLQ 57 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEE-----TTTEEECHHHHHHSSC----CCSSCHHHHHC
T ss_pred hcCCCCCCCeeCCcCccCccc-----CCCCcccHHHHHHHHH----CcCcCCCcCCc
Confidence 344567789999776553 33 4567799999974222 57889999754
No 90
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.11 E-value=6.6 Score=26.95 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=24.6
Q ss_pred CCCCCccceecCCCCCe--EEeeCCCCccccccc-cccCCCCccCCCCCcccccchhc
Q 044718 30 DLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHE-NCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~-sCLgssp~fDD~GnFYCPyC~YK 84 (236)
...+...|..|-..-.. ||.|. |. -|..+... .+.||+|.-.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCg--------H~~~C~~C~~~-----~~~CP~CR~~ 55 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCR--------HTCLCDGCVKY-----FQQCPMCRQF 55 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTT--------BCCSCTTHHHH-----CSSCTTTCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCC--------ChhhhHHHHhc-----CCCCCCCCcc
Confidence 33457789999654442 55666 44 34433222 3789999743
No 91
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=49.86 E-value=3.8 Score=25.42 Aligned_cols=12 Identities=8% Similarity=0.312 Sum_probs=9.9
Q ss_pred CCCcccccchhc
Q 044718 73 VGNFYRPYCWYK 84 (236)
Q Consensus 73 ~GnFYCPyC~YK 84 (236)
.|||.||.|.+.
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 599999999754
No 92
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.63 E-value=7.7 Score=25.63 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=29.4
Q ss_pred CCccceecCCCCC---eEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YK 84 (236)
....|..|++.-. .++.-. -..||..|+.+. .+ +...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYG----GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECST----TCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred cCCCCccCCCccccCccEEEEC----ccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 4568899988532 244433 247898888752 22 234677788877754
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.73 E-value=4.3 Score=27.33 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCCCccceecC---CCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718 31 LLEEEPCIKCN---RRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 31 ~~~qD~CikC~---kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y 83 (236)
..++..|..|- ..++ .+..- .|--.||..|+..-.. .+..||.|..
T Consensus 20 ~~~~~~C~IC~~~~~~~~-~~~~l--~C~H~fh~~Ci~~w~~----~~~~CP~Cr~ 68 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQ-LLRVL--PCNHEFHAKCVDKWLK----ANRTCPICRA 68 (75)
T ss_dssp SSSCCEETTTTEECCBTC-EEEEE--TTTEEEETTHHHHHHH----HCSSCTTTCC
T ss_pred cCCCCCCeECCcccCCCC-eEEEE--CCCCHhHHHHHHHHHH----cCCcCcCcCC
Confidence 34567899998 3454 23333 3668899999984322 2357999964
No 94
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.08 E-value=14 Score=24.51 Aligned_cols=48 Identities=15% Similarity=0.391 Sum_probs=29.2
Q ss_pred CCccceecCCCCC-----eEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDE-----NLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq-----~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YK 84 (236)
....|..|++.-. .++.-. -..||..|+.+. . -+...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFE----ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECS----SCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred CCCCCcCCCccccCCCCcceEEEC----CcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 3567888887432 144332 247888887752 1 2236788889888754
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=44.51 E-value=3.3 Score=32.04 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 29 VDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
.+..+...|..|...-..-+.+. .|--.||..|+..-. ..++..||.|....
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~--~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTK--ECLHRFCADCIITAL---RSGNKECPTCRKKL 100 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEET--TTCCEEEHHHHHHHH---HTTCCBCTTTCCBC
T ss_pred hhCCCCCCCcccChHhhCcCEeC--CCCChhHHHHHHHHH---HhCcCCCCCCCCcC
Confidence 34446668999977665433343 577889999997322 24678999998653
No 96
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=43.80 E-value=6.7 Score=26.34 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=33.4
Q ss_pred CCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
++..+...|..|...=..=.. - .|--.|+..|+..- -..|...||.|...
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~-~--~CgH~fc~~Ci~~~---~~~~~~~CP~C~~~ 52 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVI-V--STGQTYERSSIQKW---LDAGHKTCPKSQET 52 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEE-E--TTTEEEEHHHHHHH---HTTTCCBCTTTCCB
T ss_pred cCCcccCCCCCccccccCCEE-c--CCCCeecHHHHHHH---HHHCcCCCCCCcCC
Confidence 345567789888875542111 1 46788899998732 23578899999855
No 97
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=43.48 E-value=5.7 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=1.0
Q ss_pred CCccceecCCCCCe-EEeeC-------CC-------CccccccccccCCCCccCCCCCcccccchhchHHH
Q 044718 33 EEEPCIKCNRRDEN-LLVCS-------QS-------GCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELM 88 (236)
Q Consensus 33 ~qD~CikC~kdGq~-LL~CS-------g~-------GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKkav~ 88 (236)
+++.|..|-..=.. -..|- +. .|--.||..|+..-+.. +..||.|.......
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEFQ 113 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeeee
Confidence 45788888765431 01121 11 35567999999853332 56899998654443
No 98
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=43.30 E-value=5.2 Score=28.79 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=20.8
Q ss_pred CccccccccccCCCCccC-CCCCcccccchhc
Q 044718 54 GCLISVHENCLSCGVEFD-DVGNFYRPYCWYK 84 (236)
Q Consensus 54 GCPlsvH~sCLgssp~fD-D~GnFYCPyC~YK 84 (236)
.|-=.||..||..-+... ..+..-||.|...
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 466899999998432211 1467899999743
No 99
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=43.14 E-value=8.4 Score=27.90 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=34.2
Q ss_pred CCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhchHH
Q 044718 30 DLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCEL 87 (236)
Q Consensus 30 e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKkav 87 (236)
.+.++..|..|...=.. .| .|--.|+..|+..- -..+.+.||.|...-..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~-----~CgH~fC~~Ci~~~---~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL-----PCNHTLCKPCFQST---VEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC-----TTSCEECHHHHCCC---CCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEc-----CCCCHHhHHHHHHH---HhHCcCCCCCCCcccCc
Confidence 34456789999765442 33 46678889998843 34578999999876554
No 100
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.08 E-value=8.4 Score=25.59 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=30.6
Q ss_pred CCCCCCccceecCCCC---CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+......|..|-..- ..+... .|--.||..|+..-... +..||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 61 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGIC---PCKHAFHRKCLIKWLEV----RKVCPLCNMP 61 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEE---TTTEEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEc---CCCCEecHHHHHHHHHc----CCcCCCcCcc
Confidence 3445677899997652 323222 36688999999742221 2379999754
No 101
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.08 E-value=10 Score=24.41 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=31.3
Q ss_pred CCCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccc
Q 044718 28 DVDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYC 81 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC 81 (236)
.....++..|..|...-.. +| .|--.||..|+..-.. ...+...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~-~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTI-----DCGHNFCLKCITQIGE-TSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEEC-----TTSSEECHHHHHHHHH-HCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEe-----CCCCcchHHHHHHHHH-cCCCCCcCcCC
Confidence 3455677889999765442 33 4667788889873222 13467889988
No 102
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=42.56 E-value=10 Score=29.55 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.9
Q ss_pred CCCcccccchhch
Q 044718 73 VGNFYRPYCWYKC 85 (236)
Q Consensus 73 ~GnFYCPyC~YKk 85 (236)
--|+.||+||.-.
T Consensus 8 ~~D~~CP~cy~~~ 20 (208)
T 3kzq_A 8 VHDPMCSWCWGYK 20 (208)
T ss_dssp EECTTCHHHHHHH
T ss_pred EECCCCchhhhhh
Confidence 4588999999543
No 103
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=41.73 E-value=14 Score=31.10 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=29.0
Q ss_pred cceecCCCCC---eEEeeCCCCccccccccccCCCC----ccCCCCCcccccchh
Q 044718 36 PCIKCNRRDE---NLLVCSQSGCLISVHENCLSCGV----EFDDVGNFYRPYCWY 83 (236)
Q Consensus 36 ~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgssp----~fDD~GnFYCPyC~Y 83 (236)
.|. |+++|+ .-|.|+ +|---||..|+.... +++--=.|.|-.|.-
T Consensus 7 yCY-CG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 7 SVD-EENGRQLGEVELQCG--ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp -----CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EEE-cCCCCCCCceeEeec--cccceecHHHhcccccCccccceeEEEEccccCC
Confidence 443 888887 367999 899999999998532 222222355888864
No 104
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.73 E-value=7.3 Score=26.01 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=32.5
Q ss_pred CCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 27 MDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 27 ~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
...+..+...|..|...-..-..-. .|--.||..|+..-... ...||.|...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 59 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTIT--ECLHTFCKSCIVRHFYY----SNRCPKCNIV 59 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECS--SSCCEECHHHHHHHHHH----CSSCTTTCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEEC--CCCCHHHHHHHHHHHHc----CCcCCCcCcc
Confidence 3445557788999977654211222 56678889998733221 5689999743
No 105
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.53 E-value=20 Score=23.71 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=31.4
Q ss_pred CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718 31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka 86 (236)
..+...|..|-..-..-+.- .|--.||..|+..-.. ....||.|...-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKGASW----LGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE---TTTEEEEHHHHHHCTT----CSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEc---cCCCHHHHHHHHHHHH----CCCcCcCcCchhC
Confidence 44667899997665531111 3667799999873222 2378999986544
No 106
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=40.33 E-value=9.6 Score=32.42 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=33.4
Q ss_pred CccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718 34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 34 qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk 85 (236)
...|-.|..---.=..|. .|...+|..|+. .-+...++--||.|--.+
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~--~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVA--KYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHH--HHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHH--HHHHhCCCCCCCCCCCCC
Confidence 566777765422113898 599999999997 334446778899996543
No 107
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=39.28 E-value=4.6 Score=28.00 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=33.2
Q ss_pred CCCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 28 DVDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+++.+...|..|...=.. +|. .|--.|+..|+.. .+...+.+.||.|.-.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~----~CgH~fC~~Ci~~--~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIP----CCGNSYCDECIRT--ALLESDEHTCPTCHQN 59 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECT----TTCCEECHHHHHH--HHHHCTTCCCTTTCCS
T ss_pred cccCCcCCCCCCCChhhcCceECC----CCCCHHHHHHHHH--HHHhcCCCcCcCCCCc
Confidence 3455567789999754332 222 2567788888872 3334567999999865
No 108
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.39 E-value=12 Score=24.84 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCcc--CCCCCcccccchhc
Q 044718 28 DVDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEF--DDVGNFYRPYCWYK 84 (236)
Q Consensus 28 ~~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~f--DD~GnFYCPyC~YK 84 (236)
..++.+...|..|...-.. +| .|--.||..|+..-... .+.+...||.|.-.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSL-----DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCC-----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred HHHccCCCCCCCCCcccCCceeC-----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 3455677889999876542 23 35567888888632111 13568899999754
No 109
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.25 E-value=13 Score=25.44 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=14.7
Q ss_pred CCccCCCCCcccccchhch
Q 044718 67 GVEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 67 sp~fDD~GnFYCPyC~YKk 85 (236)
+.+..+.|.|-||.|-|.-
T Consensus 3 s~~~~~~~~W~C~~CT~~N 21 (53)
T 2d9g_A 3 SGSSGDEGYWDCSVCTFRN 21 (53)
T ss_dssp CCCSSCCCCEECSSSCCEE
T ss_pred CCCCCCCCCcCCCCCccCC
Confidence 3455688999999998863
No 110
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.01 E-value=12 Score=25.41 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
++......|..|...=..-+. ..|--.||..|+..-.. ....||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 58 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVV---TKCRHYFCESCALEHFR----ATPRCYICDQP 58 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEE---CTTSCEEEHHHHHHHHH----HCSBCSSSCCB
T ss_pred ccCCCCCCCcCCCchhcCeeE---ccCCCHhHHHHHHHHHH----CCCcCCCcCcc
Confidence 344456789999765542221 25667888999874322 25689999755
No 111
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=36.52 E-value=13 Score=29.43 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCCCccceecCC---CCCeEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhch
Q 044718 31 LLEEEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYKC 85 (236)
Q Consensus 31 ~~~qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YKk 85 (236)
+.....|..|++ .++ ++.-. -..||..|+.+. .+ +...|..||..|..+.
T Consensus 4 ~~~~~~C~~C~~~I~~~~-~v~a~----g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAE-EVQCE----GSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKK 65 (192)
T ss_dssp CCCCEECTTTCCEECSSC-CEEET----TEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHH
T ss_pred CCCCCcCccCCCeeccee-EEEeC----CceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhh
Confidence 445678999998 566 44433 258999988852 22 2356777888887543
No 112
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.21 E-value=17 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.482 Sum_probs=30.1
Q ss_pred CccceecCCCCC-----eEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhch
Q 044718 34 EEPCIKCNRRDE-----NLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYKC 85 (236)
Q Consensus 34 qD~CikC~kdGq-----~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YKk 85 (236)
...|..|++.-. ..+.-. -..||..|+.+. .+ +...|..||..|..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQ----DSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEET----TEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred CCCCccCCCcccCCCCceeEEEC----CcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 457888887422 255544 247898888752 22 2346788998887653
No 113
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.41 E-value=21 Score=24.98 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCccceecCCCC---CeEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhc
Q 044718 32 LEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 32 ~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YK 84 (236)
+....|..|++.- ..++.-. + ..||..|+.+. . -+...|..||..|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 63 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYK--N--RFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR 63 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEET--T--EEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT
T ss_pred CCCCcCcccCCcccCCceEEEEC--c--cChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhh
Confidence 3457899998843 2255544 2 47888888752 1 2235677889888755
No 114
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=35.08 E-value=13 Score=28.56 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=13.2
Q ss_pred CccCCCCCcccccchhchH
Q 044718 68 VEFDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 68 p~fDD~GnFYCPyC~YKka 86 (236)
++++--.|+.||+|+....
T Consensus 8 ~~I~~f~D~~CP~C~~~~~ 26 (216)
T 2in3_A 8 PVLWYIADPMCSWCWGFAP 26 (216)
T ss_dssp CEEEEEECTTCHHHHHHHH
T ss_pred eeEEEEECCCCchhhcchH
Confidence 3445567899999995433
No 115
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.04 E-value=11 Score=25.43 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCCCCCCCccceecCCCCCe---EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 27 MDVDLLEEEPCIKCNRRDEN---LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 27 ~~~e~~~qD~CikC~kdGq~---LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..+...+...|..|-..-.. ..+-- .|--.||..|+..-..- ..+...||+|...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLL--HCGHTICRQCLEKLLAS-SINGVRCPFCSKI 65 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHHHHHH-CSSCBCCTTTCCC
T ss_pred ChhhccCCCCCccCCccccccCCCeEEC--CCCChhhHHHHHHHHHc-CCCCcCCCCCCCc
Confidence 34455566779888765431 01111 46678888998742221 1357899999754
No 116
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=34.94 E-value=16 Score=34.26 Aligned_cols=51 Identities=27% Similarity=0.510 Sum_probs=31.1
Q ss_pred CCccceecCC---C-CCeE--EeeCCCCccccccccccCCC--------CccCCCCCcccccchhch
Q 044718 33 EEEPCIKCNR---R-DENL--LVCSQSGCLISVHENCLSCG--------VEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 33 ~qD~CikC~k---d-Gq~L--L~CSg~GCPlsvH~sCLgss--------p~fDD~GnFYCPyC~YKk 85 (236)
.+..|-.|=. + |+ | ..|....|-..||..||.-- ..| +.=---||||.-+-
T Consensus 307 ~~~ECaICys~~l~~g~-lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSF-nvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGE-VPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFL-EVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTCC-CCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTT-TCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCCC-CccccccCCccCCccchHHHHHHHHhCCCccccc-cccCCCCCCCCCcC
Confidence 4455666642 2 44 2 37988899999999999620 111 11113599998543
No 117
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.65 E-value=11 Score=24.91 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCccceecCCCCC---eEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YK 84 (236)
....|..|++.-. .++.-. -..||..|+.+. . -+...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVAL----DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECS----SSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEEC----CCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 3567999987432 144444 257888887752 2 2335678899998754
No 118
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=34.26 E-value=8.6 Score=23.91 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCccceecCCCC---CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
.+..|..|-..- ......- .|--.||..|+..-... ...||+|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL--PCGHLLHRTCYEEMLKE----GYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC--TTSCEEETTHHHHHHHH----TCCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEec--CCCCcccHHHHHHHHHc----CCcCCCCCCc
Confidence 456788886642 1123333 56678999999732221 1789999643
No 119
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=32.63 E-value=5.5 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=13.3
Q ss_pred CCccCCCCCcccccchhc
Q 044718 67 GVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 67 sp~fDD~GnFYCPyC~YK 84 (236)
++.+..-.||.||||+.-
T Consensus 12 ~~~i~~f~D~~Cp~C~~~ 29 (186)
T 3bci_A 12 KPLVVVYGDYKCPYCKEL 29 (186)
T ss_dssp CCEEEEEECTTCHHHHHH
T ss_pred CeEEEEEECCCChhHHHH
Confidence 445666789999999743
No 120
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.00 E-value=10 Score=24.81 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=27.1
Q ss_pred CccceecCCCCC-eEEeeCCCCccccccccccCCC---------CccCCCCCcccccchhc
Q 044718 34 EEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSCG---------VEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 34 qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgss---------p~fDD~GnFYCPyC~YK 84 (236)
...|..|++.-. +.+.-. + ..||..|+.+. .-+...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAM--G--KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp CCEETTTTEECCSCEECCT--T--SBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCCCcccCCEecceEEEEC--c--cccccCcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 356777775322 133333 2 46888887652 12235678899888754
No 121
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.98 E-value=16 Score=24.57 Aligned_cols=44 Identities=27% Similarity=0.575 Sum_probs=27.1
Q ss_pred cceecCCC---CCeEEeeCCCCccccccccccCC---CC------ccCCCCCcccc-cchhc
Q 044718 36 PCIKCNRR---DENLLVCSQSGCLISVHENCLSC---GV------EFDDVGNFYRP-YCWYK 84 (236)
Q Consensus 36 ~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgs---sp------~fDD~GnFYCP-yC~YK 84 (236)
.|..|++. ++ .+.-. -..||..|+.+ .. -+...|..||. .|..+
T Consensus 2 ~C~~C~~~I~~~~-~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 58 (76)
T 1iml_A 2 KCPKCDKEVYFAE-RVTSL----GKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSA 58 (76)
T ss_dssp BCTTTSSBCCGGG-EEEET----TEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHH
T ss_pred cCCCCCCEEECce-EEEEC----CccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHH
Confidence 47777774 44 44433 35788888764 22 23356788898 58754
No 122
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.54 E-value=14 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=27.7
Q ss_pred CccceecCCCCC-eEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhc
Q 044718 34 EEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYK 84 (236)
Q Consensus 34 qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YK 84 (236)
...|..|++.-. +.+.-. -..||..|+.+. .+ +...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR----EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS----SSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCCcccCCeeccceEEEC----ccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 456888877432 123222 247888887652 12 235678889888754
No 123
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.26 E-value=14 Score=24.30 Aligned_cols=48 Identities=19% Similarity=0.457 Sum_probs=28.9
Q ss_pred CCccceecCCCCC-eEEeeCCCCccccccccccCC---CCc------cCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSC---GVE------FDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgs---sp~------fDD~GnFYCPyC~YK 84 (236)
....|..|++.-. +.+.-. ...||..|+.+ ..+ +...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQ----DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEET----TEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CcCCCcccCCEeCcceEEEC----ccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 4567888887532 133322 24688888764 222 235688899988754
No 124
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.38 E-value=26 Score=22.56 Aligned_cols=40 Identities=25% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
+...|..|...-.. +|.| --.|+..|+.. ....||.|...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~C-----gH~fC~~Ci~~-------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPC-----LHTLCSGCLEA-------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTT-----SCCSBTTTCSS-------SSSSCSSCCSS
T ss_pred cCCCceEeCCccCCeEEcCC-----CCcccHHHHcc-------CCCCCCcCCcE
Confidence 45567778654331 4444 45677777763 56789999754
No 125
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.46 E-value=18 Score=25.08 Aligned_cols=46 Identities=28% Similarity=0.470 Sum_probs=28.7
Q ss_pred CCccceecCCCCCe--------------EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDEN--------------LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq~--------------LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
+++.|..|-..-+. ++.-. .|--.||..|+..-+.. +--||.|...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSLWVKQ----NNRCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHHHTTT----CCBCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHHHHHh----CCCCCCcCCC
Confidence 56778888765431 21212 47789999999842221 2389999754
No 126
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.39 E-value=31 Score=22.57 Aligned_cols=47 Identities=21% Similarity=0.414 Sum_probs=29.7
Q ss_pred CccceecCCCCC---eEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchhc
Q 044718 34 EEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 34 qD~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~YK 84 (236)
...|..|++.-. .++.-. + ..||..|+.+. . -+...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYK--G--SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEET--T--EEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CCCCccCCCcccCCceEEEEC--c--CeecccCCcccccCCccCCCccCccCCeEECHHHHhH
Confidence 467889987544 255544 2 47899888752 1 2234577788888744
No 127
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=28.80 E-value=7 Score=28.85 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.1
Q ss_pred CccCCCCCcccccch
Q 044718 68 VEFDDVGNFYRPYCW 82 (236)
Q Consensus 68 p~fDD~GnFYCPyC~ 82 (236)
|.+.+-.+|-||+|.
T Consensus 23 ~~vvEf~dy~Cp~C~ 37 (184)
T 4dvc_A 23 PVVSEFFSFYCPHCN 37 (184)
T ss_dssp CEEEEEECTTCHHHH
T ss_pred CEEEEEECCCCHhHH
Confidence 456677899999996
No 128
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.49 E-value=8.4 Score=25.21 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=31.2
Q ss_pred CCCCCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 29 VDLLEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 29 ~e~~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
....+...|..|...-.. ++ .|--.||..|+..-. ..++..||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQT-----ECGHRFCESCMAALL---SSSSPKCTACQES 59 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCC-----SSSCCCCHHHHHHHH---TTSSCCCTTTCCC
T ss_pred hcCCcCCCCCCCChHhcCeeEC-----CCCCHHHHHHHHHHH---HhCcCCCCCCCcC
Confidence 344566778888654331 22 466778889988432 2567889999754
No 129
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.04 E-value=19 Score=24.22 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=28.4
Q ss_pred ccceecCCCCC-eEEeeCCCCccccccccccCC---C------CccCCCCCcccccchhch
Q 044718 35 EPCIKCNRRDE-NLLVCSQSGCLISVHENCLSC---G------VEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 35 D~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgs---s------p~fDD~GnFYCPyC~YKk 85 (236)
..|..|++.-. +.+.-. -..||..|+.+ . .-+...|..||..|+.++
T Consensus 16 ~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAM----DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CBCTTTCCBCCSSCEEET----TEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CccccCCCeecceeEEEC----CCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 57888876432 133333 25788888653 1 223356888999888654
No 130
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=27.72 E-value=60 Score=26.89 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=25.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhhccC
Q 044718 82 WYKCELMRTKELRKKAMETKKKLACFIDSK 111 (236)
Q Consensus 82 ~YKkav~~y~eaKKkA~~AKKeLssFL~s~ 111 (236)
|.......+.++|..+..+|++|..|....
T Consensus 137 ~l~~i~~~L~~~k~e~~~~~~~L~~~~~~~ 166 (167)
T 2r25_A 137 YLILIAKALNQSRLEFKLARIELSKYYNTN 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 346777889999999999999999998764
No 131
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=27.62 E-value=22 Score=27.52 Aligned_cols=12 Identities=17% Similarity=0.514 Sum_probs=9.8
Q ss_pred CCcccccchhch
Q 044718 74 GNFYRPYCWYKC 85 (236)
Q Consensus 74 GnFYCPyC~YKk 85 (236)
-||-|||||.-.
T Consensus 7 ~D~~CP~cy~~~ 18 (203)
T 2imf_A 7 FDFLSPFSYLAN 18 (203)
T ss_dssp ECTTCHHHHHHH
T ss_pred EeCCCHHHHHHH
Confidence 588999999764
No 132
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.50 E-value=13 Score=24.47 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCccceecCCC--CCeEEeeCCCCccccccccccCCC---Ccc------CCCCCcccccchhch
Q 044718 33 EEEPCIKCNRR--DENLLVCSQSGCLISVHENCLSCG---VEF------DDVGNFYRPYCWYKC 85 (236)
Q Consensus 33 ~qD~CikC~kd--Gq~LL~CSg~GCPlsvH~sCLgss---p~f------DD~GnFYCPyC~YKk 85 (236)
....|..|++. ++ .+.-. -..||..|+.+. .++ ...|..||..|..+.
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR-VIKAM----NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp CSSBCSSSCCBCCSC-CEEET----TEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCCcCccCCCEecce-EEEEC----cccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 45678888864 33 33333 257898888752 122 246788888887543
No 133
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.48 E-value=30 Score=23.02 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=27.6
Q ss_pred CccceecCCCCC------eEEeeCCCCccccccccccCCC---Ccc------CCCCCcccccch
Q 044718 34 EEPCIKCNRRDE------NLLVCSQSGCLISVHENCLSCG---VEF------DDVGNFYRPYCW 82 (236)
Q Consensus 34 qD~CikC~kdGq------~LL~CSg~GCPlsvH~sCLgss---p~f------DD~GnFYCPyC~ 82 (236)
...|..|++.-. .++.-. -..||..|+.+. .++ ...|..||+-|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy 74 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE----GQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET----TEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHH
T ss_pred CccCcccCCcccCCCCCceeEEEC----cceeCcccCEehhcCCCCCCCccEeECCEEEChHHh
Confidence 357888887433 255544 247888887752 222 345677888776
No 134
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=27.12 E-value=34 Score=21.82 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=22.3
Q ss_pred CccceecCCCC-CeEEeeCCCCccccccccccCCC
Q 044718 34 EEPCIKCNRRD-ENLLVCSQSGCLISVHENCLSCG 67 (236)
Q Consensus 34 qD~CikC~kdG-q~LL~CSg~GCPlsvH~sCLgss 67 (236)
-..|-.|++-- | =|.|. .|-+.+|.+|...-
T Consensus 14 pt~C~~C~~~l~q-G~~C~--~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFLLN-GFRCQ--TCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEECS-EEECT--TTTCCBCSTTSSSS
T ss_pred CcCCCCccccccc-CCEeC--CCCCeEChhHHhhC
Confidence 34566664421 5 57999 99999999999853
No 135
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.84 E-value=14 Score=25.42 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred CCccceecCCCCCe-EEeeCCCCccccccccccCCC---C-----ccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCG---V-----EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgss---p-----~fDD~GnFYCPyC~YK 84 (236)
....|..|++.=.. .|.- --..||..|+.+. . .|.-.|..||..|..+
T Consensus 14 ~~~~C~~C~~~I~~~~v~a----~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIF----KNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCC----SSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCCCccCCCEecceEEEE----CcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 45678888864321 2221 1246888777652 1 2445688899888654
No 136
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.50 E-value=20 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=11.3
Q ss_pred CCCCcccccchhc
Q 044718 72 DVGNFYRPYCWYK 84 (236)
Q Consensus 72 D~GnFYCPyC~YK 84 (236)
|..|||||.|.-.
T Consensus 53 PVaDF~C~~C~Ee 65 (257)
T 4esj_A 53 PVADFYCNHCSEE 65 (257)
T ss_dssp CCCEEECTTTCCE
T ss_pred cccccccCCcchh
Confidence 8999999999743
No 137
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=25.39 E-value=14 Score=29.31 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.0
Q ss_pred ccCCCCCcccccchhc
Q 044718 69 EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 69 ~fDD~GnFYCPyC~YK 84 (236)
+++---||-|||||.-
T Consensus 7 ~I~~~~D~~CP~Cy~~ 22 (226)
T 1r4w_A 7 VLELFYDVLSPYSWLG 22 (226)
T ss_dssp EEEEEECTTCHHHHHH
T ss_pred eEEEEEeCCChHHHHH
Confidence 4444668999999974
No 138
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.03 E-value=19 Score=24.34 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=27.6
Q ss_pred ccceecCCCCCe-EEeeCCCCccccccccccCC---CCccC-------CCCCcccccchhc
Q 044718 35 EPCIKCNRRDEN-LLVCSQSGCLISVHENCLSC---GVEFD-------DVGNFYRPYCWYK 84 (236)
Q Consensus 35 D~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgs---sp~fD-------D~GnFYCPyC~YK 84 (236)
..|..|++.-.. .|.-. -..||..|+.+ ..++. ..|..||+.|..+
T Consensus 6 ~~C~~C~~~I~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAG----EKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp CSCSSSCCCCSSCCBCCS----SCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CCcccCCCEecCeeEEeC----CCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 468888875331 33222 25789888775 22222 4577899999754
No 139
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=24.96 E-value=22 Score=26.11 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=26.1
Q ss_pred ccceecCCCCCe-EEeeCCCCccccccccccCCCC
Q 044718 35 EPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCGV 68 (236)
Q Consensus 35 D~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgssp 68 (236)
..|..|+..+.. .-.|+ .|-+.+|..|.-.++
T Consensus 48 ~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCD--ECDFDLHAKCALNED 80 (89)
T ss_dssp CCCTTTSCCCCSCEEECT--TTCCCCCHHHHHCSS
T ss_pred eEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCCCC
Confidence 568888887764 67898 899999999987543
No 140
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=24.88 E-value=15 Score=29.98 Aligned_cols=15 Identities=20% Similarity=0.549 Sum_probs=11.1
Q ss_pred CCCCCcccccchhch
Q 044718 71 DDVGNFYRPYCWYKC 85 (236)
Q Consensus 71 DD~GnFYCPyC~YKk 85 (236)
+=--|+.|||||.-.
T Consensus 9 ~~~~D~~CPwcyi~~ 23 (234)
T 3rpp_A 9 ELFYDVLSPYSWLGF 23 (234)
T ss_dssp EEEECTTCHHHHHHH
T ss_pred EEEEeCCCHHHHHHH
Confidence 334588999999764
No 141
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.88 E-value=21 Score=23.66 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.8
Q ss_pred CCCCcccc--cchh
Q 044718 72 DVGNFYRP--YCWY 83 (236)
Q Consensus 72 D~GnFYCP--yC~Y 83 (236)
-.|||.|| .|..
T Consensus 11 ~~GDW~C~~~~C~~ 24 (45)
T 1n0z_A 11 SDGDWICPDKKCGN 24 (45)
T ss_dssp CSSSCBCSSTTTCC
T ss_pred CCCCcCCCCCCCCC
Confidence 48999999 7864
No 142
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=24.62 E-value=15 Score=30.04 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=13.4
Q ss_pred CCccCCCCCcccccchh
Q 044718 67 GVEFDDVGNFYRPYCWY 83 (236)
Q Consensus 67 sp~fDD~GnFYCPyC~Y 83 (236)
++.+..-.||.||||.-
T Consensus 40 ~vtIvef~Dy~CP~C~~ 56 (226)
T 3f4s_A 40 PILMIEYASLTCYHCSL 56 (226)
T ss_dssp SEEEEEEECTTCHHHHH
T ss_pred CEEEEEEECCCCHHHHH
Confidence 45566788999999984
No 143
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.62 E-value=17 Score=24.67 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=29.2
Q ss_pred CccceecCCCCC---eEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhchH
Q 044718 34 EEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYKCE 86 (236)
Q Consensus 34 qD~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YKka 86 (236)
...|..|++.-. .++.-. -..||..|+.+. .+ +...|..||..|..+.-
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYE----DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCS----SCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred CCcCccCCCccccCcEEEEeC----CccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 346888887422 143332 256888887752 22 23467789999886543
No 144
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=24.50 E-value=31 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=24.7
Q ss_pred CCCccceecCCC--C---CeEEeeCCCCccccccccccCC
Q 044718 32 LEEEPCIKCNRR--D---ENLLVCSQSGCLISVHENCLSC 66 (236)
Q Consensus 32 ~~qD~CikC~kd--G---q~LL~CSg~GCPlsvH~sCLgs 66 (236)
..-..|-.|+.- | | -+.|. .|-+.+|.+|...
T Consensus 18 ~~pt~C~~C~~~l~Gl~~q-g~~C~--~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGLVKQ-GLKCE--DCGMNVHHKCREK 54 (65)
T ss_dssp SSCCBCTTTCCBCCSSSSC-EEEET--TTCCEECHHHHTT
T ss_pred CCCCcccccChhhhccCce-eeECC--CCCCeEchhHhhh
Confidence 345667777653 3 5 68999 9999999999885
No 145
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=24.29 E-value=19 Score=27.16 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=12.7
Q ss_pred CccCCCCCcccccchhch
Q 044718 68 VEFDDVGNFYRPYCWYKC 85 (236)
Q Consensus 68 p~fDD~GnFYCPyC~YKk 85 (236)
+.+..-.++.||+|+--.
T Consensus 24 ~~i~~f~d~~Cp~C~~~~ 41 (195)
T 2znm_A 24 IEVLEFFGYFCVHCHHFD 41 (195)
T ss_dssp EEEEEEECTTSCCTTSSC
T ss_pred cEEEEEECCCChhHHHHh
Confidence 344556689999998544
No 146
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=29 Score=23.47 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=27.8
Q ss_pred ccceecCCCCCe-EEeeCCCCccccccccccCCC---------Ccc--CCCCCcccccchhch
Q 044718 35 EPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCG---------VEF--DDVGNFYRPYCWYKC 85 (236)
Q Consensus 35 D~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgss---------p~f--DD~GnFYCPyC~YKk 85 (236)
..|..|++.-.. .+.-. -..||..|+.+. ..| +..|..||..|..+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAG----EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CBCTTTCCBCCSCCBCCT----TCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred CcCccCCCCcCceEEEEC----CceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 468888764331 22222 256888886641 223 467788998887553
No 147
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=23.23 E-value=16 Score=27.33 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.4
Q ss_pred CCCCcccccchh
Q 044718 72 DVGNFYRPYCWY 83 (236)
Q Consensus 72 D~GnFYCPyC~Y 83 (236)
+--+|.||+|+.
T Consensus 23 ef~d~~CP~C~~ 34 (195)
T 3c7m_A 23 KVFSYACPFCYK 34 (195)
T ss_dssp EEECTTCHHHHH
T ss_pred EEEeCcCcchhh
Confidence 345799999985
No 148
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=23.12 E-value=25 Score=27.61 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=10.2
Q ss_pred CCCcccccchhch
Q 044718 73 VGNFYRPYCWYKC 85 (236)
Q Consensus 73 ~GnFYCPyC~YKk 85 (236)
--|+.|||||.-.
T Consensus 10 ~~D~~cPwcyi~~ 22 (202)
T 3fz5_A 10 WFDFSSGYAFFAA 22 (202)
T ss_dssp EECTTCHHHHHHH
T ss_pred EEeCCCHHHHHHH
Confidence 4578999999754
No 149
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.80 E-value=26 Score=23.73 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=28.9
Q ss_pred CCccceecCCCCCe-EEeeCCCCccccccccccCCC---C-----cc--CCCCCcccccchhch
Q 044718 33 EEEPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCG---V-----EF--DDVGNFYRPYCWYKC 85 (236)
Q Consensus 33 ~qD~CikC~kdGq~-LL~CSg~GCPlsvH~sCLgss---p-----~f--DD~GnFYCPyC~YKk 85 (236)
....|..|++.-.. +|.=. -..||..|+.+. . .| +..|..||..|..++
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAM----GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEET----TEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred CCCccccCCCeecceeEEEC----CccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 34678888764321 33322 246888887752 1 22 235899999988654
No 150
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.51 E-value=16 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=29.2
Q ss_pred CCCCccceecCCCCC----eEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 31 LLEEEPCIKCNRRDE----NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 31 ~~~qD~CikC~kdGq----~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
..++..|-.|-..-. .++.| .|--.|+..|+. .+-..+++.||.|.-.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~---~CGH~fC~~Cl~---~~~~~~~~~CP~CR~~ 59 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPC---TCGYQICRFCWH---RIRTDENGLCPACRKP 59 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSS---TTSCCCCHHHHH---HHTTSSCSBCTTTCCB
T ss_pred cccCCcCCccCccCcccccccccc---CCCCCcCHHHHH---HHHhcCCCCCCCCCCc
Confidence 345667888877432 02222 155677777776 2333478999999744
No 151
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.51 E-value=18 Score=26.91 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=11.8
Q ss_pred CccCCCCCcccccchh
Q 044718 68 VEFDDVGNFYRPYCWY 83 (236)
Q Consensus 68 p~fDD~GnFYCPyC~Y 83 (236)
+.+..-.+|.||+|..
T Consensus 29 v~i~~f~D~~Cp~C~~ 44 (175)
T 1z6m_A 29 VKMIEFINVRCPYCRK 44 (175)
T ss_dssp EEEEEEECTTCHHHHH
T ss_pred eEEEEEECCCCcchHH
Confidence 4455567899999964
No 152
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=21.43 E-value=18 Score=27.15 Aligned_cols=16 Identities=19% Similarity=0.222 Sum_probs=11.6
Q ss_pred ccCCCCCcccccchhc
Q 044718 69 EFDDVGNFYRPYCWYK 84 (236)
Q Consensus 69 ~fDD~GnFYCPyC~YK 84 (236)
.+..-.++.||+|+.-
T Consensus 28 ~i~~f~d~~Cp~C~~~ 43 (193)
T 2rem_A 28 EVVEIFGYTCPHCAHF 43 (193)
T ss_dssp EEEEEECTTCHHHHHH
T ss_pred EEEEEECCCChhHhhh
Confidence 4455568999999743
No 153
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=21.02 E-value=15 Score=23.80 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718 33 EEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK 84 (236)
Q Consensus 33 ~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK 84 (236)
....|..|-..-..-..-- .|--.||..|+..-. .....||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~--~C~H~fc~~Ci~~~~----~~~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMAL--PCLHAFCYVCITRWI----RQNPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCCSCEEET--TTTEEESTTHHHHHH----HHSCSTTTTCCC
T ss_pred CCCCCeeCCccccCCcEec--CCCCeeHHHHHHHHH----hCcCcCcCCChh
Confidence 4567888877654211223 466789999987322 123589999643
No 154
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=20.99 E-value=11 Score=29.95 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=12.8
Q ss_pred CCccCCCCCcccccch
Q 044718 67 GVEFDDVGNFYRPYCW 82 (236)
Q Consensus 67 sp~fDD~GnFYCPyC~ 82 (236)
++++..-.+|.||+|.
T Consensus 30 ~vtvvef~D~~CP~C~ 45 (202)
T 3gha_A 30 PVTVVEFGDYKCPSCK 45 (202)
T ss_dssp SEEEEEEECTTCHHHH
T ss_pred CEEEEEEECCCChhHH
Confidence 4556677899999997
No 155
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=81 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCccceecCCC
Q 044718 24 GDFMDVDLLEEEPCIKCNRR 43 (236)
Q Consensus 24 ~~~~~~e~~~qD~CikC~kd 43 (236)
..|.+++ +...|..|...
T Consensus 6 ~~W~pd~--~~~~C~~C~~~ 23 (84)
T 1x4u_A 6 SGRYPTN--NFGNCTGCSAT 23 (84)
T ss_dssp CCSCSCC--CCSSCSSSCCC
T ss_pred CccccCC--CCCcCcCcCCc
Confidence 4488877 66788888776
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.76 E-value=20 Score=23.25 Aligned_cols=47 Identities=19% Similarity=0.416 Sum_probs=29.4
Q ss_pred CCccceecCCCCC---eEEeeCCCCccccccccccCCC---C------ccCCCCCcccccchh
Q 044718 33 EEEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCG---V------EFDDVGNFYRPYCWY 83 (236)
Q Consensus 33 ~qD~CikC~kdGq---~LL~CSg~GCPlsvH~sCLgss---p------~fDD~GnFYCPyC~Y 83 (236)
....|..|++.-. .++.-. + ..||..|+.+. . -+.-.|..||..|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSN--G--ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEET--T--EEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHH
T ss_pred CCccchhcCccccCCceEEEeC--c--CeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 4568999987533 244444 2 35899988742 1 223557888888864
No 157
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.53 E-value=29 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=27.5
Q ss_pred CccceecCCCCC-eEEeeCCCCccccccccccCCC---Cc------cCCCCCcccccchhch
Q 044718 34 EEPCIKCNRRDE-NLLVCSQSGCLISVHENCLSCG---VE------FDDVGNFYRPYCWYKC 85 (236)
Q Consensus 34 qD~CikC~kdGq-~LL~CSg~GCPlsvH~sCLgss---p~------fDD~GnFYCPyC~YKk 85 (236)
...|..|++.-. +.+.-. -..||..|+.+. .+ +...|..||..|..+.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYR----DQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp SCCCTTTCCCCCSCCEESS----SSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcCCCCCCEecCcEEEEC----CchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 356888876432 133322 246788777642 22 3356778888887543
No 158
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=20.14 E-value=24 Score=27.67 Aligned_cols=54 Identities=20% Similarity=0.475 Sum_probs=34.1
Q ss_pred CCCccceecCCCCCe----EEeeCCCCcccccc--------ccccCCC-CccCCCCCcccccchhchHH
Q 044718 32 LEEEPCIKCNRRDEN----LLVCSQSGCLISVH--------ENCLSCG-VEFDDVGNFYRPYCWYKCEL 87 (236)
Q Consensus 32 ~~qD~CikC~kdGq~----LL~CSg~GCPlsvH--------~sCLgss-p~fDD~GnFYCPyC~YKkav 87 (236)
.....|.+|+..... ++.|. +|..=|- ..|.... =..+..+.+.|.+|.|++=.
T Consensus 27 ~~~~~C~VCgd~a~G~HyGv~sC~--aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl 93 (117)
T 4hn5_A 27 APPKLCLVCSDEASGCHYGVLTCG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCL 93 (117)
T ss_dssp ---CBCTTTCSBCCEEETTEEECH--HHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHH
T ss_pred CCCCcCCcCCCcCcccccCCcccc--hhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHh
Confidence 355689999987763 88999 8963332 2454321 12345678899999988654
No 159
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.05 E-value=34 Score=21.57 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=23.1
Q ss_pred CccceecCCC-----CCeEEeeCCCCccccccccccCCC
Q 044718 34 EEPCIKCNRR-----DENLLVCSQSGCLISVHENCLSCG 67 (236)
Q Consensus 34 qD~CikC~kd-----Gq~LL~CSg~GCPlsvH~sCLgss 67 (236)
-..|-.|++- -| =+.|. .|-+.+|.+|...-
T Consensus 11 pt~C~~C~~~l~g~~~q-g~~C~--~C~~~~H~~C~~~v 46 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQ-GLKCE--DCGMNVHHKCREKV 46 (50)
T ss_dssp CCBCTTTCCBCCSSSSC-EEEET--TTCCEECHHHHTTS
T ss_pred CCCcCCCCceeeccCCc-cCEeC--CCCCeECHHHhhhc
Confidence 3457777542 25 67999 99999999998853
Done!