BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044720
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZX3|A Chain A, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|B Chain B, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|C Chain C, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|D Chain D, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
          Length = 452

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQ-DFLRLNHVEGYHQLSTKTRLYFSTAISIW- 223
           I I +++G   TPGG    A+D   A  Q  F+ LN      + S + RLY  T  +++ 
Sbjct: 166 ITINYLLGRFKTPGGSTFGALDLGGASTQITFVPLNSTLEAPETSLQFRLY-GTDYTVYT 224

Query: 224 --------DADFYVKVDDDVHVNLGMLV 243
                   D   + K+  D+ V+ G ++
Sbjct: 225 HSFLCYGKDQALWQKLAQDIQVSSGGIL 252


>pdb|1M11|1 Chain 1, Structural Model Of Human Decay-accelerating Factor Bound
           To Echovirus 7 From Cryo-electron Microscopy
          Length = 278

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 192 EHQDFLRLNHVEGYHQLSTKT-RLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244
           E  D ++  HV+ YH  S  T   + S +  ++  ++Y K  D+V+  +   +N
Sbjct: 43  EPSDTMQTRHVKNYHSRSESTVENFLSRSACVYIEEYYTKDQDNVNRYMSWTIN 96


>pdb|3IYP|A Chain A, The Interaction Of Decay-Accelerating Factor With
           Echovirus 7
 pdb|2X5I|A Chain A, Crystal Structure Echovirus 7
          Length = 292

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 192 EHQDFLRLNHVEGYHQLSTKT-RLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244
           E  D ++  HV+ YH  S  T   + S +  ++  ++Y K  D+V+  +   +N
Sbjct: 43  EPSDTMQTRHVKNYHSRSESTVENFLSRSACVYIEEYYTKDQDNVNRYMSWTIN 96


>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
 pdb|1SP8|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
 pdb|1SP8|C Chain C, 4-hydroxyphenylpyruvate Dioxygenase
 pdb|1SP8|D Chain D, 4-hydroxyphenylpyruvate Dioxygenase
          Length = 418

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 36  NNQQIPINFPNHVTKLADEVTSDCDHHDNKPLKSVGGKSVDVMGEVKRTHQAIQS 90
            N  +P+N P H TK   ++ +  DHH    ++ +   S DV+    RT + +Q+
Sbjct: 251 ENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVL----RTLREMQA 301


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,534,875
Number of Sequences: 62578
Number of extensions: 283522
Number of successful extensions: 608
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 12
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)