Query 044720
Match_columns 269
No_of_seqs 276 out of 1135
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.7E-71 3.6E-76 530.5 25.3 259 5-268 15-280 (408)
2 KOG2288 Galactosyltransferases 100.0 3.8E-42 8.3E-47 310.0 13.5 145 124-269 8-153 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 9.3E-33 2E-37 277.1 16.4 137 124-267 382-520 (636)
4 PF13334 DUF4094: Domain of un 100.0 2.3E-32 4.9E-37 215.6 8.5 94 7-108 1-95 (95)
5 KOG2287 Galactosyltransferases 100.0 6.3E-31 1.4E-35 249.3 16.0 136 126-267 94-233 (349)
6 PF01762 Galactosyl_T: Galacto 100.0 5E-30 1.1E-34 222.8 10.8 122 141-267 1-126 (195)
7 PTZ00210 UDP-GlcNAc-dependent 99.9 1.9E-24 4.1E-29 205.1 12.7 146 121-267 74-243 (382)
8 PF02434 Fringe: Fringe-like; 99.2 3.3E-11 7E-16 110.0 7.8 118 128-264 7-127 (252)
9 KOG2246 Galactosyltransferases 99.2 4.6E-11 9.9E-16 114.6 8.9 113 123-261 87-205 (364)
10 PLN03153 hypothetical protein; 97.8 7.1E-05 1.5E-09 74.8 8.7 115 127-261 122-247 (537)
11 KOG3708 Uncharacterized conser 92.4 0.23 5.1E-06 50.2 5.5 102 129-259 28-132 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 89.0 3.6 7.8E-05 35.1 9.2 116 129-260 3-123 (228)
13 PF00535 Glycos_transf_2: Glyc 87.2 12 0.00027 29.1 11.4 89 165-261 27-116 (169)
14 cd04192 GT_2_like_e Subfamily 86.7 15 0.00032 30.9 11.6 87 166-259 29-118 (229)
15 cd04187 DPM1_like_bac Bacteria 82.7 17 0.00037 29.8 10.0 89 165-261 29-117 (181)
16 PRK11204 N-glycosyltransferase 80.7 35 0.00076 32.6 12.6 64 181-249 96-159 (420)
17 TIGR03472 HpnI hopanoid biosyn 79.6 57 0.0012 31.0 14.0 81 165-250 70-152 (373)
18 TIGR03469 HonB hopene-associat 78.0 50 0.0011 31.6 12.7 82 165-249 70-158 (384)
19 cd04179 DPM_DPG-synthase_like 77.4 29 0.00062 28.2 9.6 88 166-261 29-117 (185)
20 cd02525 Succinoglycan_BP_ExoA 75.7 49 0.0011 28.1 12.4 87 165-260 31-118 (249)
21 cd06423 CESA_like CESA_like is 75.3 36 0.00077 26.3 10.7 37 214-250 68-104 (180)
22 cd06434 GT2_HAS Hyaluronan syn 73.1 41 0.00089 28.6 9.8 75 166-250 29-103 (235)
23 cd04195 GT2_AmsE_like GT2_AmsE 71.6 57 0.0012 27.0 10.9 74 181-260 43-118 (201)
24 cd04185 GT_2_like_b Subfamily 71.0 60 0.0013 27.0 10.8 46 212-258 68-114 (202)
25 COG4092 Predicted glycosyltran 69.0 22 0.00048 33.8 7.5 83 160-247 33-117 (346)
26 PRK14583 hmsR N-glycosyltransf 67.6 1.3E+02 0.0027 29.4 14.7 77 165-249 104-180 (444)
27 cd04188 DPG_synthase DPG_synth 67.1 70 0.0015 27.0 9.9 89 165-261 30-120 (211)
28 cd06421 CESA_CelA_like CESA_Ce 66.3 40 0.00087 28.5 8.2 36 216-251 76-111 (234)
29 cd02510 pp-GalNAc-T pp-GalNAc- 60.1 1.2E+02 0.0027 27.4 10.7 35 216-250 75-109 (299)
30 cd06439 CESA_like_1 CESA_like_ 59.7 1.1E+02 0.0025 26.2 14.3 44 216-259 101-145 (251)
31 cd04186 GT_2_like_c Subfamily 58.9 85 0.0018 24.5 10.3 30 221-250 71-100 (166)
32 cd04196 GT_2_like_d Subfamily 57.3 1.1E+02 0.0024 25.2 10.1 87 165-259 27-116 (214)
33 cd04184 GT2_RfbC_Mx_like Myxoc 55.2 1.2E+02 0.0026 25.0 12.6 35 215-249 74-108 (202)
34 PF10111 Glyco_tranf_2_2: Glyc 54.3 1.7E+02 0.0037 26.6 11.2 78 163-247 32-111 (281)
35 PF04666 Glyco_transf_54: N-Ac 53.6 1.1E+02 0.0023 29.0 9.3 37 224-260 169-208 (297)
36 cd06442 DPM1_like DPM1_like re 53.4 1.3E+02 0.0029 25.1 10.4 43 218-260 72-115 (224)
37 TIGR03111 glyc2_xrt_Gpos1 puta 53.0 2.3E+02 0.005 27.7 13.5 36 215-250 122-157 (439)
38 PF13506 Glyco_transf_21: Glyc 52.3 44 0.00095 28.6 6.1 42 209-250 16-57 (175)
39 PRK10714 undecaprenyl phosphat 51.0 1.6E+02 0.0034 27.7 10.1 88 165-260 38-126 (325)
40 cd06438 EpsO_like EpsO protein 50.3 1.4E+02 0.0031 24.5 9.8 48 214-261 70-118 (183)
41 cd06913 beta3GnTL1_like Beta 1 49.6 1.6E+02 0.0035 24.9 10.7 43 217-259 77-119 (219)
42 TIGR01556 rhamnosyltran L-rham 49.3 1.1E+02 0.0024 27.2 8.5 57 191-249 42-98 (281)
43 cd06427 CESA_like_2 CESA_like_ 49.2 1.8E+02 0.0038 25.2 12.4 36 215-250 75-110 (241)
44 cd00761 Glyco_tranf_GTA_type G 45.4 1.3E+02 0.0027 22.5 9.9 34 215-248 68-101 (156)
45 cd02526 GT2_RfbF_like RfbF is 43.1 2.1E+02 0.0045 24.2 9.3 52 193-246 46-97 (237)
46 PF06072 Herpes_US9: Alphaherp 42.0 25 0.00054 25.7 2.4 17 11-27 42-58 (60)
47 cd06420 GT2_Chondriotin_Pol_N 41.6 51 0.0011 26.7 4.6 35 216-250 71-105 (182)
48 cd06433 GT_2_WfgS_like WfgS an 41.4 61 0.0013 26.2 5.1 46 215-260 66-113 (202)
49 cd02514 GT13_GLCNAC-TI GT13_GL 39.6 52 0.0011 31.6 5.0 45 213-257 86-133 (334)
50 smart00786 SHR3_chaperone ER m 39.5 24 0.00052 31.7 2.4 29 7-35 6-40 (196)
51 cd02520 Glucosylceramide_synth 36.8 2.5E+02 0.0054 23.4 13.3 79 166-249 31-111 (196)
52 PF09258 Glyco_transf_64: Glyc 35.1 45 0.00098 30.4 3.6 39 222-260 73-111 (247)
53 PLN03181 glycosyltransferase; 35.1 1.8E+02 0.0039 29.3 7.8 92 143-237 108-211 (453)
54 PF08229 SHR3_chaperone: ER me 33.0 28 0.00061 31.2 1.8 29 7-35 6-40 (196)
55 PF03071 GNT-I: GNT-I family; 31.0 1.3E+02 0.0028 30.2 6.3 46 212-257 175-227 (434)
56 PF06306 CgtA: Beta-1,4-N-acet 30.7 1.8E+02 0.0039 28.3 6.9 65 183-247 128-198 (347)
57 cd02522 GT_2_like_a GT_2_like_ 30.6 1E+02 0.0022 25.8 4.9 35 217-251 65-99 (221)
58 PRK05454 glucosyltransferase M 30.4 4.9E+02 0.011 27.6 10.7 129 124-264 121-258 (691)
59 PLN02726 dolichyl-phosphate be 30.1 3.7E+02 0.008 23.3 13.2 88 165-260 40-130 (243)
60 PF09964 DUF2198: Uncharacteri 29.3 35 0.00075 26.0 1.5 21 9-29 47-67 (74)
61 PF11772 EpuA: DNA-directed RN 28.9 48 0.001 23.0 2.1 16 11-26 4-19 (47)
62 cd04191 Glucan_BSP_ModH Glucan 26.3 2.1E+02 0.0046 25.9 6.5 27 223-249 94-120 (254)
63 PRK10018 putative glycosyl tra 24.8 5.5E+02 0.012 23.6 12.6 33 216-248 77-109 (279)
64 KOG0810 SNARE protein Syntaxin 24.4 62 0.0013 30.8 2.6 29 71-99 191-219 (297)
65 PF04508 Pox_A_type_inc: Viral 24.3 1E+02 0.0023 18.4 2.6 19 88-106 3-21 (23)
66 PF11119 DUF2633: Protein of u 24.3 98 0.0021 22.6 3.0 34 1-34 1-37 (59)
67 PF13704 Glyco_tranf_2_4: Glyc 23.4 3.1E+02 0.0067 20.2 7.4 48 193-241 40-88 (97)
68 PF03742 PetN: PetN ; InterPr 23.1 88 0.0019 19.7 2.2 22 7-28 5-26 (29)
69 cd06435 CESA_NdvC_like NdvC_li 22.3 4.8E+02 0.01 22.0 10.9 36 215-250 73-110 (236)
70 COG1215 Glycosyltransferases, 22.0 6.7E+02 0.014 23.5 11.2 113 127-254 54-167 (439)
71 PLN03182 xyloglucan 6-xylosylt 20.4 5E+02 0.011 26.1 8.0 73 165-237 126-210 (429)
72 PHA03289 envelope glycoprotein 20.4 2.2E+02 0.0048 27.7 5.4 32 58-101 321-352 (352)
73 PF04846 Herpes_pp38: Herpesvi 20.1 76 0.0017 23.5 1.8 20 7-26 16-35 (63)
74 KOG2859 DNA repair protein, me 20.1 2.4E+02 0.0052 26.4 5.4 53 193-249 37-96 (293)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.7e-71 Score=530.47 Aligned_cols=259 Identities=55% Similarity=0.882 Sum_probs=231.9
Q ss_pred ccchhHHHHHHHHHHHhHHHhccCCCCCCCCCCCccccCCCcccc-cccccccCCCCCCCCCCCcccCCccchhhhhhhh
Q 044720 5 AASGKTLLALCIACFLAGSFFSTWTHTFHQDNNQQIPINFPNHVT-KLADEVTSDCDHHDNKPLKSVGGKSVDVMGEVKR 83 (269)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (269)
++|+||+++||++|||+|+|||||||..||+++..++ ++.+ +++++++++|+++.+.+| +++.+++|||+||++
T Consensus 15 ~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 15 VVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRT----TVTEAERLKLVSEGCDPKTLYQK-EVKRDSKDIIGEVSK 89 (408)
T ss_pred cccHHHHHHHHHHHHHHHHhhccccccCCcccccccc----ccchhhhhhhhcccccccccccc-ccccchhHHHHHHhh
Confidence 3689999999999999999999999999999988765 5555 999999999998631112 346799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC------CCCCCCCceEEEEEeCCCCCHHHHHHHHhhccCCchhh
Q 044720 84 THQAIQSLDKTISALEMELAVARTSHNDGQTSLGIA------SNHSLQRAFVVVGINTAFSSKKRRDSVRSSWMPTGEEL 157 (269)
Q Consensus 84 t~~~~~~~~k~~~~le~ela~~~~~~~~~~~~~~~~------~~~~~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l 157 (269)
||+|||+|||+|++||||||+|++.+..+.++.|.+ ....++++++||+|+|+|+|++||++||+|||++++.+
T Consensus 90 t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~ 169 (408)
T PLN03193 90 THNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKR 169 (408)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999766544444443 24567779999999999999999999999999998777
Q ss_pred hhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEE
Q 044720 158 RRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHV 237 (269)
Q Consensus 158 ~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfV 237 (269)
.+++.+.+|+++||+|+++++++.+++.|++|+++|||||++||+|+|.|||.||+++|+||.++|+|+||+|+|||+||
T Consensus 170 ~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfV 249 (408)
T PLN03193 170 KKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHV 249 (408)
T ss_pred cccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceE
Confidence 77877899999999999976677899999999999999999999999999999999999999999999999999999999
Q ss_pred ehHHHHHHHhcCCCCCceEEEEccccCcccC
Q 044720 238 NLGMLVNTLANHKSKPRIYIGCMKSGPVLSQ 268 (269)
Q Consensus 238 nl~~L~~~L~~~~~~~rlYiG~~~sgPV~~~ 268 (269)
|+++|+.+|+.++.++++|+|||++|||+.+
T Consensus 250 nv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~ 280 (408)
T PLN03193 250 NIATLGETLVRHRKKPRVYIGCMKSGPVLSQ 280 (408)
T ss_pred cHHHHHHHHHhcCCCCCEEEEecccCccccC
Confidence 9999999999988888999999999999875
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-42 Score=310.04 Aligned_cols=145 Identities=61% Similarity=1.050 Sum_probs=140.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEec-cc
Q 044720 124 LQRAFVVVGINTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLN-HV 202 (269)
Q Consensus 124 ~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld-~~ 202 (269)
+++++++|||.|+|++.+||+++|+|||+.++.++++|++++|.++||||+ ++.+++++++|++|+++|+|+|+|| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 678999999999999999999999999999999999999999999999999 4568999999999999999999999 99
Q ss_pred cCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEccccCcccCC
Q 044720 203 EGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMKSGPVLSQK 269 (269)
Q Consensus 203 DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~sgPV~~~k 269 (269)
|+|.+|+.||+.+|.||.++|+++||+|+|||+|||++.|...|++++.+|++|||||++|||+.+|
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~ 153 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQP 153 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999883
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.3e-33 Score=277.09 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=123.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEecccc
Q 044720 124 LQRAFVVVGINTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVE 203 (269)
Q Consensus 124 ~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~D 203 (269)
.++++|+|+|+|+|+|++||++||+|||+... . .+..++++|++|.+. ++.++..|..|+++|||||++||.|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~-~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA----V-RSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc----c-CCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeeec
Confidence 45689999999999999999999999998642 1 345689999999875 5678899999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc--ccCccc
Q 044720 204 GYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK--SGPVLS 267 (269)
Q Consensus 204 sY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~--sgPV~~ 267 (269)
+|+|||+||++++.|+..|++++|++|+|||+|||+++|+.+|......+++|+|++. ..|+|.
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd 520 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccC
Confidence 9999999999999999989999999999999999999999999887777789999998 467775
No 4
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.97 E-value=2.3e-32 Score=215.60 Aligned_cols=94 Identities=44% Similarity=0.586 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHHhHHHhccCCCCCCCCCCCccccCCCcccc-cccccccCCCCCCCCCCCcccCCccchhhhhhhhHH
Q 044720 7 SGKTLLALCIACFLAGSFFSTWTHTFHQDNNQQIPINFPNHVT-KLADEVTSDCDHHDNKPLKSVGGKSVDVMGEVKRTH 85 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (269)
|+||+++||+||||+|+|||||||..||+++..... .+.. +++++++++|+++. .++.+++|+|+||+|||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~---~~~~~~~l~l~s~~c~~k~-----~~~~~~~di~~eV~kTh 72 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRS---SQDAEERLQLVSEDCDPKK-----LKESDQRDIMGEVSKTH 72 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhh---ccccccccccccccccccc-----cccCCccchhHHHHHHH
Confidence 689999999999999999999999999998887641 2233 88999999999862 23578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 044720 86 QAIQSLDKTISALEMELAVARTS 108 (269)
Q Consensus 86 ~~~~~~~k~~~~le~ela~~~~~ 108 (269)
+|||+|||+|++||||||+||++
T Consensus 73 ~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 73 EAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=249.28 Aligned_cols=136 Identities=23% Similarity=0.371 Sum_probs=123.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCC
Q 044720 126 RAFVVVGINTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGY 205 (269)
Q Consensus 126 ~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY 205 (269)
.++++++|.|++++++||++||+|||++.. ..+..++++|++|.++..+ .++..+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 2467899999999987544 6689999999999999999999999
Q ss_pred CchhHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcC-CCCCceEEEEccc--cCccc
Q 044720 206 HQLSTKTRLYFSTAIS-IWDADFYVKVDDDVHVNLGMLVNTLANH-KSKPRIYIGCMKS--GPVLS 267 (269)
Q Consensus 206 ~nLt~Ktl~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~rlYiG~~~s--gPV~~ 267 (269)
.|||+||++++.|+.+ |++++|++|+|||||||+++|+.+|..+ .+.+.+|+|.+.. .|+|.
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~ 233 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRD 233 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCC
Confidence 9999999999999998 7789999999999999999999999999 8899999999884 56554
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.96 E-value=5e-30 Score=222.81 Aligned_cols=122 Identities=34% Similarity=0.511 Sum_probs=105.2
Q ss_pred HHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHh
Q 044720 141 KRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAI 220 (269)
Q Consensus 141 ~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~ 220 (269)
+||++||+||++... ....++.++||+|.+.+.+..++..|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999853 135789999999999755678888899999999999999999999999999999999999
Q ss_pred hcC-CccEEEEeCCceEEehHHHHHHHhcC--C-CCCceEEEEccccCccc
Q 044720 221 SIW-DADFYVKVDDDVHVNLGMLVNTLANH--K-SKPRIYIGCMKSGPVLS 267 (269)
Q Consensus 221 ~~~-~a~F~lKvDDDvfVnl~~L~~~L~~~--~-~~~rlYiG~~~sgPV~~ 267 (269)
++| +++|++|+|||+|||+++|..+|... . ....+|.|++..+|+.+
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r 126 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIR 126 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCcccc
Confidence 865 59999999999999999999999997 2 34556666776655544
No 7
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.91 E-value=1.9e-24 Score=205.13 Aligned_cols=146 Identities=20% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCCCCCceEEEEEeCCCCC--HHHHHHHHhhccCCchhh-hhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEE
Q 044720 121 NHSLQRAFVVVGINTAFSS--KKRRDSVRSSWMPTGEEL-RRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFL 197 (269)
Q Consensus 121 ~~~~~~~~lvI~I~Sap~~--~~rR~aIR~TW~~~~~~l-~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL 197 (269)
....++.++++||.|...+ +.||++.|+||.+-..-. +...-...+.++|++|..++.+-+.+.++.+|+++|||||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4667889999999999998 899999999999864322 2222234577899999998766799999999999999999
Q ss_pred Eecc------------------ccCCCchhHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEE
Q 044720 198 RLNH------------------VEGYHQLSTKTRLYFSTAIS-IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIG 258 (269)
Q Consensus 198 ~ld~------------------~DsY~nLt~Ktl~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG 258 (269)
++|| .|+|.++|.||+++|+||.. |++++|++|+|||+|||++.++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 67778899999999999999 4599999999999999999999999764 56679999
Q ss_pred Eccc--cCccc
Q 044720 259 CMKS--GPVLS 267 (269)
Q Consensus 259 ~~~s--gPV~~ 267 (269)
.+.. .|.+.
T Consensus 233 ~v~~~~~p~Rd 243 (382)
T PTZ00210 233 RYNYYNRIWRR 243 (382)
T ss_pred eeCCCCccccC
Confidence 8873 44543
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.21 E-value=3.3e-11 Score=109.95 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCHH-HHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCC
Q 044720 128 FVVVGINTAFSSKK-RRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYH 206 (269)
Q Consensus 128 ~lvI~I~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~ 206 (269)
.++|+|+|++.+.+ |=.+|++||++... .. .|+.... .+..+..+ .-.+++.-+...++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~---------~~--~~ifsd~------~d~~l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN---------KQ--TFIFSDA------EDPSLPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG---------GG--EEEEESS--------HHHHHH--HGGGEEE--------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC---------Cc--eEEecCc------cccccccc--cccccccCCCcchhh
Confidence 57899999998665 55999999999863 11 3432211 13333333 223455555555544
Q ss_pred chhHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc-ccC
Q 044720 207 QLSTKTRLYFSTAIS-IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK-SGP 264 (269)
Q Consensus 207 nLt~Ktl~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~-sgP 264 (269)
...++.++.+.+... ..+++|++++|||+||++++|..+|..+++...+|+|+.. .+|
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~ 127 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRP 127 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCcc
Confidence 444555544444332 3588999999999999999999999999999999999875 344
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.20 E-value=4.6e-11 Score=114.57 Aligned_cols=113 Identities=22% Similarity=0.323 Sum_probs=91.4
Q ss_pred CCCCceEEEEEeCCCCCHHHH-HHHHhhccCCchhhhhhhccCcEEEEEEe---ecCCCCCCchhHHHHHHhhhCCCEEE
Q 044720 123 SLQRAFVVVGINTAFSSKKRR-DSVRSSWMPTGEELRRMEKEKGIVIRFVI---GHSATPGGVLDKAIDAEDAEHQDFLR 198 (269)
Q Consensus 123 ~~~~~~lvI~I~Sap~~~~rR-~aIR~TW~~~~~~l~kLe~~~~i~v~Fvv---G~s~~~~~~~~~~I~~E~~~~~DIL~ 198 (269)
-.++..+++.|.|++.+..-| +.+-+||++.++. ..|+- +... . .+. .|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~---~-----------~f~-~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD---S-----------RFP-TVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC---C-----------cCc-eee
Confidence 356678999999999877766 7999999998741 23433 2221 1 111 336
Q ss_pred eccccCCCchhHHHHHHHHHHhhc--CCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc
Q 044720 199 LNHVEGYHQLSTKTRLYFSTAISI--WDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK 261 (269)
Q Consensus 199 ld~~DsY~nLt~Ktl~~~~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~ 261 (269)
.+..|+|+++..||..+|+++.++ -+++||+|+|||+|+.++||..+|..++|.+.+|+|+..
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~ 205 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS 205 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc
Confidence 788999999999999999999853 499999999999999999999999999999999999965
No 10
>PLN03153 hypothetical protein; Provisional
Probab=97.82 E-value=7.1e-05 Score=74.83 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=69.3
Q ss_pred ceEEEEEeCCCCCH-HHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEecccc--
Q 044720 127 AFVVVGINTAFSSK-KRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVE-- 203 (269)
Q Consensus 127 ~~lvI~I~Sap~~~-~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~D-- 203 (269)
--++++|.++.... +|+..|+.+|.+.. -. ..+|+...... ...+.. ---| .+.-..
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~r--g~v~ld~~~~~--~~~~~~-------~P~i-~is~d~s~ 181 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MR--GHVWLEEQVSP--EEGDDS-------LPPI-MVSEDTSR 181 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCccc--------ce--eEEEecccCCC--CCCcCC-------CCCE-EeCCCccc
Confidence 46788999988766 56699999999852 11 13555433211 000000 0001 110000
Q ss_pred -CCCc---hhHHHHH--HHHHHhh--cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc
Q 044720 204 -GYHQ---LSTKTRL--YFSTAIS--IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK 261 (269)
Q Consensus 204 -sY~n---Lt~Ktl~--~~~wa~~--~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~ 261 (269)
.|.| ......+ +...+.. .++++||+.+|||+|+.+++|+.+|..+++++..|+|...
T Consensus 182 f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~S 247 (537)
T PLN03153 182 FRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPS 247 (537)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccc
Confidence 1332 2221111 2222333 5799999999999999999999999999999999999543
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.23 Score=50.16 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCch
Q 044720 129 VVVGINTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQL 208 (269)
Q Consensus 129 lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nL 208 (269)
++++|+|.. .---+|-.|-+.+- -++.|+++.+... +|.-++..+..|..-
T Consensus 28 l~~aVmte~---tlA~a~NrT~ahhv-----------prv~~F~~~~~i~---------------~~~a~~~~vs~~d~r 78 (681)
T KOG3708|consen 28 LMAAVMTES---TLALAINRTLAHHV-----------PRVHLFADSSRID---------------NDLAQLTNVSPYDLR 78 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHhhc-----------ceeEEeecccccc---------------ccHhhccccCccccC
Confidence 446777721 44456666666442 2567777765321 233334444445444
Q ss_pred hHHHH-HHHHHHhhc--CCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEE
Q 044720 209 STKTR-LYFSTAISI--WDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGC 259 (269)
Q Consensus 209 t~Ktl-~~~~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~ 259 (269)
..|+. +.+.+..++ -++||++-+-|++|||...|+.++....-...+|+|-
T Consensus 79 ~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 79 GQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred ccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 44443 445666664 3899999999999999999999999888788999984
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=88.99 E-value=3.6 Score=35.14 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=56.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCE--EEeccccCCC
Q 044720 129 VVVGINTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDF--LRLNHVEGYH 206 (269)
Q Consensus 129 lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DI--L~ld~~DsY~ 206 (269)
+.|+|.+......-++.++.--.... ..+.++++...+ ++.....+.+-.+.|... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~---------~~~~v~vvd~~~---~~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDY---------PRLEVVVVDDGS---DDETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHH---------HTEEEEEEEE-S---SS-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCC---------CCeEEEEEECCC---ChHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 44555554444445555555443211 235666666433 233334455555666653 222221 2
Q ss_pred ch--hHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC-CCCCceEEEEc
Q 044720 207 QL--STKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH-KSKPRIYIGCM 260 (269)
Q Consensus 207 nL--t~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~rlYiG~~ 260 (269)
|. ..|.. .+.++.+..+++|++.+|||+.+..+.|..++... .+.-....|.+
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 22 13333 44666666789999999999999999888877776 34444444444
No 13
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=87.19 E-value=12 Score=29.09 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=47.5
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.+++|-..+ .+.....+.+-.+....+-.+...+.. .+.. .+..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s---~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~----~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGS---TDETEEILEEYAESDPNIRYIRNPENL-GFSA----ARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS----SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHH----HHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEecccc---ccccccccccccccccccccccccccc-cccc----cccccccccceeEEEEeCCCceEcHHHHHH
Confidence 35555555433 233444444433334556666665544 2222 333444445666999999999999886666
Q ss_pred HHhcCCC-CCceEEEEcc
Q 044720 245 TLANHKS-KPRIYIGCMK 261 (269)
Q Consensus 245 ~L~~~~~-~~rlYiG~~~ 261 (269)
++..... ...+.+|...
T Consensus 99 l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhCCCcEEEEEEE
Confidence 6665443 3445555544
No 14
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.71 E-value=15 Score=30.90 Aligned_cols=87 Identities=22% Similarity=0.158 Sum_probs=50.2
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhh--CCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAE--HQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLV 243 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~--~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 243 (269)
+.++.|-..+. +.....+. +... +..+..++..+. .| ..|. ..+.++......+|++.+|+|..+..+.|.
T Consensus 29 ~eiivvdd~s~---d~t~~~~~-~~~~~~~~~v~~~~~~~~-~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST---DGTVQILE-FAAAKPNFQLKILNNSRV-SI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC---cChHHHHH-HHHhCCCcceEEeeccCc-cc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 56666655432 22333344 2223 334555555442 22 2333 335666667789999999999999988888
Q ss_pred HHHhcCC-CCCceEEEE
Q 044720 244 NTLANHK-SKPRIYIGC 259 (269)
Q Consensus 244 ~~L~~~~-~~~rlYiG~ 259 (269)
..+..+. +...++.|.
T Consensus 102 ~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 102 TFVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHHHhhcCCCcEEeee
Confidence 8887543 233344443
No 15
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=82.71 E-value=17 Score=29.84 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=54.0
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.++.|-+.+. +.....+.+...++..+..+.+..++. + -.++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~---d~t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST---DRTLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC---ccHHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 456666655442 223333444455666666666544332 2 23344455555679999999999999887877
Q ss_pred HHhcCCCCCceEEEEcc
Q 044720 245 TLANHKSKPRIYIGCMK 261 (269)
Q Consensus 245 ~L~~~~~~~rlYiG~~~ 261 (269)
.+....+...+.+|...
T Consensus 101 l~~~~~~~~~~v~g~~~ 117 (181)
T cd04187 101 MLAKWEEGYDVVYGVRK 117 (181)
T ss_pred HHHHHhCCCcEEEEEec
Confidence 77765455566667644
No 16
>PRK11204 N-glycosyltransferase; Provisional
Probab=80.70 E-value=35 Score=32.57 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=43.5
Q ss_pred chhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 181 VLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 181 ~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
.....+++..++|..+..++..++ . .|. ..++.+.+..+.+|++..|+|..+..+.|...++..
T Consensus 96 ~t~~~l~~~~~~~~~v~~i~~~~n---~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 96 NTGEILDRLAAQIPRLRVIHLAEN---Q-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred cHHHHHHHHHHhCCcEEEEEcCCC---C-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 344445555666666666554332 2 243 345666666789999999999999999888887765
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=79.63 E-value=57 Score=30.97 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=48.0
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCC--EEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQD--FLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGML 242 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~D--IL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 242 (269)
.+.++|+...+ ++.....+++=.++|.+ +..+. ...-.....|.-...+ +.+..+.+|++.+|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s---~D~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDP---DDPALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCC---CCcHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 36777776544 22222233333456666 32221 1111223356655443 445678999999999999999998
Q ss_pred HHHHhcCC
Q 044720 243 VNTLANHK 250 (269)
Q Consensus 243 ~~~L~~~~ 250 (269)
...+....
T Consensus 145 ~~lv~~~~ 152 (373)
T TIGR03472 145 RQVVAPLA 152 (373)
T ss_pred HHHHHHhc
Confidence 88877653
No 18
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=78.02 E-value=50 Score=31.58 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=45.1
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCC---CEEEeccccCCCchhHHHH---HHHHHHhh-cCCccEEEEeCCceEE
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQ---DFLRLNHVEGYHQLSTKTR---LYFSTAIS-IWDADFYVKVDDDVHV 237 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~---DIL~ld~~DsY~nLt~Ktl---~~~~wa~~-~~~a~F~lKvDDDvfV 237 (269)
.+.+++|-..|. |+ ....+.+-.++|. .+..+...+.-.+-..|.. .+++.+.+ ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~St--D~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHST--DG-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCC--Cc-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 356776665542 22 2222222223343 3544443222222234533 34555543 2348999999999999
Q ss_pred ehHHHHHHHhcC
Q 044720 238 NLGMLVNTLANH 249 (269)
Q Consensus 238 nl~~L~~~L~~~ 249 (269)
..+.|...+...
T Consensus 147 ~p~~l~~lv~~~ 158 (384)
T TIGR03469 147 GPDNLARLVARA 158 (384)
T ss_pred ChhHHHHHHHHH
Confidence 988888877654
No 19
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=77.43 E-value=29 Score=28.22 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=53.9
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNT 245 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 245 (269)
+.++.+-..+ .+.....+..-..++..+..+...+... .-.++..+.+....+|++..|+|..+..+.|...
T Consensus 29 ~eiivvd~~s---~d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGS---TDGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCC---CCChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 4455444333 2334445555566666665555554443 1234445555555699999999999999888888
Q ss_pred Hhc-CCCCCceEEEEcc
Q 044720 246 LAN-HKSKPRIYIGCMK 261 (269)
Q Consensus 246 L~~-~~~~~rlYiG~~~ 261 (269)
+.. ..+...+..|...
T Consensus 101 ~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 101 LEKLLEGGADVVIGSRF 117 (185)
T ss_pred HHHHhccCCcEEEEEee
Confidence 886 4445556666543
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=75.66 E-value=49 Score=28.09 Aligned_cols=87 Identities=16% Similarity=0.081 Sum_probs=49.3
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.++.+-+.+. +.....+....+++..+....-.+. ... .++..+.+....+|++.+|||..+..+.|..
T Consensus 31 ~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~ 101 (249)
T cd02525 31 LIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYILE 101 (249)
T ss_pred ccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHHH
Confidence 456666655442 2334444444444433444432211 111 3456666656899999999999999888888
Q ss_pred HHhcCCC-CCceEEEEc
Q 044720 245 TLANHKS-KPRIYIGCM 260 (269)
Q Consensus 245 ~L~~~~~-~~rlYiG~~ 260 (269)
.+..... ...+..|+.
T Consensus 102 ~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 102 LVEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHHhcCCCCEEecce
Confidence 8765433 233444544
No 21
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=75.30 E-value=36 Score=26.30 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 214 LYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 214 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
..+.++.+..+.+|++.+|+|.++..+.|..++....
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 104 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFF 104 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhc
Confidence 3445566666999999999999998887777745443
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.09 E-value=41 Score=28.60 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=45.0
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNT 245 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 245 (269)
..+++|...+. +.....+ .+...+..+.... .+. ..|.. .+..+....+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45555554432 2222222 3455566665554 221 22332 2334444458999999999999999998888
Q ss_pred HhcCC
Q 044720 246 LANHK 250 (269)
Q Consensus 246 L~~~~ 250 (269)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 88764
No 23
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=71.64 E-value=57 Score=26.98 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=43.5
Q ss_pred chhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC--CCCceEEE
Q 044720 181 VLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK--SKPRIYIG 258 (269)
Q Consensus 181 ~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~--~~~rlYiG 258 (269)
.....+++-.++++ +..+...++.. + -.++..+....+.+|++..|+|.++..+.|...+.... +.-.++.|
T Consensus 43 ~t~~~~~~~~~~~~-i~~i~~~~n~G----~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (201)
T cd04195 43 SLNEVLEEFKRKLP-LKVVPLEKNRG----L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGG 116 (201)
T ss_pred hHHHHHHHHHhcCC-eEEEEcCcccc----H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcc
Confidence 34444444445555 55454443321 1 12345555566899999999999999888888777643 23334444
Q ss_pred Ec
Q 044720 259 CM 260 (269)
Q Consensus 259 ~~ 260 (269)
.+
T Consensus 117 ~~ 118 (201)
T cd04195 117 GV 118 (201)
T ss_pred cE
Confidence 43
No 24
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.02 E-value=60 Score=27.00 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC-CCCceEEE
Q 044720 212 TRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK-SKPRIYIG 258 (269)
Q Consensus 212 tl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~rlYiG 258 (269)
.-.+++++. ..+.+|++..|||..+..+.|...+.... +...++.|
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 114 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAP 114 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecc
Confidence 344566666 56899999999999999877776666543 33334443
No 25
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.00 E-value=22 Score=33.78 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=61.8
Q ss_pred hhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccc--cCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEE
Q 044720 160 MEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHV--EGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHV 237 (269)
Q Consensus 160 Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~--DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfV 237 (269)
.....++-++|+-|.+ ..++.|..=.....-.+.+++- +.+...+.-...+..|+.+.|...+++..|=|+|.
T Consensus 33 fts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~ 107 (346)
T COG4092 33 FTSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFG 107 (346)
T ss_pred ccccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccc
Confidence 3345667777777764 4566666666666667777753 44554455566788899999999999999999999
Q ss_pred ehHHHHHHHh
Q 044720 238 NLGMLVNTLA 247 (269)
Q Consensus 238 nl~~L~~~L~ 247 (269)
..++..+.|.
T Consensus 108 S~dnF~k~l~ 117 (346)
T COG4092 108 SSDNFAKMLS 117 (346)
T ss_pred cHHHHHHHHH
Confidence 9999999883
No 26
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.60 E-value=1.3e+02 Score=29.42 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=48.0
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.+++|...+ ++.....+++..++|..+......+ |. .|. .+++.+....+.+|++-.|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs---~D~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGS---SDDTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCC---CccHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 45655554433 2334444555556666654444322 22 243 3456666667899999999999999998888
Q ss_pred HHhcC
Q 044720 245 TLANH 249 (269)
Q Consensus 245 ~L~~~ 249 (269)
.+...
T Consensus 176 lv~~~ 180 (444)
T PRK14583 176 LVAPL 180 (444)
T ss_pred HHHHH
Confidence 77654
No 27
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=67.13 E-value=70 Score=26.96 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=53.0
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCE-EEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDF-LRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLV 243 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DI-L~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 243 (269)
.+.++.|-+.+. +.....+.+..++++.. ..+....+.. +. .++..+.+....+|++.+|+|..+..+.+.
T Consensus 30 ~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNRG----KG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCCC----cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 466676655442 23344455555666664 2333332221 11 233344444567999999999999999888
Q ss_pred HHHhc-CCCCCceEEEEcc
Q 044720 244 NTLAN-HKSKPRIYIGCMK 261 (269)
Q Consensus 244 ~~L~~-~~~~~rlYiG~~~ 261 (269)
.++.. ......+.+|...
T Consensus 102 ~l~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 102 KLEEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHHHhccCCcEEEEEee
Confidence 88886 3445567777544
No 28
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=66.33 E-value=40 Score=28.50 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCC
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHKS 251 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 251 (269)
+..+.+..+.+|++.+|+|+++..+.|...+.....
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 345555568999999999999999888888876543
No 29
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=60.11 E-value=1.2e+02 Score=27.35 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
...+......+|++..|+|+.+..+-|..++....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 44444556789999999999999877777776543
No 30
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=59.67 E-value=1.1e+02 Score=26.22 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC-CCCceEEEE
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK-SKPRIYIGC 259 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~rlYiG~ 259 (269)
+..+.+....+|++-+|+|+++..+.|...+.... +...+..|.
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 145 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGE 145 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeE
Confidence 44555556679999999999999877777777653 333344443
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.87 E-value=85 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.7
Q ss_pred hcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 221 SIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 221 ~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
+..+.+|++..|||..+..+.+...+....
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHH
Confidence 344899999999999999988888877543
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.34 E-value=1.1e+02 Score=25.24 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=48.2
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCC-CEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQ-DFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLV 243 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~-DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 243 (269)
.+.+++|-..+. + .....+.+-..+|+ .+.......+.. . ...+..+......+|++..|+|.++..+.|.
T Consensus 27 ~~eiiVvddgS~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~G-~----~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--D-GTVEIIKEYIDKDPFIIILIRNGKNLG-V----ARNFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--C-CcHHHHHHHHhcCCceEEEEeCCCCcc-H----HHHHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466676654432 2 23333444444454 333333333322 1 2223334556789999999999999988888
Q ss_pred HHHhc-C-CCCCceEEEE
Q 044720 244 NTLAN-H-KSKPRIYIGC 259 (269)
Q Consensus 244 ~~L~~-~-~~~~rlYiG~ 259 (269)
..+.. . .+...++.|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHHHHHhcCCCceEEecC
Confidence 88775 2 2344444443
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=55.19 E-value=1.2e+02 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
++.++.+....+|++..|+|..+..+.|...++..
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 34555555678999999999999998888888765
No 34
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=54.28 E-value=1.7e+02 Score=26.55 Aligned_cols=78 Identities=10% Similarity=0.020 Sum_probs=49.6
Q ss_pred cCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCE-EE-eccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehH
Q 044720 163 EKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDF-LR-LNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLG 240 (269)
Q Consensus 163 ~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DI-L~-ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~ 240 (269)
...+.+++|-+.+. ......|.+-.+.++-+ ++ .+-...+.+.+ .+..-+.+....+|++..|.|+++..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34677777766542 33446677777776765 22 22221122222 123445556699999999999999999
Q ss_pred HHHHHHh
Q 044720 241 MLVNTLA 247 (269)
Q Consensus 241 ~L~~~L~ 247 (269)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9999888
No 35
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=53.65 E-value=1.1e+02 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=25.8
Q ss_pred CccEEEEeCCceEEehH---HHHHHHhcCCCCCceEEEEc
Q 044720 224 DADFYVKVDDDVHVNLG---MLVNTLANHKSKPRIYIGCM 260 (269)
Q Consensus 224 ~a~F~lKvDDDvfVnl~---~L~~~L~~~~~~~rlYiG~~ 260 (269)
.++||+-..|||..-.. .+..++......+-+|+.+-
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W~~LeFs 208 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDWLYLEFS 208 (297)
T ss_pred cCCeEEEecCCeEechhHHHHHHHHHHHhcCCCceEEEee
Confidence 68899999999998765 44555555545555666543
No 36
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=53.41 E-value=1.3e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHhhcCCccEEEEeCCceEEehHHHHHHHhc-CCCCCceEEEEc
Q 044720 218 TAISIWDADFYVKVDDDVHVNLGMLVNTLAN-HKSKPRIYIGCM 260 (269)
Q Consensus 218 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~~~~~rlYiG~~ 260 (269)
.+.+....+|++.+|+|..+..+.|...+.. ..+...+.+|..
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 3333345699999999999999888888886 345556666643
No 37
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=53.03 E-value=2.3e+02 Score=27.66 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
++.++.+..+.+|++..|+|..+..+.|...+....
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 456667777899999999999999999888887654
No 38
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=52.31 E-value=44 Score=28.56 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 209 STKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 209 t~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
..|+-..........++++++-.|+|+.|+.+.|...+....
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~ 57 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLA 57 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHh
Confidence 467766555433347899999999999999999999888764
No 39
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=51.05 E-value=1.6e+02 Score=27.66 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=51.0
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCC-EEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQD-FLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLV 243 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~D-IL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 243 (269)
.+.+++|-..|. |. ....+.+-.+.+++ ++...+..++. |.- ++..+.++.+.+|++-.|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~--D~-T~~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSS--DN-SAEMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCC--Cc-HHHHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 467888876553 22 22233333344444 44444444443 111 22333344578999999999999999888
Q ss_pred HHHhcCCCCCceEEEEc
Q 044720 244 NTLANHKSKPRIYIGCM 260 (269)
Q Consensus 244 ~~L~~~~~~~rlYiG~~ 260 (269)
.+++.......+..|..
T Consensus 110 ~l~~~~~~~~DvV~~~r 126 (325)
T PRK10714 110 RLVAKADEGYDVVGTVR 126 (325)
T ss_pred HHHHHHHhhCCEEEEEE
Confidence 88887543334555543
No 40
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=50.30 E-value=1.4e+02 Score=24.52 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc
Q 044720 214 LYFSTAIS-IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK 261 (269)
Q Consensus 214 ~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~ 261 (269)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~ 118 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN 118 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe
Confidence 34555432 3468999999999999988888888776555567777654
No 41
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=49.60 E-value=1.6e+02 Score=24.88 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEE
Q 044720 217 STAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGC 259 (269)
Q Consensus 217 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~ 259 (269)
..+.+....+|++.+|+|.++..+.+...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4455556889999999999999888776655543333345555
No 42
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=49.29 E-value=1.1e+02 Score=27.23 Aligned_cols=57 Identities=7% Similarity=0.000 Sum_probs=35.9
Q ss_pred hhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 191 AEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 191 ~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
+.+..|..+...++.. ...=--.++++|.+ .+++|++..|||+.+..+.|...+...
T Consensus 42 ~~~~~i~~i~~~~N~G-~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 42 LRGQKIALIHLGDNQG-IAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred ccCCCeEEEECCCCcc-hHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 3445565555443332 22222335667654 378999999999999987777766543
No 43
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=49.19 E-value=1.8e+02 Score=25.22 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
.+.++.+....+|++.+|+|+.+..+.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 455666666789999999999999999988887654
No 44
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=45.38 E-value=1.3e+02 Score=22.45 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=25.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhc
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLAN 248 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 248 (269)
.+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 3344555558999999999999999888876443
No 45
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=43.05 E-value=2.1e+02 Score=24.24 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 044720 193 HQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTL 246 (269)
Q Consensus 193 ~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 246 (269)
...+..+...++.. ...=.-.+++++... +++|++..|||+.+..+.|..++
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 34555554433322 333334455655443 78999999999999988888875
No 46
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=41.95 E-value=25 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHhcc
Q 044720 11 LLALCIACFLAGSFFST 27 (269)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (269)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46899999999998763
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=41.59 E-value=51 Score=26.72 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
+..+.+....+|++..|+|..+..+-|...++...
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 44555566889999999999999888888777663
No 48
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.44 E-value=61 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC--CCCCceEEEEc
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH--KSKPRIYIGCM 260 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~--~~~~rlYiG~~ 260 (269)
.+..+.+..+.+|++-.|+|..+..+.+...+... .+...+..|..
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 113 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDV 113 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeee
Confidence 34556666788999999999999988888877332 23445555654
No 49
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=39.57 E-value=52 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.380 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCccEEEEeCCceEEehH---HHHHHHhcCCCCCceEE
Q 044720 213 RLYFSTAISIWDADFYVKVDDDVHVNLG---MLVNTLANHKSKPRIYI 257 (269)
Q Consensus 213 l~~~~wa~~~~~a~F~lKvDDDvfVnl~---~L~~~L~~~~~~~rlYi 257 (269)
..++.|+.+..++++++-+|||+.+.++ -+...|..+...+++++
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ 133 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC 133 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE
Confidence 3466676666689999999999999998 44555555544555544
No 50
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.54 E-value=24 Score=31.65 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHhHHHhccC------CCCCCCC
Q 044720 7 SGKTLLALCIACFLAGSFFSTW------THTFHQD 35 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r------~w~~~~~ 35 (269)
+-...+++|-.||++|++|++- ||+.+..
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 3345789999999999999985 4766543
No 51
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=36.79 E-value=2.5e+02 Score=23.40 Aligned_cols=79 Identities=18% Similarity=0.056 Sum_probs=46.3
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhhCC--CEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQ--DFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLV 243 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~--DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 243 (269)
+.+++|...+. +.....+.+-...|. ++......... ....|.- .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~---d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED---DPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc---chHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777776553 223334444445555 33233221111 1224433 24455566789999999999999888888
Q ss_pred HHHhcC
Q 044720 244 NTLANH 249 (269)
Q Consensus 244 ~~L~~~ 249 (269)
..+...
T Consensus 106 ~l~~~~ 111 (196)
T cd02520 106 RMVAPL 111 (196)
T ss_pred HHHHHh
Confidence 777763
No 52
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=35.09 E-value=45 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=29.5
Q ss_pred cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEc
Q 044720 222 IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCM 260 (269)
Q Consensus 222 ~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~ 260 (269)
....+-++-+|||+.++.+.|.-........|.-.+|+.
T Consensus 73 ~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 73 EIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp T--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred ccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 346788999999999999999888887776676777764
No 53
>PLN03181 glycosyltransferase; Provisional
Probab=35.07 E-value=1.8e+02 Score=29.32 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=52.9
Q ss_pred HHHHHhhccCCchhhhhhhccCcEEEEEEeecCCC----C-CC-chhHHHH---HHhhhCC-CEEEec-cc-cCCCchhH
Q 044720 143 RDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSAT----P-GG-VLDKAID---AEDAEHQ-DFLRLN-HV-EGYHQLST 210 (269)
Q Consensus 143 R~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~----~-~~-~~~~~I~---~E~~~~~-DIL~ld-~~-DsY~nLt~ 210 (269)
=|.-|+.|...... ...+.+-+|+-|.|..+. + ++ -+.+.++ +=+++|| ++...+ .. ..|..-..
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 35556677654211 112333456666665421 1 12 2222222 2266777 555444 22 35666778
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceEE
Q 044720 211 KTRLYFSTAISIWDADFYVKVDDDVHV 237 (269)
Q Consensus 211 Ktl~~~~wa~~~~~a~F~lKvDDDvfV 237 (269)
|....-.-..++++++|+.-+|-|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 887776667779999999999999765
No 54
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=33.01 E-value=28 Score=31.18 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHhHHHhccC------CCCCCCC
Q 044720 7 SGKTLLALCIACFLAGSFFSTW------THTFHQD 35 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r------~w~~~~~ 35 (269)
+-...+++|-.||++|++|++- ||+.+.+
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 3345689999999999999985 4777554
No 55
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=30.95 E-value=1.3e+02 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHhh----cCCccEEEEeCCceEEehHHHHHHHhcCC---CCCceEE
Q 044720 212 TRLYFSTAIS----IWDADFYVKVDDDVHVNLGMLVNTLANHK---SKPRIYI 257 (269)
Q Consensus 212 tl~~~~wa~~----~~~a~F~lKvDDDvfVnl~~L~~~L~~~~---~~~rlYi 257 (269)
.-.=++||.+ ...++.++-+.||.-+-++=+--+...+. ..+.+|+
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~c 227 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWC 227 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEE
Confidence 3334556655 34789999999999998765544433321 2445554
No 56
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=30.72 E-value=1.8e+02 Score=28.26 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=45.9
Q ss_pred hHHHHHHhhhCCCEEEeccc-----cCCCchhHHHHHHHHHHhhc-CCccEEEEeCCceEEehHHHHHHHh
Q 044720 183 DKAIDAEDAEHQDFLRLNHV-----EGYHQLSTKTRLYFSTAISI-WDADFYVKVDDDVHVNLGMLVNTLA 247 (269)
Q Consensus 183 ~~~I~~E~~~~~DIL~ld~~-----DsY~nLt~Ktl~~~~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~ 247 (269)
.+-|.+=.++|-+++.+-+. ..-....-+...++.|+... +..+|++|+|.|-......|....-
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY 198 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFY 198 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhe
Confidence 44466667889998877421 11112234566788888875 6889999999999999999877544
No 57
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.62 E-value=1e+02 Score=25.75 Aligned_cols=35 Identities=6% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCC
Q 044720 217 STAISIWDADFYVKVDDDVHVNLGMLVNTLANHKS 251 (269)
Q Consensus 217 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 251 (269)
..+......+|++.+|+|.++..+.+...+.....
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~ 99 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRA 99 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhc
Confidence 44445556899999999999998888877665543
No 58
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=30.37 E-value=4.9e+02 Score=27.60 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=68.4
Q ss_pred CCCceEEEEEeCCCCCHH-HHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchh----HHHHHHhhhCC---C
Q 044720 124 LQRAFVVVGINTAFSSKK-RRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLD----KAIDAEDAEHQ---D 195 (269)
Q Consensus 124 ~~~~~lvI~I~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~----~~I~~E~~~~~---D 195 (269)
.....+.|.|-+.-...+ -+..++.++.+-.. ......+.+ |++..+.. +..- ..+.+=.++|+ .
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d--~~~~~~e~~~~~~L~~~~~~~~~ 193 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRD--PDIAAAEEAAWLELRAELGGEGR 193 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCC--hhHHHHHHHHHHHHHHhcCCCCc
Confidence 444566666766665543 33567776653210 001223454 88876542 2211 11222234443 3
Q ss_pred EEEeccccCCCchhHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEccccC
Q 044720 196 FLRLNHVEGYHQLSTKTRLYFSTAIS-IWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMKSGP 264 (269)
Q Consensus 196 IL~ld~~DsY~nLt~Ktl~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~sgP 264 (269)
|....- -.|.-.|.-..-.+... -.+++|++-.|-|+.+..+.|...+......++ +|.+...|
T Consensus 194 i~yr~R---~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~ 258 (691)
T PRK05454 194 IFYRRR---RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLP 258 (691)
T ss_pred EEEEEC---CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCc
Confidence 333222 23333566544444432 247899999999999999999998876433333 45554333
No 59
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=30.07 E-value=3.7e+02 Score=23.32 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCC--EEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQD--FLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGML 242 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~D--IL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 242 (269)
.+.+++|-..|. +.....+.+-.++|++ +.......+.. .. .++..+....+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~---D~t~~i~~~~~~~~~~~~v~~~~~~~n~G-~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP---DGTQDVVKQLQKVYGEDRILLRPRPGKLG-LG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC---CCHHHHHHHHHHhcCCCcEEEEecCCCCC-HH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 466777765442 2233334443445653 33333322221 11 23444444557899999999999999888
Q ss_pred HHHHhcCC-CCCceEEEEc
Q 044720 243 VNTLANHK-SKPRIYIGCM 260 (269)
Q Consensus 243 ~~~L~~~~-~~~rlYiG~~ 260 (269)
..++.... ....+.+|..
T Consensus 112 ~~l~~~~~~~~~~~v~g~r 130 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTR 130 (243)
T ss_pred HHHHHHHHhcCCcEEEEcc
Confidence 87776542 3445666653
No 60
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=29.30 E-value=35 Score=26.03 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhHHHhccCC
Q 044720 9 KTLLALCIACFLAGSFFSTWT 29 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~ 29 (269)
-|++++-++|..||.+++++|
T Consensus 47 ~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 47 WWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999886
No 61
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=28.87 E-value=48 Score=23.01 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHHHhc
Q 044720 11 LLALCIACFLAGSFFS 26 (269)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (269)
+++||+++|++|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6889999999998764
No 62
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=26.27 E-value=2.1e+02 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=24.1
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 223 WDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 223 ~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
.+.+|++-.|-|+.+..+.|...+...
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~ 120 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRM 120 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578999999999999999999888765
No 63
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.80 E-value=5.5e+02 Score=23.58 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhc
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLAN 248 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 248 (269)
...+.+....+|++..|+|.++.++.|...+..
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~ 109 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAH 109 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHH
Confidence 344555678999999999999998887776664
No 64
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=62 Score=30.75 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCccchhhhhhhhHHHHHHHHHHHHHHHH
Q 044720 71 GGKSVDVMGEVKRTHQAIQSLDKTISALE 99 (269)
Q Consensus 71 ~~~~~~~~~~~~~t~~~~~~~~k~~~~le 99 (269)
.+..++.+.|+...|.+|+.|+|+|.+|.
T Consensus 191 ~~~~~~~l~Eiq~Rh~~ik~LEksi~ELh 219 (297)
T KOG0810|consen 191 RGQAKQTLAEIQERHDEIKKLEKSIRELH 219 (297)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999875
No 65
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.33 E-value=1e+02 Score=18.35 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 044720 88 IQSLDKTISALEMELAVAR 106 (269)
Q Consensus 88 ~~~~~k~~~~le~ela~~~ 106 (269)
+..+..+|+.||-+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467778888998887654
No 66
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.26 E-value=98 Score=22.62 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=19.7
Q ss_pred CCCcccc--hhHHHHHHHHHHHhHHHhc-cCCCCCCC
Q 044720 1 MKAKAAS--GKTLLALCIACFLAGSFFS-TWTHTFHQ 34 (269)
Q Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~w~~~~ 34 (269)
||.|..+ .+|+|++++..|+.=++++ ---|.-.+
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfgRl~Y~~I~a~~hHq 37 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFGRLIYSAIGAWVHHQ 37 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555543 3788888887777634443 23354433
No 67
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.41 E-value=3.1e+02 Score=20.21 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCEEEeccccCCCchhHHHHHHHHHHhh-cCCccEEEEeCCceEEehHH
Q 044720 193 HQDFLRLNHVEGYHQLSTKTRLYFSTAIS-IWDADFYVKVDDDVHVNLGM 241 (269)
Q Consensus 193 ~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~-~~~a~F~lKvDDDvfVnl~~ 241 (269)
+.++-...+...|..-... ...+....+ ...++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4555566666666543333 223333333 46899999999998887764
No 68
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=23.06 E-value=88 Score=19.71 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHhHHHhccC
Q 044720 7 SGKTLLALCIACFLAGSFFSTW 28 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r 28 (269)
+--|+.++.+|+|-+.+.+=||
T Consensus 5 ~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 5 SLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHhccceeEEEec
Confidence 4569999999999999998887
No 69
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=22.34 E-value=4.8e+02 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHhhcC--CccEEEEeCCceEEehHHHHHHHhcCC
Q 044720 215 YFSTAISIW--DADFYVKVDDDVHVNLGMLVNTLANHK 250 (269)
Q Consensus 215 ~~~wa~~~~--~a~F~lKvDDDvfVnl~~L~~~L~~~~ 250 (269)
++.++.+.. +++|++..|+|+.+..+.|...+....
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 456665543 479999999999999999998887653
No 70
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.95 E-value=6.7e+02 Score=23.54 Aligned_cols=113 Identities=15% Similarity=0.024 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCCH-HHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCC
Q 044720 127 AFVVVGINTAFSSK-KRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGY 205 (269)
Q Consensus 127 ~~lvI~I~Sap~~~-~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY 205 (269)
+.+-|.|.+--... --.+.++..=.... ..+.++.|...+ .+..-+.+.+-..++++.+...+.+
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dy---------p~~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~~~~~-- 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDY---------PRYEVIVVDDGS---TDETYEILEELGAEYGPNFRVIYPE-- 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCC---------CCceEEEECCCC---ChhHHHHHHHHHhhcCcceEEEecc--
Confidence 45556666665555 33444444333221 225566666533 3445555666667776444444220
Q ss_pred CchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCCc
Q 044720 206 HQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKPR 254 (269)
Q Consensus 206 ~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~r 254 (269)
.+-..| ...+.++....+.++++..|-|..+..+.|...+......+.
T Consensus 120 ~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 120 KKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred ccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 111222 345667777677999999999999999999999998754443
No 71
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=20.42 E-value=5e+02 Score=26.10 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=45.9
Q ss_pred cEEEEEEeecCCCC------CCchhHHHH---HHhhhCCCEEEecc---ccCCCchhHHHHHHHHHHhhcCCccEEEEeC
Q 044720 165 GIVIRFVIGHSATP------GGVLDKAID---AEDAEHQDFLRLNH---VEGYHQLSTKTRLYFSTAISIWDADFYVKVD 232 (269)
Q Consensus 165 ~i~v~FvvG~s~~~------~~~~~~~I~---~E~~~~~DIL~ld~---~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvD 232 (269)
.-+|+-|.|....+ +.-+.+.+. +=++.||=-+..+. .+.......|.-+.-+...++++++|+.=+|
T Consensus 126 ~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaKlpaLR~aM~~~PeaEWiWWLD 205 (429)
T PLN03182 126 KPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAKLPLLRKLMLAHPEVEWIWWMD 205 (429)
T ss_pred CCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhHHHHHHHHHHHCCCceEEEEec
Confidence 34777788766432 112233222 22566773334452 3344566778888777778899999999999
Q ss_pred CceEE
Q 044720 233 DDVHV 237 (269)
Q Consensus 233 DDvfV 237 (269)
.|.++
T Consensus 206 sDALI 210 (429)
T PLN03182 206 SDALF 210 (429)
T ss_pred CCcee
Confidence 99765
No 72
>PHA03289 envelope glycoprotein I; Provisional
Probab=20.40 E-value=2.2e+02 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCCCCCCCCCcccCCccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 044720 58 DCDHHDNKPLKSVGGKSVDVMGEVKRTHQAIQSLDKTISALEME 101 (269)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~k~~~~le~e 101 (269)
+|++.. +..+.||. |. +-...|+|++..||.|
T Consensus 321 ~~~~~~-------~~~ps~i~-~~----e~~e~~~k~~~~~~~~ 352 (352)
T PHA03289 321 GCNPET-------KNVPSDIS-EA----ELLERLEKKIEMLETE 352 (352)
T ss_pred cCCccc-------ccCccccc-HH----HHHHHHHHHhhhhhcC
Confidence 788752 24667766 43 4566799999999865
No 73
>PF04846 Herpes_pp38: Herpesvirus pp38 phosphoprotein; InterPro: IPR006930 Members of this family contain a conserved region found in most herpesvirus pp38 phosphoproteins.
Probab=20.08 E-value=76 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHhHHHhc
Q 044720 7 SGKTLLALCIACFLAGSFFS 26 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (269)
|.|..++=.-.||+||+|+-
T Consensus 16 S~k~lv~Gscm~f~aG~LiG 35 (63)
T PF04846_consen 16 SAKSLVLGSCMSFFAGTLIG 35 (63)
T ss_pred ecchhhHHHHHHHHHHHhcc
Confidence 77777777778999999873
No 74
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=20.06 E-value=2.4e+02 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=42.9
Q ss_pred CCCEEEeccccCCCchhHHHHHHHHHHhhcC-Cc------cEEEEeCCceEEehHHHHHHHhcC
Q 044720 193 HQDFLRLNHVEGYHQLSTKTRLYFSTAISIW-DA------DFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 193 ~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~-~a------~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
+||++.+.-.++ +.||....+-+.+|. +. .-++.+|=|...|.-+|...|+..
T Consensus 37 aG~~vEi~Gp~~----sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hr 96 (293)
T KOG2859|consen 37 AGTLVEISGPGN----SGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHR 96 (293)
T ss_pred cCcEEEEeCCCC----ccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHH
Confidence 899988765544 789999999888874 22 348999999999999999998853
Done!