Query 044720
Match_columns 269
No_of_seqs 276 out of 1135
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.6 4.9E-15 1.7E-19 135.3 10.2 120 126-265 12-135 (280)
2 3bcv_A Putative glycosyltransf 83.4 14 0.00047 30.2 11.2 76 165-249 34-109 (240)
3 1xhb_A Polypeptide N-acetylgal 75.0 36 0.0012 31.5 12.3 78 166-250 62-140 (472)
4 2d7i_A Polypeptide N-acetylgal 72.7 30 0.001 33.4 11.5 85 167-258 146-230 (570)
5 1qg8_A Protein (spore coat pol 65.7 55 0.0019 26.8 12.6 89 165-259 30-125 (255)
6 2ffu_A Ppgalnact-2, polypeptid 62.9 50 0.0017 30.9 10.6 74 166-250 99-172 (501)
7 4fix_A UDP-galactofuranosyl tr 60.4 75 0.0026 31.5 11.8 37 213-249 257-293 (657)
8 2z86_A Chondroitin synthase; G 53.7 1.5E+02 0.0053 28.1 13.8 76 165-249 404-479 (625)
9 2pnv_A Small conductance calci 44.4 22 0.00077 23.3 3.3 31 73-106 6-36 (43)
10 4dzn_A Coiled-coil peptide CC- 38.7 37 0.0013 20.5 3.4 25 83-107 6-30 (33)
11 2z86_A Chondroitin synthase; G 32.6 3.3E+02 0.011 25.8 11.9 34 216-249 166-199 (625)
12 2z5i_A TM, general control pro 31.2 33 0.0011 23.2 2.6 22 86-107 12-33 (52)
13 1omz_A Alpha-1,4-N-acetylhexos 28.3 52 0.0018 29.8 4.2 38 223-260 105-142 (293)
14 4hg6_A Cellulose synthase subu 27.3 4.8E+02 0.017 26.1 12.5 39 210-249 225-263 (802)
15 3ra3_B P2F; coiled coil domain 25.6 45 0.0015 19.5 2.1 16 90-105 11-26 (28)
16 2akf_A Coronin-1A; coiled coil 25.1 99 0.0034 18.7 3.6 25 80-104 7-31 (32)
17 2lnd_A De novo designed protei 24.8 88 0.003 23.5 4.2 71 133-221 31-104 (112)
18 1vf5_H Protein PET N; photosyn 23.4 52 0.0018 19.8 2.1 23 6-28 4-26 (29)
19 1fo8_A Alpha-1,3-mannosyl-glyc 22.5 48 0.0017 30.4 2.9 29 214-242 89-117 (343)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.58 E-value=4.9e-15 Score=135.26 Aligned_cols=120 Identities=18% Similarity=0.319 Sum_probs=84.9
Q ss_pred CceEEEEEeCCCC-CHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccc--
Q 044720 126 RAFVVVGINTAFS-SKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHV-- 202 (269)
Q Consensus 126 ~~~lvI~I~Sap~-~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~-- 202 (269)
.-.|+|+|+|++. +.+|+.+||+||++... .. .||.+... + ..+... ..++++..++.
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--------~~---~fifsd~~--d----~~l~~~--~~~~~~~~~~~~~ 72 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--------QQ---TFIFTDSP--D----ERLQER--LGPHLVVTQCSAE 72 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSG--------GG---EEEEESSC--C----HHHHHH--HGGGEEECCC---
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCC--------Cc---eEEEcCCC--c----cccccc--ccccceecccccc
Confidence 3567889999998 55688999999998642 11 23333221 1 223222 24678887764
Q ss_pred cCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEcc-ccCc
Q 044720 203 EGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCMK-SGPV 265 (269)
Q Consensus 203 DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~~-sgPV 265 (269)
+++.+++.|+...+.+.. +.+++||+|+|||+|||+++|+.+|..+++..++|+|+.. .+|+
T Consensus 73 ~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~ 135 (280)
T 2j0a_A 73 HSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPI 135 (280)
T ss_dssp ----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC----
T ss_pred ccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccc
Confidence 467889999999988754 3599999999999999999999999999999999999876 4454
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=83.38 E-value=14 Score=30.22 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.++.|-..+. +.....+.+-.+++..+..+. .+ |.- .-.....+.+....+|++.+|+|.++..+.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 456666654332 233444555455677776664 23 221 123344555566889999999999999888777
Q ss_pred HHhcC
Q 044720 245 TLANH 249 (269)
Q Consensus 245 ~L~~~ 249 (269)
.+...
T Consensus 105 l~~~~ 109 (240)
T 3bcv_A 105 MYNVA 109 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=75.02 E-value=36 Score=31.47 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=47.1
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhhCC-CEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQ-DFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~-DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
..++.|-..+. ++.....+++-.+.+. .+-.+...++.. + -.+...+.+....+|++..|+|+.+..+-|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~G-~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRSG-L----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCCC-H----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCCC-h----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 35555554332 2234445555556676 566665544332 2 22334445556789999999999999887777
Q ss_pred HHhcCC
Q 044720 245 TLANHK 250 (269)
Q Consensus 245 ~L~~~~ 250 (269)
.+....
T Consensus 135 ll~~~~ 140 (472)
T 1xhb_A 135 LLARIK 140 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=72.69 E-value=30 Score=33.43 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=48.8
Q ss_pred EEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 044720 167 VIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTL 246 (269)
Q Consensus 167 ~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 246 (269)
.|+.|-..|. ++.+...+++-.+.+..|-.+...+.. .+.. +...+.+....+|++..|+|+.+..+-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 4555554332 333355566656677666666554432 2222 23344444578999999999999987766666
Q ss_pred hcCCCCCceEEE
Q 044720 247 ANHKSKPRIYIG 258 (269)
Q Consensus 247 ~~~~~~~rlYiG 258 (269)
......+...+|
T Consensus 219 ~~l~~~~~~vv~ 230 (570)
T 2d7i_A 219 DRIARNRKTIVC 230 (570)
T ss_dssp HHHHHCTTEEEE
T ss_pred HHHHhCCCEEEe
Confidence 654333333333
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=65.74 E-value=55 Score=26.82 Aligned_cols=89 Identities=7% Similarity=-0.013 Sum_probs=49.6
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCC-----CchhHHHHHHHHHHhhcCCccEEEEeCCceEEeh
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGY-----HQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNL 239 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY-----~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl 239 (269)
.+.++.|-..+. +. ...+.++...+..|..+.....- .|. . .-..+..+.+..+.+|++..|||.++..
T Consensus 30 ~~eiivvDd~S~---d~-t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~-G-~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EE-TLNVIRPFLNDNRVRFYQSDISGVKERTEKT-R-YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HH-HHHHHGGGGGSTTEEEEECCCCSHHHHHSSC-H-HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---ch-HHHHHHHHhhcCCEEEEeccccccccccccc-C-HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 456666654332 11 22344444334556555433110 222 1 2334556666678999999999999998
Q ss_pred HHHHHHHhcCC--CCCceEEEE
Q 044720 240 GMLVNTLANHK--SKPRIYIGC 259 (269)
Q Consensus 240 ~~L~~~L~~~~--~~~rlYiG~ 259 (269)
+.|...+.... +...+..|.
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEec
Confidence 87777666542 344444444
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=62.93 E-value=50 Score=30.88 Aligned_cols=74 Identities=15% Similarity=-0.081 Sum_probs=44.4
Q ss_pred EEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 044720 166 IVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNT 245 (269)
Q Consensus 166 i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 245 (269)
+.+++|-..|. ++. +....+.+..+-.+...+... + -.++..+.+....+|++..|+|+.+..+-|..+
T Consensus 99 ~EIIvVDDgS~--D~t----~~~~~~~~~~v~vi~~~~n~G-~----~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPE----DGALLGKIEKVRVLRNDRREG-L----MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTH----HHHGGGGBTTEEEEECSSCCH-H----HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chH----HHHHHhcCCCEEEEECCCCcC-H----HHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 45666654332 222 233345566666665543322 1 233445555567899999999999998877777
Q ss_pred HhcCC
Q 044720 246 LANHK 250 (269)
Q Consensus 246 L~~~~ 250 (269)
+....
T Consensus 168 l~~~~ 172 (501)
T 2ffu_A 168 LERVA 172 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=60.43 E-value=75 Score=31.53 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 213 RLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 213 l~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
-.+++.|....+++|++..|||+.+..+.|...+...
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l 293 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMH 293 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHH
Confidence 3466676655589999999999999998887776654
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=53.70 E-value=1.5e+02 Score=28.15 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=45.3
Q ss_pred cEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 044720 165 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVN 244 (269)
Q Consensus 165 ~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 244 (269)
.+.++.|-..+. +.....+.+-.+.+..+..+. .++. . .-.++..+.+....+|++..|+|.++..+.|..
T Consensus 404 ~~eiivvdd~S~---d~t~~~~~~~~~~~~~i~~~~-~~n~-G----~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST---DDTLRILQEHYANHPRVRFIS-QKNK-G----IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS---SSHHHHHHHHHTTCTTEEEEE-ECCC-C----HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC---hhHHHHHHHHHhhCCcEEEEe-CCCC-C----HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 356666655442 233334444445566666554 2221 1 123445555566889999999999999888877
Q ss_pred HHhcC
Q 044720 245 TLANH 249 (269)
Q Consensus 245 ~L~~~ 249 (269)
.+...
T Consensus 475 ~~~~~ 479 (625)
T 2z86_A 475 CLDEF 479 (625)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=44.42 E-value=22 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.5
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 044720 73 KSVDVMGEVKRTHQAIQSLDKTISALEMELAVAR 106 (269)
Q Consensus 73 ~~~~~~~~~~~t~~~~~~~~k~~~~le~ela~~~ 106 (269)
...|++.++...|+ +|+++|..||..|.+-.
T Consensus 6 ~mydlvsel~~r~e---~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 6 IMYDMISDLNERSE---DFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Confidence 34677777755555 68999999999887644
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=38.69 E-value=37 Score=20.50 Aligned_cols=25 Identities=36% Similarity=0.516 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q 044720 83 RTHQAIQSLDKTISALEMELAVART 107 (269)
Q Consensus 83 ~t~~~~~~~~k~~~~le~ela~~~~ 107 (269)
--.+-|-.|.|.|..|..|+|+-++
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345677899999999999998765
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=32.61 E-value=3.3e+02 Score=25.81 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=26.7
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 216 FSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 216 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
+..+.+....+|++..|+|+.+..+.|...+...
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~ 199 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELL 199 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4455555689999999999999988877776654
No 12
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.20 E-value=33 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 044720 86 QAIQSLDKTISALEMELAVART 107 (269)
Q Consensus 86 ~~~~~~~k~~~~le~ela~~~~ 107 (269)
.-++.|+|+|..||.+|.+.+-
T Consensus 12 RsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3567899999999999987753
No 13
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=28.28 E-value=52 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhcCCCCCceEEEEc
Q 044720 223 WDADFYVKVDDDVHVNLGMLVNTLANHKSKPRIYIGCM 260 (269)
Q Consensus 223 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlYiG~~ 260 (269)
...+-|+-+|||+.++.+.|.--....+..|.-.+|+.
T Consensus 105 i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 105 VETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 47889999999999999999877777666666677764
No 14
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=27.31 E-value=4.8e+02 Score=26.11 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcC
Q 044720 210 TKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNTLANH 249 (269)
Q Consensus 210 ~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 249 (269)
.|.- .+..+.+..+.+|++.+|+|+.+..+.|...+...
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~ 263 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYF 263 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHH
Confidence 4443 35666667789999999999999998888777764
No 15
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.63 E-value=45 Score=19.47 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 044720 90 SLDKTISALEMELAVA 105 (269)
Q Consensus 90 ~~~k~~~~le~ela~~ 105 (269)
.|...|..||+|+|+-
T Consensus 11 rlkqeiaaleyeiaal 26 (28)
T 3ra3_B 11 RLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5777899999999874
No 16
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.14 E-value=99 Score=18.70 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 044720 80 EVKRTHQAIQSLDKTISALEMELAV 104 (269)
Q Consensus 80 ~~~~t~~~~~~~~k~~~~le~ela~ 104 (269)
++.+-.-.+|+|+++++-||.-..|
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445789999999999976543
No 17
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.82 E-value=88 Score=23.49 Aligned_cols=71 Identities=28% Similarity=0.288 Sum_probs=45.2
Q ss_pred EeCCCCCHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCC---CEEEeccccCCCchh
Q 044720 133 INTAFSSKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQ---DFLRLNHVEGYHQLS 209 (269)
Q Consensus 133 I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~---DIL~ld~~DsY~nLt 209 (269)
|.|+.++.+-|+.|...=- +..-.++||-|.+.+ --...+.|+++-| |+|-. -..++|+
T Consensus 31 irtatssqdirdiiksmkd-----------ngkplvvfvngasqn----dvnefqneakkegvsydvlks---tdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKD-----------NGKPLVVFVNGASQN----DVNEFQNEAKKEGVSYDVLKS---TDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTT-----------CCSCEEEEECSCCHH----HHHHHHHHHHHHTCEEEEEEC---CCHHHHH
T ss_pred eeeccchhhHHHHHHHHHh-----------cCCeEEEEecCcccc----cHHHHHHHHHhcCcchhhhcc---CCHHHHH
Confidence 5677778888888865322 233468999997643 1234566766655 33322 2345789
Q ss_pred HHHHHHHHHHhh
Q 044720 210 TKTRLYFSTAIS 221 (269)
Q Consensus 210 ~Ktl~~~~wa~~ 221 (269)
..+..+++.|-.
T Consensus 93 qrvreflktags 104 (112)
T 2lnd_A 93 QRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhccc
Confidence 999999988754
No 18
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=23.35 E-value=52 Score=19.83 Aligned_cols=23 Identities=4% Similarity=-0.179 Sum_probs=19.5
Q ss_pred cchhHHHHHHHHHHHhHHHhccC
Q 044720 6 ASGKTLLALCIACFLAGSFFSTW 28 (269)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~r 28 (269)
++--|+.++.+|+|-+.+.+=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 45669999999999999988776
No 19
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=22.45 E-value=48 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHH
Q 044720 214 LYFSTAISIWDADFYVKVDDDVHVNLGML 242 (269)
Q Consensus 214 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 242 (269)
.++.++.+...+++++-+|||+.+.++=+
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~ 117 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFF 117 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHH
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHH
Confidence 45555555557999999999999998655
Done!