Query 044720
Match_columns 269
No_of_seqs 276 out of 1135
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 10:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 58.0 4.7 0.00034 30.0 4.1 37 217-253 74-110 (265)
2 d1xhba2 c.68.1.17 (A:95-422) P 50.0 58 0.0042 26.0 12.5 75 167-248 56-131 (328)
3 d1q90n_ f.23.27.1 (N:) PetN su 44.0 5.8 0.00042 22.6 1.8 20 9-28 9-28 (31)
4 d1qg8a_ c.68.1.1 (A:) Spore co 34.8 36 0.0026 26.0 6.1 33 215-247 79-111 (255)
5 d1owxa_ d.58.7.1 (A:) Lupus LA 16.3 83 0.0061 21.7 4.5 41 160-203 5-45 (113)
6 d1s4na_ c.68.1.16 (A:) Glycoli 14.9 31 0.0023 29.8 1.9 27 224-250 136-165 (339)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 12.1 74 0.0054 17.1 2.2 20 9-28 5-24 (27)
8 d1fo8a_ c.68.1.10 (A:) N-acety 11.9 99 0.0072 26.3 4.4 47 211-257 82-135 (343)
9 d2etda1 a.29.9.1 (A:35-183) Hy 10.5 78 0.0057 23.2 2.8 25 83-107 88-112 (149)
10 d2hy5a1 c.114.1.1 (A:1-130) Su 9.8 1E+02 0.0073 21.9 3.2 40 129-175 3-43 (130)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.02 E-value=4.7 Score=30.02 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhcCCCCC
Q 044720 217 STAISIWDADFYVKVDDDVHVNLGMLVNTLANHKSKP 253 (269)
Q Consensus 217 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~ 253 (269)
..+.+..+.+|++.+|||..+..+.|...++.....+
T Consensus 74 n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~ 110 (265)
T d1omza_ 74 LQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFP 110 (265)
T ss_dssp GSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTST
T ss_pred hhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCC
Confidence 3455556889999999999999998888887765444
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.01 E-value=58 Score=25.97 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=43.7
Q ss_pred EEEEEeecCCCCCCchhHHHHHHhhhCCC-EEEeccccCCCchhHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 044720 167 VIRFVIGHSATPGGVLDKAIDAEDAEHQD-FLRLNHVEGYHQLSTKTRLYFSTAISIWDADFYVKVDDDVHVNLGMLVNT 245 (269)
Q Consensus 167 ~v~FvvG~s~~~~~~~~~~I~~E~~~~~D-IL~ld~~DsY~nLt~Ktl~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 245 (269)
.|+.|-.-| .++.....+++-.+++.+ |.++...++.. . -.+...+.+....+|++.+|+|+.+..+.|...
T Consensus 56 EIIvVDdgS--~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G-~----~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l 128 (328)
T d1xhba2 56 EIVLVDDAS--ERDFLKRPLESYVKKLKVPVHVIRMEQRSG-L----IRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 128 (328)
T ss_dssp EEEEEECSC--CCGGGTHHHHHHHHSSSSCEEEEECSSCCC-H----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHHH
T ss_pred EEEEEECCC--ChhhHHHHHHHHHHhcCCCeEEEEeccccc-c----hHHHHHHHHhhhcceeeecCcccccChhHHHHH
Confidence 455444322 133344444444556655 43344333322 2 224456666678999999999999998877666
Q ss_pred Hhc
Q 044720 246 LAN 248 (269)
Q Consensus 246 L~~ 248 (269)
+..
T Consensus 129 ~~~ 131 (328)
T d1xhba2 129 LAR 131 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 3
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=44.03 E-value=5.8 Score=22.56 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhHHHhccC
Q 044720 9 KTLLALCIACFLAGSFFSTW 28 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r 28 (269)
-|..++++|||-+.+.+-||
T Consensus 9 awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 9 GWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheeeEEEEEEec
Confidence 58899999999999998777
No 4
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=34.82 E-value=36 Score=26.05 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 044720 215 YFSTAISIWDADFYVKVDDDVHVNLGMLVNTLA 247 (269)
Q Consensus 215 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 247 (269)
++..+.+..+.+|++.+|+|.++..+.|...+.
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~ 111 (255)
T d1qg8a_ 79 LINQAIEMAEGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHH
Confidence 345566667899999999999999776665444
No 5
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.25 E-value=83 Score=21.65 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=31.2
Q ss_pred hhccCcEEEEEEeecCCCCCCchhHHHHHHhhhCCCEEEecccc
Q 044720 160 MEKEKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLRLNHVE 203 (269)
Q Consensus 160 Le~~~~i~v~FvvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~D 203 (269)
++...|..++||=+.+ .......|.+--.+||+|..+++..
T Consensus 5 ~~~~~g~~~~fvgnL~---~~~tee~Lk~~F~~fG~V~~v~i~~ 45 (113)
T d1owxa_ 5 LEEKIGCLLKFSGDLD---DQTCREDLHILFSNHGEIKWIDFVR 45 (113)
T ss_dssp CSCCCCCEEEEEESCC---SSCCHHHHHHHTCSSCCEEEEECCT
T ss_pred cCCCCCCeEEEECCCC---CCCCHHHHHHHHHhcCChheEEEec
Confidence 3446788888886665 3456778899999999999999763
No 6
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.86 E-value=31 Score=29.76 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=20.6
Q ss_pred CccEEEEeCCceEEeh---HHHHHHHhcCC
Q 044720 224 DADFYVKVDDDVHVNL---GMLVNTLANHK 250 (269)
Q Consensus 224 ~a~F~lKvDDDvfVnl---~~L~~~L~~~~ 250 (269)
+++||+++|||+++.= -.+..+++.++
T Consensus 136 ~YdYywRvdpD~~f~cdI~yD~F~~M~~n~ 165 (339)
T d1s4na_ 136 EYDWYWRVEPDIKLYCDINYDVFKWMQENE 165 (339)
T ss_dssp TCSEEEECCTTCEECSCCCSCHHHHHHHTT
T ss_pred ccceEEEeCCCcEEecCCCCCHHHHHhhcC
Confidence 8999999999998753 24556777653
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.11 E-value=74 Score=17.05 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhHHHhccC
Q 044720 9 KTLLALCIACFLAGSFFSTW 28 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r 28 (269)
-|+.+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 48889999998888888776
No 8
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.94 E-value=99 Score=26.33 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHhh----cCCccEEEEeCCceEEehHHHH---HHHhcCCCCCceEE
Q 044720 211 KTRLYFSTAIS----IWDADFYVKVDDDVHVNLGMLV---NTLANHKSKPRIYI 257 (269)
Q Consensus 211 Ktl~~~~wa~~----~~~a~F~lKvDDDvfVnl~~L~---~~L~~~~~~~rlYi 257 (269)
+....+.||.+ ...++.++-+.||+.+.++-+- ..|..+...++++.
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~ 135 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEE
Confidence 44444556554 3467999999999999987652 33333333445554
No 9
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=10.53 E-value=78 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q 044720 83 RTHQAIQSLDKTISALEMELAVART 107 (269)
Q Consensus 83 ~t~~~~~~~~k~~~~le~ela~~~~ 107 (269)
++.+..+.|+..++.+|.++++||.
T Consensus 88 ka~~~~~~l~~~l~~~E~~Ia~aR~ 112 (149)
T d2etda1 88 KADANFRQLMDELAGTENRIAVARR 112 (149)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677899999999999999986
No 10
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]}
Probab=9.75 E-value=1e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=25.0
Q ss_pred EEEEEeCCCC-CHHHHHHHHhhccCCchhhhhhhccCcEEEEEEeecC
Q 044720 129 VVVGINTAFS-SKKRRDSVRSSWMPTGEELRRMEKEKGIVIRFVIGHS 175 (269)
Q Consensus 129 lvI~I~Sap~-~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FvvG~s 175 (269)
+.|.|.++|. +..-+.++| ++.. -++.+..|..+|+.|..
T Consensus 3 ~~i~v~~~P~~~~~a~~al~--fA~a-----al~~gh~V~~vFf~~dG 43 (130)
T d2hy5a1 3 FALQINEGPYQHQASDSAYQ--FAKA-----ALEKGHEIFRVFFYHDG 43 (130)
T ss_dssp EEEEECSCTTTSTHHHHHHH--HHHH-----HHHTTCEEEEEEECGGG
T ss_pred EEEEEcCCCCCcHHHHHHHH--HHHH-----HHHCCCeEEEEEEecch
Confidence 5788899985 445667776 3322 13345666568887654
Done!