BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044721
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/150 (66%), Positives = 118/150 (78%), Gaps = 1/150 (0%)
Query: 1 MASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPS-KSQLLDHFKKLGVNL 59
M S+S+IL IG TGYIG+ + +AS+ GHPTF+LVREST S+ S K+QLL+ FK G N+
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 VIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDR 119
V G + +H SLV+A+K VDVVISTVG + QV II AIKE G +KRFFPSEFGNDVD
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 120 VHAVEPAKSAFATKAKIRRAVEAEGIPYTY 149
VHAVEPAKS F KAK+RRA+EAEGIPYTY
Sbjct: 121 VHAVEPAKSVFEVKAKVRRAIEAEGIPYTY 150
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 106/140 (75%)
Query: 124 EPAKSAFATKAKIRRAVEAEGIPYTYGDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKI 183
E S+ + KA++ + +A G +G + +H SLV+A+K VDVVISTVG + QV I
Sbjct: 37 ESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNI 96
Query: 184 IAAIKEAGNVKRFFPSEFGNDVDRVNAVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFF 243
I AIKE G VKRFFPSEFGNDVD V+AVEPAKS F KAK+RRA+EAEGIPYTYV+SN F
Sbjct: 97 IKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCF 156
Query: 244 AGYFLPNLSQPGATAPPRDK 263
AGYFL +L+Q G TAPPRDK
Sbjct: 157 AGYFLRSLAQAGLTAPPRDK 176
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 3 SKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSA--PSKSQLLDHFKKLGVNLV 60
+++KIL +G TG IG+ IV AS+KAG+PT+ LVR++ +A +K +L+D+++ LGV L+
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRV 120
GD+ +HE+LVKAIKQVD+VI G L+ DQVKII AIKEAGN+K+FFPSEFG DVDR
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRH 120
Query: 121 HAVEPAKSAFATKAKIRRAVEAEGIPYTYGDVLNH---GSLVKAIKQVD 166
AVEP + F KA IRR +EAEG+PYTY + H G ++ + Q+D
Sbjct: 121 DAVEPVRQVFEEKASIRRVIEAEGVPYTY--LCCHAFTGYFLRNLAQLD 167
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 96/132 (72%)
Query: 132 TKAKIRRAVEAEGIPYTYGDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAG 191
TK ++ ++ G+ GD+ +H +LVKAIKQVD+VI G L+ DQVKII AIKEAG
Sbjct: 44 TKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAG 103
Query: 192 NVKRFFPSEFGNDVDRVNAVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNL 251
NVK+FFPSEFG DVDR +AVEP + F KA IRR +EAEG+PYTY+ + F GYFL NL
Sbjct: 104 NVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNL 163
Query: 252 SQPGATAPPRDK 263
+Q AT PPRDK
Sbjct: 164 AQLDATDPPRDK 175
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 5/154 (3%)
Query: 1 MASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLV 60
M KS++L +GGTGYIGK IV AS+ GHPT+VL R +S K Q+L +FK+LG L+
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLG----DQVKIIAAIKEAGNIKRFFPSEFGND 116
+ +H+ LV A+KQVDVVIS + +L +Q+K++ AIKEAGNIKRF PSEFG D
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 117 VDRV-HAVEPAKSAFATKAKIRRAVEAEGIPYTY 149
D + HA++P F K K+RRA+EA IPYTY
Sbjct: 121 PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTY 154
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 154 NHGSLVKAIKQVDVVISTVGHTLLA----DQVKIIAAIKEAGNVKRFFPSEFGNDVDRV- 208
+H LV A+KQVDVVIS + +L+ +Q+K++ AIKEAGN+KRF PSEFG D D +
Sbjct: 66 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME 125
Query: 209 NAVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNLSQ-PGATAPPRDK 263
+A++P F+ K K+RRA+EA IPYTYV+SN FAGYF +L+Q G PPRDK
Sbjct: 126 HALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDK 181
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTL-SAPSKSQLLDHFKKLGVNLVIGDV 64
KI+ GGTGYIGKF+V AS+ HPTF+ R T S PS QL + F+ +GV ++ G++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 65 LNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVE 124
HE +V +KQVD+VIS + ++ Q+ II AIK AGNIKRF PS+FG + DR+ +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLP 125
Query: 125 PAKSAFATKAKIRRAVEAEGIPYTY 149
P +S K IRRA+EA +PYTY
Sbjct: 126 PFESVLEKKRIIRRAIEAAALPYTY 150
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 76/124 (61%)
Query: 132 TKAKIRRAVEAEGIPYTYGDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAG 191
+ ++R + G+ G++ H +V +KQVD+VIS + +++ Q+ II AIK AG
Sbjct: 45 SSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAG 104
Query: 192 NVKRFFPSEFGNDVDRVNAVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNL 251
N+KRF PS+FG + DR+ + P +S K IRRA+EA +PYTYV++N F YF+ L
Sbjct: 105 NIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYL 164
Query: 252 SQPG 255
P
Sbjct: 165 LHPS 168
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 4/146 (2%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F+ LG +V G+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAV 123
+ HE LV+ +K+VDVVIS + + DQ KI+ AIK AGNIKRF PS+FG + DR++A+
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 122
Query: 124 EPAKSAFATKAKIRRAVEAEGIPYTY 149
P ++ K IRRA+E IPYTY
Sbjct: 123 PPFEALIERKRMIRRAIEEANIPYTY 148
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 72/105 (68%)
Query: 150 GDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVN 209
G++ H LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR+N
Sbjct: 61 GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 120
Query: 210 AVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNLSQP 254
A+ P ++ K IRRA+E IPYTYV++N FA YF+ L +P
Sbjct: 121 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP 165
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 4/146 (2%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F+ LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAV 123
+ HE LV+ +K+VDVVIS + + DQ KI+ AIK AGNIKRF PS+FG + DR++A+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSAFATKAKIRRAVEAEGIPYTY 149
P ++ K IRRA+E IPYTY
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTY 152
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 72/105 (68%)
Query: 150 GDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVN 209
G++ H LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR+N
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 210 AVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNLSQP 254
A+ P ++ K IRRA+E IPYTYV++N FA YF+ L +P
Sbjct: 125 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP 169
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 4/146 (2%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F+ LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAV 123
+ HE LV+ +K+VDVVIS + + DQ KI+ AIK AGNIKRF PS+FG + DR++A+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSAFATKAKIRRAVEAEGIPYTY 149
P ++ + IRRA+E IPYTY
Sbjct: 127 PPFEALIERQRMIRRAIEEANIPYTY 152
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 72/105 (68%)
Query: 150 GDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVN 209
G++ H LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR+N
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 210 AVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNLSQP 254
A+ P ++ + IRRA+E IPYTYV++N FA YF+ L +P
Sbjct: 125 ALPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP 169
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 99/146 (67%), Gaps = 4/146 (2%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F+ LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAV 123
+ HE LV+ +K+VDVVIS + DQ KI+ AIK AGNIKRF PS+FG + DR++A+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 EPAKSAFATKAKIRRAVEAEGIPYTY 149
P ++ K IRRA+E IPYTY
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTY 152
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 71/105 (67%)
Query: 150 GDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVN 209
G++ H LV+ +K+VDVVIS + DQ KI+ AIK AGN+KRF PS+FG + DR+N
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 210 AVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLPNLSQP 254
A+ P ++ K IRRA+E IPYTYV++N FA YF+ L +P
Sbjct: 125 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP 169
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 3/150 (2%)
Query: 2 ASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVI 61
+ K ++L G TG+IG+F+ AS+ A PT++L R S PSK+++ + G +V
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVY 66
Query: 62 GDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDR 119
G + E++ K +K+ +D+V+STVG + DQ+ ++ A+K G IKRF PSEFG+DV+R
Sbjct: 67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNR 126
Query: 120 VHAVEPAKSAFATKAKIRRAVEAEGIPYTY 149
VEP + + K ++R+ VE GIP+TY
Sbjct: 127 ADPVEPGLNMYREKRRVRQLVEESGIPFTY 156
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 132 TKAKIRRAVEAEGIPYTYGDVLNHGSLVKAIKQ--VDVVISTVGHTLLADQVKIIAAIKE 189
+KAKI +A+E +G YG + ++ K +K+ +D+V+STVG + DQ+ ++ A+K
Sbjct: 49 SKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKA 108
Query: 190 AGNVKRFFPSEFGNDVDRVNAVEPAKSAFVTKAKIRRAVEAEGIPYTYVASNFFAGYFLP 249
G +KRF PSEFG+DV+R + VEP + + K ++R+ VE GIP+TY+ N A +
Sbjct: 109 VGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYY 168
Query: 250 NLSQPGATAPPRD 262
N P PP D
Sbjct: 169 NNIHPSEVLPPTD 181
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 1 MASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLV 60
MA K KI G TG G + +V+AG+ VLVR+S+ PS+ H +V
Sbjct: 1 MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-RLPSEGPRPAH-------VV 51
Query: 61 IGDVLNHESLVKAIKQVDVVISTVG-------HTLLGDQVK-IIAAIKEAG 103
+GDVL + K + D VI +G T++ + + I+AA+K G
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHG 102
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 26/103 (25%)
Query: 150 GDVLNHGSLVKAIKQVDVVISTVGHTLLADQVKIIAAIKEAGNVKRFF-----------P 198
GDVLNH +L +A + D+V + + L Q + A +A +VKR P
Sbjct: 74 GDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYDEVP 133
Query: 199 SEFGNDVDRVNAV--EPAKSAFVTKAKIRR---AVEAEGIPYT 236
+F V+ NAV EP K RR A+EA G+ YT
Sbjct: 134 GKF---VEWNNAVIGEPLKP-------FRRAADAIEASGLEYT 166
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 59 LVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFF--------- 109
++ GDVLNH +L +A + D+V + + L Q + A +A ++KR
Sbjct: 71 IIXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYD 130
Query: 110 --PSEFGNDVDRVHAV--EPAKSAFATKAKIRRAVEAEGIPYT 148
P +F V+ +AV EP K F A A+EA G+ YT
Sbjct: 131 EVPGKF---VEWNNAVIGEPLKP-FRRAAD---AIEASGLEYT 166
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAI---KQVDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAI---KQVDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLG---VNLVIG 62
++L GG+GYIG ++ GH +L SK +L ++LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQ---VDVVISTVGHTLLGDQV---------------KIIAAIKEAGN 104
D+ N E+L+ I +D VI G +G+ V ++I+A++ A N
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AAN 115
Query: 105 IKRF 108
+K F
Sbjct: 116 VKNF 119
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 31/160 (19%)
Query: 7 ILFIGGTGYIGKFIVEASVKA----GHPTFVLVRESTLSAPSK---------SQLLDHFK 53
+L G TG++G+++V ++ G ++ ES A + +LL HFK
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 54 KLGVN---LVIGDV------LNHESLVKAIKQVDVVISTVG-------HTLLGDQVKIIA 97
+L + +V GD L+ + + VD+++ + H L G V A
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELFGPNVAGTA 195
Query: 98 AIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIR 137
+ + P + + D A+EP SAF A IR
Sbjct: 196 ELIRIALTTKLKPFTYVSTADVGAAIEP--SAFTEDADIR 233
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 1 MASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLV 60
M IL GGTG GK V + + ++V + +S++ F +
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVY--SRDELKQSEMAMEFNDPRMRFF 75
Query: 61 IGDVLNHESLVKAIKQVDVVI 81
IGDV + E L A++ VD+ I
Sbjct: 76 IGDVRDLERLNYALEGVDICI 96
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVR 36
KI GGTG++G+++VE+ G+ +L R
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR 34
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 8 LFIGGTGYIGKFIVEASVKAGHPTFVLVR---ESTLSAPSKSQLLDHFKKLGVNLVIGDV 64
L G TG++G +++EA H + +R E + L D+F + V +++ ++
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNI 213
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 18 KFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQV 77
+ +V+AS + H ++ + TLS ++++ ++ GV+LV+G +H+ +V+ ++ +
Sbjct: 79 EHVVQASEQGLH--IIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAI 136
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGDVL 65
K +G TG +G A AGH ++ R S S+ Q L + + + ++L
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLAYLEP---ECRVAEML 66
Query: 66 NHESLVKAIKQVDVVISTVGH 86
+H L +A++ +D VI + G+
Sbjct: 67 DHAGLERALRGLDGVIFSAGY 87
>pdb|3PBI|A Chain A, Structure Of The Peptidoglycan Hydrolase Ripb (Rv1478)
From Mycobacterium Tuberculosis At 1.6 Resolution
Length = 214
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 136 IRRAVEAEGIPYTYGDVLNHGSLVKAIKQVDVVISTVG 173
IRRA G+PY++G GSL K VD +TVG
Sbjct: 89 IRRAGSQMGVPYSWGG----GSLQGPSKGVDSGANTVG 122
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 2 ASKSKILFIGGTGYIGKFIVEA-SVKAGHPTFVLVRESTLSAPSKSQLLD----HFKKLG 56
A K+K + I G+GYIG + EA S + + + E L + D ++ G
Sbjct: 146 APKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHG 205
Query: 57 VNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAI 99
VNLV+G S V A ++VD I T TL G ++K AI
Sbjct: 206 VNLVLG------SKVAAFEEVDDEIIT--KTLDGKEIKSDIAI 240
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 8 LFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGDVLNH 67
L G TG++G +++EA H + +R + KL NL D +
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA--------WYKLXTNL--NDYFSE 122
Query: 68 ESLVKAIKQVDVVI 81
E++ + ++V++
Sbjct: 123 ETVEXXLSNIEVIV 136
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTF----VLVRESTLSAPSKSQLLDHFKKLGVNLVI 61
++L GG G+IG V + +P V+V +S A +++ L + V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVKAIKQVDVVI 81
GD+ + L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 6 KILFIGGTGYIGKFIVEASVKAGHPTF----VLVRESTLSAPSKSQLLDHFKKLGVNLVI 61
++L GG G+IG V + +P V+V +S A +++ L + V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVKAIKQVDVVI 81
GD+ + L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 6 KILFIGGTGYIG----KFIVEASVKAGHPTFVLVRESTLSAPSK-SQLLDHFKKLGVNLV 60
K+L GG G+IG ++I+E HP + ++ L S + L D V
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEK-----HPDWEVINIDKLGYGSNPANLKDLEDDPRYTFV 59
Query: 61 IGDVLNHESLVKAIKQVDVVI 81
GDV ++E + + +++VD V+
Sbjct: 60 KGDVADYELVKELVRKVDGVV 80
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 175 TLLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVNAVEPAKSAFVTKAKIRRAVEAEGIP 234
TL + + + A ++ +K+ P + N + + + +E I +A EA GIP
Sbjct: 308 TLSGNPLAMTAGLE---TLKQLTPDSYKNFIKKGDRLEEG---------ISKAAEAHGIP 355
Query: 235 YTYVASNFFAGYFLPN 250
+T+ + G+F N
Sbjct: 356 HTFNRAGSMIGFFFTN 371
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 3 SKSKILFI-GGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVI 61
S SKI+ + GG GYIG V ++ G+ V S + S ++ L+ K +
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVAR-LEVLTKHHIPFYE 67
Query: 62 GDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKI 95
D+ + + L K K+ +D VI G +G+ +I
Sbjct: 68 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQI 103
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVLVR 36
K ++ GGTG++G +I+++ ++ G+ +R
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR 33
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 14 GYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKK 54
G +GK + +A + P F LV E +AP+ ++ DHF K
Sbjct: 111 GNLGKAVFQAKKRVLEP-FGLVEEGAKTAPTGKRIDDHFPK 150
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 18/178 (10%)
Query: 1 MASKSK-ILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKL-GVN 58
MA + K I +G TG G ++ + GH VR S K + + + + V
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQVHSL--KGLIAEELQAIPNVT 54
Query: 59 LVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKI----IAAIKEAGNIKRFFPSEFG 114
L G +LN+ L+ + + + + GD++ I A K AG I+ + S
Sbjct: 55 LFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114
Query: 115 NDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYT--YGDVLNHG--SLVKAIKQVDVV 168
+ ++ PA +A K + V G+P T Y + N+ SL + Q++++
Sbjct: 115 D--HSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELM 170
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 40 LSAPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLL 89
L++ + +L+ H K G N + GD + LVKA+K V+ S LL
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 101 EAGNIKRFFPSEFGNDV--DRVHAVEPAKSAFATKAKIRRAVE 141
EA I+RF EFG + D V+P S FAT+ + RA+E
Sbjct: 177 EAARIRRFLAEEFGISIREDAGIGVKPI-SRFATRRLMERALE 218
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 4 KSKILFIGGTGYIGKFIVEASVKAGHPTFVL 34
K +IL GG G+IG + A V +G VL
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVL 37
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 87 TLLGDQVKIIAAIKEAGNIKRFFPSEFGND 116
TL GD A I E G ++R P FG D
Sbjct: 185 TLFGDGASATAVIAEHGELERIGPFVFGTD 214
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 1 MASKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLV 60
M+ I+ GG G+IG V V HP + L+ L+ V LV
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFVHY-VYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELV 59
Query: 61 IGDVLNHESLVKAIKQVDVVI 81
+GD+ + E + K + D ++
Sbjct: 60 VGDIADAELVDKLAAKADAIV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,223,570
Number of Sequences: 62578
Number of extensions: 274256
Number of successful extensions: 1016
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 83
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)