BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044724
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 109/643 (16%)
Query: 124 RLNNLKMFDLSGNSFNNXXXXX---XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVL 180
+LN+L++ DLS NS + N++ G +DV NLE L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFL 202
Query: 181 DMKRNEIDNLVVPQGFPHF---KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF 237
D+ N G P +L+HLD+S ++ +F
Sbjct: 203 DVSSNNFS-----TGIPFLGDCSALQHLDISGNKLS---------------------GDF 236
Query: 238 SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF 297
S + + T ++L +S+N F PI P PL L+ N+ EI + S T
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 298 QLKSLSLSSGYGDGP--------------------FRLPIHS---HKSLRLLDVSNNNFQ 334
LS + YG P LP+ + + L++LD+S N F
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
G +P + ++ SL ++S N G I + + KN ++ L L+ N F G+I
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKN----TLQELYLQNNGFTGKI 407
Query: 395 PQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
P +LS C SG IP LG+L+ L+ + + N LEG IP E + L+
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 455 LDISDNNISGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEV 498
L + N+++G +PS C +L LS ++ G L L+ L L++N+ G +
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 499 PVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN----------NNSSLDKPFE-- 546
P +G IP + + + N N + K
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 547 ---ISFDFRNTEKKVEKKSHEIFEFTTK------SNAYTYQGRVLSLLSGIDLSCNKLIG 597
+ F +E+ + T++ S + G ++ L D+S N L G
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL----DMSYNMLSG 643
Query: 598 HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAF 657
+IP IG++ + ILNL HN+++G+IP L LDLS NKL+G+IP+ + L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 658 VVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPIC 700
+ NNLSG IPE+ QF TF + + NP LCG PLP C
Sbjct: 704 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 44/430 (10%)
Query: 298 QLKSLSLSSGYGDGPFRL--PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
L SL LS GP + S L+ L+VS+N V G L SL ++S
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXS 415
N++ G+ + G + S ++ L + N G++ +S+C S
Sbjct: 158 NSISGA---NVVGWVLSDGCG--ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 416 GKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475
IP +LG+ + LQH+ + N L G L++L+IS N G +P
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL------ 263
Query: 476 EQINGLSGLSHLILAHNNLEGEVP-VXXXXXXXXXXXXXXXXXXHGLIPPFF---YNTAL 531
L L +L LA N GE+P +G +PPFF
Sbjct: 264 ----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 532 HESYNNNSSLDKPFEISFDFRNT---EKKVEKKSHEIFEFTTKSNAY---------TYQG 579
+NN S + P + R + + S E+ E T +A + G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 580 RVL--------SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
+L + L + L N G IPP + N + + L+LS N L+GTIPS+ L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691
R+L L N L G+IP++L+ + N+L+G+IP + N S N
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 692 LCGLPLPICR 701
+P I R
Sbjct: 500 TGEIPKWIGR 509
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 109/643 (16%)
Query: 124 RLNNLKMFDLSGNSFNNXXXXX---XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVL 180
+LN+L++ DLS NS + N++ G +DV NLE L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFL 205
Query: 181 DMKRNEIDNLVVPQGFPHF---KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF 237
D+ N G P +L+HLD+S ++ +F
Sbjct: 206 DVSSNNFS-----TGIPFLGDCSALQHLDISGNKLS---------------------GDF 239
Query: 238 SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF 297
S + + T ++L +S+N F PI P PL L+ N+ EI + S T
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 298 QLKSLSLSSGYGDGP--------------------FRLPIHS---HKSLRLLDVSNNNFQ 334
LS + YG P LP+ + + L++LD+S N F
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
G +P + ++ SL ++S N G I + + KN ++ L L+ N F G+I
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKN----TLQELYLQNNGFTGKI 410
Query: 395 PQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
P +LS C SG IP LG+L+ L+ + + N LEG IP E + L+
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 455 LDISDNNISGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEV 498
L + N+++G +PS C +L LS ++ G L L+ L L++N+ G +
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 499 PVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN----------NNSSLDKPFE-- 546
P +G IP + + + N N + K
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 547 ---ISFDFRNTEKKVEKKSHEIFEFTTK------SNAYTYQGRVLSLLSGIDLSCNKLIG 597
+ F +E+ + T++ S + G ++ L D+S N L G
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL----DMSYNMLSG 646
Query: 598 HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAF 657
+IP IG++ + ILNL HN+++G+IP L LDLS NKL+G+IP+ + L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 658 VVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPIC 700
+ NNLSG IPE+ QF TF + + NP LCG PLP C
Sbjct: 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 44/430 (10%)
Query: 298 QLKSLSLSSGYGDGPFRL--PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
L SL LS GP + S L+ L+VS+N V G L SL ++S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXS 415
N++ G+ + G + S ++ L + N G++ +S+C S
Sbjct: 161 NSISGA---NVVGWVLSDGCG--ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 416 GKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475
IP +LG+ + LQH+ + N L G L++L+IS N G +P
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL------ 266
Query: 476 EQINGLSGLSHLILAHNNLEGEVP-VXXXXXXXXXXXXXXXXXXHGLIPPFF---YNTAL 531
L L +L LA N GE+P +G +PPFF
Sbjct: 267 ----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 532 HESYNNNSSLDKPFEISFDFRNT---EKKVEKKSHEIFEFTTKSNAY---------TYQG 579
+NN S + P + R + + S E+ E T +A + G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 580 RVL--------SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
+L + L + L N G IPP + N + + L+LS N L+GTIPS+ L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691
R+L L N L G+IP++L+ + N+L+G+IP + N S N
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 692 LCGLPLPICR 701
+P I R
Sbjct: 503 TGEIPKWIGR 512
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 593 NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLV 652
N L+G IPP I LT++ L ++H N++G IP S+++ LD SYN L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 653 ELNAFVVFSFACNNLSGKIPELTAQFA 679
L V +F N +SG IP+ F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 114/307 (37%), Gaps = 86/307 (28%)
Query: 418 IPQWLGNLTGLQHI-IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476
IP L NL L + I N+L GPIP +L L L I+ N+SG++P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------D 119
Query: 477 QINGLSGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN 536
++ + L L ++N L G +P
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSI---------------------------------- 145
Query: 537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI 596
SSL I+FD + ++Y G L + + +S N+L
Sbjct: 146 --SSLPNLVGITFDGNRISGAIP-------------DSY---GSFSKLFTSMTISRNRLT 187
Query: 597 GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN---GKI------ 647
G IPP NL + ++LS N L G F + + + L+ N L GK+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 648 --------------PRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
P+ L +L + + NNL G+IP+ F+ S+Y N LC
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305
Query: 694 GLPLPIC 700
G PLP C
Sbjct: 306 GSPLPAC 312
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
I S +L + N G IP G + IS N L G IP +F N N
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA------NLN 198
Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXSGKIPQWLG------NLTGLQH 430
L V L N G+ S F + LG NL GL
Sbjct: 199 LAFVD---LSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD- 250
Query: 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP 467
+ N + G +P QL +L L++S NN+ G +P
Sbjct: 251 --LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 139/349 (39%), Gaps = 77/349 (22%)
Query: 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLK 230
F + L LD+ +N+I +L + F SL+ +D S I L + + L+
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL------VCEHELEPLQ 172
Query: 231 HLSLSNFS-PSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES 289
+LS FS +N ++ V W ++P F + L+I N +IT +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGK------CMNP---FRNMVLEILDVSGNGWTVDITGN 223
Query: 290 HSLTAPTFQLKSLSLS-----SGYGDGPFRLPIH------SHKSLRLLDVSNNNFQGCIP 338
S Q SL L+ +G+G + P + S+R LD+S + F +
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLN 282
Query: 339 VEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL 398
+ + L L N++ N ++ +F G L N++ L L N +GE+ S
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYG--------LDNLQVLNLSYN-LLGELYSS- 332
Query: 399 SKCFXXXXXXXXXXXXSGKIPQWLGNLTGL---QHIIMPKNHLEGPIPVEFCQLDWLQIL 455
N GL +I + KNH+ F L+ LQ L
Sbjct: 333 -------------------------NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 456 DISDNNISG-----SLPSCF----HLLSIEQINGLSGLSHLILAHNNLE 495
D+ DN ++ S+P F L+++ +IN + L H L+ N LE
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH--LSENRLE 414
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
L+ +Q+L L+HN L P FS L A R L L+ N+L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFV 658
+P + N + +++LS+N ++ +FS + L LSYN+L PR L +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 659 VFSFACNNLSGKIPELT-AQFATFNESSYKGNPFLC 693
+ S N++S +PE + + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 563 HEIFEFTTKSNAYTYQGRVLS---LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL 619
++ E N +T + LS L+ IDLS N++ N+T++ L LS+N L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 620 TGTIPSTFSKLEAYRNLDLSYNKLN 644
P TF L++ R L L N ++
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN 479
Q N+T L +I+ N L P F L L++L + N+IS F N
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--------N 123
Query: 480 GLSGLSHLILAHNNL 494
LS LSHL + N L
Sbjct: 124 DLSALSHLAIGANPL 138
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 603 IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662
+ L R++IL LS +L+ F+ L+ ++DLS+N+L L L + +
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IYLNL 530
Query: 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
A N++S +P L + + + NP C
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
LT + LNL+HN L F KL LDLSYN+L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
L R+Q+LN+SHNNL S +++L + LD S+N++
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 602 PIGNLTRIQILNLSHNNL-TGTIPSTFSKLEAYRNLDLSYN 641
PIG L ++ LN++HN + + +P+ FS L ++DLSYN
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
L R+Q+LN+SHNNL S +++L + LD S+N++
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 602 PIGNLTRIQILNLSHNNL-TGTIPSTFSKLEAYRNLDLSYN 641
PIG L ++ LN++HN + + +P+ FS L ++DLSYN
Sbjct: 118 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 588 IDLSCNKLIGH----------IPPPIGNLTRIQILNLSHNNL-TGTIPSTFSKLEAYRNL 636
I+++CN+ I P+G +IQI+ + +NNL T + ++ K + L
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGE--KIQIIYIGYNNLKTFPVETSLQKXKKLGXL 335
Query: 637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNE 683
+ YN+L GK+P E+ + A N +I E+ A F F E
Sbjct: 336 ECLYNQLEGKLPAFGSEI-KLASLNLAYN----QITEIPANFCGFTE 377
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
L+ +DLS +L P +L+ +Q+LN+SHNN + L + + LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 645 GKIPRQLVELNAFVVF------SFAC 664
++L + + F FAC
Sbjct: 556 TSKKQELQHFPSSLAFLNLTQNDFAC 581
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
L+ +DLS +L P +L+ +Q+LN+SHNN + L + + LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 645 GKIPRQLVELNAFVVF------SFAC 664
++L + + F FAC
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFAC 557
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKL 643
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
L+ +DLS +L P +L+ +Q+LN++ N L F +L + + + L N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 645 GKIPR 649
PR
Sbjct: 532 CSCPR 536
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 121 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 86 YLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNXXXXX 145
+L +Y F F +L+ L LS I +E+ S L++L L+GN +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQS-----LSHLSTLILTGNPIQSLALGA 97
Query: 146 XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
L S++ L+ L++ N I + +P+ F + +LEHL
Sbjct: 98 FSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 206 DMSYAHI 212
D+S I
Sbjct: 157 DLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 120 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 120 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 86 YLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNXXXXX 145
+L +Y F F +L+ L LS I +E+ S L++L L+GN +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQS-----LSHLSTLILTGNPIQSLALGA 96
Query: 146 XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
L S++ L+ L++ N I + +P+ F + +LEHL
Sbjct: 97 FSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 206 DMSYAHI 212
D+S I
Sbjct: 156 DLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 602 PIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNG 645
PIG+L ++ LN++HN + +P FS L +LDLS NK+
Sbjct: 121 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666
T I +LNL+HN L + F++ +LD+ +N ++ P +L V + N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 667 LSGKIPELTAQFAT 680
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666
T I +LNL+HN L + F++ +LD+ +N ++ P +L V + N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 667 LSGKIPELTAQFAT 680
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666
T I +LNL+HN L + F++ +LD+ +N ++ P +L V + N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 667 LSGKIPELTAQFAT 680
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 592 CNKL-IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ 650
C+ L + HIP + + I +LNL+HN L P+ F++ LD +N ++ P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 651 LVELNAFVVFSFACNNLSGKIPELTAQFAT 680
L V + N LS +I + T F T
Sbjct: 69 CQILPLLKVLNLQHNELS-QISDQTFVFCT 97
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 604 GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663
G L + L L N LTG P+ F + L L NK+ + + L+ +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 664 CNNLSGKIPELTAQFATFNESSYKGNPFLC 693
N +S +P + + NPF C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
L+ +DLS +L P +L+ +Q+LN+SHNN + L + + LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 645 GKIPRQLVELNAFVVF------SFAC 664
++L + + F FAC
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFAC 262
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 603 IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR 649
+ NL+ +Q LNLSHN G F + LDL++ +L+ P+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 568 FTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTF 627
+ K ++ +LSL ++ + + +PP RI++L+L H+N +IP
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDL-HSNKIKSIPKQV 440
Query: 628 SKLEAYRNLDLSYNKLNG 645
KLEA + L+++ N+L
Sbjct: 441 VKLEALQELNVASNQLKS 458
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 164 GSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQ--GFPHFKSLEHLDMSYAHIALNTNFLQI 221
GSID + F++ + LEVLD+ N I L G P+ K L AL+TN L+
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL----------ALDTNQLKS 385
Query: 222 IGESM 226
+ + +
Sbjct: 386 VPDGI 390
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG 645
SG + C + H P G T QIL L N +T P F L + L L N+L G
Sbjct: 20 SGTTVDC-RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 646 KIPRQLVE-LNAFVVFSFACNNLS 668
+P + + L V N L+
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLT 101
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
P G T Q+L L N +T P F +L LDL N+L
Sbjct: 33 PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 582 LSLLSGIDLSCNKLIGHI-PPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
+S L +D+S N L H I +LNLS N LTG++ + LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459
Query: 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696
N++ IP+ + L A + A N L + + + NP+ C P
Sbjct: 460 NRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2QV6|A Chain A, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|B Chain B, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|C Chain C, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|D Chain D, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
Length = 268
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF 660
+QI ++ NN+TGT+ S + Y N+ NK+ + +L++ NA + F
Sbjct: 132 VQIAHIDINNITGTLTDIVSAYDTYLNV----NKVKLALMEELLKYNALLFF 179
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 586 SGIDLSCN-KLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
SG + C+ K + +P G T Q+L L N +T P F +L LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
P G T Q+L L N +T P F +L LDL N+L
Sbjct: 25 PTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481
L L GL+ + M NH P F L L+ L + ++ +S L+ +GL
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--------LIERNAFDGL 265
Query: 482 SGLSHLILAHNNL 494
+ L L LAHNNL
Sbjct: 266 ASLVELNLAHNNL 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,744,887
Number of Sequences: 62578
Number of extensions: 914375
Number of successful extensions: 2481
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2040
Number of HSP's gapped (non-prelim): 318
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)