Query 044724
Match_columns 782
No_of_seqs 847 out of 4996
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.9E-73 1.7E-77 689.3 47.5 579 21-696 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-59 6.3E-64 570.1 39.3 513 96-696 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.3E-40 9.3E-45 339.6 9.1 282 346-697 173-457 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.9E-40 4.1E-45 328.3 -14.7 469 69-668 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.8E-37 6E-42 318.9 6.6 369 128-640 80-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.5E-39 7.5E-44 319.4 -12.2 449 69-644 70-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.1E-36 1.1E-40 326.0 -7.3 439 125-666 44-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.9E-34 4E-39 313.9 -5.4 480 68-665 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.4E-33 5.1E-38 291.4 -2.7 387 125-664 6-395 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.4E-32 7.4E-37 282.8 -2.7 372 175-673 7-380 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3.5E-22 7.6E-27 244.3 26.9 367 66-517 531-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.9E-22 8.4E-27 243.9 26.3 228 316-641 676-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.3E-25 1.6E-29 217.9 -2.5 294 379-697 68-364 (498)
14 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.7E-29 216.2 -4.1 105 97-209 68-173 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.8E-21 3.8E-26 220.7 17.9 243 322-675 223-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.7E-21 5.8E-26 219.2 17.3 267 247-655 203-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.8E-20 1.5E-24 209.4 12.7 180 299-519 180-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.7E-19 3.6E-24 206.2 12.0 162 321-520 220-381 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 4.2E-20 9.2E-25 196.7 -0.9 134 326-463 3-150 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.8E-20 1.7E-24 194.7 -2.1 281 350-691 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.5E-23 154.3 -3.0 163 424-653 31-194 (264)
22 PLN03150 hypothetical protein; 99.6 1.4E-15 3E-20 173.9 11.8 118 584-701 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 2.4E-17 5.2E-22 146.0 -3.2 179 319-520 31-213 (264)
24 PLN03150 hypothetical protein; 99.5 6.6E-14 1.4E-18 160.2 13.9 152 17-186 366-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 7.6E-14 1.6E-18 146.2 -5.0 195 376-641 73-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 2.7E-13 6E-18 142.0 -2.6 195 401-666 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 3.1E-16 135.0 7.3 123 382-517 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 4.9E-16 133.4 7.3 198 406-673 97-295 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 3.3E-11 7.1E-16 112.9 6.5 133 92-235 15-148 (175)
30 KOG1259 Nischarin, modulator o 99.0 5.8E-11 1.2E-15 115.1 0.6 132 376-521 282-414 (490)
31 KOG1259 Nischarin, modulator o 99.0 6.1E-11 1.3E-15 115.0 0.6 87 582-671 328-415 (490)
32 KOG1909 Ran GTPase-activating 99.0 2E-11 4.4E-16 121.3 -3.6 95 319-415 28-133 (382)
33 KOG3207 Beta-tubulin folding c 99.0 8.4E-11 1.8E-15 120.1 -0.1 212 399-671 118-342 (505)
34 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 119.1 0.2 157 124-283 119-284 (505)
35 KOG1909 Ran GTPase-activating 99.0 3.5E-11 7.6E-16 119.7 -3.5 167 345-519 29-226 (382)
36 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.3E-15 128.2 -0.4 85 585-672 234-322 (414)
37 PF08263 LRRNT_2: Leucine rich 98.9 1.1E-09 2.4E-14 77.0 4.5 41 22-63 2-43 (43)
38 PF14580 LRR_9: Leucine-rich r 98.9 5.9E-10 1.3E-14 104.5 3.9 124 377-512 18-146 (175)
39 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.8E-14 83.2 3.5 60 584-643 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 1.7E-09 3.6E-14 83.3 3.1 61 607-667 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 7E-10 1.5E-14 121.8 -1.8 241 376-691 70-317 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-09 1.6E-13 121.3 6.1 108 94-210 543-652 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.6 1.3E-08 2.9E-13 119.2 3.6 129 94-236 521-651 (889)
44 KOG1859 Leucine-rich repeat pr 98.4 2.5E-08 5.4E-13 108.1 -3.9 107 582-694 186-294 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 8.9E-09 1.9E-13 111.5 -7.3 126 379-518 165-291 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.7E-13 98.3 -5.4 176 97-280 186-373 (419)
47 KOG2120 SCF ubiquitin ligase, 98.1 3.2E-08 7E-13 96.4 -7.8 59 175-236 185-243 (419)
48 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 3E-12 81.6 -4.4 58 585-644 79-136 (177)
49 KOG4579 Leucine-rich repeat (L 98.0 3.8E-07 8.3E-12 78.9 -3.3 103 584-690 28-134 (177)
50 KOG2982 Uncharacterized conser 97.9 2.2E-06 4.9E-11 83.9 0.7 84 125-210 70-156 (418)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 55.9 4.0 36 127-163 2-37 (44)
52 PF12799 LRR_4: Leucine Rich r 97.9 9.1E-06 2E-10 57.1 2.6 36 608-644 2-37 (44)
53 KOG3665 ZYG-1-like serine/thre 97.8 4.5E-06 9.7E-11 95.8 -0.1 129 126-260 122-265 (699)
54 COG5238 RNA1 Ran GTPase-activa 97.8 2.8E-06 6E-11 82.2 -2.0 218 171-417 26-257 (388)
55 PRK15386 type III secretion pr 97.8 7.2E-05 1.6E-09 79.1 8.2 76 422-518 48-124 (426)
56 KOG2982 Uncharacterized conser 97.8 4.7E-06 1E-10 81.7 -0.6 108 123-235 42-154 (418)
57 PRK15386 type III secretion pr 97.7 8.8E-05 1.9E-09 78.4 8.1 55 376-436 50-104 (426)
58 COG5238 RNA1 Ran GTPase-activa 97.7 1E-05 2.2E-10 78.4 0.2 71 445-519 87-170 (388)
59 KOG1644 U2-associated snRNP A' 97.6 6.9E-05 1.5E-09 69.8 4.9 107 95-209 41-149 (233)
60 KOG1644 U2-associated snRNP A' 97.6 8.5E-05 1.8E-09 69.2 5.1 108 125-236 41-149 (233)
61 KOG4341 F-box protein containi 97.2 1.1E-05 2.5E-10 82.9 -6.0 158 319-489 292-459 (483)
62 KOG3665 ZYG-1-like serine/thre 97.2 0.00021 4.5E-09 82.3 3.2 135 95-236 121-259 (699)
63 KOG4341 F-box protein containi 97.2 1.6E-05 3.4E-10 81.8 -5.1 178 320-511 267-457 (483)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.6E-08 59.4 7.6 119 376-508 10-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.4E-09 69.2 2.8 63 93-163 40-104 (260)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0014 3.1E-08 58.9 7.3 121 317-452 8-128 (129)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00021 4.6E-09 69.7 1.0 110 124-236 41-152 (260)
68 KOG2123 Uncharacterized conser 96.3 0.00023 5.1E-09 69.4 -4.0 64 92-163 37-101 (388)
69 KOG2123 Uncharacterized conser 95.9 0.00042 9.2E-09 67.7 -4.7 59 95-163 18-76 (388)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 36.0 0.6 12 633-644 2-13 (22)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0057 1.2E-07 35.7 0.7 20 609-629 2-21 (22)
72 KOG4308 LRR-containing protein 92.8 0.00053 1.1E-08 75.6 -13.7 191 323-520 89-304 (478)
73 KOG0473 Leucine-rich repeat pr 92.3 0.0065 1.4E-07 58.1 -5.2 84 582-668 41-124 (326)
74 PF13504 LRR_7: Leucine rich r 92.1 0.098 2.1E-06 28.2 1.4 12 151-162 2-13 (17)
75 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.4E-06 30.9 2.4 21 150-171 2-22 (26)
76 smart00370 LRR Leucine-rich re 91.9 0.16 3.4E-06 30.9 2.4 21 150-171 2-22 (26)
77 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.8E-06 27.8 1.2 11 633-643 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 90.3 0.0098 2.1E-07 56.9 -6.1 89 601-692 36-124 (326)
79 KOG1947 Leucine rich repeat pr 89.7 0.091 2E-06 59.2 -0.3 61 148-209 241-304 (482)
80 TIGR00864 PCC polycystin catio 89.6 0.2 4.4E-06 64.7 2.6 36 662-697 2-37 (2740)
81 smart00369 LRR_TYP Leucine-ric 88.5 0.4 8.7E-06 29.1 2.1 14 631-644 2-15 (26)
82 smart00370 LRR Leucine-rich re 88.5 0.4 8.7E-06 29.1 2.1 14 631-644 2-15 (26)
83 KOG4308 LRR-containing protein 87.9 0.0089 1.9E-07 66.0 -9.6 191 319-517 113-329 (478)
84 PF13516 LRR_6: Leucine Rich r 86.7 0.17 3.7E-06 30.1 -0.3 17 631-647 2-18 (24)
85 KOG1947 Leucine rich repeat pr 84.4 0.51 1.1E-05 53.1 1.8 57 198-256 241-306 (482)
86 KOG3864 Uncharacterized conser 79.6 0.24 5.1E-06 46.9 -2.6 82 127-209 102-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 74.8 2.5 5.4E-05 25.7 1.8 15 630-644 1-15 (26)
88 smart00364 LRR_BAC Leucine-ric 67.7 3.6 7.9E-05 24.9 1.4 13 632-644 3-15 (26)
89 KOG3864 Uncharacterized conser 67.6 0.92 2E-05 43.1 -1.8 81 584-664 102-185 (221)
90 KOG3763 mRNA export factor TAP 62.5 3.6 7.9E-05 45.1 1.2 13 681-694 272-284 (585)
91 smart00368 LRR_RI Leucine rich 61.4 6.5 0.00014 24.3 1.7 14 631-644 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 60.7 23 0.00049 38.4 6.5 111 320-438 164-280 (553)
93 PF08693 SKG6: Transmembrane a 51.1 13 0.00029 25.2 1.9 26 725-752 13-38 (40)
94 PF15102 TMEM154: TMEM154 prot 41.7 15 0.00033 33.0 1.5 20 734-753 69-88 (146)
95 KOG3763 mRNA export factor TAP 30.9 25 0.00054 38.9 1.4 16 376-391 216-231 (585)
96 COG4323 Predicted membrane pro 28.7 81 0.0018 25.3 3.4 28 752-779 55-82 (105)
97 TIGR00864 PCC polycystin catio 27.5 34 0.00075 45.6 2.0 32 589-620 1-32 (2740)
98 PF01102 Glycophorin_A: Glycop 26.0 21 0.00045 31.3 -0.2 15 732-746 72-86 (122)
99 smart00367 LRR_CC Leucine-rich 25.0 48 0.001 19.8 1.3 12 150-161 2-13 (26)
100 PHA03099 epidermal growth fact 24.2 30 0.00065 30.1 0.4 31 730-760 106-136 (139)
101 PF08374 Protocadherin: Protoc 21.2 55 0.0012 31.5 1.5 25 722-746 36-60 (221)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.9e-73 Score=689.28 Aligned_cols=579 Identities=33% Similarity=0.512 Sum_probs=525.5
Q ss_pred cHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCE
Q 044724 21 LDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLES 100 (782)
Q Consensus 21 ~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~ 100 (782)
.++|++||++||+++.+|.+.+++|.. +++||.|.||+|++ .++|+.|+|+++.+. |. .+..|..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~--~~---~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNIS--GK---ISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCcc--cc---CChHHhCCCCCCE
Confidence 578999999999999888888899975 67899999999985 679999999998763 22 1456889999999
Q ss_pred EeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEE
Q 044724 101 LSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180 (782)
Q Consensus 101 L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 180 (782)
|+|++|++++.+|.. .+.++++|++|+|++|++++.+|. +.+++|++|+|++|.+.+.+|. .++++++|++|
T Consensus 98 L~Ls~n~~~~~ip~~-----~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L 169 (968)
T PLN00113 98 INLSNNQLSGPIPDD-----IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVL 169 (968)
T ss_pred EECCCCccCCcCChH-----HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEE
Confidence 999999999887764 255899999999999999988775 5689999999999999988886 89999999999
Q ss_pred EcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC-CCCCCCCCeEEccC
Q 044724 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS-NDSWTLNQVLWLSN 254 (782)
Q Consensus 181 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~-~~~l~~L~~L~Ls~ 254 (782)
++++|.+.+.. |..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++ .+|. ++.+++|++|++++
T Consensus 170 ~L~~n~l~~~~-p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 170 DLGGNVLVGKI-PNSLTNLTSLEFLTLAS--NQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred ECccCcccccC-ChhhhhCcCCCeeeccC--CCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999998875 88999999999999999 7788889999998 99999999987 4566 88999999999999
Q ss_pred ceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCC
Q 044724 255 NHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ 334 (782)
Q Consensus 255 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 334 (782)
|.+++.+|. .+.++++|++|++++|.+.+..+.. .....+|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 246 n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 246 NNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ceeccccCh-hHhCCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 999987775 4899999999999999998764432 345578999999999999999988999999999999999999
Q ss_pred ccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcc
Q 044724 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL 414 (782)
Q Consensus 335 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 414 (782)
+.+|..+.. +++|+.|++++|.+++.+|..+. .+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus 322 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~--------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 322 GKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLG--------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CcCChhHhc-CCCCCEEECcCCCCcCcCChHHh--------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 999988877 89999999999999988887776 789999999999999999999999999999999999999
Q ss_pred cccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcc
Q 044724 415 SGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494 (782)
Q Consensus 415 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l 494 (782)
.+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|++++.+| ..+..+++|++|++++|++
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN--------SRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC--------hhhccCCCCcEEECcCcee
Confidence 99999999999999999999999999999999999999999999999999888 5567889999999999999
Q ss_pred eeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCe
Q 044724 495 EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574 (782)
Q Consensus 495 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (782)
.+.+|..+ ..++|+.|++++|++++.+|..+..
T Consensus 465 ~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~---------------------------------------------- 497 (968)
T PLN00113 465 FGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS---------------------------------------------- 497 (968)
T ss_pred eeecCccc-ccccceEEECcCCccCCccChhhhh----------------------------------------------
Confidence 98888766 4689999999999999988876654
Q ss_pred eeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcC
Q 044724 575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654 (782)
Q Consensus 575 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 654 (782)
+++|+.|+|++|++++.+|..++.+++|++|+|++|.++|.+|..|+++++|++|||++|+++|.+|..+..+
T Consensus 498 -------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 498 -------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred -------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 5579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 655 NAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 655 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
++|+++++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus 571 ~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 571 ESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 9999999999999999999 7899999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-59 Score=570.10 Aligned_cols=513 Identities=30% Similarity=0.440 Sum_probs=464.6
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcC-CCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLT-RLSSVRSLKLSYNRLEGSIDVKEFDSF 174 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l 174 (782)
.+++.|||++|.+++.++.. |..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~------~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA------IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSI 139 (968)
T ss_pred CcEEEEEecCCCccccCChH------HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---ccc
Confidence 47899999999999887653 89999999999999999988887654 999999999999999988875 568
Q ss_pred CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC-CCCCCCCC
Q 044724 175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS-NDSWTLNQ 248 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~-~~~l~~L~ 248 (782)
++|++|+|++|.+++.. |..++++++|++|++++ |.+.+.+|..+.+ +++|++|++++ .+|. ++.+++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~--n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 140 PNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGG--NVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECcCCcccccC-ChHHhcCCCCCEEECcc--CcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 99999999999998775 88999999999999999 7788889999988 99999999987 3565 88999999
Q ss_pred eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 044724 249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDV 328 (782)
Q Consensus 249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 328 (782)
.|++++|.+++.+|. .++++++|++|++++|.+.+..+.. +....+|++|++++|.+.+..|..+..+++|++|++
T Consensus 216 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 216 WIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSS---LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred EEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChh---HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 999999999987775 4899999999999999988765432 345568999999999999888888889999999999
Q ss_pred cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 044724 329 SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLY 408 (782)
Q Consensus 329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 408 (782)
++|.+.+.+|..+.. +++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.+|..++.+++|+.|+
T Consensus 292 s~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 292 SDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALT--------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred cCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHh--------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 999999889988876 89999999999999988887776 789999999999999999999999999999999
Q ss_pred CcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEE
Q 044724 409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLI 488 (782)
Q Consensus 409 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~ 488 (782)
+++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+| ..+..+++|+.|+
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~ 434 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP--------SEFTKLPLVYFLD 434 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC--------hhHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888 5678899999999
Q ss_pred cCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724 489 LAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568 (782)
Q Consensus 489 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (782)
+++|++++.+|..+..+++|+.|++++|++.+.+|..+.
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~----------------------------------------- 473 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG----------------------------------------- 473 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-----------------------------------------
Confidence 999999999998888999999999999999888776442
Q ss_pred EecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCc
Q 044724 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648 (782)
Q Consensus 569 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 648 (782)
.++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|
T Consensus 474 -------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 474 -------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred -------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 2468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 649 RQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 649 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
..+..+++|+.|++++|+++|.+|..+..+..++.+++.+|++.+..|
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999988889999999999999887544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-40 Score=339.64 Aligned_cols=282 Identities=23% Similarity=0.265 Sum_probs=229.7
Q ss_pred CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724 346 PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL 425 (782)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 425 (782)
.++++|+|++|.++......|. ++.+|.+|.|+.|+++...+..|.++++|+.|+|..|+|.-.---.|.++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~--------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFD--------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCceEEeecccccccccccccc--------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 4555555666655555555555 56677778888888877667777778888888888888864435567888
Q ss_pred CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724 426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL 505 (782)
Q Consensus 426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 505 (782)
++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-. .|+.++++|+.|+|++|.|..+.++++..+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--------ccccccchhhhhccchhhhheeecchhhhc
Confidence 888888888888887777888888888888888888874333 577888999999999999988888888888
Q ss_pred CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724 506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL 585 (782)
Q Consensus 506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 585 (782)
++|+.|||++|+++...+..|.. ++.|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~L 343 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQL 343 (873)
T ss_pred ccceeEeccccccccCChhHHHH-----------------------------------------------------HHHh
Confidence 99999999999998666655532 6678
Q ss_pred ceeeccCCccCccCCcccccccccceeecccccccccCCc---cccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS---TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
+.|.|++|.++..-..+|..+++|++|||++|.|++.|.+ .|.+|++|+.|+|.+|+|..+.-.+|..+..|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 8999999999877778899999999999999999987765 4788999999999999999666678999999999999
Q ss_pred ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
.+|.+-..-|..+.++ .++++-+..-.++|+|.+
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 9999999889888888 888888888899999975
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-40 Score=328.34 Aligned_cols=469 Identities=25% Similarity=0.331 Sum_probs=319.1
Q ss_pred EEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCC
Q 044724 69 VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTR 148 (782)
Q Consensus 69 V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 148 (782)
...+.++++.+.... ..+.++..|.+|++++|+++...|. ++.+..++.|+.++|+++ .+|+.++.
T Consensus 47 l~~lils~N~l~~l~------~dl~nL~~l~vl~~~~n~l~~lp~a-------ig~l~~l~~l~vs~n~ls-~lp~~i~s 112 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR------EDLKNLACLTVLNVHDNKLSQLPAA-------IGELEALKSLNVSHNKLS-ELPEQIGS 112 (565)
T ss_pred hhhhhhccCchhhcc------HhhhcccceeEEEeccchhhhCCHH-------HHHHHHHHHhhcccchHh-hccHHHhh
Confidence 445667776653221 2356788889999999998765553 888889999999999988 68888999
Q ss_pred CCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCC
Q 044724 149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS 228 (782)
Q Consensus 149 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~ 228 (782)
+.+|+.|+.++|.+. .+|+ .++.+-.|+.++..+|+++.. |+++.++.+|..|++.+ +.+... |+...+ ++.
T Consensus 113 ~~~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~--n~l~~l-~~~~i~-m~~ 184 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEG--NKLKAL-PENHIA-MKR 184 (565)
T ss_pred hhhhhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccc--cchhhC-CHHHHH-HHH
Confidence 999999999999988 7776 788889999999999999887 78888899999999998 554433 334444 778
Q ss_pred CCeEeCCC----CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEE
Q 044724 229 LKHLSLSN----FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS 303 (782)
Q Consensus 229 L~~L~L~~----~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 303 (782)
|++||... .+|. ++.+.+|+.|+|..|++. .+| .|..|+.|+++++..|.+.-.+.
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa---------------- 245 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA---------------- 245 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH----------------
Confidence 88887765 5666 777788888888888776 455 37777777777777777653211
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEE
Q 044724 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL 383 (782)
Q Consensus 304 l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L 383 (782)
....+++++..||+.+|+++ ++|+++.. +.+|++||+|+|.+++ .|.+++ ++ .|+.|
T Consensus 246 -----------e~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLg--------nl-hL~~L 302 (565)
T KOG0472|consen 246 -----------EHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLG--------NL-HLKFL 302 (565)
T ss_pred -----------HHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccc--------cc-eeeeh
Confidence 11235678888888888888 88888876 7888888888888874 444454 67 78888
Q ss_pred EccCccccccCCccccCC--CCCcEEE-------CcCCcc----ccc-CCc---cccCcCCCCEEeCCCCccccCCChhc
Q 044724 384 LLEENHFVGEIPQSLSKC--FLLKGLY-------LNNNNL----SGK-IPQ---WLGNLTGLQHIIMPKNHLEGPIPVEF 446 (782)
Q Consensus 384 ~L~~n~l~~~~~~~l~~l--~~L~~L~-------Ls~N~l----~~~-~p~---~~~~l~~L~~L~L~~N~l~~~~~~~~ 446 (782)
.+.+|.+..+-.+.+..- .-|++|. ++...= .+. .+. ......+.+.|++++-+++ .+|...
T Consensus 303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEV 381 (565)
T KOG0472|consen 303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEV 381 (565)
T ss_pred hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHH
Confidence 888887764322111110 0012111 111000 000 011 1223445667777777776 344444
Q ss_pred cCCCC---CceEeccCCcceeeCCCCccccchhhhcCCCCC-CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcC
Q 044724 447 CQLDW---LQILDISDNNISGSLPSCFHLLSIEQINGLSGL-SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI 522 (782)
Q Consensus 447 ~~l~~---L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 522 (782)
..... ....+++.|++. .+|. .+..+..+ +.+.+++|.+. .+|..++.+++|..|+|++|.+. .+
T Consensus 382 fea~~~~~Vt~VnfskNqL~-elPk--------~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 382 FEAAKSEIVTSVNFSKNQLC-ELPK--------RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred HHHhhhcceEEEecccchHh-hhhh--------hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hc
Confidence 33333 667777777776 5662 33333333 23445555554 67777777777888888777765 34
Q ss_pred CcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcc
Q 044724 523 PPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP 602 (782)
Q Consensus 523 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 602 (782)
|..++. +..|+.||+|.|+|. .+|..
T Consensus 451 P~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 451 PEEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred chhhhh-----------------------------------------------------hhhhheecccccccc-cchHH
Confidence 444432 335777788888776 67777
Q ss_pred cccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724 603 IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 603 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 668 (782)
+..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .||+.++++++|++|++++|++.
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 777777777777777777666666777888888888888777 67777788888888888888776
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-37 Score=318.93 Aligned_cols=369 Identities=23% Similarity=0.280 Sum_probs=286.7
Q ss_pred CcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEec
Q 044724 128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDM 207 (782)
Q Consensus 128 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (782)
-+.||+++|.++.+-+..|.++++|+.+++..|.++ .||. .-....+|+.|+|.+|.|+.+. .+.+..++.|+.|||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeecccccccc-HHHHHhHhhhhhhhh
Confidence 456888888888777777888888888888888887 7774 3333445888888888777664 455555555555555
Q ss_pred ccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceecc
Q 044724 208 SYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEIT 287 (782)
Q Consensus 208 ~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 287 (782)
|. |.++ .++...|..-.++++|+|++|.|+..
T Consensus 157 Sr---------------------------------------------N~is-~i~~~sfp~~~ni~~L~La~N~It~l-- 188 (873)
T KOG4194|consen 157 SR---------------------------------------------NLIS-EIPKPSFPAKVNIKKLNLASNRITTL-- 188 (873)
T ss_pred hh---------------------------------------------chhh-cccCCCCCCCCCceEEeecccccccc--
Confidence 55 3322 23333333334455555555554422
Q ss_pred ccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCccc
Q 044724 288 ESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367 (782)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 367 (782)
....|.++.+|..|.|+.|+++ .+|...++.+++|+.|+|..|++.-..-..|.
T Consensus 189 -------------------------~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 189 -------------------------ETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred -------------------------ccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 2334556678999999999999 89988888899999999999998755455565
Q ss_pred ccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhcc
Q 044724 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC 447 (782)
Q Consensus 368 g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 447 (782)
.+++|+.|.+..|.+...-..+|..+.++++|+|+.|+++..-..|+.+++.|++|++++|.|..+-+.++.
T Consensus 243 --------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 243 --------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred --------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 589999999999999988888899999999999999999988888999999999999999999999899999
Q ss_pred CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccc
Q 044724 448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFY 527 (782)
Q Consensus 448 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 527 (782)
-+++|++|||++|+++..-+ ..|..+..|++|+|++|.+...-..+|..+++|++|||++|.++..+.+.-.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~--------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDE--------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred hcccceeEeccccccccCCh--------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 99999999999999995555 6778889999999999999877788899999999999999999866544211
Q ss_pred cccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccc
Q 044724 528 NTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607 (782)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 607 (782)
.|.| +++|+.|+|-+|++..+.-.+|.++.
T Consensus 387 ------------------------------------------------~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 387 ------------------------------------------------AFNG--LPSLRKLRLTGNQLKSIPKRAFSGLE 416 (873)
T ss_pred ------------------------------------------------hhcc--chhhhheeecCceeeecchhhhccCc
Confidence 1112 77888899999999866667889999
Q ss_pred ccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 608 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
+|+.|||.+|.|..+.|.+|..+ .|++|-++.
T Consensus 417 ~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99999999999988889999888 888887654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-39 Score=319.40 Aligned_cols=449 Identities=24% Similarity=0.348 Sum_probs=350.7
Q ss_pred EEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCC
Q 044724 69 VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTR 148 (782)
Q Consensus 69 V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 148 (782)
.+.++++.+.+... ++.++.+..++.|+.++|+++...+. +..+.+|+.|+.++|.+. ..|+.++.
T Consensus 70 l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~-------i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQ-------IGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred eeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHH-------Hhhhhhhhhhhcccccee-ecCchHHH
Confidence 56677777665322 23567889999999999999754443 888999999999999998 57889999
Q ss_pred CCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCC
Q 044724 149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS 228 (782)
Q Consensus 149 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~ 228 (782)
+..|..|+..+|+++ .+|+ .+.++.+|..|++.+|++.... ...-+++.|++||... | .-+.+|+.++. +.+
T Consensus 136 ~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~--~~~i~m~~L~~ld~~~--N-~L~tlP~~lg~-l~~ 207 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALP--ENHIAMKRLKHLDCNS--N-LLETLPPELGG-LES 207 (565)
T ss_pred Hhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCC--HHHHHHHHHHhcccch--h-hhhcCChhhcc-hhh
Confidence 999999999999998 8887 8889999999999999999884 4444599999999987 4 34688999998 999
Q ss_pred CCeEeCCC----CCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEc
Q 044724 229 LKHLSLSN----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304 (782)
Q Consensus 229 L~~L~L~~----~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l 304 (782)
|..|++.. .+|+|..+..|..++++.|.+. .+|.+...+++++..|++++|++...+
T Consensus 208 L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P------------------ 268 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP------------------ 268 (565)
T ss_pred hHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc------------------
Confidence 99999987 6788999999999999999997 688887889999999999999987543
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEE
Q 044724 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384 (782)
Q Consensus 305 ~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~ 384 (782)
..+.-+.+|++||+|+|.++ .+|..+++ + .|+.|.+.+|.+...-.+.+.+. .-.-|++|.
T Consensus 269 ----------de~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~g------T~~vLKyLr 329 (565)
T KOG0472|consen 269 ----------DEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKG------TQEVLKYLR 329 (565)
T ss_pred ----------hHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHccc------HHHHHHHHH
Confidence 33445678999999999999 79999998 6 99999999998864322211110 000011110
Q ss_pred -------ccCcc---cc-cc-CC---ccccCCCCCcEEECcCCcccccCCccccCcC---CCCEEeCCCCccccCCChhc
Q 044724 385 -------LEENH---FV-GE-IP---QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT---GLQHIIMPKNHLEGPIPVEF 446 (782)
Q Consensus 385 -------L~~n~---l~-~~-~~---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~~~~~~~ 446 (782)
++.-. -+ +. .+ .......+.+.|++++-+++ .+|+...... -.+..+++.|++. .+|..+
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L 407 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRL 407 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhh
Confidence 11100 00 01 11 12234567889999998888 5665443333 3788999999998 678777
Q ss_pred cCCCCCce-EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724 447 CQLDWLQI-LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF 525 (782)
Q Consensus 447 ~~l~~L~~-L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 525 (782)
..+..+.+ +++++|.++ .+| ..+..+++|+.|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|.+
T Consensus 408 ~~lkelvT~l~lsnn~is-fv~--------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKIS-FVP--------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred HHHHHHHHHHHhhcCccc-cch--------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 77766655 455666554 666 67788999999999999887 78999999999999999999987 56766
Q ss_pred cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724 526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN 605 (782)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (782)
... +..++.+-.++|++...-|+.+.+
T Consensus 477 ~y~-----------------------------------------------------lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 477 LYE-----------------------------------------------------LQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred Hhh-----------------------------------------------------HHHHHHHHhccccccccChHHhhh
Confidence 543 234556666778988776777999
Q ss_pred ccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 606 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
+.+|..|||.+|.+. .+|..++++++|++|++++|.+.
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999999999 89999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-36 Score=325.99 Aligned_cols=439 Identities=27% Similarity=0.326 Sum_probs=211.9
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccE
Q 044724 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH 204 (782)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 204 (782)
.-+|+.|||++|.+. ..|..+..+.+|+.|+++.|.+. .+|. ...++.+|++|.|..|.+... |..+..+++|++
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL~~n~l~~l--P~~~~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNLKNNRLQSL--PASISELKNLQY 118 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhheeccchhhcC--chhHHhhhcccc
Confidence 334666666665554 35555555666666666666655 5553 555566666666666655554 555566666666
Q ss_pred EecccCcccccccchHHHhhcCCCCCeEeCCCC--CCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcc
Q 044724 205 LDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF--SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282 (782)
Q Consensus 205 L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~--ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 282 (782)
|++++ |.+ +.+|..+.. ++.+..+..+++ +-.++... .+.+++..|.+.+.++.+ ..++.. .+++++|.+
T Consensus 119 LdlS~--N~f-~~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 119 LDLSF--NHF-GPIPLVIEV-LTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEM 190 (1081)
T ss_pred cccch--hcc-CCCchhHHh-hhHHHHHhhhcchhhhhhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchh
Confidence 66665 221 234444444 444444444432 00011111 455555555555444432 333333 455555554
Q ss_pred ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccC
Q 044724 283 HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI 362 (782)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 362 (782)
.... .....+++.+....|.+.... ..-++++.|+.++|.++...+. .. -.+|++++++.|++++.
T Consensus 191 ~~~d------ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~-p~--p~nl~~~dis~n~l~~l- 256 (1081)
T KOG0618|consen 191 EVLD------LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH-PV--PLNLQYLDISHNNLSNL- 256 (1081)
T ss_pred hhhh------hhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc-cc--cccceeeecchhhhhcc-
Confidence 3100 011111222222211111100 0123455555555555411111 11 23555555555555432
Q ss_pred CCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCC
Q 044724 363 PSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI 442 (782)
Q Consensus 363 p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 442 (782)
|+.+. .+.+|+.++..+|+++ .+|..+....+|+.|++.+|.+. .+|....+++.|++|+|..|++....
T Consensus 257 p~wi~--------~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 257 PEWIG--------ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred hHHHH--------hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccc
Confidence 23332 4555555555555553 44444555555555555555554 34444455555555555555555322
Q ss_pred ChhccCCCC-CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724 443 PVEFCQLDW-LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521 (782)
Q Consensus 443 ~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 521 (782)
+..+.-... |..|+.+.|++. ..|. + .=...+.|+.|.+.+|.++...-..+.+.+.|+.|+|++|++. .
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~-~lp~-~------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLS-TLPS-Y------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhcccc-cccc-c------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 222222222 444555555544 2221 1 1112345566666666666555445556666666666666665 2
Q ss_pred CCcc-cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC
Q 044724 522 IPPF-FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP 600 (782)
Q Consensus 522 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 600 (782)
+|.. +.+ ++.|+.|+||+|+++ .+|
T Consensus 398 fpas~~~k-----------------------------------------------------le~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 398 FPASKLRK-----------------------------------------------------LEELEELNLSGNKLT-TLP 423 (1081)
T ss_pred CCHHHHhc-----------------------------------------------------hHHhHHHhcccchhh-hhh
Confidence 2322 111 345666666666666 455
Q ss_pred cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC-CchhhhcCCCCcEEEcccCc
Q 044724 601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK-IPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 601 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~ 666 (782)
..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+|+.. +|.... -+.|++||+++|.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 66666666666666666665 445 556666666666666666532 222221 2566666666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-34 Score=313.87 Aligned_cols=480 Identities=26% Similarity=0.299 Sum_probs=361.7
Q ss_pred CEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcC
Q 044724 68 RVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLT 147 (782)
Q Consensus 68 ~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 147 (782)
+++.|+++.+.+-. .+.....+.-+|+.||+++|++... |. .+..+.+|+.|+++.|.+. ..|.+..
T Consensus 22 ~~~~ln~~~N~~l~-----~pl~~~~~~v~L~~l~lsnn~~~~f-p~------~it~l~~L~~ln~s~n~i~-~vp~s~~ 88 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLS-----RPLEFVEKRVKLKSLDLSNNQISSF-PI------QITLLSHLRQLNLSRNYIR-SVPSSCS 88 (1081)
T ss_pred HHHhhhcccccccc-----CchHHhhheeeeEEeeccccccccC-Cc------hhhhHHHHhhcccchhhHh-hCchhhh
Confidence 47777777664421 1122334444599999999998633 32 2788999999999999988 5778899
Q ss_pred CCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCC
Q 044724 148 RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMP 227 (782)
Q Consensus 148 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~ 227 (782)
++.+|++|+|..|.+. .+|. .+..+.+|++||+++|++... |..+..++.++.+..++| ... ..++. .
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N--~~~----~~lg~-~- 156 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNN--EKI----QRLGQ-T- 156 (1081)
T ss_pred hhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcc--hhh----hhhcc-c-
Confidence 9999999999999998 8887 899999999999999999876 788888899999999984 111 11222 1
Q ss_pred CCCeEeCCC-----CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccE
Q 044724 228 SLKHLSLSN-----FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS 301 (782)
Q Consensus 228 ~L~~L~L~~-----~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 301 (782)
.++.+++.. .++. +..++. .++|.+|.+. .. .+.++++|+.+....|++... .....+++.
T Consensus 157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l-------~~~g~~l~~ 223 (1081)
T KOG0618|consen 157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL-------EISGPSLTA 223 (1081)
T ss_pred cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE-------EecCcchhe
Confidence 144444433 4444 555555 6999999876 22 377888999999999888654 234457888
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCC
Q 044724 302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381 (782)
Q Consensus 302 L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~ 381 (782)
|+.+.|.+....+.+ .-.+|+++|+++|+++ .+|.++.. +.+|+.++..+|.++ .+|..+. ..++|+
T Consensus 224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~--------~~~~L~ 290 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRIS--------RITSLV 290 (1081)
T ss_pred eeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHh--------hhhhHH
Confidence 999888887433222 3468999999999999 88988887 899999999999995 4555444 688999
Q ss_pred EEEccCccccccCCccccCCCCCcEEECcCCcccccCCc-cccCcCC-CCEEeCCCCccccCCChhccCCCCCceEeccC
Q 044724 382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ-WLGNLTG-LQHIIMPKNHLEGPIPVEFCQLDWLQILDISD 459 (782)
Q Consensus 382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 459 (782)
.|.+..|.+. .+|....+.+.|++|+|..|++. ..|+ .+.-... |+.|+.+.|++.......=...+.|+.|.+.+
T Consensus 291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 9999999998 66777888999999999999998 4454 3333333 77888888887743322222456799999999
Q ss_pred CcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCC
Q 044724 460 NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS 539 (782)
Q Consensus 460 N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 539 (782)
|.+++..- ..+.+...|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..
T Consensus 369 N~Ltd~c~--------p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~----------- 428 (1081)
T KOG0618|consen 369 NHLTDSCF--------PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN----------- 428 (1081)
T ss_pred Ccccccch--------hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-----------
Confidence 99986533 46778899999999999998555566888999999999999998 55665544
Q ss_pred CCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccc
Q 044724 540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL 619 (782)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 619 (782)
+..|++|..-+|++. ..| .+..++.|+.+|+|.|+|
T Consensus 429 ------------------------------------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 429 ------------------------------------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred ------------------------------------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 457888999999988 567 899999999999999999
Q ss_pred ccc-CCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccC
Q 044724 620 TGT-IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN 665 (782)
Q Consensus 620 ~~~-~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 665 (782)
+.. +|... .-++|+.|||++|.=....-..|..+.++...++.-|
T Consensus 465 ~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 853 33333 2389999999999743344456677777777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-33 Score=291.40 Aligned_cols=387 Identities=24% Similarity=0.302 Sum_probs=276.5
Q ss_pred CCCCcEEeCCCCCCC-CcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc
Q 044724 125 LNNLKMFDLSGNSFN-NSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE 203 (782)
Q Consensus 125 l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 203 (782)
|+-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|. .++.+.+|++|.+++|++..+ -..+..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~v--hGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLISV--HGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHhh--hhhhccchhhH
Confidence 455566677777776 356777777777777777777776 6776 777777777777777777665 35666777777
Q ss_pred EEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccc
Q 044724 204 HLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH 283 (782)
Q Consensus 204 ~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 283 (782)
.+++..|+..-+ .+|..+. .+..|+.||||+|+++ ++|.
T Consensus 82 sv~~R~N~LKns-GiP~diF-------------------~l~dLt~lDLShNqL~-EvP~-------------------- 120 (1255)
T KOG0444|consen 82 SVIVRDNNLKNS-GIPTDIF-------------------RLKDLTILDLSHNQLR-EVPT-------------------- 120 (1255)
T ss_pred HHhhhccccccC-CCCchhc-------------------ccccceeeecchhhhh-hcch--------------------
Confidence 777776322211 2222222 2334444455555444 2222
Q ss_pred eeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCC
Q 044724 284 AEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP 363 (782)
Q Consensus 284 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 363 (782)
.+...+++-.|+||+|+|. +||..++-.++.|-.||||+|++... |
T Consensus 121 --------------------------------~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L-P 166 (1255)
T KOG0444|consen 121 --------------------------------NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML-P 166 (1255)
T ss_pred --------------------------------hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc-C
Confidence 1123356667778888777 77877776677777888888887633 3
Q ss_pred CcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccc-ccCCccccCcCCCCEEeCCCCccccCC
Q 044724 364 SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS-GKIPQWLGNLTGLQHIIMPKNHLEGPI 442 (782)
Q Consensus 364 ~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~ 442 (782)
+... .+..|++|+|++|.+..---..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..
T Consensus 167 PQ~R--------RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 167 PQIR--------RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred HHHH--------HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 3333 5777888888888766433344566777888888876544 467888888999999999999988 78
Q ss_pred ChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC-c
Q 044724 443 PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG-L 521 (782)
Q Consensus 443 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 521 (782)
|+.+..+++|+.|+||+|+|+. +. ...+...+|+.|+||.|+++ ..|.+++.+++|+.|.+.+|+++- -
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~--------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LN--------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-ee--------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 8999999999999999999883 33 23456788999999999998 889999999999999999999872 3
Q ss_pred CCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc
Q 044724 522 IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601 (782)
Q Consensus 522 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 601 (782)
+|..++. +..|+.+..++|.+. ..|+
T Consensus 308 iPSGIGK-----------------------------------------------------L~~Levf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 308 IPSGIGK-----------------------------------------------------LIQLEVFHAANNKLE-LVPE 333 (1255)
T ss_pred Cccchhh-----------------------------------------------------hhhhHHHHhhccccc-cCch
Confidence 5555543 457888889999887 8899
Q ss_pred ccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC 664 (782)
Q Consensus 602 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 664 (782)
.+..|..|+.|.|++|++. ..|+.+.-++.|+.||+..|.=--..|.-=..-++|+.-|+.+
T Consensus 334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 9999999999999999998 7899999999999999999954423443222235666665544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-32 Score=282.83 Aligned_cols=372 Identities=23% Similarity=0.340 Sum_probs=286.8
Q ss_pred CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccC
Q 044724 175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSN 254 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~ 254 (782)
+-.+-.|+++|.++|...|.....+++++.|.|.. ..+ ..+|+.++. +.+|+.|.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr--t~L-~~vPeEL~~-------------------lqkLEHLs~~H 64 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR--TKL-EQVPEELSR-------------------LQKLEHLSMAH 64 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech--hhh-hhChHHHHH-------------------Hhhhhhhhhhh
Confidence 34455677777777655566666666776666665 222 245555554 45556666667
Q ss_pred ceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCC
Q 044724 255 NHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ 334 (782)
Q Consensus 255 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 334 (782)
|++. .+. ..+..++.|+.+.+..|++... .+|..+..+..|+.||||+|++.
T Consensus 65 N~L~-~vh-GELs~Lp~LRsv~~R~N~LKns--------------------------GiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 65 NQLI-SVH-GELSDLPRLRSVIVRDNNLKNS--------------------------GIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred hhhH-hhh-hhhccchhhHHHhhhccccccC--------------------------CCCchhcccccceeeecchhhhh
Confidence 7765 222 2366777778777777766422 23445557788999999999999
Q ss_pred ccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcc
Q 044724 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL 414 (782)
Q Consensus 335 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 414 (782)
.+|..+-. .+++-+|+||+|++..+....|. +++.|-.|||++|++. .+|+....+..|++|+|++|.+
T Consensus 117 -EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfi--------nLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 117 -EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFI--------NLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred -hcchhhhh-hcCcEEEEcccCccccCCchHHH--------hhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 89999877 68999999999999744333333 7899999999999998 5677788999999999999998
Q ss_pred cccCCccccCcCCCCEEeCCCCccc-cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCc
Q 044724 415 SGKIPQWLGNLTGLQHIIMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493 (782)
Q Consensus 415 ~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~ 493 (782)
...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+| +.+.++.+|+.|+||+|+
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP--------ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP--------ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch--------HHHhhhhhhheeccCcCc
Confidence 7544455667788889999887533 358889999999999999999998 788 456788999999999999
Q ss_pred ceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCC
Q 044724 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSN 573 (782)
Q Consensus 494 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (782)
|+ ..........+|++|++|.|+++ .+|.++..
T Consensus 257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------------------------- 289 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------------------------- 289 (1255)
T ss_pred ee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------------------------
Confidence 98 55555667788999999999998 56666543
Q ss_pred eeeecchhhcccceeeccCCccC-ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhh
Q 044724 574 AYTYQGRVLSLLSGIDLSCNKLI-GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLV 652 (782)
Q Consensus 574 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 652 (782)
++.|+.|++.+|+++ .-||+.++.+..|+++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.
T Consensus 290 --------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 290 --------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred --------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 557888899999876 348999999999999999999998 88999999999999999999988 7899999
Q ss_pred cCCCCcEEEcccCcCcccCCC
Q 044724 653 ELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 653 ~l~~L~~L~ls~N~l~~~~p~ 673 (782)
-++.|+.||+..|.=-...|.
T Consensus 360 lL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hcCCcceeeccCCcCccCCCC
Confidence 999999999999865444443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.5e-22 Score=244.29 Aligned_cols=367 Identities=17% Similarity=0.188 Sum_probs=216.4
Q ss_pred CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCC------CccCCCCcccccccCC-CCCcEEeCCCCCC
Q 044724 66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIA------GCVENEGASSREVTRL-NNLKMFDLSGNSF 138 (782)
Q Consensus 66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l 138 (782)
+.+|.++.+.-.. .....++...|.++++|+.|.+..+... ..+|. .|..+ ++|+.|++.++.+
T Consensus 531 ~~~v~~i~l~~~~---~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~------~~~~lp~~Lr~L~~~~~~l 601 (1153)
T PLN03210 531 TKKVLGITLDIDE---IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE------GFDYLPPKLRLLRWDKYPL 601 (1153)
T ss_pred cceeeEEEeccCc---cceeeecHHHHhcCccccEEEEecccccccccceeecCc------chhhcCcccEEEEecCCCC
Confidence 4467777664332 2345566778899999999998766432 12222 24555 3588888888887
Q ss_pred CCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccc
Q 044724 139 NNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNF 218 (782)
Q Consensus 139 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 218 (782)
. .+|..| ...+|++|++++|.+. .++. .+..+++|++|+|+++...... | .+..+++|++|++++ +.....+
T Consensus 602 ~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~i-p-~ls~l~~Le~L~L~~--c~~L~~l 673 (1153)
T PLN03210 602 R-CMPSNF-RPENLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEI-P-DLSMATNLETLKLSD--CSSLVEL 673 (1153)
T ss_pred C-CCCCcC-CccCCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcC-C-ccccCCcccEEEecC--CCCcccc
Confidence 6 566666 4688888999888887 6775 6778888899998887643332 4 477788888888888 4434556
Q ss_pred hHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCC
Q 044724 219 LQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298 (782)
Q Consensus 219 ~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 298 (782)
|..+.. +++|+.|+++ +|..-..+|.. .++++|+.|++++|......
T Consensus 674 p~si~~-L~~L~~L~L~------------------~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~------------ 720 (1153)
T PLN03210 674 PSSIQY-LNKLEDLDMS------------------RCENLEILPTG--INLKSLYRLNLSGCSRLKSF------------ 720 (1153)
T ss_pred chhhhc-cCCCCEEeCC------------------CCCCcCccCCc--CCCCCCCEEeCCCCCCcccc------------
Confidence 666555 5555555544 43322233332 14555555555554322111
Q ss_pred ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724 299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT 378 (782)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~ 378 (782)
|. ..++|+.|++++|.+. .+|..+ . +++|++|++.++.... ++..+....+......+
T Consensus 721 ---------------p~---~~~nL~~L~L~~n~i~-~lP~~~-~-l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 721 ---------------PD---ISTNISWLDLDETAIE-EFPSNL-R-LENLDELILCEMKSEK-LWERVQPLTPLMTMLSP 778 (1153)
T ss_pred ---------------cc---ccCCcCeeecCCCccc-cccccc-c-ccccccccccccchhh-ccccccccchhhhhccc
Confidence 10 1234556666666554 455443 1 4566666555433211 00000000000011245
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 458 (782)
+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|++|++++|.....+|.. .++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 67777777776666666667777777777777665444556554 5667777777766544344432 2467777777
Q ss_pred CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN 517 (782)
Q Consensus 459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 517 (782)
+|.++ .+| .++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP--------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVP--------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cCh--------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77776 456 456667777777777644323455566667777777777764
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.9e-22 Score=243.94 Aligned_cols=228 Identities=25% Similarity=0.279 Sum_probs=124.6
Q ss_pred CCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP 395 (782)
Q Consensus 316 ~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~ 395 (782)
.+..+++|+.|++++|...+.+|..+ . +++|+.|++++|...+.+|. ..++|++|++++|.+. .+|
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~-l~sL~~L~Lsgc~~L~~~p~-----------~~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-N-LKSLYRLNLSGCSRLKSFPD-----------ISTNISWLDLDETAIE-EFP 741 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-C-CCCCCEEeCCCCCCcccccc-----------ccCCcCeeecCCCccc-ccc
Confidence 34456667777777664444666554 2 56777777776654443332 1345666666666654 344
Q ss_pred ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724 396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475 (782)
Q Consensus 396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 475 (782)
..+ .+++|++|++.++.... +.. .+....+..+...++|+.|++++|...+.+|
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~-l~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-------- 795 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEK-LWE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-------- 795 (1153)
T ss_pred ccc-cccccccccccccchhh-ccc----------------cccccchhhhhccccchheeCCCCCCccccC--------
Confidence 333 34556666555433210 000 0011111122233556666666666555566
Q ss_pred hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccc
Q 044724 476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE 555 (782)
Q Consensus 476 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (782)
..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|..
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------ 844 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------------------ 844 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------------------
Confidence 445566666666666654333455444 5666667776666433322221
Q ss_pred cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN 635 (782)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 635 (782)
..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+--..+|..+..+++|+.
T Consensus 845 --------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 845 --------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred --------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 234666777777766 46666777777777777763322245666666777777
Q ss_pred EecCCC
Q 044724 636 LDLSYN 641 (782)
Q Consensus 636 LdLs~N 641 (782)
+++++|
T Consensus 898 L~l~~C 903 (1153)
T PLN03210 898 VDFSDC 903 (1153)
T ss_pred eecCCC
Confidence 777666
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=7.3e-25 Score=217.92 Aligned_cols=294 Identities=20% Similarity=0.223 Sum_probs=191.4
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCC-CccccCCChhccCCCCCceEec
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK-NHLEGPIPVEFCQLDWLQILDI 457 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 457 (782)
.-++++|..|+|+.+.+.+|+.+++|++|||++|.|+.+.|++|.++.+|.+|.+.+ |+|+......|.++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345566667777766666777777777777777777777777777777776666555 7777666677777777777777
Q ss_pred cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC-ccccccccccccc
Q 044724 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP-PFFYNTALHESYN 536 (782)
Q Consensus 458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~ 536 (782)
.-|++.-... +.|..++++..|.+-+|.+...-...|..+.+++.+.+..|++..... ++......+ ...
T Consensus 148 Nan~i~Cir~--------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~-~~i 218 (498)
T KOG4237|consen 148 NANHINCIRQ--------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM-NPI 218 (498)
T ss_pred ChhhhcchhH--------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh-chh
Confidence 7777764444 566677777777777777763333467777777777777777432110 111000000 000
Q ss_pred CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC-cccccccccceeecc
Q 044724 537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP-PPIGNLTRIQILNLS 615 (782)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls 615 (782)
...+..- .++..... ......... .|. ..+..+..-..+.+...+.-| ..|..+++|+.|+|+
T Consensus 219 etsgarc--~~p~rl~~--~Ri~q~~a~-----------kf~-c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 219 ETSGARC--VSPYRLYY--KRINQEDAR-----------KFL-CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred hccccee--cchHHHHH--HHhcccchh-----------hhh-hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0000000 00000000 000000000 000 001112111222333333444 458999999999999
Q ss_pred cccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724 616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGL 695 (782)
Q Consensus 616 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~ 695 (782)
+|+++++-+.+|.++..+++|.|..|+|...-...|.++..|+.|+|.+|+++...|..+.....+..+.+.+|||.|+|
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 99999999999999999999999999999777788999999999999999999999998888888999999999999998
Q ss_pred CC
Q 044724 696 PL 697 (782)
Q Consensus 696 ~l 697 (782)
.+
T Consensus 363 ~l 364 (498)
T KOG4237|consen 363 RL 364 (498)
T ss_pred ch
Confidence 65
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-24 Score=216.25 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=85.6
Q ss_pred CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccC-CcCcCcCChhhhcCCC
Q 044724 97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSY-NRLEGSIDVKEFDSFN 175 (782)
Q Consensus 97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ip~~~~~~l~ 175 (782)
.-..++|..|.|+...+. +|+.+++||.||||+|.|+.+-|.+|.++++|..|-+.+ |+|+ .+|.+.|++|.
T Consensus 68 ~tveirLdqN~I~~iP~~------aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG------AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccCCcccCChh------hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHH
Confidence 456788999998754443 488899999999999999988899999998888877766 8888 88888889999
Q ss_pred CCCEEEcccCCCCCccCCCCCCCCCCccEEeccc
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 209 (782)
.|+.|.+.-|++.-.. .+.|..+++|..|.+.+
T Consensus 141 slqrLllNan~i~Cir-~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIR-QDALRDLPSLSLLSLYD 173 (498)
T ss_pred HHHHHhcChhhhcchh-HHHHHHhhhcchhcccc
Confidence 9998888888887764 66777777777777777
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.8e-21 Score=220.67 Aligned_cols=243 Identities=26% Similarity=0.344 Sum_probs=151.3
Q ss_pred CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
+|+.|++++|+++ .+|.. .++|++|++++|+++. +|. ..++|+.|++++|.++. +|.. .
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~-----------lp~sL~~L~Ls~N~L~~-Lp~l---p 281 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPV-----------LPPGLLELSIFSNPLTH-LPAL---P 281 (788)
T ss_pred CCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccC-----------cccccceeeccCCchhh-hhhc---h
Confidence 5666667666666 45532 4667777777776663 232 13456667777776653 3332 2
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l 481 (782)
.+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|. ..
T Consensus 282 ~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----------lp 341 (788)
T PRK15387 282 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----------LP 341 (788)
T ss_pred hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----------cc
Confidence 45666777777766 33432 3567777777777664 3322 2346666777777663 441 11
Q ss_pred CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK 561 (782)
Q Consensus 482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (782)
.+|++|+|++|+++ .+|.. .++|+.|++++|++++ +|..
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l------------------------------------ 380 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL------------------------------------ 380 (788)
T ss_pred cccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc------------------------------------
Confidence 45677777777776 34432 2456667777777663 3321
Q ss_pred cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724 562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641 (782)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 641 (782)
+.+|+.|++++|+|++ +|... ++|+.|++++|+|++ +|... .+|+.|++++|
T Consensus 381 --------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~N 432 (788)
T PRK15387 381 --------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRN 432 (788)
T ss_pred --------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccC
Confidence 2346778888888874 55432 467788888888874 56533 45777888888
Q ss_pred ccccCCchhhhcCCCCcEEEcccCcCcccCCCCc
Q 044724 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675 (782)
Q Consensus 642 ~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~ 675 (782)
+|+ .+|..+.+++.|+.++|++|+|++.+|..+
T Consensus 433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 887 678888888888888888888887776643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.7e-21 Score=219.21 Aligned_cols=267 Identities=25% Similarity=0.325 Sum_probs=196.1
Q ss_pred CCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEE
Q 044724 247 NQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLL 326 (782)
Q Consensus 247 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 326 (782)
-..|+++.+.++ .+|+. +. ++|+.|++.+|+++..+ . ..++|++|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~-l~--~~L~~L~L~~N~Lt~LP----------------------------~---lp~~Lk~L 247 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLTSLP----------------------------A---LPPELRTL 247 (788)
T ss_pred CcEEEcCCCCCC-cCCcc-hh--cCCCEEEccCCcCCCCC----------------------------C---CCCCCcEE
Confidence 456777777776 56653 22 35777777777665321 0 13678888
Q ss_pred EccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcE
Q 044724 327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG 406 (782)
Q Consensus 327 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 406 (782)
++++|+++ .+|.. .++|+.|++++|.++. +|. ...+|+.|++++|+++. +|.. .++|+.
T Consensus 248 dLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~-Lp~-----------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~ 306 (788)
T PRK15387 248 EVSGNQLT-SLPVL----PPGLLELSIFSNPLTH-LPA-----------LPSGLCKLWIFGNQLTS-LPVL---PPGLQE 306 (788)
T ss_pred EecCCccC-cccCc----ccccceeeccCCchhh-hhh-----------chhhcCEEECcCCcccc-cccc---ccccce
Confidence 88888888 66642 4688888888888863 332 13567888899998874 4432 467899
Q ss_pred EECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCE
Q 044724 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSH 486 (782)
Q Consensus 407 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~ 486 (782)
|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++++ +|. ...+|+.
T Consensus 307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~-----------lp~~L~~ 366 (788)
T PRK15387 307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPT-----------LPSELYK 366 (788)
T ss_pred eECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCC-----------CCcccce
Confidence 9999998885 4442 2457788899999885 4432 2579999999999984 552 1357888
Q ss_pred EEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEE
Q 044724 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566 (782)
Q Consensus 487 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (782)
|++++|++++ +|.. ..+|+.|++++|++++ +|..
T Consensus 367 L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l----------------------------------------- 400 (788)
T PRK15387 367 LWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL----------------------------------------- 400 (788)
T ss_pred ehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-----------------------------------------
Confidence 9999999984 5643 3579999999999984 4421
Q ss_pred EEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC
Q 044724 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK 646 (782)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 646 (782)
.++|+.|++++|++++ +|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.
T Consensus 401 ---------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 401 ---------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ---------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 2358889999999985 67543 46888999999999 7899999999999999999999999
Q ss_pred CchhhhcCC
Q 044724 647 IPRQLVELN 655 (782)
Q Consensus 647 ip~~l~~l~ 655 (782)
+|..+..+.
T Consensus 461 ~~~~L~~l~ 469 (788)
T PRK15387 461 TLQALREIT 469 (788)
T ss_pred HHHHHHHHh
Confidence 998875543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=6.8e-20 Score=209.42 Aligned_cols=180 Identities=24% Similarity=0.367 Sum_probs=87.7
Q ss_pred ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724 299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT 378 (782)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~ 378 (782)
...|+++++.++. +|..+ .+.|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+ ..
T Consensus 180 ~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l----------~~ 241 (754)
T PRK15370 180 KTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL----------PD 241 (754)
T ss_pred ceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh----------hc
Confidence 3455555544443 22212 135666666666665 4555442 356666666666552 33322 13
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 458 (782)
+|+.|++++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|++++|++++ +|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 4556666666655 3444332 34566666666555 3444332 355556666655553 333221 245555555
Q ss_pred CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
+|+++. +|. .+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 313 ~N~Lt~-LP~--------~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 313 SNSLTA-LPE--------TL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred CCcccc-CCc--------cc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 555552 331 11 1355555555555552 343332 45555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.7e-19 Score=206.22 Aligned_cols=162 Identities=23% Similarity=0.412 Sum_probs=110.3
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++|+.|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~----------s~L~~L~Ls~N~L~-~LP~~l~- 282 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP----------SALQSLDLFHNKIS-CLPENLP- 282 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh----------CCCCEEECcCCccC-ccccccC-
Confidence 46788888888887 6776553 46888888888876 4454332 46788888888887 4565443
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
++|+.|++++|++++ +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|. .+
T Consensus 283 -~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~--------~l-- 344 (754)
T PRK15370 283 -EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPA--------SL-- 344 (754)
T ss_pred -CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CCh--------hh--
Confidence 478888888888874 454432 467788888888874 444332 578888888888774 552 22
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
.++|+.|++++|+++ .+|..+ .++|+.|++++|+++.
T Consensus 345 ~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 345 PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 267888888888877 455544 2577888888887763
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=4.2e-20 Score=196.73 Aligned_cols=134 Identities=21% Similarity=0.156 Sum_probs=59.7
Q ss_pred EEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc------cCCcccc
Q 044724 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG------EIPQSLS 399 (782)
Q Consensus 326 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~ 399 (782)
|+|..+.+++.--..++..++.|++|+++++.++......+ +..+...+.+++++++++.+.+ .++..+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i----~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKAL----ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHH----HHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 45555555422222232335566666666666543211111 1111134556666666555441 1223344
Q ss_pred CCCCCcEEECcCCcccccCCccccCcCC---CCEEeCCCCcccc----CCChhccCC-CCCceEeccCCcce
Q 044724 400 KCFLLKGLYLNNNNLSGKIPQWLGNLTG---LQHIIMPKNHLEG----PIPVEFCQL-DWLQILDISDNNIS 463 (782)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~ 463 (782)
.+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 4555555555555555433433333333 5555555555442 112223333 44555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=7.8e-20 Score=194.67 Aligned_cols=281 Identities=22% Similarity=0.245 Sum_probs=201.8
Q ss_pred EEEcccCcCccc-CCCcccccccccCCCCCCCCEEEccCcccccc----CCccccCCCCCcEEECcCCcccc------cC
Q 044724 350 CFNISMNALDGS-IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE----IPQSLSKCFLLKGLYLNNNNLSG------KI 418 (782)
Q Consensus 350 ~L~Ls~n~l~~~-~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~------~~ 418 (782)
.|+|..+.+++. .+..+. .+..|++++++++.++.. ++..+...+.+++++++++.+.+ .+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~--------~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~ 73 (319)
T cd00116 2 QLSLKGELLKTERATELLP--------KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73 (319)
T ss_pred ccccccCcccccchHHHHH--------HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence 467777777632 222222 567799999999998543 45566677889999999998862 23
Q ss_pred CccccCcCCCCEEeCCCCccccCCChhccCCCC---CceEeccCCcceeeCCCCccccchhhhcCC-CCCCEEEcCCCcc
Q 044724 419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDW---LQILDISDNNISGSLPSCFHLLSIEQINGL-SGLSHLILAHNNL 494 (782)
Q Consensus 419 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l-~~L~~L~L~~N~l 494 (782)
+..+..+++|++|++++|.+.+..+..+..+.. |++|++++|++++.....+. ..+..+ ++|+.|++++|.+
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA----KGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH----HHHHhCCCCceEEEcCCCcC
Confidence 456777899999999999998777776666655 99999999998742111100 345566 8999999999999
Q ss_pred eee----cCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEe
Q 044724 495 EGE----VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTT 570 (782)
Q Consensus 495 ~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (782)
++. ++..+..+++|++|++++|.+++.....+...-
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l---------------------------------------- 189 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL---------------------------------------- 189 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH----------------------------------------
Confidence 843 344567788999999999998853211111000
Q ss_pred cCCeeeecchhhcccceeeccCCccCcc----CCcccccccccceeecccccccccCCcccc-----CCCCCCEEecCCC
Q 044724 571 KSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIGNLTRIQILNLSHNNLTGTIPSTFS-----KLEAYRNLDLSYN 641 (782)
Q Consensus 571 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N 641 (782)
...++|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|
T Consensus 190 ---------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 190 ---------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred ---------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 0034799999999998743 344567788999999999999864333332 2479999999999
Q ss_pred ccc----cCCchhhhcCCCCcEEEcccCcCccc----CCCCcccc-CCCCcccccCCCC
Q 044724 642 KLN----GKIPRQLVELNAFVVFSFACNNLSGK----IPELTAQF-ATFNESSYKGNPF 691 (782)
Q Consensus 642 ~l~----~~ip~~l~~l~~L~~L~ls~N~l~~~----~p~~~~~~-~~l~~~~~~gNp~ 691 (782)
.++ ..++..+..++.|+++++++|+++.. .......+ ..+..+++.+|||
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 997 23455677788999999999999854 33333344 5677888888885
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.2e-18 Score=154.31 Aligned_cols=163 Identities=31% Similarity=0.565 Sum_probs=104.9
Q ss_pred CcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503 (782)
Q Consensus 424 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 503 (782)
++...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+| ..++.+++|+.|+++-|++. ..|..|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp--------~~issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELP--------TSISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcC--------hhhhhchhhhheecchhhhh-cCccccC
Confidence 3445556666666666 45555666677777777777776 455 45667777777777777776 6777788
Q ss_pred CCCCCCEEEccCCcCCC-cCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhh
Q 044724 504 GLNQLQLLDLSDNNLHG-LIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL 582 (782)
Q Consensus 504 ~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 582 (782)
.++.|+.|||++|++.. ..|..|.. +
T Consensus 100 s~p~levldltynnl~e~~lpgnff~-----------------------------------------------------m 126 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFY-----------------------------------------------------M 126 (264)
T ss_pred CCchhhhhhccccccccccCCcchhH-----------------------------------------------------H
Confidence 88888888888877763 22322211 3
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVE 653 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 653 (782)
+.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.+|+++ .+|..+++
T Consensus 127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 45666666666666 56666666666666666666666 55666666666666666666666 45555444
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=173.94 Aligned_cols=118 Identities=33% Similarity=0.618 Sum_probs=107.5
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCccc-cCCCCcccccCCCCCCCCCCCC-CC
Q 044724 664 CNNLSGKIPELTAQ-FATFNESSYKGNPFLCGLPLPI-CR 701 (782)
Q Consensus 664 ~N~l~~~~p~~~~~-~~~l~~~~~~gNp~lC~~~l~~-C~ 701 (782)
+|+++|.+|..+.. +..+..+++.+|+++|+.|... |.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999985544 3355678899999999976433 74
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.4e-17 Score=146.02 Aligned_cols=179 Identities=28% Similarity=0.462 Sum_probs=138.6
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL 398 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 398 (782)
++.+++.|.+|+|+++ .+|..+++ +.+|+.|++++|++. ..|.+++ .+++|+.|++.-|++. ..|..|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~is--------sl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSIS--------SLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhh--------hchhhhheecchhhhh-cCcccc
Confidence 5667888999999998 88888888 889999999999987 4555555 6888888888888887 778888
Q ss_pred cCCCCCcEEECcCCcccc-cCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhh
Q 044724 399 SKCFLLKGLYLNNNNLSG-KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQ 477 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 477 (782)
+.++.|+.|||.+|++.. ..|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+| ..
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp--------ke 168 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP--------KE 168 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc--------HH
Confidence 888888888888888864 46777778888888888888887 67778888888888888888876 567 56
Q ss_pred hcCCCCCCEEEcCCCcceeecCccccCCC---CCCEEEccCCcCCC
Q 044724 478 INGLSGLSHLILAHNNLEGEVPVQLCGLN---QLQLLDLSDNNLHG 520 (782)
Q Consensus 478 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~ 520 (782)
++.++.|++|.+.+|+++ .+|..++++. +=+.+.+.+|++..
T Consensus 169 ig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 777888888888888887 6666655442 22334455555543
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=6.6e-14 Score=160.17 Aligned_cols=152 Identities=29% Similarity=0.435 Sum_probs=94.1
Q ss_pred CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCC----cccceEecC--CCC--CEEEEEcCCCCCccccccccC
Q 044724 17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCC----QWANVECNN--TTG--RVIQLYLSNTRSMELEEWYLN 88 (782)
Q Consensus 17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C----~w~gv~C~~--~~~--~V~~L~L~~~~~~~~~~~~~~ 88 (782)
...+.++|.+||+++|+++.++.. .+|.. +.|| .|.||.|+. .++ +|+.|+|+++.+. |. +
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~--i- 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF--I- 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc--C-
Confidence 346678899999999999976542 47953 3443 799999952 222 4777777766552 21 1
Q ss_pred cccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh
Q 044724 89 AYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV 168 (782)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~ 168 (782)
+..+..+++|++|+|++|.+.|.+|.. ++.+++|++|+|++|.+++.+|+.++++++|++|+|++|.++|.+|.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPS------LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChH------HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 223555666666666666666655543 56666666666666666666666666666666666666666666665
Q ss_pred hhhcC-CCCCCEEEcccCC
Q 044724 169 KEFDS-FNNLEVLDMKRNE 186 (782)
Q Consensus 169 ~~~~~-l~~L~~L~Ls~n~ 186 (782)
.+.. ..++..+++.+|.
T Consensus 509 -~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 509 -ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -HHhhccccCceEEecCCc
Confidence 3433 2345555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=7.6e-14 Score=146.17 Aligned_cols=195 Identities=30% Similarity=0.521 Sum_probs=140.0
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
.+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++++++.|+++ ..|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4555667788888887 67777777778888888888886 77888888888888888888887 6777777777 8888
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccc
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY 535 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 535 (782)
-+++|+++ .+| +.++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++.. +|+.+..+
T Consensus 149 i~sNNkl~-~lp--------~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L------ 211 (722)
T KOG0532|consen 149 IVSNNKLT-SLP--------EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL------ 211 (722)
T ss_pred EEecCccc-cCC--------cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC------
Confidence 88888887 566 45667778888888888877 667777788888888888887763 33333222
Q ss_pred cCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecc
Q 044724 536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS 615 (782)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 615 (782)
.|..||+|+|+++ .||-.|..++.|++|-|.
T Consensus 212 ------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 212 ------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeeec
Confidence 2566777777777 677777777777777777
Q ss_pred cccccccCCcccc---CCCCCCEEecCCC
Q 044724 616 HNNLTGTIPSTFS---KLEAYRNLDLSYN 641 (782)
Q Consensus 616 ~N~l~~~~p~~~~---~l~~L~~LdLs~N 641 (782)
+|.+. ..|..+. ...--++|+..-+
T Consensus 243 nNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 243 NNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77777 4444432 2233345555555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.7e-13 Score=142.05 Aligned_cols=195 Identities=28% Similarity=0.439 Sum_probs=146.4
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|.++||+.|+++ .+| ..+..
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp--------~~lC~ 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLP--------DGLCD 142 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCC--------hhhhc
Confidence 444567788889887 78888888888888888888887 67888888888999999999887 556 23333
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
+ -|+.|.+++|+++ .+|..++....|..||.+.|.+.. +|..++.
T Consensus 143 l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-------------------------------- 187 (722)
T KOG0532|consen 143 L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-------------------------------- 187 (722)
T ss_pred C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhh--------------------------------
Confidence 3 3788888888887 777788888888888888888873 3333322
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
+.+|+.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+
T Consensus 188 ---------------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 188 ---------------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ---------------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 556778888888887 567777755 4888888888888 7888888888888888888
Q ss_pred CccccCCchhhhc---CCCCcEEEcccCc
Q 044724 641 NKLNGKIPRQLVE---LNAFVVFSFACNN 666 (782)
Q Consensus 641 N~l~~~ip~~l~~---l~~L~~L~ls~N~ 666 (782)
|.|+ ..|..+.. ..-.++|+..-.+
T Consensus 244 NPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 244 NPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8887 45555433 3344566666554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.4e-11 Score=134.99 Aligned_cols=123 Identities=34% Similarity=0.498 Sum_probs=68.8
Q ss_pred EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC-CCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724 382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT-GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN 460 (782)
Q Consensus 382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 460 (782)
.+++..|.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666532222 2334456777777777776 4444444553 6666667666666 34445566666666666666
Q ss_pred cceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724 461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN 517 (782)
Q Consensus 461 ~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 517 (782)
+++. +| ...+..++|+.|++++|+++ .+|........|+++.+++|+
T Consensus 174 ~l~~-l~--------~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLSD-LP--------KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhh-hh--------hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 6663 33 12224556666666666665 444443344445566666554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.3e-11 Score=133.40 Aligned_cols=198 Identities=35% Similarity=0.506 Sum_probs=101.4
Q ss_pred EEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCC-CCceEeccCCcceeeCCCCccccchhhhcCCCCC
Q 044724 406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLD-WLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484 (782)
Q Consensus 406 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L 484 (782)
.++++.|.+... ...+..++.++.|++.+|.++ .++......+ +|+.|++++|++. .+| ..++.+++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~--------~~~~~l~~L 165 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP--------SPLRNLPNL 165 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh--------hhhhccccc
Confidence 455555555311 122333455666666666665 3333344442 5666666666665 232 234556666
Q ss_pred CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccccc
Q 044724 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE 564 (782)
Q Consensus 485 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (782)
+.|++++|+++ .+|......++|+.|++++|+++.. |....
T Consensus 166 ~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~------------------------------------- 206 (394)
T COG4886 166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIE------------------------------------- 206 (394)
T ss_pred cccccCCchhh-hhhhhhhhhhhhhheeccCCccccC-chhhh-------------------------------------
Confidence 66666666665 3443333555666666666665522 21110
Q ss_pred EEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
.+..|++|++++|.+. .++..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++
T Consensus 207 ----------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 207 ----------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ----------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 0223555556655432 34445555555555556666555 22455555555666666666665
Q ss_pred cCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724 645 GKIPRQLVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 645 ~~ip~~l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
. ++. +..+..++.|++++|.++...|.
T Consensus 269 ~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 S-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred c-ccc-ccccCccCEEeccCccccccchh
Confidence 2 222 55555666666666655555444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.3e-11 Score=112.95 Aligned_cols=133 Identities=26% Similarity=0.354 Sum_probs=53.0
Q ss_pred ccCCCCCCEEeCCCCCCCCccCCCCccccccc-CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724 92 FTPFQQLESLSLSANNIAGCVENEGASSREVT-RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE 170 (782)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~ 170 (782)
+.+..++++|+|++|.|+..- . ++ .+.+|+.|||++|.++.. +.+..+++|++|++++|+++ .++...
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~-------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-N-------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGL 83 (175)
T ss_dssp ----------------------S---------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccccccccccc-c-------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccch
Confidence 345567899999999997432 1 55 588999999999999863 46888999999999999998 776522
Q ss_pred hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCC
Q 044724 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS 235 (782)
Q Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~ 235 (782)
...+++|++|++++|+|.....-..+..+++|++|++.+|...-....-..+...+|+|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 35689999999999999876534567789999999999965433333222333338888888753
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=5.8e-11 Score=115.15 Aligned_cols=132 Identities=25% Similarity=0.239 Sum_probs=103.8
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
....|+++||++|.|+ .+.++..-.+.++.|++++|.+... ..+..+++|+.|||++|.++. +...-..+.+.+.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 4567899999999887 5566677788899999999998733 237888999999999998873 44444567788999
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec-CccccCCCCCCEEEccCCcCCCc
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV-PVQLCGLNQLQLLDLSDNNLHGL 521 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 521 (782)
.|++|.+... ..++++-+|..||+++|+|.... ...++++|-|+.+.|.+|++.+.
T Consensus 358 ~La~N~iE~L----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETL----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhhh----------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999988632 45677888999999999987432 34688899999999999999854
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=6.1e-11 Score=114.95 Aligned_cols=87 Identities=29% Similarity=0.300 Sum_probs=47.1
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCC-chhhhcCCCCcEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI-PRQLVELNAFVVF 660 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L 660 (782)
+++|+.||||+|.++ .+..+=..+-+.+.|+|+.|.|... +.++.+-+|+.||+++|+|.... -..+++++-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 344555555555555 2333434455556666666655421 23555566666666666665321 1245666666666
Q ss_pred EcccCcCcccC
Q 044724 661 SFACNNLSGKI 671 (782)
Q Consensus 661 ~ls~N~l~~~~ 671 (782)
.|.+|.+.+.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 66666666543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=2e-11 Score=121.33 Aligned_cols=95 Identities=29% Similarity=0.353 Sum_probs=46.5
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhc---CCCCcEEEcccCcCccc----CCCcccccccccCCCCCCCCEEEccCcccc
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDI---LPSLSCFNISMNALDGS----IPSSFEGHMFSKNFNLTNVRWLLLEENHFV 391 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~----~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~ 391 (782)
.+..++.+++++|.+...-...+... .+.|+..++++- ++|. +|+.+.- +-..+..+++|++++||+|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~-l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM-LSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-HHHHHhcCCceeEeeccccccC
Confidence 45677788888887753333333322 345566665542 2222 2222110 0011113556666666666665
Q ss_pred ccCCcc----ccCCCCCcEEECcCCccc
Q 044724 392 GEIPQS----LSKCFLLKGLYLNNNNLS 415 (782)
Q Consensus 392 ~~~~~~----l~~l~~L~~L~Ls~N~l~ 415 (782)
-..+.. +..+..|++|.|.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 433332 234566666666666654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.4e-11 Score=120.12 Aligned_cols=212 Identities=23% Similarity=0.248 Sum_probs=150.9
Q ss_pred cCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccC--CChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724 399 SKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGP--IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 475 (782)
+++.+|+.+.|.+..+..... .....|++++.|||+.|-+... +-.....+|+|+.|+++.|++.....+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence 457789999999988863221 3667899999999999987743 233456789999999999998643332
Q ss_pred hhhcCCCCCCEEEcCCCcceee-cCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccc
Q 044724 476 EQINGLSGLSHLILAHNNLEGE-VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNT 554 (782)
Q Consensus 476 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (782)
..-..++.|+.|.|+.|.++.. +......+|+|+.|+|..|...+. ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~---------------------------- 240 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KAT---------------------------- 240 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecc----------------------------
Confidence 2223578899999999998732 233456789999999999962211 000
Q ss_pred ccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccC-Ccccccccccceeeccccccccc-CCcc-----c
Q 044724 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI-PPPIGNLTRIQILNLSHNNLTGT-IPST-----F 627 (782)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----~ 627 (782)
...++..|+.|||++|++...- -...+.++.|+.|+++.+.++.. +|+. -
T Consensus 241 -----------------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 241 -----------------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred -----------------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 0123667999999999987432 14578899999999999998853 3333 3
Q ss_pred cCCCCCCEEecCCCccccCCc--hhhhcCCCCcEEEcccCcCcccC
Q 044724 628 SKLEAYRNLDLSYNKLNGKIP--RQLVELNAFVVFSFACNNLSGKI 671 (782)
Q Consensus 628 ~~l~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~~~~ 671 (782)
...++|+.|+++.|++.. .+ ..+..+.+|+.|....|.++.+-
T Consensus 298 ~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccccceeeecccCcccc-ccccchhhccchhhhhhcccccccccc
Confidence 567899999999999963 22 24555677788888888887543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-10 Score=119.11 Aligned_cols=157 Identities=22% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCCcEEeCCCCCCCCcch-hhcCCCCCCCEEEccCCcCcCcCC-h-hhhcCCCCCCEEEcccCCCCCccCCCCCCCCC
Q 044724 124 RLNNLKMFDLSGNSFNNSIL-SSLTRLSSVRSLKLSYNRLEGSID-V-KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFK 200 (782)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ip-~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 200 (782)
++.+|+...|.+........ +....|++++.||||+|-+. ... . .....+|+|+.|+|+.|++....-...-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45555555555554432111 23445556666666655554 211 1 12345556666666666554332111122445
Q ss_pred CccEEecccCcccccccchHHHhhcCCCCCeEeCCCC-CC---C--CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcE
Q 044724 201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF-SP---S--NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKI 274 (782)
Q Consensus 201 ~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~-ip---~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 274 (782)
.|+.|.++. +.++......+...+|+|+.|+|+++ .. . ...+..|+.|||++|++...-.....+.++.|+.
T Consensus 198 ~lK~L~l~~--CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNS--CGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEecc--CCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 566666666 33333222222222444444444431 00 0 1223445555555555432211122445555555
Q ss_pred EEccCCccc
Q 044724 275 FHAYNNEIH 283 (782)
Q Consensus 275 L~l~~n~l~ 283 (782)
|+++.+.+.
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 555555443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=3.5e-11 Score=119.67 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=90.5
Q ss_pred CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcc---ccccCCc-------cccCCCCCcEEECcCCcc
Q 044724 345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENH---FVGEIPQ-------SLSKCFLLKGLYLNNNNL 414 (782)
Q Consensus 345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-------~l~~l~~L~~L~Ls~N~l 414 (782)
+.+++.+++++|.+.......+. ..+.+.++|+..++++-- ....+|+ ++..+++|++||||+|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~----~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIA----KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHH----HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 57888999999887643332222 112256677777776541 2223333 345667888888888887
Q ss_pred cccCCcc----ccCcCCCCEEeCCCCccccCCChh-------------ccCCCCCceEeccCCcceeeCCCCccccchhh
Q 044724 415 SGKIPQW----LGNLTGLQHIIMPKNHLEGPIPVE-------------FCQLDWLQILDISDNNISGSLPSCFHLLSIEQ 477 (782)
Q Consensus 415 ~~~~p~~----~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 477 (782)
....+.. +.++..|++|.|.+|.+.-.--.. ...-+.|++++.++|++.......+. ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A----~~ 180 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA----EA 180 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH----HH
Confidence 6554443 345777888888887665221111 12234566666666655422111111 23
Q ss_pred hcCCCCCCEEEcCCCcceee----cCccccCCCCCCEEEccCCcCC
Q 044724 478 INGLSGLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 478 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
|...+.|+.+.++.|.|... ....+..++.|++|||.+|-|+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 44445555565555555311 1223455555555555555554
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-10 Score=128.21 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=49.1
Q ss_pred cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC---Cchh-hhcCCCCcEE
Q 044724 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK---IPRQ-LVELNAFVVF 660 (782)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L 660 (782)
|+.+++++|.+. .++..+..+..+..|++++|++...- .+.....+..+..+.|.+... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566777777766 33355666666777777777766332 234455566666666665521 1111 3445666666
Q ss_pred EcccCcCcccCC
Q 044724 661 SFACNNLSGKIP 672 (782)
Q Consensus 661 ~ls~N~l~~~~p 672 (782)
.+.+|......+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777776665554
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.94 E-value=1.1e-09 Score=77.01 Aligned_cols=41 Identities=37% Similarity=0.830 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHhcCC-CCCCCcCCCCCCCCCCCCCcccceEec
Q 044724 22 DHERFALLQLKHFFN-DPVNYLHDWVDAKGATDCCQWANVECN 63 (782)
Q Consensus 22 ~~~~~aLl~~k~~~~-~~~~~l~~W~~~~~~~~~C~w~gv~C~ 63 (782)
++|++||++||+++. +|.+.+.+|... ...+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~-~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPS-SDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCc-CCCCCeeeccEEeC
Confidence 689999999999999 677899999863 02799999999996
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=5.9e-10 Score=104.50 Aligned_cols=124 Identities=26% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCCCCEEEccCccccccCCcccc-CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhc-cCCCCCce
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLS-KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEF-CQLDWLQI 454 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~ 454 (782)
..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|+|+.. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 33455555555555422 1233 345555666666655532 1344555666666666666532 2222 24566666
Q ss_pred EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec---CccccCCCCCCEEE
Q 044724 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV---PVQLCGLNQLQLLD 512 (782)
Q Consensus 455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~ 512 (782)
|++++|+|...-. + ..+..+++|++|+|.+|.+.... ...+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~--l-----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNE--L-----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCC--C-----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHH--h-----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666666653211 1 34555666666666666665221 11245567777765
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.7e-09 Score=83.19 Aligned_cols=60 Identities=47% Similarity=0.619 Sum_probs=34.2
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 643 (782)
+|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 355556666655544445555555555666665555555555555555555555555543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.7e-09 Score=83.30 Aligned_cols=61 Identities=34% Similarity=0.503 Sum_probs=57.2
Q ss_pred cccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724 607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667 (782)
Q Consensus 607 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 667 (782)
++|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988888999999999999999999988888999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=7e-10 Score=121.78 Aligned_cols=241 Identities=26% Similarity=0.258 Sum_probs=162.5
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
.+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|..+ ...+..+++|++|++++|.|+...+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 46677777888888774 333467778888888888888743 3336678888888888888875543 4566668888
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCccccccccccc
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHES 534 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 534 (782)
++++|.++.. ..+..+++|+.+++++|++...-+ . ...+.+++.+++++|.+...-...
T Consensus 146 ~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~--------- 205 (414)
T KOG0531|consen 146 NLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD--------- 205 (414)
T ss_pred eeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---------
Confidence 8888888743 345557888888888888874433 2 466778888888888776321110
Q ss_pred ccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccc--ccee
Q 044724 535 YNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTR--IQIL 612 (782)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L 612 (782)
.+..+..+++..|.++-.- .+..+.. |+.+
T Consensus 206 ----------------------------------------------~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l 237 (414)
T KOG0531|consen 206 ----------------------------------------------LLKKLVLLSLLDNKISKLE--GLNELVMLHLREL 237 (414)
T ss_pred ----------------------------------------------HHHHHHHhhcccccceecc--CcccchhHHHHHH
Confidence 0223445588888887432 2233333 8999
Q ss_pred ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccC---CCC-ccccCCCCcccccC
Q 044724 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKI---PEL-TAQFATFNESSYKG 688 (782)
Q Consensus 613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~---p~~-~~~~~~l~~~~~~g 688 (782)
++++|.+. .++..+..+..++.||+++|++... ..+.....+..+....|.+...- ... .....++....+.+
T Consensus 238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
T KOG0531|consen 238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL 314 (414)
T ss_pred hcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence 99999998 5556778889999999999998754 23455666777778888765321 110 23344555666666
Q ss_pred CCC
Q 044724 689 NPF 691 (782)
Q Consensus 689 Np~ 691 (782)
||.
T Consensus 315 ~~~ 317 (414)
T KOG0531|consen 315 NPI 317 (414)
T ss_pred Ccc
Confidence 663
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=7.4e-09 Score=121.31 Aligned_cols=108 Identities=24% Similarity=0.289 Sum_probs=83.2
Q ss_pred CCCCCCEEeCCCCC--CCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724 94 PFQQLESLSLSANN--IAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF 171 (782)
Q Consensus 94 ~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~ 171 (782)
..+.|++|-+..|. +... +...|..++.|++|||++|.=-+.+|..++.+.+||+|++++..++ .+|. .+
T Consensus 543 ~~~~L~tLll~~n~~~l~~i------s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI------SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GL 614 (889)
T ss_pred CCCccceEEEeecchhhhhc------CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HH
Confidence 34578888888775 3211 1223777899999999988666678999999999999999999988 8887 88
Q ss_pred cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccC
Q 044724 172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA 210 (782)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 210 (782)
.++..|.+|++..+...... |.....+++||+|.+...
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 89999999999887755443 666677889999988763
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=1.3e-08 Score=119.21 Aligned_cols=129 Identities=23% Similarity=0.282 Sum_probs=93.4
Q ss_pred CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCC--CCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724 94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNS--FNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF 171 (782)
Q Consensus 94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~ 171 (782)
.....|...+-+|.+..... =..++.|++|-+..|. +.....+.|..++.|++|||++|.=-+.+|. .+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~--------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I 591 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG--------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SI 591 (889)
T ss_pred chhheeEEEEeccchhhccC--------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HH
Confidence 34566777777776642222 2345578888888886 5545556688899999999998765557886 88
Q ss_pred cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724 172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN 236 (782)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~ 236 (782)
+.+-+|++|++++..+..+ |..++++++|.+|++.. +.....+|..... +++|++|.+..
T Consensus 592 ~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~--~~~l~~~~~i~~~-L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEV--TGRLESIPGILLE-LQSLRVLRLPR 651 (889)
T ss_pred hhhhhhhcccccCCCcccc--chHHHHHHhhheecccc--ccccccccchhhh-cccccEEEeec
Confidence 8899999999999988866 88899999999999987 4433334555555 77888777654
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=2.5e-08 Score=108.13 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=85.0
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCc-cccCCCCCCEEecCCCccccCCchhhhcCCCCcEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS-TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF 660 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 660 (782)
++.++.||||+|+++.. +.+..|+.|+.|||++|.+. .+|. ...+++ |+.|.+++|.++.. ..+.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence 77899999999999855 37899999999999999999 4453 333444 99999999999843 467899999999
Q ss_pred EcccCcCcccCCC-CccccCCCCcccccCCCCCCC
Q 044724 661 SFACNNLSGKIPE-LTAQFATFNESSYKGNPFLCG 694 (782)
Q Consensus 661 ~ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~lC~ 694 (782)
|+++|-|++--.- .+..+..+..+.++|||.-|.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999988763211 134456677889999998884
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=8.9e-09 Score=111.49 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 458 (782)
.|.+.+.++|++. .+..++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.+.....-...++. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555566666665 3344455556666666666666533 2556666666666666666643333333444 6666666
Q ss_pred CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcC
Q 044724 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNL 518 (782)
Q Consensus 459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l 518 (782)
+|.++.. ..+.++.+|+.||+++|-+.+... ..++.+..|+.|.|.+|++
T Consensus 241 nN~l~tL----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666532 235566666666666666553211 1233445566666666665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-08 Score=98.34 Aligned_cols=176 Identities=22% Similarity=0.235 Sum_probs=117.4
Q ss_pred CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc-CcCcCChhhhcCCC
Q 044724 97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR-LEGSIDVKEFDSFN 175 (782)
Q Consensus 97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~ 175 (782)
.|++||||+..|+...-. ..++.|.+|+.|.|.++.+.+.+-..+++-.+|+.|||+.+. ++..--.-.+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~-----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHH-----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 588999998877532111 126778899999999999998888889999999999998864 33111111467889
Q ss_pred CCCEEEcccCCCCCccCCCCCCC-CCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCC--C-CC----CCCCCCC
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPH-FKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF--S-PS----NDSWTLN 247 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~--i-p~----~~~l~~L 247 (782)
.|+.|+|+.|.+........+.+ -++|+.|++++++-.+...-...+...+++|.+|||++. + +. +..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 99999999988765432222222 257888899886555555555566666888998888872 2 11 5667777
Q ss_pred CeEEccCceeeeecCCC---CcCCCCCCcEEEccCC
Q 044724 248 QVLWLSNNHFRIPISPD---PLFNHSRLKIFHAYNN 280 (782)
Q Consensus 248 ~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~l~~n 280 (782)
++|.++.|-. ++++ .+...+.|.+|++.++
T Consensus 341 ~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 7777777752 2222 2345556666665543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.2e-08 Score=96.45 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=42.4
Q ss_pred CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724 175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN 236 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~ 236 (782)
+.||+|||+...|+...+-..+..|.+|+.|.+.+ +.+...+...+++ -.+|+.|+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg--~~LdD~I~~~iAk-N~~L~~lnlsm 243 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG--LRLDDPIVNTIAK-NSNLVRLNLSM 243 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc--cccCcHHHHHHhc-cccceeecccc
Confidence 35888888887776543334567778888888888 7777777777777 67777776664
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=1.4e-07 Score=81.63 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=26.7
Q ss_pred cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 344444444444 34444444444444444444444 33444444444444444444443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=3.8e-07 Score=78.92 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=63.5
Q ss_pred ccceeeccCCccCccCCcc---cccccccceeecccccccccCCcccc-CCCCCCEEecCCCccccCCchhhhcCCCCcE
Q 044724 584 LLSGIDLSCNKLIGHIPPP---IGNLTRIQILNLSHNNLTGTIPSTFS-KLEAYRNLDLSYNKLNGKIPRQLVELNAFVV 659 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 659 (782)
.+..+|||++++. .+++. +.....|+..+|++|.+. ..|..|. ..+.++.|+|++|+|+ .+|++++.++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455777777665 33433 333445556677777777 4444444 3346777777777777 56777777777777
Q ss_pred EEcccCcCcccCCCCccccCCCCcccccCCC
Q 044724 660 FSFACNNLSGKIPELTAQFATFNESSYKGNP 690 (782)
Q Consensus 660 L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp 690 (782)
+|+++|.+...+.. +.++.+|..++..+|.
T Consensus 105 lNl~~N~l~~~p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred cccccCccccchHH-HHHHHhHHHhcCCCCc
Confidence 77777777654443 4556666666555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=2.2e-06 Score=83.87 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=45.0
Q ss_pred CCCCcEEeCCCCCCCC--cchhhcCCCCCCCEEEccCCcCcCcCChhhh-cCCCCCCEEEcccCCCCCccCCCCCCCCCC
Q 044724 125 LNNLKMFDLSGNSFNN--SILSSLTRLSSVRSLKLSYNRLEGSIDVKEF-DSFNNLEVLDMKRNEIDNLVVPQGFPHFKS 201 (782)
Q Consensus 125 l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 201 (782)
+++++.|||.+|.++. .+..-+.++|+|++|+|+.|.+...|. .+ ..+.+|++|-|.+..+.-......+..++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4556666666666653 233334566666666666666653332 12 244566666666655543322344555666
Q ss_pred ccEEecccC
Q 044724 202 LEHLDMSYA 210 (782)
Q Consensus 202 L~~L~L~~n 210 (782)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 666666653
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.6e-05 Score=55.85 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=17.3
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 127 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
+|++|++++|+++. +|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555552 3334555555555555555554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=9.1e-06 Score=57.13 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=16.7
Q ss_pred ccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 608 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33334455555555555555544
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=4.5e-06 Score=95.75 Aligned_cols=129 Identities=25% Similarity=0.298 Sum_probs=83.1
Q ss_pred CCCcEEeCCCCCC-CCcchhhcC-CCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc
Q 044724 126 NNLKMFDLSGNSF-NNSILSSLT-RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE 203 (782)
Q Consensus 126 ~~L~~L~Ls~N~l-~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 203 (782)
.+|++||+++... ....|..++ .+|+|++|.+++-.+...==.....++|+|..||+|+.+++.. .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 5788888888644 223444454 4788999988886664210011456788899999998888776 5778888888
Q ss_pred EEecccCcccccc-cchHHHhhcCCCCCeEeCCCC----CC--------CCCCCCCCCeEEccCceeeee
Q 044724 204 HLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF----SP--------SNDSWTLNQVLWLSNNHFRIP 260 (782)
Q Consensus 204 ~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~----ip--------~~~~l~~L~~L~Ls~n~l~~~ 260 (782)
.|.+.+ ..+.. .....+.+ +++|+.||+|.. .+ ....+|+|+.||.|++.+...
T Consensus 199 ~L~mrn--Le~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRN--LEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccC--CCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 888887 55443 34456666 888888888761 11 022355566666665555433
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=2.8e-06 Score=82.17 Aligned_cols=218 Identities=18% Similarity=0.150 Sum_probs=107.1
Q ss_pred hcCCCCCCEEEcccCCCCCcc---CCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCC
Q 044724 171 FDSFNNLEVLDMKRNEIDNLV---VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN 247 (782)
Q Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L 247 (782)
+..+..+..+|||+|.|.... +...+.+-.+|+..+++. . ++|..-+.+.. +|+.| .|.+..|+.|
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd--~-ftgr~kde~~~---~L~~L-----l~aLlkcp~l 94 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD--A-FTGRDKDELYS---NLVML-----LKALLKCPRL 94 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh--h-hhcccHHHHHH---HHHHH-----HHHHhcCCcc
Confidence 445778888888888886532 123345556777777775 2 22322222211 01100 1223456666
Q ss_pred CeEEccCceeeeecCCC---CcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCc
Q 044724 248 QVLWLSNNHFRIPISPD---PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLR 324 (782)
Q Consensus 248 ~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 324 (782)
+..+||+|.|....|+. .++..+.|+.|.+++|.+....... +. ..|.+ +.. .....+-|.|+
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r----ig-kal~~--la~-------nKKaa~kp~Le 160 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR----IG-KALFH--LAY-------NKKAADKPKLE 160 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhH----HH-HHHHH--HHH-------HhhhccCCCce
Confidence 67777777665444431 2344455666666665542110000 00 00000 000 01123446778
Q ss_pred EEEccCCcCCccCChhhhh----cCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccC----Cc
Q 044724 325 LLDVSNNNFQGCIPVEIGD----ILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI----PQ 396 (782)
Q Consensus 325 ~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~----~~ 396 (782)
..+...|++. ..|..... .-.+|+.+.+..|.+. |......++..+..+.+|+.||+.+|.++-.- ..
T Consensus 161 ~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 161 VVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred EEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 8888888776 44443221 1236777777777654 33222222222335667777777777665322 22
Q ss_pred cccCCCCCcEEECcCCccccc
Q 044724 397 SLSKCFLLKGLYLNNNNLSGK 417 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~ 417 (782)
++..++.|+.|.+.+|-++..
T Consensus 237 al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred Hhcccchhhhccccchhhccc
Confidence 344455566666666666543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=7.2e-05 Score=79.10 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=49.2
Q ss_pred ccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCc
Q 044724 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPV 500 (782)
Q Consensus 422 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 500 (782)
+..+.++++|++++|.++. +|. -.++|+.|.++++.--..+|. .+ .++|++|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~--------~L--P~nLe~L~Ls~Cs~L~-sLP- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPG--------SI--PEGLEKLTVCHCPEIS-GLP- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCc--------hh--hhhhhheEccCccccc-ccc-
Confidence 4556888899999888773 452 224688888887544345562 22 257888888888 444 344
Q ss_pred cccCCCCCCEEEccCCcC
Q 044724 501 QLCGLNQLQLLDLSDNNL 518 (782)
Q Consensus 501 ~~~~l~~L~~L~Ls~N~l 518 (782)
.+|+.|+++.+..
T Consensus 112 -----~sLe~L~L~~n~~ 124 (426)
T PRK15386 112 -----ESVRSLEIKGSAT 124 (426)
T ss_pred -----cccceEEeCCCCC
Confidence 3577777776554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=4.7e-06 Score=81.66 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=69.6
Q ss_pred cCCCCCcEEeCCCCCCCCcc-hhhc-CCCCCCCEEEccCCcCcC--cCChhhhcCCCCCCEEEcccCCCCCccCCCCC-C
Q 044724 123 TRLNNLKMFDLSGNSFNNSI-LSSL-TRLSSVRSLKLSYNRLEG--SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGF-P 197 (782)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~-~~~~-~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~ 197 (782)
+.+..++.|-+.++.+.... ...| ..++.++.|||.+|.++. .|.. .+.++|.|++|+|+.|.+...+ ..+ .
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I--~~lp~ 118 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDI--KSLPL 118 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCcc--ccCcc
Confidence 34445666667666664321 1223 357899999999999972 2222 4679999999999999998764 344 4
Q ss_pred CCCCccEEecccCcccccccchHHHhhcCCCCCeEeCC
Q 044724 198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS 235 (782)
Q Consensus 198 ~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~ 235 (782)
.+.+|+.|-|.+ ..+.-.-...+...+|.+++|.++
T Consensus 119 p~~nl~~lVLNg--T~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 119 PLKNLRVLVLNG--TGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred cccceEEEEEcC--CCCChhhhhhhhhcchhhhhhhhc
Confidence 678999999988 444333333333325555555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=8.8e-05 Score=78.45 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCC
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 436 (782)
.+.+++.|++++|.++ .+| .+ ..+|++|.++++.--..+|..+. ++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 4567777777777666 334 11 23577777766433234444332 35666666655
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.67 E-value=1e-05 Score=78.36 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=43.8
Q ss_pred hccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceee----cCcc---------ccCCCCCCEE
Q 044724 445 EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE----VPVQ---------LCGLNQLQLL 511 (782)
Q Consensus 445 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~---------~~~l~~L~~L 511 (782)
.+..||.|+..+||.|.+....|..+. +.++.-+.|.+|.|++|.+.-. +..+ ..+-|.|++.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~----d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELG----DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHH----HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 345677777777777777666664433 4556667777777777765311 1111 2234677888
Q ss_pred EccCCcCC
Q 044724 512 DLSDNNLH 519 (782)
Q Consensus 512 ~Ls~N~l~ 519 (782)
+...|++.
T Consensus 163 icgrNRle 170 (388)
T COG5238 163 ICGRNRLE 170 (388)
T ss_pred Eeccchhc
Confidence 88888775
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=6.9e-05 Score=69.82 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF 174 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 174 (782)
..+...+||++|++... + .|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|++|.+..--....+..+
T Consensus 41 ~d~~d~iDLtdNdl~~l-~-------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-D-------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccchhhc-c-------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC
Confidence 44566778888877422 1 166777788888888888766665555567788888888776521111235667
Q ss_pred CCCCEEEcccCCCCCccC--CCCCCCCCCccEEeccc
Q 044724 175 NNLEVLDMKRNEIDNLVV--PQGFPHFKSLEHLDMSY 209 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~L~~ 209 (782)
|+|++|.+-+|.++...- --.+..+++|+.||...
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777777777776654320 12345566666666665
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=8.5e-05 Score=69.23 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=76.7
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccE
Q 044724 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH 204 (782)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 204 (782)
+.+...+||++|.+.. ...|..+++|.+|.|++|+|+ .|.+.--..+++|+.|.|.+|+|..+.--.-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3467788999998864 356788889999999999998 6766444556789999999998876543456778889999
Q ss_pred EecccCcccccccch-HHHhhcCCCCCeEeCCC
Q 044724 205 LDMSYAHIALNTNFL-QIIGESMPSLKHLSLSN 236 (782)
Q Consensus 205 L~L~~n~~~~~~~~~-~~l~~~l~~L~~L~L~~ 236 (782)
|.+-+|...-....- ..+.. +++|+.||.+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~k-lp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYK-LPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEe-cCcceEeehhh
Confidence 988885332111111 12233 88899998876
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.21 E-value=1.1e-05 Score=82.85 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=89.1
Q ss_pred CCCCCcEEEccCCc-CCccCChhhhhcCCCCcEEEcccCcC-cccCCCcccccccccCCCCCCCCEEEccCcccccc--C
Q 044724 319 SHKSLRLLDVSNNN-FQGCIPVEIGDILPSLSCFNISMNAL-DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE--I 394 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~--~ 394 (782)
.+..|+.|+.+++. ++..+-..+++..++|+.|.++.++- +..--..++ .+++.|+.+++..+..... +
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhcccccceehhhhH
Confidence 45677777777763 33333345555677888888877763 211111111 1577788888877754322 2
Q ss_pred CccccCCCCCcEEECcCCcccccC-----CccccCcCCCCEEeCCCCccc-cCCChhccCCCCCceEeccCCcceeeCCC
Q 044724 395 PQSLSKCFLLKGLYLNNNNLSGKI-----PQWLGNLTGLQHIIMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPS 468 (782)
Q Consensus 395 ~~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 468 (782)
...-.+++.|+.+.++++...... ...-..+..|+.+.++++... ...-..+..+++|+.+++-+++--..-+.
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 222245778888888877543111 112234567888888887643 33444566778888888877754322221
Q ss_pred CccccchhhhcCCCCCCEEEc
Q 044724 469 CFHLLSIEQINGLSGLSHLIL 489 (782)
Q Consensus 469 ~~~~~~~~~~~~l~~L~~L~L 489 (782)
. ..-.+++++++.-+
T Consensus 445 ~------~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 445 S------RFATHLPNIKVHAY 459 (483)
T ss_pred H------HHHhhCccceehhh
Confidence 0 22345677766544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00021 Score=82.30 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=83.6
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCC-cchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN-SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS 173 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 173 (782)
-.+|++||+++...-.. +.....-..||.|+.|.+++-.+.. ..-....++++|+.||+|+.+++ .+ ..+++
T Consensus 121 r~nL~~LdI~G~~~~s~----~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN----GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhc----cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhc
Confidence 35788888877543211 1111123357888888888766643 23344567888888888888887 55 26788
Q ss_pred CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHH---HhhcCCCCCeEeCCC
Q 044724 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQI---IGESMPSLKHLSLSN 236 (782)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~---l~~~l~~L~~L~L~~ 236 (782)
+++||.|.+.+=.+.....-..+.+|++|+.||+|.........+... -+..+|+|+.||.|+
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888888888776665421123566788888888887433322222221 122378888888887
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.20 E-value=1.6e-05 Score=81.81 Aligned_cols=178 Identities=14% Similarity=0.094 Sum_probs=108.2
Q ss_pred CCCCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCccc-CCCcccccccccCCCCCCCCEEEccCcc-ccccCCc
Q 044724 320 HKSLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGS-IPSSFEGHMFSKNFNLTNVRWLLLEENH-FVGEIPQ 396 (782)
Q Consensus 320 ~~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~g~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 396 (782)
+..+.++++.++ .+++.--..+...+..|+.|+.+++...+. .-.+++. +..+|++|.++.++ ++..-..
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhh
Confidence 445566666565 344332233444467899999988764322 1122221 67899999999886 3332222
Q ss_pred cc-cCCCCCcEEECcCCcccc--cCCccccCcCCCCEEeCCCCccccCC-----ChhccCCCCCceEeccCCcceeeCCC
Q 044724 397 SL-SKCFLLKGLYLNNNNLSG--KIPQWLGNLTGLQHIIMPKNHLEGPI-----PVEFCQLDWLQILDISDNNISGSLPS 468 (782)
Q Consensus 397 ~l-~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~ 468 (782)
.+ .+++.|+.+++.++...- .+...-.+++.|+.+.++++...... ...-+.+..|+.+.+++++....--
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~- 418 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT- 418 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-
Confidence 23 356789999998876531 12222356899999999988643221 2223456789999999998652211
Q ss_pred CccccchhhhcCCCCCCEEEcCCCcce--eecCccccCCCCCCEE
Q 044724 469 CFHLLSIEQINGLSGLSHLILAHNNLE--GEVPVQLCGLNQLQLL 511 (782)
Q Consensus 469 ~~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L 511 (782)
+ +.+..+++|+.+++-+++-. ..+...-.+++++++.
T Consensus 419 -L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 419 -L-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred -H-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 1 56778899999999887632 1222333456666554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.0012 Score=59.38 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445555555553 344444455555656666666553 4434444555555566666644 3333344455556666666
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCC
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL 508 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 508 (782)
++..+ +...-. ..|.++ +|+.+.+.. .+.......|.++++|
T Consensus 87 ~~~~~-~~~i~~--------~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGS--------SSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHT--------TTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc-ccEEch--------hhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66544 332222 334444 566666554 3332444455555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00025 Score=69.19 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=32.1
Q ss_pred cCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCC--CCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724 93 TPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN--SFNNSILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
..+..|+.|++.+..++... .|-.|++|++|++|.| ++.+.++.....+++|++|+++.|++.
T Consensus 40 d~~~~le~ls~~n~gltt~~--------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeecc--------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34555555555555544221 1444556666666666 444334333444456666666666554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0014 Score=58.89 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
|.++++|+.+.+.. .+. .++...+..+++|+.+.+..+ +.......|. ++++++.+.+.+ .+......
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--------~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--------NCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--------T-TT-EEEEETS-TT-EE-TT
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeee--------cccccccccccc-cccccccc
Confidence 44455566666553 343 444444444445555555443 3322222333 344455555543 22223333
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCC
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 452 (782)
.|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 4444555555555433 332333344444 455544443 2222333444444433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00021 Score=69.66 Aligned_cols=110 Identities=23% Similarity=0.394 Sum_probs=63.0
Q ss_pred CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCC--cCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCC
Q 044724 124 RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYN--RLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKS 201 (782)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 201 (782)
.+..|+.|++.+..++. -..|..+++|++|.+|.| ++.+.++. ....+++|++|++++|++..+.--..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34556666666655553 244666777888888888 55555554 44556788888888887764322234556677
Q ss_pred ccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724 202 LEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN 236 (782)
Q Consensus 202 L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~ 236 (782)
|..|++..|...--...-..++.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77777776321111111122222267777776543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00023 Score=69.44 Aligned_cols=64 Identities=33% Similarity=0.326 Sum_probs=30.6
Q ss_pred ccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCCCEEEccCCcCc
Q 044724 92 FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS-ILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
..+++.|++|.||-|+|+..-| +..|++|+.|.|..|.|... -...+.++++|+.|-|..|.-.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeeccccccchh--------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 3455555555555555543322 44555555555555555431 1123444555555555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00042 Score=67.70 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
+.+.+.|+.-++.++.+.- ..+++.|++|.||-|.|+. ...|..|++|+.|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHHHH--------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc
Confidence 3444555555555432210 3345555555555555543 223444555555555555444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0047 Score=36.04 Aligned_cols=12 Identities=50% Similarity=0.528 Sum_probs=5.1
Q ss_pred CCEEecCCCccc
Q 044724 633 YRNLDLSYNKLN 644 (782)
Q Consensus 633 L~~LdLs~N~l~ 644 (782)
|+.|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0057 Score=35.67 Aligned_cols=20 Identities=60% Similarity=0.928 Sum_probs=10.4
Q ss_pred cceeecccccccccCCccccC
Q 044724 609 IQILNLSHNNLTGTIPSTFSK 629 (782)
Q Consensus 609 L~~L~Ls~N~l~~~~p~~~~~ 629 (782)
|++|||++|+|+ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 44444443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.81 E-value=0.00053 Score=75.57 Aligned_cols=191 Identities=22% Similarity=0.199 Sum_probs=102.9
Q ss_pred CcEEEccCCcCCccCChhhhhc---CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc----CC
Q 044724 323 LRLLDVSNNNFQGCIPVEIGDI---LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE----IP 395 (782)
Q Consensus 323 L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~----~~ 395 (782)
+..|++.+|.+.......+... .+.|+.|+++.|.+.+..-..+...++. .-..+++|++..|.+++. +.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~---~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRL---PQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhccc---chHHHHHHHhhcccccccchHHHH
Confidence 5566666666654433333322 3456666666666652211111111100 114455566666666543 23
Q ss_pred ccccCCCCCcEEECcCCcccc----cCCcccc----CcCCCCEEeCCCCccccC----CChhccCCCC-CceEeccCCcc
Q 044724 396 QSLSKCFLLKGLYLNNNNLSG----KIPQWLG----NLTGLQHIIMPKNHLEGP----IPVEFCQLDW-LQILDISDNNI 462 (782)
Q Consensus 396 ~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~-L~~L~Ls~N~l 462 (782)
..+.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. ....+...+. +..+++..|++
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 444556667777777776631 1222222 356777777777776522 1122334444 66688888877
Q ss_pred eeeCCCCccccchhhhcCC-CCCCEEEcCCCcceeecC----ccccCCCCCCEEEccCCcCCC
Q 044724 463 SGSLPSCFHLLSIEQINGL-SGLSHLILAHNNLEGEVP----VQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 463 ~~~~p~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
.+..-.... ..+..+ ..+++++++.|.|+.... ..+..++.++++.++.|++..
T Consensus 246 ~d~g~~~L~----~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLL----PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHH----HHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 643110000 233444 667888888888875433 344566788888888888764
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.26 E-value=0.0065 Score=58.09 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=71.1
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
....+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++.+|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345778999999887 34556788888999999999998 78888999999999999988888 7888999999999999
Q ss_pred cccCcCc
Q 044724 662 FACNNLS 668 (782)
Q Consensus 662 ls~N~l~ 668 (782)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888764
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.10 E-value=0.098 Score=28.23 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=3.9
Q ss_pred CCCEEEccCCcC
Q 044724 151 SVRSLKLSYNRL 162 (782)
Q Consensus 151 ~L~~L~Ls~n~l 162 (782)
+|++|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.93 E-value=0.16 Score=30.92 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCEEEccCCcCcCcCChhhh
Q 044724 150 SSVRSLKLSYNRLEGSIDVKEF 171 (782)
Q Consensus 150 ~~L~~L~Ls~n~l~~~ip~~~~ 171 (782)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665444
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.93 E-value=0.16 Score=30.92 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCEEEccCCcCcCcCChhhh
Q 044724 150 SSVRSLKLSYNRLEGSIDVKEF 171 (782)
Q Consensus 150 ~~L~~L~Ls~n~l~~~ip~~~~ 171 (782)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.16 E-value=0.13 Score=27.76 Aligned_cols=11 Identities=64% Similarity=0.884 Sum_probs=3.6
Q ss_pred CCEEecCCCcc
Q 044724 633 YRNLDLSYNKL 643 (782)
Q Consensus 633 L~~LdLs~N~l 643 (782)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.34 E-value=0.0098 Score=56.92 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=75.7
Q ss_pred cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCC
Q 044724 601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFAT 680 (782)
Q Consensus 601 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 680 (782)
..+......+.||++.|++. -.-..|+-++.|+.||+|.|++. ..|..+..+..+..+++..|+++...-+ +++.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS-QKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc-ccccCC
Confidence 45667788999999999998 44566888999999999999998 7899999999999999999998865444 888899
Q ss_pred CCcccccCCCCC
Q 044724 681 FNESSYKGNPFL 692 (782)
Q Consensus 681 l~~~~~~gNp~l 692 (782)
....+..+||+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999864
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.71 E-value=0.091 Score=59.19 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCCCCCEEEccCCc-CcCcCChhhhc-CCCCCCEEEcccCC-CCCccCCCCCCCCCCccEEeccc
Q 044724 148 RLSSVRSLKLSYNR-LEGSIDVKEFD-SFNNLEVLDMKRNE-IDNLVVPQGFPHFKSLEHLDMSY 209 (782)
Q Consensus 148 ~l~~L~~L~Ls~n~-l~~~ip~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~ 209 (782)
.+.+|+.|+++++. ++ ..-...+. .+++|++|.+.++. ++...+-.....+++|++|++++
T Consensus 241 ~~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred hcCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 34555555555554 22 11111121 24555555544444 33322122233444555555554
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=89.62 E-value=0.2 Score=64.67 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=19.1
Q ss_pred cccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
|++|+|+...+..+..+.+++.+++.||||.|+|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 344444444343344444455555567777777754
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.47 E-value=0.4 Score=29.08 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=8.6
Q ss_pred CCCCEEecCCCccc
Q 044724 631 EAYRNLDLSYNKLN 644 (782)
Q Consensus 631 ~~L~~LdLs~N~l~ 644 (782)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.47 E-value=0.4 Score=29.08 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=8.6
Q ss_pred CCCCEEecCCCccc
Q 044724 631 EAYRNLDLSYNKLN 644 (782)
Q Consensus 631 ~~L~~LdLs~N~l~ 644 (782)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.93 E-value=0.0089 Score=66.02 Aligned_cols=191 Identities=20% Similarity=0.144 Sum_probs=106.3
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhcC----CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc--
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDIL----PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG-- 392 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l----~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~-- 392 (782)
..+.|+.|++++|.+.+.--..+.+.+ ..++.|++..|.+++..-.. +...+.....++.++++.|.+..
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~----l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP----LAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH----HHHHHhcccchhHHHHHhcccchhh
Confidence 445666677777766533222222222 23455666666665432221 11222245667777777776631
Q ss_pred --cCCcccc----CCCCCcEEECcCCcccccC----CccccCcCC-CCEEeCCCCccccC----CChhccCC-CCCceEe
Q 044724 393 --EIPQSLS----KCFLLKGLYLNNNNLSGKI----PQWLGNLTG-LQHIIMPKNHLEGP----IPVEFCQL-DWLQILD 456 (782)
Q Consensus 393 --~~~~~l~----~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~ 456 (782)
.++..+. ...++++|.+++|.++... ...+...+. +..+++..|++.+. ....+..+ ..++.++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 1222333 4667888888888876321 122344444 66688888887644 22334444 6778999
Q ss_pred ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC----ccccCCCCCCEEEccCCc
Q 044724 457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP----VQLCGLNQLQLLDLSDNN 517 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~ 517 (782)
++.|.++..-..... ..+..++.++++.+++|.+..... ........+..+-+.++.
T Consensus 269 l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred hhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 999998865443222 445667789999999998764321 112233445555555443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.73 E-value=0.17 Score=30.05 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=8.0
Q ss_pred CCCCEEecCCCccccCC
Q 044724 631 EAYRNLDLSYNKLNGKI 647 (782)
Q Consensus 631 ~~L~~LdLs~N~l~~~i 647 (782)
++|++|+|++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555666666555433
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.38 E-value=0.51 Score=53.07 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCCCccEEecccCccc-ccccchHHHhhcCCCCCeEeCCCCC--CC------CCCCCCCCeEEccCce
Q 044724 198 HFKSLEHLDMSYAHIA-LNTNFLQIIGESMPSLKHLSLSNFS--PS------NDSWTLNQVLWLSNNH 256 (782)
Q Consensus 198 ~l~~L~~L~L~~n~~~-~~~~~~~~l~~~l~~L~~L~L~~~i--p~------~~~l~~L~~L~Ls~n~ 256 (782)
.+++|+.|++++ .. ++......+...+++|++|.+.... .. ...++.|+.|+++.+.
T Consensus 241 ~~~~L~~l~l~~--~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSG--CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhh--hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345555555555 22 3333334444445555555544311 11 2345556666666554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=0.24 Score=46.93 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=48.1
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhc-CCCCCCEEEcccCC-CCCccCCCCCCCCCCccE
Q 044724 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFD-SFNNLEVLDMKRNE-IDNLVVPQGFPHFKSLEH 204 (782)
Q Consensus 127 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~ 204 (782)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.--+.--.+.++ -.++|+.|++++|. |+... -..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence 3566777777776666666777777777777777522111000111 24677777777764 44433 345556666666
Q ss_pred Eeccc
Q 044724 205 LDMSY 209 (782)
Q Consensus 205 L~L~~ 209 (782)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.82 E-value=2.5 Score=25.71 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=10.3
Q ss_pred CCCCCEEecCCCccc
Q 044724 630 LEAYRNLDLSYNKLN 644 (782)
Q Consensus 630 l~~L~~LdLs~N~l~ 644 (782)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.71 E-value=3.6 Score=24.95 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=7.2
Q ss_pred CCCEEecCCCccc
Q 044724 632 AYRNLDLSYNKLN 644 (782)
Q Consensus 632 ~L~~LdLs~N~l~ 644 (782)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.60 E-value=0.92 Score=43.09 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=55.7
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCC-cccc-CCCCCCEEecCCC-ccccCCchhhhcCCCCcEE
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP-STFS-KLEAYRNLDLSYN-KLNGKIPRQLVELNAFVVF 660 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~-~l~~L~~LdLs~N-~l~~~ip~~l~~l~~L~~L 660 (782)
.++.+|-++..|..+--+.+.+++.++.|.+.++.--+..- +-++ -.++|+.|+|++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 36788999998887666778888888888888875432100 0111 3478999999988 6776555667777777776
Q ss_pred Eccc
Q 044724 661 SFAC 664 (782)
Q Consensus 661 ~ls~ 664 (782)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6644
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.50 E-value=3.6 Score=45.14 Aligned_cols=13 Identities=46% Similarity=0.948 Sum_probs=7.7
Q ss_pred CCcccccCCCCCCC
Q 044724 681 FNESSYKGNPFLCG 694 (782)
Q Consensus 681 l~~~~~~gNp~lC~ 694 (782)
++++-+.||| +|.
T Consensus 272 Leel~l~GNP-lc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNP-LCT 284 (585)
T ss_pred HHHeeecCCc-ccc
Confidence 4556667777 553
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.37 E-value=6.5 Score=24.32 Aligned_cols=14 Identities=57% Similarity=0.741 Sum_probs=9.8
Q ss_pred CCCCEEecCCCccc
Q 044724 631 EAYRNLDLSYNKLN 644 (782)
Q Consensus 631 ~~L~~LdLs~N~l~ 644 (782)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777775
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.72 E-value=23 Score=38.45 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc
Q 044724 320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS 399 (782)
Q Consensus 320 ~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 399 (782)
-+.++++|++.|.+....|..+.. + ---+.++.|.++...-..+. ..- .-..+.+++++.|.....+|....
T Consensus 164 npr~r~~dls~npi~dkvpihl~~--p-~~pl~lr~c~lsskfis~l~----~qs-g~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQ--P-GNPLSLRVCELSSKFISKLL----IQS-GRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cchhhhhccCCCcccccCCccccC--C-CCccchhhhhhhhhHHHHhh----hhh-ccccccccccccCCCCccchhHHH
Confidence 356788999999888777766543 1 11266666666532211110 000 123577788888877777765432
Q ss_pred C---CCCCcEEECcCCcccc---cCCccccCcCCCCEEeCCCCcc
Q 044724 400 K---CFLLKGLYLNNNNLSG---KIPQWLGNLTGLQHIIMPKNHL 438 (782)
Q Consensus 400 ~---l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~L~~N~l 438 (782)
. -..++.++.+...+.- .-+-.++.-++++..+++.|..
T Consensus 236 ~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 236 KKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred HhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 2 2345666666554431 1122234455677777766643
No 93
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=51.11 E-value=13 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=10.0
Q ss_pred eeeeeehhhHHHHHHHhhhhhccccchh
Q 044724 725 FFITFTISYIILIFGIIIVLYVNPYWRR 752 (782)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (782)
+..+.++-++++++++.++++ .||||
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~--~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLF--FWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhh--eEEec
Confidence 334444443333333333333 34444
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=41.74 E-value=15 Score=32.99 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=10.3
Q ss_pred HHHHHHHhhhhhccccchhh
Q 044724 734 IILIFGIIIVLYVNPYWRRR 753 (782)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~ 753 (782)
++++++++++++++++||.+
T Consensus 69 vlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHheeEEeecccC
Confidence 33444445555555666554
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.86 E-value=25 Score=38.93 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.1
Q ss_pred CCCCCCEEEccCcccc
Q 044724 376 NLTNVRWLLLEENHFV 391 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~ 391 (782)
+.+.+..+.|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 3444555555555543
No 96
>COG4323 Predicted membrane protein [Function unknown]
Probab=28.72 E-value=81 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhheeeeEEEeceeccccc
Q 044724 752 RRWFYLVEMWIASCYYFVVDNLIPKRFC 779 (782)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (782)
.--...+...++|+.|++.++..|--|.
T Consensus 55 llAapv~GYgFAWvGHFvFEKNRPATFk 82 (105)
T COG4323 55 LLAAPVIGYGFAWVGHFVFEKNRPATFK 82 (105)
T ss_pred HHHhhhhcccceeeeeeeeecCCCcccc
Confidence 3344567778999999999888665554
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.49 E-value=34 Score=45.57 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=26.4
Q ss_pred eccCCccCccCCcccccccccceeeccccccc
Q 044724 589 DLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT 620 (782)
Q Consensus 589 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 620 (782)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68888888777777888888888888888776
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.01 E-value=21 Score=31.31 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=5.8
Q ss_pred hhHHHHHHHhhhhhc
Q 044724 732 SYIILIFGIIIVLYV 746 (782)
Q Consensus 732 ~~~~~~~~~~~~~~~ 746 (782)
++++++++++++++|
T Consensus 72 gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 72 GVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334443443333
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.03 E-value=48 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.9
Q ss_pred CCCCEEEccCCc
Q 044724 150 SSVRSLKLSYNR 161 (782)
Q Consensus 150 ~~L~~L~Ls~n~ 161 (782)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555543
No 100
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=24.19 E-value=30 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=19.9
Q ss_pred ehhhHHHHHHHhhhhhccccchhhHHHHHHH
Q 044724 730 TISYIILIFGIIIVLYVNPYWRRRWFYLVEM 760 (782)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (782)
.+++.+++++.++.+++.+|.|++++..-|+
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 3445555566666677777778877765554
No 101
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.16 E-value=55 Score=31.54 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=11.5
Q ss_pred ccceeeeeehhhHHHHHHHhhhhhc
Q 044724 722 TGNFFITFTISYIILIFGIIIVLYV 746 (782)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (782)
...+.++++.|++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3445555555544444444444433
Done!