Query 044724
Match_columns 782
No_of_seqs 847 out of 4996
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.2E-82 2.4E-86 748.6 51.3 653 17-704 6-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-62 3.5E-67 584.3 40.2 572 91-693 72-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-58 1.9E-62 538.8 49.5 575 66-697 24-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-57 1.1E-61 542.8 40.6 528 55-697 14-565 (844)
5 3t6q_A CD180 antigen; protein- 100.0 8.6E-56 2.9E-60 513.2 37.7 499 91-696 52-564 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-54 1.6E-58 505.4 44.7 540 96-692 25-597 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-54 4E-59 503.7 35.2 508 96-698 32-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.7E-53 5.7E-58 494.0 44.0 503 67-673 33-565 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 7.3E-53 2.5E-57 495.5 34.3 497 17-696 263-870 (876)
10 4eco_A Uncharacterized protein 100.0 3.8E-53 1.3E-57 490.7 31.2 517 19-696 26-630 (636)
11 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-49 1.9E-53 456.0 38.6 479 126-692 32-534 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-49 3.9E-54 456.2 30.3 406 54-519 3-423 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-48 8.1E-53 465.8 37.2 491 95-694 23-541 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 4.6E-48 1.6E-52 445.1 37.1 492 96-698 28-537 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 2.7E-48 9.4E-53 447.0 33.4 497 66-673 27-536 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-47 1.9E-51 442.0 36.2 508 97-697 53-585 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.3E-47 1.1E-51 432.6 22.8 438 96-670 21-483 (520)
18 4eco_A Uncharacterized protein 100.0 4E-47 1.4E-51 440.3 22.5 470 96-695 81-603 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-46 2.6E-50 424.5 31.0 411 55-520 12-445 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-46 1.5E-50 423.3 22.1 456 99-697 3-486 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 6.4E-44 2.2E-48 419.6 26.5 310 314-693 508-841 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-43 1.1E-47 403.0 23.3 459 70-672 34-514 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-42 3.8E-47 398.6 22.7 459 95-697 30-515 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-39 9E-44 377.1 39.2 468 126-693 52-556 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 9.9E-39 3.4E-43 356.5 33.0 374 96-524 30-413 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 3.1E-39 1.1E-43 357.7 26.0 405 94-694 9-431 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 1.8E-39 6.1E-44 359.7 23.7 387 124-693 9-410 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 2.9E-39 1E-43 360.8 25.3 374 248-696 13-412 (455)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-39 3.8E-44 344.2 20.0 151 18-209 1-158 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 7E-37 2.4E-41 339.2 24.7 355 92-673 38-392 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-36 1.4E-40 332.9 28.1 312 67-520 42-353 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.4E-41 339.0 26.6 327 299-696 34-360 (477)
33 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-37 2.2E-41 323.1 20.0 260 378-701 50-313 (313)
34 2id5_A Lingo-1, leucine rich r 100.0 2E-36 6.7E-41 339.8 24.5 307 321-697 32-338 (477)
35 1o6v_A Internalin A; bacterial 100.0 4E-35 1.4E-39 327.7 31.5 302 94-520 44-345 (466)
36 1o6v_A Internalin A; bacterial 100.0 7.1E-35 2.4E-39 325.7 32.4 345 67-521 46-390 (466)
37 3o6n_A APL1; leucine-rich repe 100.0 2.4E-33 8.4E-38 306.0 26.5 177 317-523 89-265 (390)
38 3oja_B Anopheles plasmodium-re 100.0 4.2E-33 1.4E-37 320.9 26.3 335 244-696 50-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.4E-33 8.1E-38 306.1 22.7 293 317-697 65-357 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.5E-33 1.6E-37 320.6 22.9 293 316-696 70-362 (597)
41 4fmz_A Internalin; leucine ric 100.0 2.5E-31 8.6E-36 285.3 27.3 263 317-668 84-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 4.3E-31 1.5E-35 283.5 28.3 284 317-691 62-345 (347)
43 1xku_A Decorin; proteoglycan, 100.0 5.3E-31 1.8E-35 280.6 26.5 288 322-689 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-31 1.2E-35 282.1 24.1 288 322-690 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-30 6.2E-35 276.6 25.7 268 321-666 54-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5.1E-30 1.7E-34 272.9 28.8 269 321-666 52-330 (330)
47 4fcg_A Uncharacterized protein 100.0 8E-32 2.7E-36 285.8 12.9 143 17-190 21-165 (328)
48 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-34 2.6E-38 317.5 -4.5 119 317-439 109-240 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 3E-33 1E-37 312.7 -3.2 195 320-522 141-357 (461)
50 3zyj_A Leucine-rich repeat-con 100.0 4.7E-29 1.6E-33 276.4 23.8 247 348-668 45-292 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 5.3E-29 1.8E-33 277.0 23.8 247 348-668 56-303 (452)
52 2z80_A TOLL-like receptor 2, v 100.0 1E-29 3.5E-34 273.2 16.7 280 320-673 30-319 (353)
53 2z66_A Variable lymphocyte rec 100.0 4.3E-29 1.5E-33 262.8 19.8 250 349-670 10-263 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.7E-34 272.3 15.6 281 345-696 30-318 (353)
55 2z66_A Variable lymphocyte rec 100.0 5.1E-29 1.8E-33 262.2 18.2 276 324-673 10-292 (306)
56 4fcg_A Uncharacterized protein 100.0 9.6E-29 3.3E-33 262.0 19.5 234 377-668 80-314 (328)
57 3zyi_A Leucine-rich repeat-con 100.0 1.8E-27 6.2E-32 264.6 25.0 250 322-645 55-304 (452)
58 3zyj_A Leucine-rich repeat-con 100.0 3.4E-27 1.2E-31 261.4 25.9 248 323-644 45-292 (440)
59 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-28 1.6E-32 252.1 17.8 209 403-672 33-242 (285)
60 1ozn_A Reticulon 4 receptor; N 100.0 7.2E-28 2.5E-32 250.6 18.1 253 324-674 14-267 (285)
61 3ogk_B Coronatine-insensitive 99.9 2E-30 6.8E-35 299.4 -5.0 291 53-410 40-350 (592)
62 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-29 1.6E-33 263.5 4.3 268 322-673 11-281 (317)
63 3ogk_B Coronatine-insensitive 99.9 6.9E-30 2.4E-34 294.9 -2.6 289 318-670 217-528 (592)
64 1wwl_A Monocyte differentiatio 99.9 1.6E-28 5.4E-33 258.9 7.1 191 319-522 41-244 (312)
65 1wwl_A Monocyte differentiatio 99.9 5.9E-29 2E-33 262.2 3.6 248 345-670 42-311 (312)
66 3oja_A Leucine-rich immune mol 99.9 3.7E-28 1.3E-32 271.6 9.5 245 378-696 34-286 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 6.1E-29 2.1E-33 262.7 2.3 272 348-701 12-284 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3E-25 1E-29 252.9 26.8 247 321-678 61-307 (622)
69 3oja_A Leucine-rich immune mol 99.9 6.1E-27 2.1E-31 261.7 10.7 234 347-663 35-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4.1E-30 232.6 19.1 227 382-673 11-242 (276)
71 2p1m_B Transport inhibitor res 99.9 2.5E-29 8.5E-34 290.4 -12.3 473 53-643 33-543 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 4.9E-25 1.7E-29 228.0 20.6 208 427-696 29-241 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-24 8.1E-29 245.5 27.3 259 321-693 40-298 (622)
74 2o6q_A Variable lymphocyte rec 99.9 1.3E-24 4.6E-29 223.8 20.8 204 403-670 17-220 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.6E-29 224.1 20.4 113 583-696 100-212 (290)
76 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 216.0 21.8 112 584-695 110-221 (270)
77 2p1m_B Transport inhibitor res 99.9 2.2E-27 7.4E-32 274.1 -8.3 285 320-668 210-519 (594)
78 3rfs_A Internalin B, repeat mo 99.9 2.5E-24 8.4E-29 222.0 14.5 222 381-676 22-243 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.1E-23 1.1E-27 215.5 20.4 178 427-669 32-209 (290)
80 3rfs_A Internalin B, repeat mo 99.9 4.7E-24 1.6E-28 219.9 13.1 207 377-655 40-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 7.5E-25 2.6E-29 235.9 3.6 266 325-651 2-304 (362)
82 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 234.5 3.5 260 350-670 2-299 (362)
83 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.1E-28 221.4 9.6 81 583-668 224-307 (310)
84 4glp_A Monocyte differentiatio 99.9 2.1E-23 7.1E-28 219.5 11.2 142 378-526 91-244 (310)
85 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 205.7 17.2 182 428-673 16-197 (251)
86 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.6E-29 235.6 0.5 91 582-672 215-320 (386)
87 2xwt_C Thyrotropin receptor; s 99.9 3.3E-22 1.1E-26 201.9 15.4 56 607-665 179-236 (239)
88 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.4E-29 234.7 -0.7 250 336-648 23-320 (386)
89 2ast_B S-phase kinase-associat 99.9 9.8E-24 3.3E-28 225.0 4.1 253 323-675 49-313 (336)
90 3m19_A Variable lymphocyte rec 99.9 6.9E-22 2.3E-26 201.1 17.5 181 450-694 14-194 (251)
91 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.5E-28 223.4 5.4 255 298-629 48-315 (336)
92 2xwt_C Thyrotropin receptor; s 99.9 6.5E-22 2.2E-26 199.8 15.9 196 379-641 32-236 (239)
93 1h6u_A Internalin H; cell adhe 99.9 7E-22 2.4E-26 207.3 16.4 192 401-669 40-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.7E-26 203.1 15.4 192 377-645 40-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 6E-21 2.1E-25 214.7 14.6 188 379-655 60-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 4.4E-20 1.5E-24 197.6 18.7 171 324-515 12-186 (350)
97 4ay9_X Follicle-stimulating ho 99.8 2.8E-20 9.4E-25 199.1 17.0 135 378-520 30-168 (350)
98 2o6s_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 182.0 16.0 24 608-631 166-189 (208)
99 2o6s_A Variable lymphocyte rec 99.8 6.4E-20 2.2E-24 180.8 16.5 134 378-519 28-161 (208)
100 3cvr_A Invasion plasmid antige 99.8 4.9E-20 1.7E-24 207.4 16.9 134 347-519 60-193 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 4.6E-20 1.6E-24 183.2 13.4 152 453-668 14-165 (220)
102 2xot_A Amphoterin-induced prot 99.8 2.9E-20 9.9E-25 199.8 12.4 112 584-695 89-205 (361)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-20 2.8E-24 181.3 13.4 156 453-672 14-170 (220)
104 3e6j_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 176.3 15.4 156 452-672 21-176 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.5E-23 172.7 15.9 157 429-648 14-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.4E-23 180.1 16.1 171 424-669 44-214 (291)
107 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.9E-23 172.4 15.1 113 584-696 57-169 (220)
108 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.7E-23 187.5 14.2 108 405-523 21-129 (361)
109 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.9E-23 181.2 13.3 172 399-645 43-214 (291)
110 1dce_A Protein (RAB geranylger 99.8 8.7E-21 3E-25 214.7 -4.7 89 582-673 462-551 (567)
111 1dce_A Protein (RAB geranylger 99.8 5.6E-21 1.9E-25 216.3 -6.6 203 376-662 347-567 (567)
112 1m9s_A Internalin B; cell inva 99.8 2.6E-18 8.8E-23 195.6 14.5 125 378-520 21-145 (605)
113 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.5E-23 195.7 13.7 169 321-520 21-189 (605)
114 3e6j_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 168.8 14.9 111 584-695 65-175 (229)
115 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.4E-22 161.7 12.5 114 584-697 30-144 (192)
116 1w8a_A SLIT protein; signaling 99.7 7E-18 2.4E-22 163.6 9.9 91 582-672 53-143 (192)
117 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.4E-22 161.9 11.2 81 584-668 113-194 (197)
118 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.8E-22 170.8 9.5 170 425-670 18-187 (263)
119 4b8c_D Glucose-repressible alc 99.7 3.8E-18 1.3E-22 199.2 6.2 157 346-528 173-338 (727)
120 4b8c_D Glucose-repressible alc 99.7 4.5E-18 1.5E-22 198.7 6.4 137 376-524 222-359 (727)
121 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 158.3 12.0 114 583-697 31-144 (193)
122 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.1E-21 154.5 13.5 129 377-519 65-194 (197)
123 1xeu_A Internalin C; cellular 99.7 9.1E-17 3.1E-21 164.0 9.2 170 320-521 18-187 (263)
124 3sb4_A Hypothetical leucine ri 99.6 1.7E-16 5.9E-21 168.0 8.3 288 321-683 25-325 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 6.3E-16 2.1E-20 146.4 10.1 135 481-670 23-162 (168)
126 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.3E-20 145.0 12.1 114 583-696 28-141 (177)
127 2wfh_A SLIT homolog 2 protein 99.6 2.9E-15 9.9E-20 145.1 13.5 129 485-670 13-141 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.3E-20 143.1 8.3 129 481-664 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 142.2 12.5 92 582-673 51-142 (177)
130 4fdw_A Leucine rich hypothetic 99.6 6.8E-14 2.3E-18 151.3 23.1 265 321-668 113-383 (401)
131 2ell_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 141.5 10.3 133 378-519 24-160 (168)
132 3sb4_A Hypothetical leucine ri 99.6 4.8E-15 1.6E-19 156.9 12.1 76 584-661 251-327 (329)
133 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 139.0 8.6 129 377-515 16-149 (149)
134 4fdw_A Leucine rich hypothetic 99.6 2.5E-13 8.4E-18 146.9 23.1 249 314-644 129-383 (401)
135 3g39_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 137.9 10.5 110 584-696 10-119 (170)
136 4fs7_A Uncharacterized protein 99.6 2.9E-13 9.9E-18 147.0 23.2 330 89-511 64-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.2E-21 154.1 -3.5 162 446-669 14-186 (198)
138 4fs7_A Uncharacterized protein 99.5 4.8E-13 1.7E-17 145.2 21.5 82 420-514 247-328 (394)
139 2r9u_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 135.0 10.5 109 585-696 14-122 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.8E-14 9.5E-19 136.1 8.2 86 582-669 63-154 (176)
141 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 151.3 -5.3 154 477-690 13-183 (198)
142 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 130.1 11.0 91 583-673 30-120 (170)
143 1a9n_A U2A', U2A'; complex (nu 99.4 2.6E-13 8.9E-18 129.3 10.4 131 319-463 17-153 (176)
144 2r9u_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 127.4 11.0 91 583-673 33-123 (174)
145 2ifg_A High affinity nerve gro 99.4 6.6E-13 2.3E-17 141.6 9.1 108 586-696 11-120 (347)
146 4gt6_A Cell surface protein; l 99.4 6E-11 2.1E-15 128.6 23.5 128 376-518 263-390 (394)
147 4gt6_A Cell surface protein; l 99.3 2.9E-10 9.8E-15 123.3 24.0 86 120-209 57-146 (394)
148 3un9_A NLR family member X1; l 99.3 9E-14 3.1E-18 148.8 -5.5 50 603-652 207-260 (372)
149 2ifg_A High affinity nerve gro 99.3 6.3E-12 2.2E-16 134.0 8.4 113 582-695 30-144 (347)
150 3un9_A NLR family member X1; l 99.2 2.4E-13 8.3E-18 145.5 -4.2 171 321-502 72-259 (372)
151 4h09_A Hypothetical leucine ri 99.1 1.9E-08 6.6E-13 108.2 24.3 118 376-505 238-355 (379)
152 4h09_A Hypothetical leucine ri 98.9 9.2E-08 3.1E-12 102.9 23.2 129 319-460 215-343 (379)
153 2ra8_A Uncharacterized protein 98.8 1.7E-09 5.8E-14 114.6 4.0 83 582-666 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.8E-09 6.2E-14 114.4 2.6 160 420-642 166-341 (362)
155 3rw6_A Nuclear RNA export fact 98.7 4.7E-10 1.6E-14 112.5 -4.9 109 122-235 137-259 (267)
156 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.5E-12 92.4 5.2 65 606-672 169-237 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 7.2E-08 2.5E-12 92.0 0.4 93 423-519 62-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.3 9.2E-08 3.2E-12 91.2 1.2 93 399-495 62-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4.3E-06 1.5E-10 77.5 2.3 82 127-210 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.5E-10 74.3 2.4 35 483-517 115-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 5.4E-05 1.8E-09 67.0 5.1 40 657-696 33-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00021 7.2E-09 67.5 2.0 16 502-517 153-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00086 2.9E-08 63.3 6.0 69 93-163 38-111 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.002 7E-08 56.7 6.0 56 587-644 12-68 (130)
165 2lz0_A Uncharacterized protein 51.8 14 0.00049 30.0 4.1 39 143-183 13-51 (100)
166 2lz0_A Uncharacterized protein 42.1 48 0.0017 26.7 5.8 44 391-435 9-52 (100)
167 3ox7_P MH027; urokinase-type p 25.4 24 0.00084 18.9 0.8 11 51-61 4-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.2e-82 Score=748.58 Aligned_cols=653 Identities=29% Similarity=0.400 Sum_probs=477.0
Q ss_pred CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCcccceEecCCCCCEEEEEcCCCCCccc----cc--------
Q 044724 17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMEL----EE-------- 84 (782)
Q Consensus 17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~----~~-------- 84 (782)
++.+.++||+|||+||+++.||. .+++|.. ++|||+|+||+|+ +|||++|+|++..+... .+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 45668999999999999999988 8999975 6799999999998 79999999998876321 00
Q ss_pred ---------cccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc-CCCCCCCE
Q 044724 85 ---------WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL-TRLSSVRS 154 (782)
Q Consensus 85 ---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~ 154 (782)
+...+..|..+++|++|||++|.++|.+|.. ..++++++|++|+|++|.+++.+|..+ .++++|++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL----TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG----GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh----HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 0000135778888888888888888766641 015556666666666665555444443 44555555
Q ss_pred EEccCCcCcCcCChh------------------------hhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccC
Q 044724 155 LKLSYNRLEGSIDVK------------------------EFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA 210 (782)
Q Consensus 155 L~Ls~n~l~~~ip~~------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 210 (782)
|++++|.+++..|.. .+..+++|++|++++|.+++.. |. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~- 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISG- 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCS-
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcC-
Confidence 555555554332221 1256677777777777777653 44 78888888888888
Q ss_pred cccccccchHHHhhcCCCCCeEeCCC-----CCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcccee
Q 044724 211 HIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAE 285 (782)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 285 (782)
+.+.+.+|..+.. +++|++|++++ .+|.. .+++|++|++++|.+++.+|......+++|++|++++|.+.+.
T Consensus 233 -n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 233 -NKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp -SCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred -CcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 6677778888877 88888888877 23333 7788888888888888887776444458888888888888776
Q ss_pred ccccccCCCCCCCccEEEccCCCCCCCCccC-CCCCCCCcEEEccCCcCCccCChhhhhcCC-CCcEEEcccCcCcccCC
Q 044724 286 ITESHSLTAPTFQLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDVSNNNFQGCIPVEIGDILP-SLSCFNISMNALDGSIP 363 (782)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p 363 (782)
.+.. +....+|++|++++|.+.+.++.. +..+++|++|++++|++++.+|..+.. ++ +|++|++++|.+++.+|
T Consensus 310 ~p~~---~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 310 VPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp CCGG---GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH-HTTTCSEEECCSSEEEEECC
T ss_pred cchH---HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh-hhcCCcEEEccCCCcCCCcC
Confidence 5433 345567888888888887666654 778888888888888888888888776 44 78888888888777666
Q ss_pred Cccc------------------ccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724 364 SSFE------------------GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL 425 (782)
Q Consensus 364 ~~~~------------------g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 425 (782)
..+. +.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 5543 2344455567777777777777777777777777777777777777777777777777
Q ss_pred CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724 426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL 505 (782)
Q Consensus 426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 505 (782)
++|++|++++|++++.+|..+.++++|++|++++|++++.+| .+++.+++|++|++++|++++.+|..+..+
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 788888888888877777778788888888888888877777 567788888888888888888888888888
Q ss_pred CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccc--------------ccccc---cc-cc-----cccc
Q 044724 506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISF--------------DFRNT---EK-KV-----EKKS 562 (782)
Q Consensus 506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~-~~-----~~~~ 562 (782)
++|++|++++|+++|.+|..+................ ..++.. .+... .. .. ....
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE-EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhcccccc-ccccccccccccccccccccccccccchhhhccccccccccc
Confidence 8888888888888888888776533111110000000 000000 00000 00 00 0000
Q ss_pred ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642 (782)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 642 (782)
...+.... ......+++|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++||||+|+
T Consensus 617 ~~~~~g~~-----~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 617 SRVYGGHT-----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCEEEEEC-----CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cceecccC-----chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 00000000 0011226789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCCCCCCCCC
Q 044724 643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPA 704 (782)
Q Consensus 643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~C~~~~ 704 (782)
++|.+|..+.++++|++||+++|+++|.||. .+++.++...+|.|||++||.|+..|....
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 9999999999999999999999999999999 799999999999999999999988897554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-62 Score=584.29 Aligned_cols=572 Identities=27% Similarity=0.364 Sum_probs=401.0
Q ss_pred cccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchh--hcCCCCCCCEEEccCCcCcCcCCh
Q 044724 91 LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILS--SLTRLSSVRSLKLSYNRLEGSIDV 168 (782)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~ip~ 168 (782)
.+.++++|+.++++.+.+.. .+. .++++++|++|||++|.+++.+|. .++++++|++|+|++|.+.+.+|.
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~-l~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHING-SVS------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEE-CCC------CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred hHhccCcccccCCcCCCcCC-Cch------hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 46778888888888887643 222 289999999999999999998888 999999999999999999988887
Q ss_pred hhhcCCCCCCEEEcccCCCCCccCCCC---CCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC
Q 044724 169 KEFDSFNNLEVLDMKRNEIDNLVVPQG---FPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS 240 (782)
Q Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~---l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~ 240 (782)
..+.++++|++|++++|++++.. |.. +.++++|++|++++ +.+.+..+. .. +++|++|++++ .+|.
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~--~~-l~~L~~L~Ls~n~l~~~~~~ 218 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGAN-VVGWVLSDGCGELKHLAISG--NKISGDVDV--SR-CVNLEFLDVSSNNFSTGIPF 218 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEET-HHHHHHTTCCTTCCEEECCS--SEEESCCBC--TT-CTTCCEEECCSSCCCSCCCB
T ss_pred HHhccCCCCCEEECCCCccCCcC-ChhhhhhccCCCCCEEECCC--CcccccCCc--cc-CCcCCEEECcCCcCCCCCcc
Confidence 44589999999999999998764 443 56666666666666 333333332 22 45555555544 1222
Q ss_pred ------------------------CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCC
Q 044724 241 ------------------------NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPT 296 (782)
Q Consensus 241 ------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 296 (782)
+..+++|++|++++|.+++.+|.. .+++|++|++++|.+.+.++... ....
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~--~~~~ 293 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL--SGAC 293 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS--CTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH--Hhhc
Confidence 444455555555555554444331 45555555555555554433221 1113
Q ss_pred CCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccc--------
Q 044724 297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG-------- 368 (782)
Q Consensus 297 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g-------- 368 (782)
.+|++|++++|.+.+..|..++.+++|++|++++|.++|.+|......+++|++|++++|.+++.+|..+..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 577888888887777777778888888888888888887888763333788888888888888777766532
Q ss_pred ---------cccccCCC--CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCc
Q 044724 369 ---------HMFSKNFN--LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437 (782)
Q Consensus 369 ---------~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 437 (782)
.++..+.. +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 22333333 5567777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724 438 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN 517 (782)
Q Consensus 438 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 517 (782)
+++.+|..+..+++|++|++++|++++.+| ..++.+++|++|++++|++++.+|.++..+++|++|++++|+
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCC--------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 777777777777777777777777777777 556677777888888887777777777777788888888888
Q ss_pred CCCcCCccccccccccc----ccCCCCCCCCccccccccc-c-ccccccccccEEEEEecCCe----------eeecc--
Q 044724 518 LHGLIPPFFYNTALHES----YNNNSSLDKPFEISFDFRN-T-EKKVEKKSHEIFEFTTKSNA----------YTYQG-- 579 (782)
Q Consensus 518 l~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~----------~~~~~-- 579 (782)
+++.+|..+..++.... .+...+ .++..+.. . ...........+........ ..+.+
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g-----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEES-----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCC-----cCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 77777777766442111 111100 01110000 0 00000111111211111000 00111
Q ss_pred ----hhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724 580 ----RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN 655 (782)
Q Consensus 580 ----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 655 (782)
..++.+..++++.|.++|.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|||++|+++|.+|..+++++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 1245566778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724 656 AFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693 (782)
Q Consensus 656 ~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC 693 (782)
+|++|||++|+++|.+|..+..+..++.+++++|+...
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999999989999999999999998543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-58 Score=538.75 Aligned_cols=575 Identities=20% Similarity=0.179 Sum_probs=374.5
Q ss_pred CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhh
Q 044724 66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS 145 (782)
Q Consensus 66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 145 (782)
..+++.|+++++.+.. +.+..|.++++|++|+|++|.+++..|. +|+++++|++|+|++|.+++..+..
T Consensus 24 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPE------LCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CTTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTT------HHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHH------HHhcccCcCEEECCCCccCccChhh
Confidence 3579999999988753 3345688999999999999999877665 3889999999999999999776678
Q ss_pred cCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhh-
Q 044724 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE- 224 (782)
Q Consensus 146 ~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~- 224 (782)
|+++++|++|++++|.++ .+++..|+++++|++|++++|.+++.. |..+.++++|++|++++ |.+.+..+..+..
T Consensus 93 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSN--NKIQALKSEELDIF 168 (680)
T ss_dssp TTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCS--SCCCCBCHHHHGGG
T ss_pred hccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccC--CcccccCHHHhhcc
Confidence 999999999999999998 666658999999999999999998875 78899999999999999 6667766666542
Q ss_pred cCCCCCeEeCCCC-----CCC-CCCCCCCCeEEccCceeeeecCCCC--cCCCCCCcEEEccCCccceeccccccCCCCC
Q 044724 225 SMPSLKHLSLSNF-----SPS-NDSWTLNQVLWLSNNHFRIPISPDP--LFNHSRLKIFHAYNNEIHAEITESHSLTAPT 296 (782)
Q Consensus 225 ~l~~L~~L~L~~~-----ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 296 (782)
.+++|++|+++++ .|. +..+++|+.++++++.+.+...... ....++|+.|++++|.+.+..+.... ....
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~ 247 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKW 247 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGG
T ss_pred ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCc
Confidence 2689999999872 232 5556666666655554432110000 00224556666666655554332210 0111
Q ss_pred CCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCc-ccccccccCC
Q 044724 297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS-FEGHMFSKNF 375 (782)
Q Consensus 297 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~g~~~~~~~ 375 (782)
.+|++|++++|.+.+..+..+..+++|++|++++|++++..|..+.. +++|+.|++++|...+.++.. +...-...+.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhcccccccccccChhhcc
Confidence 23666666666655555555555666666666666665544444443 556666666555433221100 0000000122
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccccc--CCccccCc--CCCCEEeCCCCccccCCChhccCCCC
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK--IPQWLGNL--TGLQHIIMPKNHLEGPIPVEFCQLDW 451 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~ 451 (782)
.+++|++|++++|.+++..+..|..+++|++|++++|.+... .+..|..+ ++|+.|++++|++++..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 455566666666666555555555556666666655543211 11222222 35555555555555555555555555
Q ss_pred CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC--CcCCcccccc
Q 044724 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH--GLIPPFFYNT 529 (782)
Q Consensus 452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~~ 529 (782)
|++|++++|++++.+|. ..+.++++|++|++++|++++..+..|..+++|+.|++++|.++ +.+|..+..+
T Consensus 407 L~~L~L~~N~l~~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTG-------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp CCEEECCSSCCEEECCS-------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCEEeCCCCcCccccCc-------ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 55555555555554443 23455555555555555555555555555555555555555554 3344444332
Q ss_pred ccccc----ccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC-----
Q 044724 530 ALHES----YNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP----- 600 (782)
Q Consensus 530 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----- 600 (782)
+.... .+...... ......+++|+.|++++|++++..+
T Consensus 480 ~~L~~L~Ls~N~l~~i~---------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 480 RNLTILDLSNNNIANIN---------------------------------DDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTCCEEECCSSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred CCCCEEECCCCCCCcCC---------------------------------hhhhccccccCEEeCCCCCccccchhhccC
Confidence 21000 00000000 0000126689999999999986422
Q ss_pred ---cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcc-
Q 044724 601 ---PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA- 676 (782)
Q Consensus 601 ---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~- 676 (782)
..|+++++|++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++..|..+.
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 606 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc
Confidence 3488999999999999999966566799999999999999999987777889999999999999999998887665
Q ss_pred ccCCCCcccccCCCCCCCCCC
Q 044724 677 QFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 677 ~~~~l~~~~~~gNp~lC~~~l 697 (782)
.+++++.+++.||||.|+|+.
T Consensus 607 ~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHTTCSEEECTTCCCCBCCCC
T ss_pred cccccCEEEccCCCcccCCcc
Confidence 789999999999999999985
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-57 Score=542.78 Aligned_cols=528 Identities=22% Similarity=0.215 Sum_probs=409.1
Q ss_pred CcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCC
Q 044724 55 CQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLS 134 (782)
Q Consensus 55 C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 134 (782)
|.|..|.+ ...+++.|||+++.+.. +.+..|.++++|++|||++|...+.+++. +|.++++|++|+|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-----~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKE-----AFRNLPNLRILDLG 81 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTT-----TTSSCTTCCEEECT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHH-----HhcCCCCCCEEECC
Confidence 56777776 45678899998887743 33456888999999999998766555332 38889999999999
Q ss_pred CCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh-hhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc
Q 044724 135 GNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV-KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA 213 (782)
Q Consensus 135 ~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~ 213 (782)
+|.+++..|..|+++++|++|+|++|.+++.+|. ..|.++++|++|+|++|.+++..++..|+++++|++|++++ |.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~--N~ 159 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS--NQ 159 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES--SC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC--Cc
Confidence 9999888888999999999999999998865654 23888999999999999988876446788999999999998 66
Q ss_pred ccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCC------CcEEEccCCccceecc
Q 044724 214 LNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR------LKIFHAYNNEIHAEIT 287 (782)
Q Consensus 214 ~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~ 287 (782)
+.+..+..+.. +. .++|+.|+++.|.+.+..+.. +..+++ |+.|++++|.+.+..+
T Consensus 160 i~~~~~~~l~~-l~----------------~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 160 IFLVCEHELEP-LQ----------------GKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp CCCCCSGGGHH-HH----------------HCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCeeCHHHccc-cc----------------CCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHH
Confidence 66666666554 30 034445555555555444332 333333 6666666665554433
Q ss_pred ccccCCCCCCCccEEEccC---------CCCCCCCccCCCC--CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccC
Q 044724 288 ESHSLTAPTFQLKSLSLSS---------GYGDGPFRLPIHS--HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN 356 (782)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 356 (782)
..........+++.+.++. +.+.+.....+.. .++|+.|++++|.+.+..|..+.. +++|+.|++++|
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n 300 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYN 300 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCC
Confidence 2221122334555555542 2222222333443 378999999999999666666655 899999999999
Q ss_pred cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCC
Q 044724 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436 (782)
Q Consensus 357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 436 (782)
.+++..|..|. .+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 301 ~i~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 301 KINKIADEAFY--------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCEECTTTTT--------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred cCCCCChHHhc--------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 99988888777 7899999999999999888999999999999999999999888888999999999999999
Q ss_pred ccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec-CccccCCCCCCEEEccC
Q 044724 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV-PVQLCGLNQLQLLDLSD 515 (782)
Q Consensus 437 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~ 515 (782)
.+++.. .+++|+.|++++|+++ .+|. ...+++.|++++|++++.. +..+..+++|+.|+|++
T Consensus 373 ~l~~i~-----~~~~L~~L~l~~N~l~-~l~~-----------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 373 ALTTIH-----FIPSIPDIFLSGNKLV-TLPK-----------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CSCCCS-----SCCSCSEEEEESCCCC-CCCC-----------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCCccc-----CCCCcchhccCCCCcc-cccc-----------cccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 998532 3789999999999998 5562 2468999999999998643 23456899999999999
Q ss_pred CcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCcc
Q 044724 516 NNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL 595 (782)
Q Consensus 516 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 595 (782)
|++++..+..... .+++|+.|++++|.+
T Consensus 436 N~l~~~~~~~~~~----------------------------------------------------~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 436 NRFSSCSGDQTPS----------------------------------------------------ENPSLEQLFLGENML 463 (844)
T ss_dssp CCCCCCCSSSSSC----------------------------------------------------SCTTCCBCEEESCCC
T ss_pred Ccccccccccccc----------------------------------------------------cCCccccccCCCCcc
Confidence 9998654432110 145799999999999
Q ss_pred C-----ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCccc
Q 044724 596 I-----GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 596 ~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
+ +..|..|.++++|++|+|++|++++.+|..|.++++|+.|+|++|+|++..|..+. ++|++|++++|++++.
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 7 45567799999999999999999999999999999999999999999988777766 8999999999999999
Q ss_pred CCCCccccCCCCcccccCCCCCCCCCC
Q 044724 671 IPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 671 ~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
+|.. +.++..+++.|||+.|+|++
T Consensus 542 ~~~~---~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 542 NPDV---FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSCC---CSSCCEEEEEEECCCCSSSC
T ss_pred ChhH---hCCcCEEEecCCCccccccc
Confidence 9984 45788999999999998864
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-56 Score=513.20 Aligned_cols=499 Identities=20% Similarity=0.215 Sum_probs=358.5
Q ss_pred cccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724 91 LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE 170 (782)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~ 170 (782)
.|.++++|++|+|++|++++..|.. |+++++|++|+|++|.+++..|..|+++++|++|++++|.++ .+++..
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~ 124 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDT------FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIP 124 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTT------TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSC
T ss_pred HhccCccceEEECCCCccceeChhh------ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcch
Confidence 3444555555555555544433332 444555555555555554444444555555555555555544 232224
Q ss_pred hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCC--
Q 044724 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQ-- 248 (782)
Q Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~-- 248 (782)
++++++|++|++++|.+++...| .+..+++|++|++++ |.+.+..+..+. .+++|+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~--n~l~~~~~~~~~-------------------~l~~L~~l 182 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQN--NAIHYLSKEDMS-------------------SLQQATNL 182 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCS--SCCCEECHHHHH-------------------TTTTCCSE
T ss_pred hccCCcccEEECCCCcccccCcc-cccCCcccCEEEccc--CcccccChhhhh-------------------hhccccee
Confidence 44455555555555554443212 222245555555554 333333333333 345555
Q ss_pred eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCC---CCCCccCCCCCC--CC
Q 044724 249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYG---DGPFRLPIHSHK--SL 323 (782)
Q Consensus 249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~~--~L 323 (782)
.|++++|.+++..+ ..+ ...+|+.|++++|....... . ......++.+.+..... ....+..+..+. +|
T Consensus 183 ~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~--~--~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 183 SLNLNGNDIAGIEP-GAF-DSAVFQSLNFGGTQNLLVIF--K--GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp EEECTTCCCCEECT-TTT-TTCEEEEEECTTCSCHHHHH--H--HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred EEecCCCccCccCh-hHh-hhccccccccCCchhHHHHh--h--hccccchhheechhhccccccccChhHhchhhcCce
Confidence 67788888876544 333 44678888888875211100 0 01111233333322111 111112222222 78
Q ss_pred cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL 403 (782)
Q Consensus 324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (782)
+.|++++|.+++..+..+.. +++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~lp~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPSGLV--------GLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-CCCSSCC--------SCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred eEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-CCChhhc--------ccccCCEEECccCCcCcCchhhhhccCc
Confidence 99999999998544444554 899999999999998 5666665 7899999999999999888889999999
Q ss_pred CcEEECcCCcccccCCc-cccCcCCCCEEeCCCCccccCC--ChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 404 LKGLYLNNNNLSGKIPQ-WLGNLTGLQHIIMPKNHLEGPI--PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 404 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..| ..+..
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~ 398 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--------EAFKE 398 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--------TTTTT
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--------HHhcC
Confidence 99999999999876665 4889999999999999998776 7889999999999999999998888 56788
Q ss_pred CCCCCEEEcCCCcceeecCcc-ccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
+++|++|++++|++++..+.. +..+++|++|++++|.+++..|..+..
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------- 447 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------- 447 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-------------------------------
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-------------------------------
Confidence 999999999999999776654 889999999999999999887776644
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCcc---CCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH---IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 636 (782)
+++|+.|++++|++++. .+..+..+++|++|+|++|++++.+|..|+++++|+.|
T Consensus 448 ----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 448 ----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp ----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 55799999999999872 34679999999999999999999999999999999999
Q ss_pred ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
||++|++++.+|..+.+++.| +|++++|++++.+|..+..+++++.+++.|||+.|+|+
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999 99999999999999878889999999999999999986
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-54 Score=505.38 Aligned_cols=540 Identities=23% Similarity=0.226 Sum_probs=442.5
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 175 (782)
+++++|+|++|.+++..+. .|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|...|++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA------NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG------GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred CCCcEEECCCCCCCCcCHH------HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCC
Confidence 6899999999999876554 3899999999999999999999999999999999999999998 78876799999
Q ss_pred CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCC----CCC----CCCCCCC
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF----SPS----NDSWTLN 247 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~----ip~----~~~l~~L 247 (782)
+|++|++++|++++.. |..|+++++|++|++++ +.+.+..+..+.. +++|++|+++++ ++. ...+++|
T Consensus 98 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSH--NGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCS--SCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CCCEEECCCCccCccC-hhHccccCCCCEEECCC--CcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccc
Confidence 9999999999998875 78899999999999999 6677777777777 999999999882 222 2356899
Q ss_pred CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCC--CcE
Q 044724 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKS--LRL 325 (782)
Q Consensus 248 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~ 325 (782)
+.|++++|.+++. ++..+..+++|+.+++.++.+...............+++.|++++|.+.+..+..+..++. |++
T Consensus 174 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 174 KKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp SEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred cEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 9999999999854 4456889999999999998876432111000123468999999999999988888887755 999
Q ss_pred EEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc-----cCC----c
Q 044724 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG-----EIP----Q 396 (782)
Q Consensus 326 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~ 396 (782)
|++++|++++..|..+.. +++|++|++++|.+++..|..+. .+++|++|++++|...+ .+| .
T Consensus 253 L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLH--------GLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp EECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTT--------TCTTCCEEECTTCBCCC------CCEECTT
T ss_pred EECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhc--------CCCCccEEeccchhhhcccccccccccChh
Confidence 999999999776776766 89999999999999998888877 79999999999876553 233 2
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccC--CChhccCC--CCCceEeccCCcceeeCCCCccc
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP--IPVEFCQL--DWLQILDISDNNISGSLPSCFHL 472 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~ 472 (782)
.|..+++|++|++++|.+.+..+..|.++++|++|++++|.+... .+..|..+ ++|+.|++++|++++..|
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~----- 398 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES----- 398 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-----
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-----
Confidence 688899999999999999999999999999999999999985432 33344433 689999999999998888
Q ss_pred cchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCC-CCCCCcccccc
Q 044724 473 LSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS-SLDKPFEISFD 550 (782)
Q Consensus 473 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 550 (782)
..+..+++|++|++++|++++.+| ..+.++++|++|++++|++++..+..+..++......... .+.....++
T Consensus 399 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p-- 473 (680)
T 1ziw_A 399 ---DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP-- 473 (680)
T ss_dssp ---TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--
T ss_pred ---hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC--
Confidence 567889999999999999998766 6899999999999999999988777776543111110000 000000000
Q ss_pred ccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCC------
Q 044724 551 FRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP------ 624 (782)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------ 624 (782)
.....+++|+.|++++|++++..|..|.++++|++|+|++|++++..+
T Consensus 474 --------------------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 474 --------------------------SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp --------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred --------------------------cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 001226789999999999998888889999999999999999996532
Q ss_pred --ccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCC
Q 044724 625 --STFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFL 692 (782)
Q Consensus 625 --~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~l 692 (782)
..|+++++|++|+|++|+++...+..|.++++|++|++++|++++..+..+..+.+++.+++.+|...
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 24889999999999999999555567999999999999999999888877788899999999999643
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-54 Score=503.68 Aligned_cols=508 Identities=18% Similarity=0.162 Sum_probs=349.8
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 175 (782)
+++++|+|++|++++..+.. |.++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++ +++..|++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS------FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCT
T ss_pred CCcCEEECCCCCcCEeChhh------ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcc
Confidence 44555555555554443322 5555555555555555554445555555555555555555542 2222455555
Q ss_pred CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCC----C-CC-CCCCCCC-
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF----S-PS-NDSWTLN- 247 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~----i-p~-~~~l~~L- 247 (782)
+|++|++++|.+++.. +..++++++|++|++++ |.+.+ .+|..+.+ +++|++|+++++ + |. ++.+++|
T Consensus 105 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~--n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 105 SLENLVAVETKLASLE-SFPIGQLITLKKLNVAH--NFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCS--SCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred cCCEEEccCCcccccc-ccccCCCCCCCEEeCCC--CcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccc
Confidence 5555555555555443 34455555555555555 33332 33444444 555555555541 1 11 2233333
Q ss_pred ---CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCC------CccCCC
Q 044724 248 ---QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGP------FRLPIH 318 (782)
Q Consensus 248 ---~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~ 318 (782)
+.+++++|.++ .+++..+... +|++|++++|.+.+...... ......++.+++..+...+. ....+.
T Consensus 181 ~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 181 QVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHH--HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred cccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHH--hccccccccccccccccccCCcccccChHHhh
Confidence 36677777766 3444434333 67777777776543211000 12223444444432222111 011111
Q ss_pred CCC--CCcEEEc-cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724 319 SHK--SLRLLDV-SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP 395 (782)
Q Consensus 319 ~~~--~L~~L~L-s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~ 395 (782)
.+. .++.+++ ..|.+.+.+|. +.. +++|+.|++++|.+.. +| .+. .+++|++|++++|.+ +.+|
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~-l~-~l~--------~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKY-LE-DVP--------KHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCC-CC-CCC--------TTCCCSEEEEESCCC-SSCC
T ss_pred hhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchh-hh-hcc--------ccccCCEEEcccccC-cccc
Confidence 111 4667777 67788877776 544 8999999999999864 44 444 688999999999999 5777
Q ss_pred ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccC--CChhccCCCCCceEeccCCcceeeCCCCcccc
Q 044724 396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP--IPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473 (782)
Q Consensus 396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 473 (782)
.+ .+++|++|++++|+..+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ +|
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~------ 392 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS------ 392 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC------
T ss_pred -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch------
Confidence 45 8999999999999665544 577899999999999999876 48889999999999999999885 55
Q ss_pred chhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccc
Q 044724 474 SIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR 552 (782)
Q Consensus 474 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (782)
..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..
T Consensus 393 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------ 446 (606)
T 3vq2_A 393 --ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------ 446 (606)
T ss_dssp --CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------
T ss_pred --hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------
Confidence 356788999999999999998777 68899999999999999999888776644
Q ss_pred ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCc-cCCcccccccccceeecccccccccCCccccCCC
Q 044724 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIG-HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631 (782)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 631 (782)
+++|+.|++++|.+++ .+|..++.+++|++|+|++|++++.+|..|++++
T Consensus 447 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 447 -----------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp -----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -----------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 4579999999999998 4788999999999999999999999999999999
Q ss_pred CCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccC-CCCcccccCCCCCCCCCCC
Q 044724 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFA-TFNESSYKGNPFLCGLPLP 698 (782)
Q Consensus 632 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~lC~~~l~ 698 (782)
+|++|++++|++++.+|..+.++++|++|++++|+++. +|..+..++ +++.+++.+||+.|+|+..
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999999999999999999999999999999999995 444377776 5999999999999998763
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-53 Score=494.01 Aligned_cols=503 Identities=19% Similarity=0.171 Sum_probs=407.9
Q ss_pred CCEEEEEcCCCCCccccc-------------------cccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCC
Q 044724 67 GRVIQLYLSNTRSMELEE-------------------WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNN 127 (782)
Q Consensus 67 ~~V~~L~L~~~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~ 127 (782)
..++.|+++++.+....+ ..+.+..|.++++|++|+|++|++++..|.. |+++++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA------LSGPKA 106 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT------TSSCTT
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh------hccccc
Confidence 357777777776643211 1133556899999999999999999877764 999999
Q ss_pred CcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc--EE
Q 044724 128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE--HL 205 (782)
Q Consensus 128 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~--~L 205 (782)
|++|+|++|.+++..+..++++++|++|++++|.++ .++...+..+++|++|++++|.+++.. +..++.+++|+ +|
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSL 184 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCSEEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCcccccC-hhhhhhhcccceeEE
Confidence 999999999999887889999999999999999998 443225666999999999999999875 77888999999 89
Q ss_pred ecccCcccccccchHHHhhcCCCCCeEeCCCCC--CC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcc
Q 044724 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS--PS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282 (782)
Q Consensus 206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~i--p~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 282 (782)
++++ +.+.+..|..+. ..+|++|++++.. +. +..+..++...+... .+..+....+....+
T Consensus 185 ~l~~--n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~------------~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 185 NLNG--NDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG------------TFEDMDDEDISPAVF 248 (606)
T ss_dssp ECTT--CCCCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC------------CCTTSCCCCCCGGGG
T ss_pred ecCC--CccCccChhHhh--hccccccccCCchhHHHHhhhccccchhheech------------hhccccccccChhHh
Confidence 9999 666665555443 3456666665411 11 111222211111111 111111111111111
Q ss_pred ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccC
Q 044724 283 HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI 362 (782)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 362 (782)
. .....+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+.. +++|++|++++|.+++..
T Consensus 249 ~---------~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 249 E---------GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLC 317 (606)
T ss_dssp G---------GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGG
T ss_pred c---------hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCc
Confidence 1 111236888999999888888888999999999999999999 89988876 899999999999999887
Q ss_pred CCcccccccccCCCCCCCCEEEccCccccccCCc-cccCCCCCcEEECcCCcccccC--CccccCcCCCCEEeCCCCccc
Q 044724 363 PSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ-SLSKCFLLKGLYLNNNNLSGKI--PQWLGNLTGLQHIIMPKNHLE 439 (782)
Q Consensus 363 p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~ 439 (782)
|..+. ++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.
T Consensus 318 ~~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 318 QISAS--------NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp GGCGG--------GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred hhhhh--------ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 77776 799999999999999877665 4899999999999999998766 778999999999999999999
Q ss_pred cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 440 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
+..|..|..+++|++|++++|++++..|. ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQ-------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTC-------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccc-------hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 99999999999999999999999987664 34788999999999999999888999999999999999999998
Q ss_pred CcC-C--cccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccC
Q 044724 520 GLI-P--PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI 596 (782)
Q Consensus 520 ~~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 596 (782)
+.. | ..+. .+++|+.|++++|+++
T Consensus 463 ~~~~~~~~~~~-----------------------------------------------------~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 463 KGNIQKTNSLQ-----------------------------------------------------TLGRLEILVLSFCDLS 489 (606)
T ss_dssp GGEECSSCGGG-----------------------------------------------------GCTTCCEEECTTSCCC
T ss_pred ccccccchhhc-----------------------------------------------------cCCCccEEECCCCccC
Confidence 632 1 2222 1668999999999999
Q ss_pred ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724 597 GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 597 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
+..|..|+.+++|++|+|++|++++.+|..|.++++| .|++++|++++.+|..+..+++|+++++++|++++..+.
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999987663
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.3e-53 Score=495.54 Aligned_cols=497 Identities=16% Similarity=0.187 Sum_probs=304.4
Q ss_pred CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCC--CCCCC--Ccc------------cceEecCCCCCEEEEEcCCCCCc
Q 044724 17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAK--GATDC--CQW------------ANVECNNTTGRVIQLYLSNTRSM 80 (782)
Q Consensus 17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~gv~C~~~~~~V~~L~L~~~~~~ 80 (782)
...+..+|++||++||+++.+| +|+... ...+| |.| .||+|+. ++||++|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L- 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA- 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC-
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC-
Confidence 3456778999999999999876 797531 01345 999 9999986 79999999999987
Q ss_pred cccccccCcccccCCCCCCEEeC-CCCCCCCccCCCCccc----------------------------------------
Q 044724 81 ELEEWYLNAYLFTPFQQLESLSL-SANNIAGCVENEGASS---------------------------------------- 119 (782)
Q Consensus 81 ~~~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~---------------------------------------- 119 (782)
.|.+ +..|+++++|++||| ++|.++|..+......
T Consensus 336 -~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 336 -KGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp -EEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred -CCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 3432 256889999999999 8888877633210000
Q ss_pred -----ccccCCCCCcEEeCCC--CCCCCcchhhcCCCCCCCEEEccCCcCcC-----------------cCChhhhc--C
Q 044724 120 -----REVTRLNNLKMFDLSG--NSFNNSILSSLTRLSSVRSLKLSYNRLEG-----------------SIDVKEFD--S 173 (782)
Q Consensus 120 -----~~l~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~ip~~~~~--~ 173 (782)
........++.+.+.. |.+++ +|..|+++++|++|+|++|.++| .+|. .++ +
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~ 489 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSN 489 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGG
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhcc
Confidence 0000111122222222 44444 44445555555555555555543 1343 322 4
Q ss_pred CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc-ccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEE
Q 044724 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA-LNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLW 251 (782)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~ 251 (782)
+++|++|+|++|.+.+.. |..+.++++|++|++++ |. +++ .+|..++. ++
T Consensus 490 L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~--N~~lsg~~iP~~i~~-L~------------------------ 541 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIAC--NRGISAAQLKADWTR-LA------------------------ 541 (876)
T ss_dssp CTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTT--CTTSCHHHHHHHHHH-HH------------------------
T ss_pred CCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcC--CCCcccccchHHHHh-hh------------------------
Confidence 444444444444444432 44444444444444444 32 333 33333332 00
Q ss_pred ccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724 252 LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN 331 (782)
Q Consensus 252 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n 331 (782)
..+..+++|+.|++++|
T Consensus 542 ---------------------------------------------------------------~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 542 ---------------------------------------------------------------DDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp ---------------------------------------------------------------HCTTTTTTCCEEECCSS
T ss_pred ---------------------------------------------------------------hcccccCCccEEEeeCC
Confidence 01113345666666666
Q ss_pred cCCccCCh--hhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC-CcEEE
Q 044724 332 NFQGCIPV--EIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL-LKGLY 408 (782)
Q Consensus 332 ~l~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~ 408 (782)
+++ .+|. .+.. +++|+.|++++|.++ .+| .+. ++++|++|++++|.++ .+|..+..+++ |++|+
T Consensus 559 ~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~--------~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 559 NLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFG--------TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCC--------TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred cCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhc--------CCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 666 5665 5554 666666666666665 444 443 5666666666666666 56666666666 66666
Q ss_pred CcCCcccccCCccccCcCC--CCEEeCCCCccccCCChhc---c--CCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724 409 LNNNNLSGKIPQWLGNLTG--LQHIIMPKNHLEGPIPVEF---C--QLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481 (782)
Q Consensus 409 Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l 481 (782)
+++|.++ .+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|+++ .+|. ..+..+
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~-------~~~~~l 696 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT-------ELFATG 696 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH-------HHHHTT
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH-------HHHccC
Confidence 6666666 55655555433 6666666666665544221 1 2346777777777776 4452 233466
Q ss_pred CCCCEEEcCCCcceeecCccccC--------CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccc
Q 044724 482 SGLSHLILAHNNLEGEVPVQLCG--------LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553 (782)
Q Consensus 482 ~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (782)
++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+...
T Consensus 697 ~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~------------------------ 750 (876)
T 4ecn_A 697 SPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT------------------------ 750 (876)
T ss_dssp CCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT------------------------
T ss_pred CCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc------------------------
Confidence 77777777777776 44443322 227777777777777 555544300
Q ss_pred cccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc------ccccccCCccc
Q 044724 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH------NNLTGTIPSTF 627 (782)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~ 627 (782)
.+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|
T Consensus 751 ---------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 751 ---------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred ---------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 14567777787777776 677777777888887765 88888999999
Q ss_pred cCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC--CCC
Q 044724 628 SKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC--GLP 696 (782)
Q Consensus 628 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC--~~~ 696 (782)
+++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+..........+.+|+..| ||+
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 9999999999999999 68888765 689999999999887666544444445556667776655 664
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-53 Score=490.75 Aligned_cols=517 Identities=18% Similarity=0.202 Sum_probs=329.3
Q ss_pred CCcHHHHHHHHHhHhcCCCCC--------CCcCCCCCCCCCCCCCcc---cceEecCCCCCEEEEEcCCCCCcccccccc
Q 044724 19 GCLDHERFALLQLKHFFNDPV--------NYLHDWVDAKGATDCCQW---ANVECNNTTGRVIQLYLSNTRSMELEEWYL 87 (782)
Q Consensus 19 ~~~~~~~~aLl~~k~~~~~~~--------~~l~~W~~~~~~~~~C~w---~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~ 87 (782)
.....|++||.++|+++.++. ...++|.. +++||.| .||+|+. .|||++|+|+++++ .|.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~l-- 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGRV-- 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEEE--
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCcC--
Confidence 344579999999999986432 12447975 6899999 9999986 49999999999987 3442
Q ss_pred CcccccCCCCCCEEeCCCCCCCCccCCC-------CcccccccCCCCCcEEeCCCCCCCCcchhhcCC------------
Q 044724 88 NAYLFTPFQQLESLSLSANNIAGCVENE-------GASSREVTRLNNLKMFDLSGNSFNNSILSSLTR------------ 148 (782)
Q Consensus 88 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------------ 148 (782)
+..|+++++|++|+|++|.+....... .++. ..+..|+ +++++|.+.+.+|..+..
T Consensus 98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~---~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD---EQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH---HHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred -ChHHhcCccceEEECcCCccccCCccccccccccCchH---HHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 246899999999999999762111000 0000 1134455 666666665555554441
Q ss_pred -------CCCCCEEEcc--CCcCcCcCChhhhcCCCCCCEEEcccCCCCCc-----------------cCCCCCC--CCC
Q 044724 149 -------LSSVRSLKLS--YNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL-----------------VVPQGFP--HFK 200 (782)
Q Consensus 149 -------l~~L~~L~Ls--~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~l~--~l~ 200 (782)
...++.+.+. .|+++| ||. .++++++|++|+|++|.+++. . |..++ +++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~ 249 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLK 249 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCT
T ss_pred cccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccC
Confidence 1112222222 466665 665 677777777777777777762 2 66666 777
Q ss_pred CccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCce-eee-ecCCCCcCCCCCCcEEEcc
Q 044724 201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNH-FRI-PISPDPLFNHSRLKIFHAY 278 (782)
Q Consensus 201 ~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~-l~~-~~~~~~l~~l~~L~~L~l~ 278 (782)
+|++|++++ |.+.+.+|..+++ +++|++|++++|+ ++| .+|.. ++++.
T Consensus 250 ~L~~L~L~~--n~l~~~~p~~l~~-------------------l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~-------- 299 (636)
T 4eco_A 250 DLTDVEVYN--CPNLTKLPTFLKA-------------------LPEMQLINVACNRGISGEQLKDD-WQALA-------- 299 (636)
T ss_dssp TCCEEEEEC--CTTCSSCCTTTTT-------------------CSSCCEEECTTCTTSCHHHHHHH-HHHHH--------
T ss_pred CCCEEEecC--CcCCccChHHHhc-------------------CCCCCEEECcCCCCCccccchHH-HHhhh--------
Confidence 777777777 4444444433322 2333333333343 333 22211 11000
Q ss_pred CCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCCh--hhhhcCCCCcEEEcccC
Q 044724 279 NNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPV--EIGDILPSLSCFNISMN 356 (782)
Q Consensus 279 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~--~~~~~l~~L~~L~Ls~n 356 (782)
.+..+++|++|++++|+++ .+|. .+.. +++|+.|++++|
T Consensus 300 -------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N 340 (636)
T 4eco_A 300 -------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYN 340 (636)
T ss_dssp -------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSC
T ss_pred -------------------------------------ccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCC
Confidence 0112356777777777777 6776 6665 777777777777
Q ss_pred cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC-CcEEECcCCcccccCCccccCcC--CCCEEeC
Q 044724 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL-LKGLYLNNNNLSGKIPQWLGNLT--GLQHIIM 433 (782)
Q Consensus 357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L 433 (782)
.++|.+| .+. .+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++
T Consensus 341 ~l~g~ip-~~~--------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 341 QLEGKLP-AFG--------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp CCEEECC-CCE--------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred cCccchh-hhC--------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 7777777 555 5777777788777777 66777777777 788888877777 6676666544 7777777
Q ss_pred CCCccccCCChhcc-------CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcc-ccCC
Q 044724 434 PKNHLEGPIPVEFC-------QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGL 505 (782)
Q Consensus 434 ~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l 505 (782)
++|.+++..|..+. .+++|++|++++|+++ .+|. ..+..+++|++|+|++|+++ .+|.. +...
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK-------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT-------HHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred cCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH-------HHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 77777777777776 6667777777777777 4442 34456777777777777777 44433 2222
Q ss_pred -------CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeec
Q 044724 506 -------NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ 578 (782)
Q Consensus 506 -------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (782)
++|++|+|++|+++ .+|..+...
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~------------------------------------------------- 510 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRAT------------------------------------------------- 510 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTT-------------------------------------------------
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhc-------------------------------------------------
Confidence 27777888877777 555544300
Q ss_pred chhhcccceeeccCCccCccCCcccccccccceeec------ccccccccCCccccCCCCCCEEecCCCccccCCchhhh
Q 044724 579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNL------SHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLV 652 (782)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 652 (782)
.+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++++++|++|+|++|++ +.+|..+.
T Consensus 511 --~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 511 --TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp --TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred --cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 04567778888887776 7777777788888877 45777778888888888888888888888 57777655
Q ss_pred cCCCCcEEEcccCcCcccCCCCccc--cCCCCcccccCCCCCCCCC
Q 044724 653 ELNAFVVFSFACNNLSGKIPELTAQ--FATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 653 ~l~~L~~L~ls~N~l~~~~p~~~~~--~~~l~~~~~~gNp~lC~~~ 696 (782)
++|++|++++|++....+..+.. ......+.+..+...|+|+
T Consensus 587 --~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 587 --PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp --TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred --CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 67888888888776544331111 1222334444555555654
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.6e-49 Score=455.98 Aligned_cols=479 Identities=22% Similarity=0.209 Sum_probs=377.7
Q ss_pred CCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEE
Q 044724 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205 (782)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 205 (782)
++|++|+|++|.+++..+..|.++++|++|++++|.++ .+++..|.++++|++|+|++|.+++.. |..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEE
Confidence 78999999999999988889999999999999999998 565558999999999999999999986 8999999999999
Q ss_pred ecccCcccccccchHHHhhcCCCCCeEeCCC------CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCc----E
Q 044724 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSN------FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLK----I 274 (782)
Q Consensus 206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~------~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~----~ 274 (782)
++++ +.+.+..+..++. +++|++|++++ .+|. ++++++|+.|++++|.+++. ++..++.+++|+ +
T Consensus 110 ~L~~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 110 VAVE--TKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLS 185 (606)
T ss_dssp ECTT--SCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCE
T ss_pred EccC--CccccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-Chhhhhhhhccccccce
Confidence 9999 6555555455666 77777777766 2344 66677777777777777643 333455554443 6
Q ss_pred EEccCCccceeccccccCCCCCCCccEEEccCCCCC-CCCccCCCCCCCCcEEEccCCcCCcc-----CChhhhhcCC--
Q 044724 275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGD-GPFRLPIHSHKSLRLLDVSNNNFQGC-----IPVEIGDILP-- 346 (782)
Q Consensus 275 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~-----ip~~~~~~l~-- 346 (782)
+++++|.+.+..+.. ....+|++|++++|.+. +..+..+.++++++.+++..+.+.+. ++......+.
T Consensus 186 L~l~~n~l~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQA----FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp EECTTCCCCEECTTT----TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred eeccCCCcceeCccc----ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 777777766543322 12225666666666554 23344445556666655544333211 1111111111
Q ss_pred CCcEEEc-ccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724 347 SLSCFNI-SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL 425 (782)
Q Consensus 347 ~L~~L~L-s~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 425 (782)
.++.+++ ..|.+.+.+|. +. .+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~--------~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l 327 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FH--------CLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DL 327 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CG--------GGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CC
T ss_pred cHhheeccccccccccccc-cc--------cCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CC
Confidence 3344445 55566665554 44 7899999999999997 455 789999999999999999 5788 45 99
Q ss_pred CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC--CCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724 426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503 (782)
Q Consensus 426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 503 (782)
++|++|++++|+..+.. .+..+++|++|++++|++++.. | ..+..+++|++|++++|.+++ +|..+.
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~--------~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS--------YSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC--------HHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh--------hhhccCCcccEeECCCCcccc-chhhcc
Confidence 99999999999665444 6779999999999999998763 6 678899999999999999985 568899
Q ss_pred CCCCCCEEEccCCcCCCcCC-cccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhh
Q 044724 504 GLNQLQLLDLSDNNLHGLIP-PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL 582 (782)
Q Consensus 504 ~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 582 (782)
.+++|+.|++++|++.+..| ..+.. +
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------------------l 423 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLS-----------------------------------------------------L 423 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTT-----------------------------------------------------C
T ss_pred CCCCCCeeECCCCccCCccChhhhhc-----------------------------------------------------c
Confidence 99999999999999998776 34432 5
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccc-cCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
++|+.|++++|.+++..|..++.+++|++|++++|++++ .+|..|+.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 689999999999999999999999999999999999998 4899999999999999999999999999999999999999
Q ss_pred cccCcCcccCCCCccccCCCCcccccCCCCC
Q 044724 662 FACNNLSGKIPELTAQFATFNESSYKGNPFL 692 (782)
Q Consensus 662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~l 692 (782)
+++|++++.+|..+..+++++.+++.+|+..
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 9999999999988888999999999999865
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-49 Score=456.20 Aligned_cols=406 Identities=18% Similarity=0.151 Sum_probs=247.6
Q ss_pred CCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeC
Q 044724 54 CCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDL 133 (782)
Q Consensus 54 ~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~L 133 (782)
.|.|.|+ |+....+++ . ++... .++|++|+|++|++++..+.. |.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~----------~-----ip~~~---~~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L 57 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFT----------S-----IPSGL---TAAMKSLDLSFNKITYIGHGD------LRACANLQVLIL 57 (549)
T ss_dssp EECTTSE-EECTTSCCS----------S-----CCSCC---CTTCCEEECCSSCCCEECSST------TSSCTTCCEEEC
T ss_pred cCCCCce-EECCCCccc----------c-----ccccC---CCCccEEECcCCccCccChhh------hhcCCcccEEEC
Confidence 5999998 975332222 1 12222 278999999999998776654 899999999999
Q ss_pred CCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc
Q 044724 134 SGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA 213 (782)
Q Consensus 134 s~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~ 213 (782)
++|.+++..|.+|+++++|++|++++|.++ .+++..|+++++|++|++++|.+++...|..++++++|++|++++ +.
T Consensus 58 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~--n~ 134 (549)
T 2z81_A 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--VE 134 (549)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE--SS
T ss_pred CCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC--Cc
Confidence 999999988899999999999999999998 567657999999999999999999765578899999999999999 44
Q ss_pred ccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCC
Q 044724 214 LNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293 (782)
Q Consensus 214 ~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 293 (782)
..+.++.. .+..+++|+.|++++|.+++.+|. .+..+++|+.|+++.|.+....... .
T Consensus 135 ~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~---~ 192 (549)
T 2z81_A 135 TFSEIRRI------------------DFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIF---A 192 (549)
T ss_dssp SCCEECTT------------------TTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHH---H
T ss_pred cccccCHh------------------hhhcccccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhh---H
Confidence 33343321 133466778888888888876664 5888888888888888764322111 1
Q ss_pred CCCCCccEEEccCCCCCCCC--cc-CCCCCCCCcEEEccCCcCCccCChhhh---hcCCCCcEEEcccCcCcccCCCccc
Q 044724 294 APTFQLKSLSLSSGYGDGPF--RL-PIHSHKSLRLLDVSNNNFQGCIPVEIG---DILPSLSCFNISMNALDGSIPSSFE 367 (782)
Q Consensus 294 ~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~Ls~n~l~~~~p~~~~ 367 (782)
....+|++|++++|.+.+.. +. ....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+...- .
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~--~ 270 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF--N 270 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC--C
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc--c
Confidence 12345666666666555431 11 123455666666666666554443332 1245666666666665543110 0
Q ss_pred ccccccCCCCCCCCEEEccCcccccc-----CCccccCCCCCcEEECcCCcccccCCccc-cCcCCCCEEeCCCCccccC
Q 044724 368 GHMFSKNFNLTNVRWLLLEENHFVGE-----IPQSLSKCFLLKGLYLNNNNLSGKIPQWL-GNLTGLQHIIMPKNHLEGP 441 (782)
Q Consensus 368 g~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~ 441 (782)
......+..+++|+.|++.++.+... ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++++.
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc
Confidence 00011112455556666655544321 1111122344555555555554 344333 3455555555555555544
Q ss_pred CCh---hccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcC
Q 044724 442 IPV---EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL 518 (782)
Q Consensus 442 ~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 518 (782)
+|. .+..+++|++|++++|++++..+.. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTG------EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTSCCCCHHHHH------HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred cccchhhhhccccCcEEEccCCcccccccch------hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 322 2444555555555555554321100 12444555555555555555 3444555555555555555554
Q ss_pred C
Q 044724 519 H 519 (782)
Q Consensus 519 ~ 519 (782)
+
T Consensus 423 ~ 423 (549)
T 2z81_A 423 R 423 (549)
T ss_dssp S
T ss_pred c
Confidence 4
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=465.82 Aligned_cols=491 Identities=19% Similarity=0.163 Sum_probs=345.7
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI-LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS 173 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 173 (782)
.+++++|||++|.+++..+.. |.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..| ..|.+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASS------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQG 95 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSS------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCS
T ss_pred CCCcCEEECCCCcCCccChhH------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccC
Confidence 478999999999998776654 899999999999999666555 7889999999999999999984445 48999
Q ss_pred CCCCCEEEcccCCCCCccCCC--CCCCCCCccEEecccCcccccccch-HHHhhcCCCCCeEeCCCCCCCCCCCCCCCeE
Q 044724 174 FNNLEVLDMKRNEIDNLVVPQ--GFPHFKSLEHLDMSYAHIALNTNFL-QIIGESMPSLKHLSLSNFSPSNDSWTLNQVL 250 (782)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~-~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L 250 (782)
+++|++|+|++|.+++.. |. .+.++++|++|++++ |.+.+..+ .. ++++++|+.|
T Consensus 96 l~~L~~L~Ls~n~l~~~~-~~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~-------------------~~~L~~L~~L 153 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAV-LKDGYFRNLKALTRLDLSK--NQIRSLYLHPS-------------------FGKLNSLKSI 153 (844)
T ss_dssp CSSCCCEECTTCCCSSCC-STTCCCSSCSSCCEEEEES--CCCCCCCCCGG-------------------GGTCSSCCEE
T ss_pred CcccCEeeCcCCCCCccc-ccCccccccCCCCEEECCC--Ccccccccchh-------------------HhhCCCCCEE
Confidence 999999999999998754 33 488999999999998 55444322 22 3346777788
Q ss_pred EccCceeeeecCCCCcCCC--CCCcEEEccCCccceeccccccC---CCCCCCccEEEccCCCCCCCCccCCCC---CCC
Q 044724 251 WLSNNHFRIPISPDPLFNH--SRLKIFHAYNNEIHAEITESHSL---TAPTFQLKSLSLSSGYGDGPFRLPIHS---HKS 322 (782)
Q Consensus 251 ~Ls~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~ 322 (782)
++++|.+++..+ ..+..+ ++|+.|+++.|.+.+..+..... ......|+.|++++|.+.+..+..+.. .++
T Consensus 154 ~Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 154 DFSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EEESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred ECCCCcCCeeCH-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 888888875544 346655 78888888888887653321110 011123667777766665544443322 245
Q ss_pred CcEEEccCCc---------CCccCChhhhh-cCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc
Q 044724 323 LRLLDVSNNN---------FQGCIPVEIGD-ILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG 392 (782)
Q Consensus 323 L~~L~Ls~n~---------l~~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~ 392 (782)
++.++++.+. +.+..+..+.. ..++|+.|++++|.+.+..|..+. .+++|++|++++|.+++
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--------TLKDLKVLNLAYNKINK 304 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--------SCCCCCEEEEESCCCCE
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--------cCCCCCEEECCCCcCCC
Confidence 6666655322 22111111111 025677777777776666555555 56677777777777776
Q ss_pred cCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccc
Q 044724 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL 472 (782)
Q Consensus 393 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 472 (782)
..|..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++ ++
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----- 378 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----- 378 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS-----
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc-----
Confidence 666667777777777777777766666667777777777777777766666666667777777777776652 22
Q ss_pred cchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccc
Q 044724 473 LSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR 552 (782)
Q Consensus 473 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (782)
.+++|+.|++++|+++ .+|.. ..+++.|++++|++++.....+.
T Consensus 379 -------~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~------------------------- 422 (844)
T 3j0a_A 379 -------FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL------------------------- 422 (844)
T ss_dssp -------SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH-------------------------
T ss_pred -------CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh-------------------------
Confidence 2566777777777766 33432 34566777777776643211100
Q ss_pred ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc-ccccccccceeeccccccc-----ccCCcc
Q 044724 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLT-----GTIPST 626 (782)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-----~~~p~~ 626 (782)
..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++ +..|..
T Consensus 423 ---------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 423 ---------------------------LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp ---------------------------TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred ---------------------------hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 0166899999999999976544 4667899999999999997 455677
Q ss_pred ccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCC
Q 044724 627 FSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG 694 (782)
Q Consensus 627 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~ 694 (782)
|.++++|+.|+|++|++++.+|..|..+++|+.|++++|++++..|..+. .+++.+++++|....-
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 99999999999999999999999999999999999999999998877443 7899999999986553
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-48 Score=445.11 Aligned_cols=492 Identities=20% Similarity=0.240 Sum_probs=351.2
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 175 (782)
+++++|||++|++++..+.. |.++++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|+..|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTT------TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCT
T ss_pred ccccEEEccCCccCccChhH------hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcc
Confidence 45777777777776554432 677777777777777777666667777777777777777776 45544677777
Q ss_pred CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccC
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSN 254 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~ 254 (782)
+|++|++++|++++.. +..++++++|++|++++ +.+.+ .+|..+.+ +++|++| ++++
T Consensus 101 ~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~--n~l~~~~lp~~~~~-l~~L~~L------------------~l~~ 158 (570)
T 2z63_A 101 SLQKLVAVETNLASLE-NFPIGHLKTLKELNVAH--NLIQSFKLPEYFSN-LTNLEHL------------------DLSS 158 (570)
T ss_dssp TCCEEECTTSCCCCST-TCSCTTCTTCCEEECCS--SCCCCCCCCGGGGG-CTTCCEE------------------ECTT
T ss_pred ccccccccccccccCC-CccccccccccEEecCC--CccceecChhhhcc-cCCCCEE------------------eCcC
Confidence 7777777777777664 44577777777777777 44443 34555554 4444443 3344
Q ss_pred ceeeeecCCCCcCCCCCC----cEEEccCCccceeccccccCCCCCCCccEEEccCCCCCC-CCccCCCCCCCCcEEEcc
Q 044724 255 NHFRIPISPDPLFNHSRL----KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDG-PFRLPIHSHKSLRLLDVS 329 (782)
Q Consensus 255 n~l~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~Ls 329 (782)
|.+++ +++..+..+++| +.+++++|.+.+..+.. ....+++.|++++|.... ..+..+..+++++.+++.
T Consensus 159 n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 159 NKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp SCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred Cccce-ecHHHccchhccchhhhhcccCCCCceecCHHH----hccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 44432 222223344444 44444444444432221 111134444444432211 112223344555554443
Q ss_pred CCcCCc-----cCChhhhhcCC--CCcEEEcccC-cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 330 NNNFQG-----CIPVEIGDILP--SLSCFNISMN-ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 330 ~n~l~~-----~ip~~~~~~l~--~L~~L~Ls~n-~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
...+.. .++...+..++ .++.++++++ .+.+..|..+. .+++|++|++++|.++ .+|..+..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~--------~l~~L~~L~l~~~~l~-~l~~~~~~~ 304 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN--------CLTNVSSFSLVSVTIE-RVKDFSYNF 304 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG--------GGTTCSEEEEESCEEC-SCCBCCSCC
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc--------CcCcccEEEecCccch-hhhhhhccC
Confidence 221110 22222222222 3566777777 66666666665 7899999999999998 578888888
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC--CCCccccchhhhc
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHLLSIEQIN 479 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~ 479 (782)
+|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. | ..+.
T Consensus 305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~--------~~~~ 370 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS--------QSDF 370 (570)
T ss_dssp -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE--------HHHH
T ss_pred -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc--------cccc
Confidence 9999999999998 5555 4788999999999998877665 78899999999999998654 4 5678
Q ss_pred CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCc-ccccccccccccCCCCCCCCcccccccccccccc
Q 044724 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP-FFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV 558 (782)
Q Consensus 480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (782)
.+++|++|++++|.+++..+. +..+++|++|++++|++++..|. .+..
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------ 419 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------ 419 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT------------------------------
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc------------------------------
Confidence 899999999999999866554 89999999999999999876652 2222
Q ss_pred ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccc-ccCCccccCCCCCCEEe
Q 044724 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT-GTIPSTFSKLEAYRNLD 637 (782)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~Ld 637 (782)
+++|+.|++++|.+++..|..+.++++|++|+|++|.++ +.+|..|+.+++|++|+
T Consensus 420 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 420 -----------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp -----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred -----------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 567999999999999999999999999999999999998 67899999999999999
Q ss_pred cCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCCC
Q 044724 638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP 698 (782)
Q Consensus 638 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~ 698 (782)
+++|++++..|..|..+++|++|++++|++++.+|..+..+++++.+++.+||+.|+|+..
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999988999999999999999999999998887888999999999999999998753
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=447.00 Aligned_cols=497 Identities=21% Similarity=0.239 Sum_probs=386.7
Q ss_pred CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhh
Q 044724 66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS 145 (782)
Q Consensus 66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 145 (782)
..+++.|+++++.+... .+..|.++++|++|+|++|++++..+.. |+++++|++|+|++|.+++..|..
T Consensus 27 ~~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~i~~~~------~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGA------YQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CSSCCEEECCSCCCCEE-----CTTTTTTCSSCCEEECTTCCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTT
T ss_pred cccccEEEccCCccCcc-----ChhHhhCCCCceEEECCCCcCCccCccc------ccCchhCCEEeCcCCcCCccCHhh
Confidence 34799999999987533 3456899999999999999998766553 899999999999999999888899
Q ss_pred cCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhc
Q 044724 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES 225 (782)
Q Consensus 146 ~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~ 225 (782)
|+++++|++|++++|.++ .++...++++++|++|++++|.+++..+|..++++++|++|++++ +.+.+..+..+..
T Consensus 96 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~- 171 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--NKIQSIYCTDLRV- 171 (570)
T ss_dssp TTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT--SCCCEECGGGGHH-
T ss_pred hcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC--CccceecHHHccc-
Confidence 999999999999999998 677657999999999999999999865588999999999999999 6666666666666
Q ss_pred CCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEcc
Q 044724 226 MPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS 305 (782)
Q Consensus 226 l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 305 (782)
+++|+.+ .+.+++++|.+++.. +..+..+ +|+.|++++|....... .........++...+.
T Consensus 172 l~~L~~~--------------~~~L~l~~n~l~~~~-~~~~~~~-~L~~L~l~~n~~~~~~~--~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 172 LHQMPLL--------------NLSLDLSLNPMNFIQ-PGAFKEI-RLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLV 233 (570)
T ss_dssp HHTCTTC--------------CCEEECTTCCCCEEC-TTTTTTC-EEEEEEEESCCSCTTHH--HHHHHTTTTCEEEEEE
T ss_pred hhccchh--------------hhhcccCCCCceecC-HHHhccC-cceeEecccccccccch--hhhhcCccccceeeec
Confidence 5555110 034555555555322 2333333 56666665553211000 0000001111111111
Q ss_pred CCCC------CCCCccCCCCCC--CCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCC
Q 044724 306 SGYG------DGPFRLPIHSHK--SLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376 (782)
Q Consensus 306 ~n~~------~~~~~~~~~~~~--~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~ 376 (782)
.... .......+..++ .++.++++++ .+.+.+|..+.. +++|+.|++++|.++ .+|..+. .
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~--------~ 303 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSY--------N 303 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCS--------C
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhc--------c
Confidence 0000 000011122222 3577888877 677777777766 899999999999987 4565554 5
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCC--ChhccCCCCCce
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI--PVEFCQLDWLQI 454 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~ 454 (782)
+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++
T Consensus 304 ~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 304 F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 6 9999999999998 5554 4788999999999998876665 78899999999999998664 788899999999
Q ss_pred EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccc
Q 044724 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE 533 (782)
Q Consensus 455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 533 (782)
|++++|++++..+ . +..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+..
T Consensus 378 L~l~~n~l~~~~~--------~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 443 (570)
T 2z63_A 378 LDLSFNGVITMSS--------N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----- 443 (570)
T ss_dssp EECCSCSEEEEEE--------E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----
T ss_pred EECCCCccccccc--------c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-----
Confidence 9999999986544 3 6789999999999999987766 57889999999999999999887766543
Q ss_pred cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccC-ccCCccccccccccee
Q 044724 534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI-GHIPPPIGNLTRIQIL 612 (782)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L 612 (782)
+++|+.|++++|.++ +.+|..++.+++|++|
T Consensus 444 ------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 444 ------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp ------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 558999999999998 6799999999999999
Q ss_pred ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
+|++|++++..|..|+++++|++|++++|++++..|..|.++++|+.|++++|++++.+|.
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999999999999999999999888999999999999999999999987
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-47 Score=442.05 Aligned_cols=508 Identities=20% Similarity=0.212 Sum_probs=340.1
Q ss_pred CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCC
Q 044724 97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNN 176 (782)
Q Consensus 97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 176 (782)
++++|||++|+|++..+.. |.++++|++|||++|.++++.+.+|.++++|++|+|++|+++ .+|+..|.++++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~------f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTT
T ss_pred CCCEEEeeCCCCCCCCHHH------HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCC
Confidence 4555666666555443332 555566666666666555555555555666666666666555 455445555666
Q ss_pred CCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCC-C----CC-CCCCC----
Q 044724 177 LEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF-S----PS-NDSWT---- 245 (782)
Q Consensus 177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~-i----p~-~~~l~---- 245 (782)
|++|+|++|++++.. +..|+++++|++|++++ |.+.+ ..|..+.. +++|++|+++++ + |. +..+.
T Consensus 126 L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 126 LQKLVAVETNLASLE-NFPIGHLKTLKELNVAH--NLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CCEEECTTSCCCCST-TCCCTTCTTCCEEECCS--SCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCEEECCCCcCCCCC-hhhhhcCcccCeecccc--CccccCCCchhhcc-chhhhhhcccCccccccccccccchhhhhh
Confidence 666666666555543 44455556666666655 33322 23444444 555666655551 1 11 21111
Q ss_pred CCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCC------CCCCCccCCCC
Q 044724 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGY------GDGPFRLPIHS 319 (782)
Q Consensus 246 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~ 319 (782)
....++++.|.+.. +++..+ ....++.+++.+|.......... ......++...+..+. +.......+..
T Consensus 202 ~~~~~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~--~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 202 LNLSLDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp CCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHH--HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchh--hcCCccccccccccccccccccccccccccccc
Confidence 23456777777763 333323 33455667776665432211000 1112223322222111 11112223344
Q ss_pred CCCCcEEEccCCcCCc---cCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 320 HKSLRLLDVSNNNFQG---CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 320 ~~~L~~L~Ls~n~l~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
...+...++..+.... .++..+.. +.+++.+++..+.+....+ +. ....++.|++.+|.+.+..+.
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~--~~--------~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNC-LTNVSSFSLVSVTIERVKD--FS--------YNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGG-GTTCSEEEEESCEEEECGG--GG--------SCCCCSEEEEESCEESSCCCC
T ss_pred ccchhhhhhhhhhhcccccchhhhhhh-hcccccccccccccccccc--cc--------cchhhhhhhcccccccCcCcc
Confidence 4556666655443321 22223333 6789999998888765433 22 467899999999988765443
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccc--cCCChhccCCCCCceEeccCCcceeeCCCCccccc
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS 474 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 474 (782)
.+..|+.+++..|.+.... ....+++|+.+++++|.+. +..+..+..+.+|+.++++.|......+
T Consensus 347 ---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~------- 414 (635)
T 4g8a_A 347 ---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS------- 414 (635)
T ss_dssp ---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-------
T ss_pred ---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-------
Confidence 4567899999998876433 3457899999999999875 3467778888999999999999875433
Q ss_pred hhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccc
Q 044724 475 IEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553 (782)
Q Consensus 475 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (782)
.+..+++|+.++++.|+.....+ ..+..+++++.++++.|.+.+..|..+..
T Consensus 415 --~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------------------- 467 (635)
T 4g8a_A 415 --NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------- 467 (635)
T ss_dssp --CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------
T ss_pred --cccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------------------
Confidence 45678999999999998775544 46788999999999999998777765533
Q ss_pred cccccccccccEEEEEecCCeeeecchhhcccceeeccCCcc-CccCCcccccccccceeecccccccccCCccccCCCC
Q 044724 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL-IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEA 632 (782)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 632 (782)
++.++.|++++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++
T Consensus 468 ----------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 468 ----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp ----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ----------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 45789999999975 4568899999999999999999999999999999999
Q ss_pred CCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcccc-CCCCcccccCCCCCCCCCC
Q 044724 633 YRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQF-ATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 633 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~~~~~gNp~lC~~~l 697 (782)
|++|+|++|+|++..|..|..+++|++|++++|+|++.+|..+..+ .+++.+++.+|||.|+|.+
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999999999999999999999999999999999877776 6799999999999999863
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-47 Score=432.61 Aligned_cols=438 Identities=18% Similarity=0.206 Sum_probs=227.6
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 175 (782)
++|++|+|++|++++..+. .|.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|. . .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS------DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC-H--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH------HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC-C--CCC
T ss_pred ccccEEECCCCcccccChh------hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc-c--ccC
Confidence 5666666666666544332 2566666666666666666555666666666666666666665 5554 2 566
Q ss_pred CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCC--CeEEcc
Q 044724 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN--QVLWLS 253 (782)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L--~~L~Ls 253 (782)
+|++|++++|.+++..+|..++++++|++|++++ +.+.+. .+.. +++| +.|+++
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~--n~l~~~---~~~~-------------------l~~L~L~~L~l~ 146 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST--THLEKS---SVLP-------------------IAHLNISKVLLV 146 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE--SSCCGG---GGGG-------------------GTTSCEEEEEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecC--cccchh---hccc-------------------cccceeeEEEee
Confidence 6666666666665543355566666666666665 333221 1111 2233 555555
Q ss_pred Ccee--eeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCC-ccCCCCCCCCcEEEccC
Q 044724 254 NNHF--RIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLLDVSN 330 (782)
Q Consensus 254 ~n~l--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~Ls~ 330 (782)
+|.+ .+..|. .+..+.. + ...+++++|...+.. ...+..+++|+.|++++
T Consensus 147 ~n~l~~~~~~~~-~l~~l~~-~-------------------------~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 147 LGETYGEKEDPE-GLQDFNT-E-------------------------SLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp ECTTTTSSCCTT-TTTTCCE-E-------------------------EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred cccccccccccc-ccccccc-c-------------------------eEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 5555 333322 1222221 0 112222333332222 22345566777777777
Q ss_pred Cc-------CCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc-----
Q 044724 331 NN-------FQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL----- 398 (782)
Q Consensus 331 n~-------l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----- 398 (782)
|. +.+.+| .+.. +++|+.|++++|.+++..+..+.... ..++|++|++++|+++|.+|..+
T Consensus 200 n~~~~~~~~~~~~~~-~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 200 VLEDNKCSYFLSILA-KLQT-NPKLSNLTLNNIETTWNSFIRILQLV-----WHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp CCSTTTTHHHHHHHH-GGGG-CTTCCEEEEEEEEEEHHHHHHHHHHH-----HTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred cccccccceeecchh-hhcc-ccchhhccccccccCHHHHHHHHHHh-----hhCcccEEEeecccccCccccchhhccc
Confidence 65 444444 3444 66677777766666543222211000 13466666666666666666655
Q ss_pred cCCCCCcEEECcCCcccccCC-ccccCc---CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccc
Q 044724 399 SKCFLLKGLYLNNNNLSGKIP-QWLGNL---TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS 474 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 474 (782)
..+++|+.+++++|.+ .+| ..+..+ .+|++|++++|.+.... .+..+++|++|++++|++++.+|
T Consensus 273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~------- 341 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVF------- 341 (520)
T ss_dssp CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT-------
T ss_pred ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhh-------
Confidence 5666666666666666 333 333333 45666666666554321 11455556666666666655555
Q ss_pred hhhhcCCCCCCEEEcCCCccee--ecCccccCCCCCCEEEccCCcCCCcCCcc-cccccccccccCCCCCCCCccccccc
Q 044724 475 IEQINGLSGLSHLILAHNNLEG--EVPVQLCGLNQLQLLDLSDNNLHGLIPPF-FYNTALHESYNNNSSLDKPFEISFDF 551 (782)
Q Consensus 475 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (782)
..++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..
T Consensus 342 -~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----------------------- 397 (520)
T 2z7x_B 342 -ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----------------------- 397 (520)
T ss_dssp -TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----------------------
T ss_pred -hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----------------------
Confidence 344555566666666666554 33445555566666666666555433322 111
Q ss_pred cccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCC
Q 044724 552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631 (782)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 631 (782)
+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..++
T Consensus 398 ------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 398 ------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp ------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC
Confidence 23455555555555555444443 45555555555555 4455444555
Q ss_pred CCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCccc
Q 044724 632 AYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 632 ~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~ 670 (782)
+|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 5555555555555 23332 55555555555555555543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-47 Score=440.27 Aligned_cols=470 Identities=18% Similarity=0.218 Sum_probs=355.5
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCC------CC------cchhhcCCCCCCCEEEccCCcCc
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSF------NN------SILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
.+++.|+|+++.+.|.+|++ +++|++|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA------IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVD 151 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTC
T ss_pred CCEEEEEecCcccCCcCChH------HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhc
Confidence 47788888888888777754 78888888888888865 11 223322 44566 667777666
Q ss_pred CcCChhhhc-CCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCC
Q 044724 164 GSIDVKEFD-SFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSND 242 (782)
Q Consensus 164 ~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~ 242 (782)
+.+|. .+. .+..+..+++....+.. .....++.+.+....+.+++ +|..+++
T Consensus 152 ~~~~~-~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~------------------ 204 (636)
T 4eco_A 152 YDPRE-DFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMR------------------ 204 (636)
T ss_dssp CCGGG-GSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGG------------------
T ss_pred cCchh-hHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhc------------------
Confidence 55554 332 12222333333222211 11123333334332255555 6665555
Q ss_pred CCCCCCeEEccCceeeee-----------------cCCCCcC--CCCCCcEEEccCCccceeccccccCCCCCCCccEEE
Q 044724 243 SWTLNQVLWLSNNHFRIP-----------------ISPDPLF--NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS 303 (782)
Q Consensus 243 ~l~~L~~L~Ls~n~l~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 303 (782)
+++|++|+|++|.+++. +|.. ++ ++++|++|++++|.+.
T Consensus 205 -l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~-------------------- 262 (636)
T 4eco_A 205 -LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNL-------------------- 262 (636)
T ss_dssp -CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTC--------------------
T ss_pred -ccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCC--------------------
Confidence 56666777777888764 5543 55 6666666666665544
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEccCCc-CCc-cCChhhhhcC------CCCcEEEcccCcCcccCCC--ccccccccc
Q 044724 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNN-FQG-CIPVEIGDIL------PSLSCFNISMNALDGSIPS--SFEGHMFSK 373 (782)
Q Consensus 304 l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~ip~~~~~~l------~~L~~L~Ls~n~l~~~~p~--~~~g~~~~~ 373 (782)
+..|..++++++|++|++++|+ ++| .+|..++. + ++|++|++++|.++ .+|. .+.
T Consensus 263 -------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~------ 327 (636)
T 4eco_A 263 -------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQ------ 327 (636)
T ss_dssp -------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHT------
T ss_pred -------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhc------
Confidence 4456667789999999999998 998 89998886 5 89999999999998 7777 666
Q ss_pred CCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC-CCEEeCCCCccccCCChhccCCC--
Q 044724 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG-LQHIIMPKNHLEGPIPVEFCQLD-- 450 (782)
Q Consensus 374 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~-- 450 (782)
++++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 328 --~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 328 --KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp --TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred --cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 79999999999999999999 8999999999999999999 88999999999 999999999999 7888887755
Q ss_pred CCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccc
Q 044724 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTA 530 (782)
Q Consensus 451 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 530 (782)
+|++|++++|++++.+|..+..... ....+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|.......
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDP-TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCS-SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhccccc-ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 8999999999999988854321000 0016789999999999999544445667999999999999999 5555432210
Q ss_pred ccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc--cccc
Q 044724 531 LHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG--NLTR 608 (782)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~ 608 (782)
. .....+++|+.|+|++|+++ .+|..+. .+++
T Consensus 481 ~---------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 481 N---------------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp T---------------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred c---------------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 0 00011458999999999999 7888887 9999
Q ss_pred cceeecccccccccCCccccCCCCCCEEec------CCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCC
Q 044724 609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDL------SYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFN 682 (782)
Q Consensus 609 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~ 682 (782)
|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+.++++|++|++++|++ +.+|..+. ++++
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~ 590 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNIS 590 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCC
Confidence 9999999999997 8999999999999999 56889999999999999999999999999 77887433 7899
Q ss_pred cccccCCCCCCCC
Q 044724 683 ESSYKGNPFLCGL 695 (782)
Q Consensus 683 ~~~~~gNp~lC~~ 695 (782)
.+++++||+.|-.
T Consensus 591 ~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 591 VLDIKDNPNISID 603 (636)
T ss_dssp EEECCSCTTCEEE
T ss_pred EEECcCCCCcccc
Confidence 9999999999843
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-46 Score=424.47 Aligned_cols=411 Identities=19% Similarity=0.177 Sum_probs=304.8
Q ss_pred CcccceEecC--CCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEe
Q 044724 55 CQWANVECNN--TTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFD 132 (782)
Q Consensus 55 C~w~gv~C~~--~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~ 132 (782)
|++.+++.-. ...+++.|+++++.+... .+..|.++++|++|+|++|++++..+.. |+++++|++|+
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~ 80 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKSSRINTIEGDA------FYSLGSLEHLD 80 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEE
T ss_pred CCCCccccccccCCCCccEEECcCCccCcc-----ChhhhhcCCcccEEECCCCCcCccChhh------ccccccCCEEE
Confidence 3455554432 235799999999987533 3456899999999999999999777654 99999999999
Q ss_pred CCCCCCCCcchhhcCCCCCCCEEEccCCcCcC-cCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCc
Q 044724 133 LSGNSFNNSILSSLTRLSSVRSLKLSYNRLEG-SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH 211 (782)
Q Consensus 133 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 211 (782)
|++|.+++..|..|+++++|++|++++|.+++ .+|. .++++++|++|++++|.+.+...+..+.++++|++|++++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-- 157 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-- 157 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE--
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC--
Confidence 99999999888889999999999999999984 2344 7999999999999999955444357899999999999999
Q ss_pred ccccccchHHHhhcCCCCCeEeCCCC----CCC--CCCCCCCCeEEccCceeeeec--CCCCcCCCCCCcEEEccCCccc
Q 044724 212 IALNTNFLQIIGESMPSLKHLSLSNF----SPS--NDSWTLNQVLWLSNNHFRIPI--SPDPLFNHSRLKIFHAYNNEIH 283 (782)
Q Consensus 212 ~~~~~~~~~~l~~~l~~L~~L~L~~~----ip~--~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~l~~L~~L~l~~n~l~ 283 (782)
+.+.+..|..+.. +++|++|+++.. +|. +..+++|+.|++++|.+++.. +......+++|+.|++++|.+.
T Consensus 158 n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 7778888888877 788888877652 122 234677777777777766421 1122344566777777766655
Q ss_pred eeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCC------hhhhhcCCCCcEEEcccCc
Q 044724 284 AEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIP------VEIGDILPSLSCFNISMNA 357 (782)
Q Consensus 284 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip------~~~~~~l~~L~~L~Ls~n~ 357 (782)
+..... .+..+..+++|+.+++++|.+.+... ..+. .+++|+.|++.++.
T Consensus 237 ~~~~~~-----------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 237 DESFNE-----------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS-ELGKVETVTIRRLH 292 (549)
T ss_dssp HHHHHH-----------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC-CCTTCCEEEEESCB
T ss_pred hhHHHH-----------------------HHHHhhhhccccccccccccccccccccccchhhhh-hhcccccccccccc
Confidence 432110 11223456899999999998875211 1122 37899999999987
Q ss_pred CcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc-cCCCCCcEEECcCCcccccCCc---cccCcCCCCEEeC
Q 044724 358 LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL-SKCFLLKGLYLNNNNLSGKIPQ---WLGNLTGLQHIIM 433 (782)
Q Consensus 358 l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L 433 (782)
+..... +. .++......++|++|++++|.++ .+|..+ ..+++|++|++++|++++.+|. .++.+++|++|++
T Consensus 293 i~~~~~--~~-~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 293 IPQFYL--FY-DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp CSCGGG--SC-CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred cchhhh--cc-cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 653211 00 00000113578999999999997 567665 5799999999999999987643 4788999999999
Q ss_pred CCCccccCCC--hhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEE
Q 044724 434 PKNHLEGPIP--VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511 (782)
Q Consensus 434 ~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 511 (782)
++|++++..+ ..+..+++|++|++++|+++ .+| ..+..+++|++|++++|++++ +|..+ .++|++|
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--------~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L 436 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP--------DSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVL 436 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC--------SCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEE
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC--------hhhcccccccEEECCCCCccc-ccchh--cCCceEE
Confidence 9999986543 56899999999999999998 677 456788999999999999973 34332 2466777
Q ss_pred EccCCcCCC
Q 044724 512 DLSDNNLHG 520 (782)
Q Consensus 512 ~Ls~N~l~~ 520 (782)
++++|++++
T Consensus 437 ~Ls~N~l~~ 445 (549)
T 2z81_A 437 DVSNNNLDS 445 (549)
T ss_dssp ECCSSCCSC
T ss_pred ECCCCChhh
Confidence 777776654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-46 Score=423.30 Aligned_cols=456 Identities=20% Similarity=0.206 Sum_probs=371.8
Q ss_pred CEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCC
Q 044724 99 ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLE 178 (782)
Q Consensus 99 ~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 178 (782)
++||+++|++++ +|.. +. ++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+++..|.++++|+
T Consensus 3 ~~l~ls~n~l~~-ip~~------~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKD------LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSS-CCCS------CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCC
T ss_pred ceEecCCCCccc-cccc------cc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCC
Confidence 579999999985 4432 43 89999999999999988899999999999999999998 45445899999999
Q ss_pred EEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCcee
Q 044724 179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHF 257 (782)
Q Consensus 179 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l 257 (782)
+|+|++|+++.+ |.. .+++|++|++++ |.+.+ .+|..++. +++|++|++++|.+
T Consensus 73 ~L~Ls~N~l~~l--p~~--~l~~L~~L~L~~--N~l~~~~~p~~~~~-------------------l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 73 YLDLSHNKLVKI--SCH--PTVNLKHLDLSF--NAFDALPICKEFGN-------------------MSQLKFLGLSTTHL 127 (520)
T ss_dssp EEECCSSCCCEE--ECC--CCCCCSEEECCS--SCCSSCCCCGGGGG-------------------CTTCCEEEEEESSC
T ss_pred EEecCCCceeec--Ccc--ccCCccEEeccC--Cccccccchhhhcc-------------------CCcceEEEecCccc
Confidence 999999999975 555 899999999999 66555 45566655 56667777788887
Q ss_pred eeecCCCCcCCCCCC--cEEEccCCcc--ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCC-CCcEEEccCCc
Q 044724 258 RIPISPDPLFNHSRL--KIFHAYNNEI--HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK-SLRLLDVSNNN 332 (782)
Q Consensus 258 ~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~Ls~n~ 332 (782)
++ ..+..+++| +.|++++|.+ .+.. +..+..+. +...+++++|.
T Consensus 128 ~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~---------------------------~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 128 EK----SSVLPIAHLNISKVLLVLGETYGEKED---------------------------PEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CG----GGGGGGTTSCEEEEEEEECTTTTSSCC---------------------------TTTTTTCCEEEEEEECCSSS
T ss_pred ch----hhccccccceeeEEEeecccccccccc---------------------------cccccccccceEEEEeccCc
Confidence 64 246777888 9999999987 3321 22222222 34467899999
Q ss_pred CCccCChhhhhcCCCCcEEEcccCc-------CcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc---CCC
Q 044724 333 FQGCIPVEIGDILPSLSCFNISMNA-------LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS---KCF 402 (782)
Q Consensus 333 l~~~ip~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~ 402 (782)
+.+.++......+++|+.|++++|. +.+.+| .+. .+++|+.|++++|.+++..+..+. ..+
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--------~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--------TNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--------GCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchh-hhc--------cccchhhccccccccCHHHHHHHHHHhhhC
Confidence 9888887766668999999999997 555544 343 789999999999988864332221 246
Q ss_pred CCcEEECcCCcccccCCccc-----cCcCCCCEEeCCCCccccCCC-hhccCC---CCCceEeccCCcceeeCCCCcccc
Q 044724 403 LLKGLYLNNNNLSGKIPQWL-----GNLTGLQHIIMPKNHLEGPIP-VEFCQL---DWLQILDISDNNISGSLPSCFHLL 473 (782)
Q Consensus 403 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~ 473 (782)
+|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------- 318 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML------- 318 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-------
Confidence 89999999999999999988 8999999999999999 455 555554 67999999999986432
Q ss_pred chhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC--cCCcccccccccccccCCCCCCCCccccccc
Q 044724 474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG--LIPPFFYNTALHESYNNNSSLDKPFEISFDF 551 (782)
Q Consensus 474 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (782)
....+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..
T Consensus 319 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----------------------- 372 (520)
T 2z7x_B 319 ---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----------------------- 372 (520)
T ss_dssp ---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-----------------------
T ss_pred ---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-----------------------
Confidence 12578999999999999998899999999999999999999986 33444432
Q ss_pred cccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcc-cccccccceeecccccccccCCccccCC
Q 044724 552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP-IGNLTRIQILNLSHNNLTGTIPSTFSKL 630 (782)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 630 (782)
+++|+.||+++|++++.+|.. +..+++|+.|++++|++++.+|..+.
T Consensus 373 ------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-- 420 (520)
T 2z7x_B 373 ------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-- 420 (520)
T ss_dssp ------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred ------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence 568999999999999866654 88999999999999999998888775
Q ss_pred CCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 631 EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 631 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
++|+.||+++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+.
T Consensus 421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 79999999999999 8898888999999999999999964444477888999999999999999864
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.4e-44 Score=419.64 Aligned_cols=310 Identities=18% Similarity=0.244 Sum_probs=260.2
Q ss_pred ccCCCCCCCCcEEEccCCc-CCc-cCChhhhh------cCCCCcEEEcccCcCcccCCC--cccccccccCCCCCCCCEE
Q 044724 314 RLPIHSHKSLRLLDVSNNN-FQG-CIPVEIGD------ILPSLSCFNISMNALDGSIPS--SFEGHMFSKNFNLTNVRWL 383 (782)
Q Consensus 314 ~~~~~~~~~L~~L~Ls~n~-l~~-~ip~~~~~------~l~~L~~L~Ls~n~l~~~~p~--~~~g~~~~~~~~l~~L~~L 383 (782)
|..+.++++|+.|++++|+ ++| .+|..++. .+++|+.|++++|.++ .+|. .+. ++++|++|
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~--------~L~~L~~L 578 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ--------KMVKLGLL 578 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT--------TCTTCCEE
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh--------cCCCCCEE
Confidence 3345567788888999887 887 78887765 1349999999999999 7777 666 79999999
Q ss_pred EccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC-CCEEeCCCCccccCCChhccCCCC--CceEeccCC
Q 044724 384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG-LQHIIMPKNHLEGPIPVEFCQLDW--LQILDISDN 460 (782)
Q Consensus 384 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~Ls~N 460 (782)
++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 99999999 788 8999999999999999999 89999999999 999999999999 78888877755 999999999
Q ss_pred cceeeCCCCccccchhhhc--CCCCCCEEEcCCCcceeecCcc-ccCCCCCCEEEccCCcCCCcCCcccccccccccccC
Q 044724 461 NISGSLPSCFHLLSIEQIN--GLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN 537 (782)
Q Consensus 461 ~l~~~~p~~~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 537 (782)
++++.+|... ..+. .+++|+.|+|++|+++ .+|.. +..+++|+.|+|++|+++ .+|.........
T Consensus 655 ~l~g~ip~l~-----~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~----- 722 (876)
T 4ecn_A 655 KIGSEGRNIS-----CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG----- 722 (876)
T ss_dssp CTTTTSSSCS-----SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS-----
T ss_pred cCCCccccch-----hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc-----
Confidence 9998776321 1122 4468999999999999 55554 458999999999999999 566543321100
Q ss_pred CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc--cccccceeecc
Q 044724 538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG--NLTRIQILNLS 615 (782)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls 615 (782)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|+
T Consensus 723 ----------------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 723 ----------------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp ----------------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECC
T ss_pred ----------------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeC
Confidence 0011558999999999999 7899887 99999999999
Q ss_pred cccccccCCccccCCCCCCEEecCC------CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCC
Q 044724 616 HNNLTGTIPSTFSKLEAYRNLDLSY------NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGN 689 (782)
Q Consensus 616 ~N~l~~~~p~~~~~l~~L~~LdLs~------N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gN 689 (782)
+|++++ +|..++++++|+.|+|++ |++.+.+|..+.++++|+.|++++|++ +.+|..+ +++++.+++++|
T Consensus 762 ~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N 837 (876)
T 4ecn_A 762 YNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN 837 (876)
T ss_dssp SSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSC
T ss_pred CCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCC
Confidence 999997 799999999999999977 889999999999999999999999999 7888743 368999999999
Q ss_pred CCCC
Q 044724 690 PFLC 693 (782)
Q Consensus 690 p~lC 693 (782)
|+..
T Consensus 838 ~l~~ 841 (876)
T 4ecn_A 838 PNIS 841 (876)
T ss_dssp TTCE
T ss_pred CCCc
Confidence 9765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-43 Score=403.05 Aligned_cols=459 Identities=18% Similarity=0.174 Sum_probs=305.2
Q ss_pred EEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCC
Q 044724 70 IQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRL 149 (782)
Q Consensus 70 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 149 (782)
+.+|++++++..+. ... .++|++|+|++|.+++..+. .|.++++|++|+|++|.+++..|..|.++
T Consensus 34 ~~l~ls~~~L~~ip-----~~~---~~~L~~L~Ls~N~i~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 34 SMVDYSNRNLTHVP-----KDL---PPRTKALSLSQNSISELRMP------DISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp CEEECTTSCCCSCC-----TTS---CTTCCEEECCSSCCCCCCGG------GTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred cEEEcCCCCCccCC-----CCC---CCCcCEEECCCCCccccChh------hhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 67889888775332 222 27899999999998866554 38889999999999999998888889999
Q ss_pred CCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCC
Q 044724 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSL 229 (782)
Q Consensus 150 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L 229 (782)
++|++|+|++|.++ .+|.. .+++|++|++++|++++...|..|+++++|++|++++ +.+.+. .+.. +++
T Consensus 100 ~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~--n~l~~~---~~~~-l~~- 168 (562)
T 3a79_B 100 QDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA--AKFRQL---DLLP-VAH- 168 (562)
T ss_dssp TTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC--SBCCTT---TTGG-GTT-
T ss_pred CCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCC--CccccC---chhh-hhh-
Confidence 99999999999998 78863 7899999999999998865467888899999999998 444331 1111 111
Q ss_pred CeEeCCCCCCCCCCCCCCCeEEccCcee--eeecCCCCcCCCCC-CcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724 230 KHLSLSNFSPSNDSWTLNQVLWLSNNHF--RIPISPDPLFNHSR-LKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306 (782)
Q Consensus 230 ~~L~L~~~ip~~~~l~~L~~L~Ls~n~l--~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 306 (782)
+ +|+.|++++|.+ ++..+. .+..++. .-.++++.|.+
T Consensus 169 --------------L-~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~------------------------ 208 (562)
T 3a79_B 169 --------------L-HLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSL------------------------ 208 (562)
T ss_dssp --------------S-CEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSC------------------------
T ss_pred --------------c-eeeEEEeecccccccccCcc-cccccCcceEEEEecCccc------------------------
Confidence 1 237777777777 543332 2333220 01223333333
Q ss_pred CCCCCCC-ccCCCCCCCCcEEEccCCcC-----CccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCC
Q 044724 307 GYGDGPF-RLPIHSHKSLRLLDVSNNNF-----QGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380 (782)
Q Consensus 307 n~~~~~~-~~~~~~~~~L~~L~Ls~n~l-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L 380 (782)
.+.. ...+..+++|+.+++++|+. .+. +..+.. +++|+.++++++.+.+.....+.. .. ..++|
T Consensus 209 ---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~----~~-~~~~L 278 (562)
T 3a79_B 209 ---FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTR-GPTLLNVTLQHIETTWKCSVKLFQ----FF-WPRPV 278 (562)
T ss_dssp ---CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHS-CSSCEEEEEEEEEECHHHHHHHHH----HH-TTSSE
T ss_pred ---hhhhhhhcccccceEEEecccccccccchHHHH-HHHHhc-cCcceEEEecCCcCcHHHHHHHHH----hh-hcccc
Confidence 2211 12334667888888888752 211 223333 678888888877765432111110 00 23578
Q ss_pred CEEEccCccccccCCccc-----cCCCCCcEEECcCCcccccCC-ccccCc---CCCCEEeCCCCccccCCChhccCCCC
Q 044724 381 RWLLLEENHFVGEIPQSL-----SKCFLLKGLYLNNNNLSGKIP-QWLGNL---TGLQHIIMPKNHLEGPIPVEFCQLDW 451 (782)
Q Consensus 381 ~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~ 451 (782)
++|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|++|++++|.+.... ....+++
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~ 354 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS 354 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence 888888888887777766 5666666666666666 344 233222 56788888887765322 1256777
Q ss_pred CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCccee--ecCccccCCCCCCEEEccCCcCCCcCCcc-ccc
Q 044724 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG--EVPVQLCGLNQLQLLDLSDNNLHGLIPPF-FYN 528 (782)
Q Consensus 452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~ 528 (782)
|++|++++|++++.+| ..++.+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|.. +..
T Consensus 355 L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVF--------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCEEECCSSCCCTTTT--------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred ceEEECCCCccccchh--------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 8888888888777666 456677778888888887775 23456777778888888888777655543 211
Q ss_pred ccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccc
Q 044724 529 TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTR 608 (782)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 608 (782)
+++|+.|++++|++++.+|..+. ++
T Consensus 427 -----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 427 -----------------------------------------------------AESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred -----------------------------------------------------cccCCEEECCCCCCCcchhhhhc--Cc
Confidence 44677777777777776666554 57
Q ss_pred cceeecccccccccCCccccCCCCCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCcccCC
Q 044724 609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGKIP 672 (782)
Q Consensus 609 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~~p 672 (782)
|++|+|++|+++ .+|..+.++++|++|+|++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 777777777777 56666667777777777777777 45544 7777777777777777776555
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=398.64 Aligned_cols=459 Identities=22% Similarity=0.219 Sum_probs=354.9
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF 174 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 174 (782)
+...+++|+++|++++ +|.. +. ++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+++..|.++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~------~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 99 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKD------LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFN 99 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTT------SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTC
T ss_pred cCCCcEEEcCCCCCcc-CCCC------CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCC
Confidence 3345899999999986 4432 32 89999999999999988899999999999999999998 5555589999
Q ss_pred CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724 175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS 253 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls 253 (782)
++|++|+|++|+++.+ |.. .+++|++|++++ |.+.+ .+|..+.. +++|++|+++
T Consensus 100 ~~L~~L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~--N~l~~l~~p~~~~~-------------------l~~L~~L~L~ 154 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNI--SCC--PMASLRHLDLSF--NDFDVLPVCKEFGN-------------------LTKLTFLGLS 154 (562)
T ss_dssp TTCCEEECTTSCCCEE--CSC--CCTTCSEEECCS--SCCSBCCCCGGGGG-------------------CTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcc--Ccc--ccccCCEEECCC--CCccccCchHhhcc-------------------cCcccEEecC
Confidence 9999999999999965 555 899999999999 55544 33445544 5666777778
Q ss_pred CceeeeecCCCCcCCCCCC--cEEEccCCcc--ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCC-CCcEEEc
Q 044724 254 NNHFRIPISPDPLFNHSRL--KIFHAYNNEI--HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK-SLRLLDV 328 (782)
Q Consensus 254 ~n~l~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~L 328 (782)
+|.+++ ..+..+++| ++|++++|.+ .+..+ ..+..+. ..-.+++
T Consensus 155 ~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~---------------------------~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 155 AAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGET---------------------------ESLQIPNTTVLHLVF 203 (562)
T ss_dssp CSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSC---------------------------CEEEECCEEEEEEEE
T ss_pred CCcccc----CchhhhhhceeeEEEeecccccccccCc---------------------------ccccccCcceEEEEe
Confidence 887764 235566666 9999999987 43221 1111111 1225688
Q ss_pred cCCcCCccCChhhhhcCCCCcEEEcccCcC-----cccCCCcccccccccCCCCCCCCEEEccCccccccC----Ccccc
Q 044724 329 SNNNFQGCIPVEIGDILPSLSCFNISMNAL-----DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI----PQSLS 399 (782)
Q Consensus 329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l-----~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~ 399 (782)
++|.+.+.++......+++|+.+++++|.. .+.+ ..+. .++.|+.++++++.+.+.. +..+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~--------~l~~L~~L~L~~~~l~~~~~~~~~~~~- 273 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELT--------RGPTLLNVTLQHIETTWKCSVKLFQFF- 273 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHH--------SCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHh--------ccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence 999998888876666688999999999852 1111 1222 6788899998888776432 2222
Q ss_pred CCCCCcEEECcCCcccccCCccc-----cCcCCCCEEeCCCCccccCCC-hhccC---CCCCceEeccCCcceeeCCCCc
Q 044724 400 KCFLLKGLYLNNNNLSGKIPQWL-----GNLTGLQHIIMPKNHLEGPIP-VEFCQ---LDWLQILDISDNNISGSLPSCF 470 (782)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~ 470 (782)
...+|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++++|.+....
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---- 347 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---- 347 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC----
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc----
Confidence 23589999999999999999887 7777777778877777 344 33322 267999999999986321
Q ss_pred cccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcC--CcccccccccccccCCCCCCCCcccc
Q 044724 471 HLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI--PPFFYNTALHESYNNNSSLDKPFEIS 548 (782)
Q Consensus 471 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (782)
....+++|++|++++|++++..|..+.++++|++|++++|++++.. |..+..
T Consensus 348 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------- 401 (562)
T 3a79_B 348 ------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-------------------- 401 (562)
T ss_dssp ------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------------
T ss_pred ------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------------
Confidence 1257899999999999999889999999999999999999998632 222322
Q ss_pred ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc-ccccccccceeecccccccccCCccc
Q 044724 549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTF 627 (782)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~ 627 (782)
+++|+.|++++|++++.+|. .+..+++|++|+|++|++++.+|..+
T Consensus 402 ---------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 402 ---------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp ---------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred ---------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 56899999999999985665 58899999999999999998888766
Q ss_pred cCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 628 SKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 628 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
. ++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+.
T Consensus 449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 5 79999999999999 7888888999999999999999964444477888999999999999999864
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-39 Score=377.10 Aligned_cols=468 Identities=21% Similarity=0.169 Sum_probs=329.2
Q ss_pred CCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEE
Q 044724 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205 (782)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 205 (782)
+++++|||++|.|++..+.+|.++++|++|+|++|+++ .+|+++|.++++|++|+|++|++++.. +..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEE
Confidence 47999999999999888889999999999999999998 788778999999999999999999885 6789999999999
Q ss_pred ecccCcccccccchHHHhhcCCCCCeEeCCC------CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCC----CcE
Q 044724 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSN------FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSR----LKI 274 (782)
Q Consensus 206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~------~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~----L~~ 274 (782)
++++ |.+.+..+..++. +++|++|++++ .+|. ++.++.|+.|++++|++++..+ ..+..+++ ...
T Consensus 130 ~Ls~--N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 130 VAVE--TNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS 205 (635)
T ss_dssp ECTT--SCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCCE
T ss_pred ECCC--CcCCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhhhhhh
Confidence 9999 5555544444554 66666666554 1122 3445555555555555543222 22322222 223
Q ss_pred EEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcc
Q 044724 275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS 354 (782)
Q Consensus 275 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 354 (782)
++++.|.+... .+..+ ....++.+++.+|.....++......++.++...+.
T Consensus 206 ~~ls~n~l~~i---------------------------~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 206 LDLSLNPMNFI---------------------------QPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp EECTTCCCCEE---------------------------CTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred hhcccCccccc---------------------------Ccccc-cchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 44444444433 22222 122334445544443333322222223444433332
Q ss_pred cCcCccc------CCCcc-------------------cccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEEC
Q 044724 355 MNALDGS------IPSSF-------------------EGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYL 409 (782)
Q Consensus 355 ~n~l~~~------~p~~~-------------------~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 409 (782)
.+..... ....+ ...++.......+++.+++.++.+.... .+.....|+.|++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l 335 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL 335 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence 2211100 00000 0011111224667888888888776433 3566678899999
Q ss_pred cCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc
Q 044724 410 NNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489 (782)
Q Consensus 410 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L 489 (782)
.+|.+.+..+. .+..|+.+++..|.+... .....+++|+.+++++|.+....+.. ..+..+.+|+++++
T Consensus 336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~------~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS------QSDFGTISLKYLDL 404 (635)
T ss_dssp ESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECC------HHHHSCSCCCEEEC
T ss_pred ccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccc------cchhhhhhhhhhhc
Confidence 99888755443 456788888888876643 33457889999999999886432211 45667888999999
Q ss_pred CCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEE
Q 044724 490 AHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFT 569 (782)
Q Consensus 490 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (782)
..|.+.. .+..+..+++|+.+++++|+.....+....
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~------------------------------------------ 441 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------------------------------------------ 441 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT------------------------------------------
T ss_pred ccccccc-ccccccccccccchhhhhcccccccccccc------------------------------------------
Confidence 9998874 455688899999999998887655443211
Q ss_pred ecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccc-cccCCccccCCCCCCEEecCCCccccCCc
Q 044724 570 TKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL-TGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648 (782)
Q Consensus 570 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 648 (782)
..+++++.+++++|.+.+..|..+..++.|+.|+|++|++ .+.+|..|..+++|++|||++|+|++.+|
T Consensus 442 ----------~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 442 ----------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp ----------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ----------ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 1156789999999999999999999999999999999985 45688999999999999999999999999
Q ss_pred hhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724 649 RQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693 (782)
Q Consensus 649 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC 693 (782)
..|.++++|++|+|++|+|++..|..+..+++++.+++++|...-
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 999999999999999999999999878889999999999998554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.9e-39 Score=356.51 Aligned_cols=374 Identities=22% Similarity=0.187 Sum_probs=283.5
Q ss_pred CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724 96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI-LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF 174 (782)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 174 (782)
++|++|+|++|.+++..+.. |+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..| ..|.++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETS------FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCCCEECTTT------TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTC
T ss_pred CccCEEEecCCccCcCChhH------hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCc
Confidence 67888888888887765553 888888888888888887544 5678888888888888888874444 378888
Q ss_pred CCCCEEEcccCCCCCcc-CCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724 175 NNLEVLDMKRNEIDNLV-VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS 253 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls 253 (782)
++|++|++++|.+++.. ....+.++++|++|++++ |.+.+..|..+ +..+++|++|+++
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~------------------~~~l~~L~~L~L~ 162 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPASF------------------FLNMRRFHVLDLT 162 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS--SBCCSCCCCGG------------------GGGCTTCCEEECT
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCC--CccCccCcccc------------------cCCCCcccEEeCC
Confidence 88888888888887643 123478888888888888 55555444431 1234556666677
Q ss_pred CceeeeecCCCCcCCC--CCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724 254 NNHFRIPISPDPLFNH--SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN 331 (782)
Q Consensus 254 ~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n 331 (782)
+|.+++..+ ..+..+ .+|+.+++++|.+.+..+... .......+..+++|++|++++|
T Consensus 163 ~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 163 FNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWL-------------------GWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp TCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCT-------------------THHHHCCTTTTCEEEEEECTTS
T ss_pred CCcccccCh-hhhhccccccccccccccCcccccchhhc-------------------cccccccccccceeeeEecCCC
Confidence 777765443 334443 466666666666553321100 0000112335678999999999
Q ss_pred cCCccCChhhhhc--CCCCcEEEcccCcCcccCCCc--ccccccccC--CCCCCCCEEEccCccccccCCccccCCCCCc
Q 044724 332 NFQGCIPVEIGDI--LPSLSCFNISMNALDGSIPSS--FEGHMFSKN--FNLTNVRWLLLEENHFVGEIPQSLSKCFLLK 405 (782)
Q Consensus 332 ~l~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~p~~--~~g~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 405 (782)
++++.+|..+... .++|+.|++++|...+..... +.+.....+ ...++|++|++++|.+++..|..+..+++|+
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 302 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence 9998888877653 278999999998765432211 000000000 0347899999999999999999999999999
Q ss_pred EEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCC
Q 044724 406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLS 485 (782)
Q Consensus 406 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~ 485 (782)
+|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..| ..+..+++|+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~ 374 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD--------QSFLGLPNLK 374 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh--------hhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998888 5678899999
Q ss_pred EEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCc
Q 044724 486 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP 524 (782)
Q Consensus 486 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 524 (782)
+|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999987777889999999999999999999884
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.1e-39 Score=357.72 Aligned_cols=405 Identities=22% Similarity=0.271 Sum_probs=214.1
Q ss_pred CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCC-------------CEEEccCC
Q 044724 94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSV-------------RSLKLSYN 160 (782)
Q Consensus 94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~Ls~n 160 (782)
+.++|++|++++|++ |.+|.+ ++++++|++|++++|.+++.+|..++++++| ++|++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~------i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVE------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccchhhhcccCch-hhCChh------HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 357888888888888 677764 8888888888888888888888888888765 77888888
Q ss_pred cCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCC
Q 044724 161 RLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240 (782)
Q Consensus 161 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~ 240 (782)
.++ .+|. -.++|++|++++|.+++. |.. .++|++|++++ +.+.+ ++ .
T Consensus 82 ~l~-~lp~----~~~~L~~L~l~~n~l~~l--p~~---~~~L~~L~l~~--n~l~~-l~--------------------~ 128 (454)
T 1jl5_A 82 GLS-SLPE----LPPHLESLVASCNSLTEL--PEL---PQSLKSLLVDN--NNLKA-LS--------------------D 128 (454)
T ss_dssp CCS-CCCS----CCTTCSEEECCSSCCSSC--CCC---CTTCCEEECCS--SCCSC-CC--------------------S
T ss_pred ccc-cCCC----CcCCCCEEEccCCcCCcc--ccc---cCCCcEEECCC--CccCc-cc--------------------C
Confidence 777 4553 136778888888877774 433 36777777777 33322 00 0
Q ss_pred CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCC
Q 044724 241 NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSH 320 (782)
Q Consensus 241 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 320 (782)
. .++|++|++++|.+++ +| .++++++|++|++++|++++.+. ..
T Consensus 129 ~--~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~lp~-------------------------------~~ 172 (454)
T 1jl5_A 129 L--PPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKKLPD-------------------------------LP 172 (454)
T ss_dssp C--CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSCCCC-------------------------------CC
T ss_pred C--CCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcccCC-------------------------------Cc
Confidence 0 1467777778888774 65 37788888888888877654211 01
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++|++|++++|++++ +| .+.. +++|+.|++++|.+++ +|. ..++|++|++++|.++ .+| .+..
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~-----------~~~~L~~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPD-----------LPLSLESIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCC-----------CCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred ccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCC-----------CcCcccEEECcCCcCC-ccc-ccCC
Confidence 356667777776663 55 3444 6677777777776654 222 1246677777777766 455 3666
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++. |. .
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-----------~ 295 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-----------L 295 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-----------C
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-----------c
Confidence 7777777777777764 3332 3567777777777765 3332 36677777777777652 21 1
Q ss_pred CCCCCEEEcCCCcceeecCccccCC-CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGL-NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
.++|++|++++|++++. + .+ ++|++|++++|++++ +|..
T Consensus 296 ~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------------- 335 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---------------------------------- 335 (454)
T ss_dssp CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------------
T ss_pred CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------------
Confidence 15677777777777642 2 22 467777777777765 3321
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccc--cCCccccCCCCCCEEe
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG--TIPSTFSKLEAYRNLD 637 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~Ld 637 (782)
+++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.
T Consensus 336 ----------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-------- 381 (454)
T 1jl5_A 336 ----------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-------- 381 (454)
T ss_dssp ----------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------
T ss_pred ----------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------
Confidence 235677777777777 3555 35677777777777776 56655543
Q ss_pred cCCCccccCCchhhhcCCCCcEEEcccCcCcc--cCCCCccccCCCCcccccCCCCCCC
Q 044724 638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSG--KIPELTAQFATFNESSYKGNPFLCG 694 (782)
Q Consensus 638 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~~~gNp~lC~ 694 (782)
++.|++.|.+|.. +++|++|++++|++++ .+|. ++..+.+.+|...|.
T Consensus 382 L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 382 LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP 431 (454)
T ss_dssp EECCC------------------------------------------------------
T ss_pred hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence 2346666666653 4678888888888887 5664 344555666655553
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-39 Score=359.66 Aligned_cols=387 Identities=23% Similarity=0.294 Sum_probs=242.0
Q ss_pred CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCC-------------CEEEcccCCCCCc
Q 044724 124 RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNL-------------EVLDMKRNEIDNL 190 (782)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L-------------~~L~Ls~n~l~~~ 190 (782)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|. .++.+++| ++|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 457888888888888 67888888888888888888888878886 77777765 5555555554443
Q ss_pred cCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCC
Q 044724 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHS 270 (782)
Q Consensus 191 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 270 (782)
|.. .++|++|+++ +|.+++ +|. ..+
T Consensus 87 --p~~---~~~L~~L~l~---------------------------------------------~n~l~~-lp~----~~~ 111 (454)
T 1jl5_A 87 --PEL---PPHLESLVAS---------------------------------------------CNSLTE-LPE----LPQ 111 (454)
T ss_dssp --CSC---CTTCSEEECC---------------------------------------------SSCCSS-CCC----CCT
T ss_pred --CCC---cCCCCEEEcc---------------------------------------------CCcCCc-ccc----ccC
Confidence 221 1344444444 444443 332 124
Q ss_pred CCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcE
Q 044724 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSC 350 (782)
Q Consensus 271 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 350 (782)
+|++|++++|.+.+... . ..+|++|++++|.+.+ +| .++.+++|++|++++|+++ .+|.. .++|++
T Consensus 112 ~L~~L~l~~n~l~~l~~------~-~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~ 177 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSD------L-PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEF 177 (454)
T ss_dssp TCCEEECCSSCCSCCCS------C-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCE
T ss_pred CCcEEECCCCccCcccC------C-CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccE
Confidence 55555555555543210 0 1356666666666665 34 4778899999999999998 47753 468999
Q ss_pred EEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCE
Q 044724 351 FNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQH 430 (782)
Q Consensus 351 L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 430 (782)
|++++|.+++ +| .+. ++++|++|++++|.+++ +|... ++|++|++++|.++ .+| .++.+++|++
T Consensus 178 L~L~~n~l~~-l~-~~~--------~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 178 IAAGNNQLEE-LP-ELQ--------NLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTT 241 (454)
T ss_dssp EECCSSCCSS-CC-CCT--------TCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCE
T ss_pred EECcCCcCCc-Cc-ccc--------CCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCE
Confidence 9999999986 44 344 78999999999999986 44332 58999999999998 666 4889999999
Q ss_pred EeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCE
Q 044724 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL 510 (782)
Q Consensus 431 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 510 (782)
|++++|++++ +|.. .++|++|++++|++++ +|. ..++|++|++++|++++. |.. .++|++
T Consensus 242 L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~-----------~~~~L~~L~ls~N~l~~l-~~~---~~~L~~ 301 (454)
T 1jl5_A 242 IYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE-----------LPQSLTFLDVSENIFSGL-SEL---PPNLYY 301 (454)
T ss_dssp EECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC-----------CCTTCCEEECCSSCCSEE-SCC---CTTCCE
T ss_pred EECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc-----------ccCcCCEEECcCCccCcc-cCc---CCcCCE
Confidence 9999999986 4432 4789999999999985 552 247899999999999863 221 268999
Q ss_pred EEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeec
Q 044724 511 LDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDL 590 (782)
Q Consensus 511 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 590 (782)
|++++|++++. +.. .++|+.|++
T Consensus 302 L~l~~N~l~~i-~~~--------------------------------------------------------~~~L~~L~L 324 (454)
T 1jl5_A 302 LNASSNEIRSL-CDL--------------------------------------------------------PPSLEELNV 324 (454)
T ss_dssp EECCSSCCSEE-CCC--------------------------------------------------------CTTCCEEEC
T ss_pred EECcCCcCCcc-cCC--------------------------------------------------------cCcCCEEEC
Confidence 99999988752 110 236889999
Q ss_pred cCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcccc--CCchhhhcCCCCcEEEcccCcCc
Q 044724 591 SCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG--KIPRQLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 591 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~ 668 (782)
++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++.+ ++.|++.
T Consensus 325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~ 388 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHL 388 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--
T ss_pred CCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccc
Confidence 9999996 6664 578999999999999 4666 47899999999999998 67776543 4568888
Q ss_pred ccCCCCccccCCCCcccccCCCCCC
Q 044724 669 GKIPELTAQFATFNESSYKGNPFLC 693 (782)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~gNp~lC 693 (782)
|.+|.. +++++.+++++|+...
T Consensus 389 ~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 389 AEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -------------------------
T ss_pred cccccc---cCcCCEEECCCCcCCc
Confidence 888873 5788899999998765
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.9e-39 Score=360.80 Aligned_cols=374 Identities=20% Similarity=0.211 Sum_probs=287.9
Q ss_pred CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCC-ccCCCCCCCCcEE
Q 044724 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLL 326 (782)
Q Consensus 248 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L 326 (782)
+.++.+++.++ .+|. -.++|++|++++|.+.+..+.. +....+|++|++++|.+.+.+ +..+..+++|++|
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETS---FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTT---TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhH---hccCccccEEECcCCcccceECcccccccccCCEE
Confidence 45677777665 4553 2267888999988887764432 345567888888888776544 4567778888888
Q ss_pred EccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCc--ccccccccCCCCCCCCEEEccCccccccCCcc-ccCCCC
Q 044724 327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS--FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS-LSKCFL 403 (782)
Q Consensus 327 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~ 403 (782)
++++|++++..|..+.. +++|++|++++|.+++..+.. +. ++++|++|++++|.+++..|.. +..+++
T Consensus 85 ~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFK--------PLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp ECTTCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTT--------TCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred eCCCCccCccChhhccC-cccCCEEeCCCCCCCccccCccccc--------CcccCCEEECCCCccCccCcccccCCCCc
Confidence 88888887666666665 788888888888887644332 43 6788888888888888776665 677888
Q ss_pred CcEEECcCCcccccCCccccCc--CCCCEEeCCCCccccCCChh--------ccCCCCCceEeccCCcceeeCCCCcccc
Q 044724 404 LKGLYLNNNNLSGKIPQWLGNL--TGLQHIIMPKNHLEGPIPVE--------FCQLDWLQILDISDNNISGSLPSCFHLL 473 (782)
Q Consensus 404 L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 473 (782)
|++|++++|.+++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--- 232 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--- 232 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH---
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh---
Confidence 8888888888887777777665 67888888888877654433 2355778888888888877766322
Q ss_pred chhhhcCCCCCCEEEcCCCcceeec----------CccccC--CCCCCEEEccCCcCCCcCCcccccccccccccCCCCC
Q 044724 474 SIEQINGLSGLSHLILAHNNLEGEV----------PVQLCG--LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSL 541 (782)
Q Consensus 474 ~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 541 (782)
......++|+.|++++|.+.+.. +..+.. .++|++|++++|++++.+|..+..
T Consensus 233 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------------- 297 (455)
T 3v47_A 233 --FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH------------- 297 (455)
T ss_dssp --HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-------------
T ss_pred --hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-------------
Confidence 11223477888888877554321 112222 357888888888888777766543
Q ss_pred CCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccc
Q 044724 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG 621 (782)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 621 (782)
+++|+.|++++|++++..|..|+++++|++|+|++|++++
T Consensus 298 ----------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 298 ----------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ----------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 5589999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 622 TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 622 ~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999888767889999999999999999987
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-39 Score=344.22 Aligned_cols=151 Identities=25% Similarity=0.471 Sum_probs=103.9
Q ss_pred CCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCc--ccceEecCCC--CCEEEEEcCCCCCccccccccCccccc
Q 044724 18 EGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQ--WANVECNNTT--GRVIQLYLSNTRSMELEEWYLNAYLFT 93 (782)
Q Consensus 18 ~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~--w~gv~C~~~~--~~V~~L~L~~~~~~~~~~~~~~~~~~~ 93 (782)
+.|.++|++||++||+++.||. .+++|.. +++||. |.||+|+..+ ++|++|+|+++.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l-------------- 62 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL-------------- 62 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--------------
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCc--------------
Confidence 3699999999999999998876 7899975 578998 9999998644 6788777766544
Q ss_pred CCCCCCEEeCCCCCCCC--ccCCCCcccccccCCCCCcEEeCCC-CCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724 94 PFQQLESLSLSANNIAG--CVENEGASSREVTRLNNLKMFDLSG-NSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE 170 (782)
Q Consensus 94 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~ 170 (782)
++ .+|. .+.++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+++.+|. .
T Consensus 63 ---------------~~~~~~~~------~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~ 120 (313)
T 1ogq_A 63 ---------------PKPYPIPS------SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-F 120 (313)
T ss_dssp ---------------SSCEECCG------GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-G
T ss_pred ---------------cCCcccCh------hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-H
Confidence 33 2332 266667777777763 666666666677777777777777777655664 5
Q ss_pred hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEeccc
Q 044724 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209 (782)
Q Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 209 (782)
|.++++|++|++++|.+++.. |..+..+++|++|++++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDG 158 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCS
T ss_pred HhCCCCCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcC
Confidence 666666666666666665443 44444444444444444
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7e-37 Score=339.18 Aligned_cols=355 Identities=16% Similarity=0.183 Sum_probs=204.8
Q ss_pred ccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724 92 FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF 171 (782)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~ 171 (782)
++++++|++|++++|.+++. |. ++.+++|++|+|++|.+++. | ++.+++|++|++++|.+++ +| +
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~~-------l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-TG-------IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---V 102 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-TT-------GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---C
T ss_pred hhHcCCCCEEEccCCCcccC-hh-------hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---c
Confidence 45667777777777776653 21 66677777777777777653 2 6666777777777777663 33 5
Q ss_pred cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEE
Q 044724 172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLW 251 (782)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~ 251 (782)
+++++|++|++++|++++. + ++.+++|++|++++ |.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~--N~-------------------------------------- 138 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCAR--NT-------------------------------------- 138 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTT--SC--------------------------------------
T ss_pred CCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCC--Cc--------------------------------------
Confidence 6666777777777766653 2 55666666666665 32
Q ss_pred ccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724 252 LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN 331 (782)
Q Consensus 252 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n 331 (782)
+++ ++ ++++++|++|++++|...+. ..+..+++|+.|++++|
T Consensus 139 -----l~~-l~---l~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 139 -----LTE-ID---VSHNTQLTELDCHLNKKITK-----------------------------LDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp -----CSC-CC---CTTCTTCCEEECTTCSCCCC-----------------------------CCCTTCTTCCEEECCSS
T ss_pred -----cce-ec---cccCCcCCEEECCCCCcccc-----------------------------cccccCCcCCEEECCCC
Confidence 221 11 33334444444444422111 01223455666666666
Q ss_pred cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcC
Q 044724 332 NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNN 411 (782)
Q Consensus 332 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 411 (782)
++++ +| +.. +++|+.|++++|.+++. .+. .+++|++|++++|++++ +| +..+++|++|++++
T Consensus 181 ~l~~-l~--l~~-l~~L~~L~l~~N~l~~~---~l~--------~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 181 KITE-LD--VSQ-NKLLNRLNCDTNNITKL---DLN--------QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCCC-CC--CTT-CTTCCEEECCSSCCSCC---CCT--------TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred ccce-ec--ccc-CCCCCEEECcCCcCCee---ccc--------cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 6653 44 333 55666666666665543 122 45666666666666665 33 55566666666666
Q ss_pred CcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCC
Q 044724 412 NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491 (782)
Q Consensus 412 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~ 491 (782)
|++++.. ++.+++|+.|++++| +|+.|++++|++.+.+| ++.+++|+.|++++
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ----------AEGCRKIKELDVTH 295 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE----------CTTCTTCCCCCCTT
T ss_pred CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc----------ccccccCCEEECCC
Confidence 6666432 334555666655543 24455666666555544 23455666666666
Q ss_pred CcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEec
Q 044724 492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK 571 (782)
Q Consensus 492 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (782)
|...+.+|. ..++|+.|++++|
T Consensus 296 n~~l~~l~~---~~~~L~~L~l~~~------------------------------------------------------- 317 (457)
T 3bz5_A 296 NTQLYLLDC---QAAGITELDLSQN------------------------------------------------------- 317 (457)
T ss_dssp CTTCCEEEC---TTCCCSCCCCTTC-------------------------------------------------------
T ss_pred Ccccceecc---CCCcceEechhhc-------------------------------------------------------
Confidence 655555443 2334444444433
Q ss_pred CCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhh
Q 044724 572 SNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQL 651 (782)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l 651 (782)
++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|+++|.
T Consensus 318 -----------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----- 370 (457)
T 3bz5_A 318 -----------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----- 370 (457)
T ss_dssp -----------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----
T ss_pred -----------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----
Confidence 2466777777777763 2 7777777777777777775 23556667777777765
Q ss_pred hcCCCCcEEEcccCcCcccCCC
Q 044724 652 VELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 652 ~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
.++..|..+++++|+++|.+|.
T Consensus 371 ~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 371 GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp EEEEECCCBCCBTTBEEEECCT
T ss_pred ceeeecCccccccCcEEEEcCh
Confidence 2344566677888888887776
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.2e-36 Score=332.92 Aligned_cols=312 Identities=20% Similarity=0.194 Sum_probs=199.5
Q ss_pred CCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc
Q 044724 67 GRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146 (782)
Q Consensus 67 ~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 146 (782)
.+++.|+++++.+... + .|..+++|++|++++|++++. + ++.+++|++|+|++|.+++. + +
T Consensus 42 ~~L~~L~Ls~n~l~~~-----~--~l~~l~~L~~L~Ls~n~l~~~-~--------~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-----T--GIEKLTGLTKLICTSNNITTL-D--------LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp TTCCEEECCSSCCCCC-----T--TGGGCTTCSEEECCSSCCSCC-C--------CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CCCCEEEccCCCcccC-----h--hhcccCCCCEEEccCCcCCeE-c--------cccCCCCCEEECcCCCCcee-e--c
Confidence 4689999999987532 1 478899999999999999864 2 78899999999999999974 3 8
Q ss_pred CCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcC
Q 044724 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM 226 (782)
Q Consensus 147 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l 226 (782)
+++++|++|++++|.++ .+| ++.+++|++|++++|++++. + ++++++|++|++++ |...+.++
T Consensus 103 ~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~--n~~~~~~~------- 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHL--NKKITKLD------- 165 (457)
T ss_dssp TTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTT--CSCCCCCC-------
T ss_pred CCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCC--CCcccccc-------
Confidence 99999999999999998 465 78999999999999999985 2 78889999999998 32222210
Q ss_pred CCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724 227 PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306 (782)
Q Consensus 227 ~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 306 (782)
+..+++|+.|++++|.+++ ++ +..+++|+.|++++|.+++.
T Consensus 166 --------------~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~--------------------- 206 (457)
T 3bz5_A 166 --------------VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL--------------------- 206 (457)
T ss_dssp --------------CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---------------------
T ss_pred --------------cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---------------------
Confidence 2234556666666666653 32 45555555555555544321
Q ss_pred CCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEcc
Q 044724 307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE 386 (782)
Q Consensus 307 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~ 386 (782)
.++.+++|++|++++|++++ +| +.. +++|+.|++++|.+++..+. .+++|+.|+++
T Consensus 207 ---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~-l~~L~~L~l~~N~l~~~~~~-----------~l~~L~~L~l~ 262 (457)
T 3bz5_A 207 ---------DLNQNIQLTFLDCSSNKLTE-ID--VTP-LTQLTYFDCSVNPLTELDVS-----------TLSKLTTLHCI 262 (457)
T ss_dssp ---------CCTTCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCCSCCCCT-----------TCTTCCEEECT
T ss_pred ---------ccccCCCCCEEECcCCcccc-cC--ccc-cCCCCEEEeeCCcCCCcCHH-----------HCCCCCEEecc
Confidence 13345566666666666663 44 333 56666666666666543211 34555555554
Q ss_pred CccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC
Q 044724 387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466 (782)
Q Consensus 387 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 466 (782)
+| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|+++
T Consensus 263 ~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------- 315 (457)
T 3bz5_A 263 QT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------- 315 (457)
T ss_dssp TC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT--------
T ss_pred CC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh--------
Confidence 43 23445555555544444 33445555555555544444332 22333333322
Q ss_pred CCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 467 p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
++++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 316 -------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 316 -------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred -------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 234566666666666653 2 5566666666666666653
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=339.05 Aligned_cols=327 Identities=19% Similarity=0.162 Sum_probs=215.4
Q ss_pred ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724 299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT 378 (782)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~ 378 (782)
++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..|. +++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~ 104 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFT--------GLS 104 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSST--------TCT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCccccc--------CCC
Confidence 444444444444444455666677777777777777555555554 67777777777777655444444 567
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 458 (782)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|.++++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 77777777777776666677777777777777777776666677777777777777777776666667777777777777
Q ss_pred CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538 (782)
Q Consensus 459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 538 (782)
+|.+.+..+ ..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..
T Consensus 185 ~n~i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------- 246 (477)
T 2id5_A 185 HLNINAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---------- 246 (477)
T ss_dssp SCCCCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----------
T ss_pred CCcCcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----------
Confidence 777776555 34566677777777777666666665555567777777777776433233322
Q ss_pred CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccc
Q 044724 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN 618 (782)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 618 (782)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus 247 -------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 247 -------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred -------------------------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 4467777777777776666677777777777777777
Q ss_pred ccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 619 LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 619 l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..+. ...+.......+.++...|..|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence 7777777777777777777777777766666667777777777777777654432 2223333445566666666543
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-37 Score=323.06 Aligned_cols=260 Identities=33% Similarity=0.518 Sum_probs=231.1
Q ss_pred CCCCEEEccCccccc--cCCccccCCCCCcEEECcC-CcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCce
Q 044724 378 TNVRWLLLEENHFVG--EIPQSLSKCFLLKGLYLNN-NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 454 (782)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888887 7788888888888888884 8888888888888888888888888888888888888888999
Q ss_pred EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC-CCCEEEccCCcCCCcCCcccccccccc
Q 044724 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN-QLQLLDLSDNNLHGLIPPFFYNTALHE 533 (782)
Q Consensus 455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 533 (782)
|++++|++++.+| ..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~----- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLP--------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN----- 196 (313)
T ss_dssp EECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-----
T ss_pred EeCCCCccCCcCC--------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-----
Confidence 9999999888888 5677888999999999999888888888887 8999999999998888877654
Q ss_pred cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceee
Q 044724 534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN 613 (782)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 613 (782)
+. |+.|++++|.+++.+|..|+.+++|+.|+
T Consensus 197 ------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 197 ------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp ------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred ------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 23 88899999999999999999999999999
Q ss_pred cccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693 (782)
Q Consensus 614 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC 693 (782)
|++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|. ..++++++.+++.+||++|
T Consensus 228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCCCcc
Confidence 999999987776 88999999999999999999999999999999999999999999999 5889999999999999999
Q ss_pred CCCCCCCC
Q 044724 694 GLPLPICR 701 (782)
Q Consensus 694 ~~~l~~C~ 701 (782)
|.|+..|.
T Consensus 306 ~~p~~~C~ 313 (313)
T 1ogq_A 306 GSPLPACT 313 (313)
T ss_dssp STTSSCCC
T ss_pred CCCCCCCC
Confidence 98887773
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=339.85 Aligned_cols=307 Identities=21% Similarity=0.235 Sum_probs=279.2
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++++.|++++|++++..|..+.. +++|++|++++|.+++..|..|. ++++|++|+|++|++++..+..|..
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFN--------NLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccCEeChhhhh--------CCccCCEEECCCCcCCccCcccccC
Confidence 68999999999999665666665 89999999999999998888887 7999999999999999777778899
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|++|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+ ..+..
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~ 174 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--------EALSH 174 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--------HHHTT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--------hHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986544 57889
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
+++|+.|++++|.+.+..+..|..+++|+.|++++|++.+.+|.....
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------------- 222 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------------------------- 222 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------------------------
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------------------------
Confidence 999999999999999988889999999999999999887766654322
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++
T Consensus 223 ---------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 223 ---------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp ---------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred ---------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 23699999999999965557899999999999999999999999999999999999999
Q ss_pred CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
|++++..|..|..+++|++|++++|++++..+..+..+.+++.+++.+||+.|+|+.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 999999999999999999999999999998887778889999999999999999853
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-35 Score=327.74 Aligned_cols=302 Identities=25% Similarity=0.368 Sum_probs=167.9
Q ss_pred CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724 94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS 173 (782)
Q Consensus 94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 173 (782)
.++++++|+++++.+.. ++. +..+++|++|+|++|.+++..+ +.++++|++|++++|.++ .+++ +.+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-------~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTT
T ss_pred HhccccEEecCCCCCcc-Ccc-------hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcC
Confidence 35678888888887754 222 6677888888888888876544 778888888888888877 4443 778
Q ss_pred CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS 253 (782)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls 253 (782)
+++|++|++++|.+++.. + +.++++|++|++++ +.+.+ ++ .
T Consensus 111 l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~--n~l~~-~~-~-------------------------------- 151 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDID-P--LKNLTNLNRLELSS--NTISD-IS-A-------------------------------- 151 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-G--GTTCTTCSEEEEEE--EEECC-CG-G--------------------------------
T ss_pred CCCCCEEECCCCCCCCCh-H--HcCCCCCCEEECCC--CccCC-Ch-h--------------------------------
Confidence 888888888888877763 2 77777777777777 33322 11 1
Q ss_pred CceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcC
Q 044724 254 NNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNF 333 (782)
Q Consensus 254 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l 333 (782)
+..+++|++|++.+ .+.+ ..++..+++|++|++++|.+
T Consensus 152 ------------~~~l~~L~~L~l~~-~~~~-----------------------------~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 152 ------------LSGLTSLQQLSFGN-QVTD-----------------------------LKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ------------GTTCTTCSEEEEEE-SCCC-----------------------------CGGGTTCTTCCEEECCSSCC
T ss_pred ------------hccCCcccEeecCC-cccC-----------------------------chhhccCCCCCEEECcCCcC
Confidence 22333333333321 1100 00123445555555555555
Q ss_pred CccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCc
Q 044724 334 QGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413 (782)
Q Consensus 334 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 413 (782)
+ .++ .+.. +++|++|++++|.+++..| +. .+++|++|++++|++++. ..+..+++|++|++++|.
T Consensus 190 ~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~--~~--------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 190 S-DIS-VLAK-LTNLESLIATNNQISDITP--LG--------ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp C-CCG-GGGG-CTTCSEEECCSSCCCCCGG--GG--------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred C-CCh-hhcc-CCCCCEEEecCCccccccc--cc--------ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence 4 222 2333 5555555555555554333 11 345555555555555432 234555555555555555
Q ss_pred ccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCc
Q 044724 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493 (782)
Q Consensus 414 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~ 493 (782)
+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|++|++++|+
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----------GGGCTTCSEEECCSSC
T ss_pred cccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----------hcCCCCCCEEECcCCc
Confidence 554333 5555555555555555554322 4555555555555555553211 3445555555555555
Q ss_pred ceeecCccccCCCCCCEEEccCCcCCC
Q 044724 494 LEGEVPVQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 494 l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
+++..| +..+++|+.|++++|++++
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCchh--hccCccCCEeECCCCccCC
Confidence 554433 4455555555555555543
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-35 Score=325.72 Aligned_cols=345 Identities=23% Similarity=0.315 Sum_probs=271.6
Q ss_pred CCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc
Q 044724 67 GRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146 (782)
Q Consensus 67 ~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 146 (782)
.+++.|+++++.+.... .+..+++|++|+|++|.+++..+ +.++++|++|++++|.+++..+ +
T Consensus 46 ~~l~~L~l~~~~i~~l~-------~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~~~~--~ 108 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-------GVEYLNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--L 108 (466)
T ss_dssp HTCCEEECCSSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred ccccEEecCCCCCccCc-------chhhhcCCCEEECCCCccCCchh--------hhccccCCEEECCCCccccChh--h
Confidence 36899999988764322 26789999999999999986533 8899999999999999997655 9
Q ss_pred CCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcC
Q 044724 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM 226 (782)
Q Consensus 147 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l 226 (782)
+++++|++|++++|.++ .++ .+..+++|++|++++|.+.+. + .+..+++|++|++++ ...+..+ +
T Consensus 109 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~---~~~~~~~--~---- 173 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLSFGN---QVTDLKP--L---- 173 (466)
T ss_dssp TTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEEEEE---SCCCCGG--G----
T ss_pred cCCCCCCEEECCCCCCC-CCh--HHcCCCCCCEEECCCCccCCC--h-hhccCCcccEeecCC---cccCchh--h----
Confidence 99999999999999998 566 489999999999999999886 3 588999999999964 2222111 2
Q ss_pred CCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724 227 PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306 (782)
Q Consensus 227 ~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 306 (782)
..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+.+..
T Consensus 174 ---------------~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~-------------------- 215 (466)
T 1o6v_A 174 ---------------ANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNNQISDIT-------------------- 215 (466)
T ss_dssp ---------------TTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG--------------------
T ss_pred ---------------ccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCCcccccc--------------------
Confidence 235566666677776653 22 3667777777777777665431
Q ss_pred CCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEcc
Q 044724 307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE 386 (782)
Q Consensus 307 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~ 386 (782)
+ ++.+++|+.|++++|.+++ ++ .+.. +++|+.|++++|.+++..+ +. .+++|++|+++
T Consensus 216 -------~--~~~l~~L~~L~l~~n~l~~-~~-~l~~-l~~L~~L~l~~n~l~~~~~--~~--------~l~~L~~L~l~ 273 (466)
T 1o6v_A 216 -------P--LGILTNLDELSLNGNQLKD-IG-TLAS-LTNLTDLDLANNQISNLAP--LS--------GLTKLTELKLG 273 (466)
T ss_dssp -------G--GGGCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCCCGG--GT--------TCTTCSEEECC
T ss_pred -------c--ccccCCCCEEECCCCCccc-ch-hhhc-CCCCCEEECCCCccccchh--hh--------cCCCCCEEECC
Confidence 1 3356788888888888873 43 4544 7899999999998876544 33 68889999999
Q ss_pred CccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC
Q 044724 387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466 (782)
Q Consensus 387 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 466 (782)
+|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +..+++|++|++++|++++.
T Consensus 274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 999886544 7888999999999999986544 7888999999999999987665 77889999999999998864
Q ss_pred CCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521 (782)
Q Consensus 467 p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 521 (782)
..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 347 ---------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 ---------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ---------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ---------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 246788999999999999987776 78899999999999998863
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=305.96 Aligned_cols=177 Identities=23% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
+..+++|++|++++|.+++..|..+.. +++|++|++++|.++...+..+. ++++|++|++++|.+++..+.
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~--------~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCBCCTT
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEECCCCccCcCCHHHhc--------CCCCCcEEECCCCccCccChh
Confidence 334455555555555555333333333 45555555555555432222222 345555555555555544444
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 476 (782)
.+..+++|++|++++|++++. .+..+++|++|++++|.+++. ...++|++|++++|.++.. |.
T Consensus 160 ~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~-------- 222 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG-------- 222 (390)
T ss_dssp TTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--------
T ss_pred hccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--------
Confidence 455555555555555554432 133344444555554444321 1223444444444444432 11
Q ss_pred hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC
Q 044724 477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523 (782)
Q Consensus 477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 523 (782)
...++|++|++++|++++. ..+..+++|++|++++|++++..|
T Consensus 223 --~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 223 --PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp --CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred --cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 1123444444444444422 234444444444444444444333
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-33 Score=320.86 Aligned_cols=335 Identities=19% Similarity=0.206 Sum_probs=244.4
Q ss_pred CCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCC
Q 044724 244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSL 323 (782)
Q Consensus 244 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 323 (782)
+++++.+++++|.+. .+|+..+.++++|++|++++|.+.+. .+..+..+++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~L 101 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI---------------------------DTYAFAYAHTI 101 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEE---------------------------CTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCC---------------------------ChHHhcCCCCC
Confidence 355667777777765 45655566677777777777666543 23345567788
Q ss_pred cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL 403 (782)
Q Consensus 324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (782)
++|++++|.+++..|..+.. +++|++|++++|.+++..+..|. ++++|++|++++|.+++..|..|..+++
T Consensus 102 ~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 102 QKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CEEECCCCcCCCCCHHHHcC-CCCCCEEEeeCCCCCCCCHHHhc--------cCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 88888888888544444444 78888888888888755554444 6788888888888888777777888888
Q ss_pred CcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCC
Q 044724 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483 (782)
Q Consensus 404 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~ 483 (782)
|++|++++|.+++.. +..+++|++|++++|.+++. ...++|+.|++++|.++...+. ..++
T Consensus 173 L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-----------~~~~ 233 (597)
T 3oja_B 173 LQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-----------VNVE 233 (597)
T ss_dssp CCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-----------CCSC
T ss_pred CcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc-----------cCCC
Confidence 888888888887542 45677888888888877642 3446788888888888754331 2367
Q ss_pred CCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccc
Q 044724 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSH 563 (782)
Q Consensus 484 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (782)
|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..+..
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 276 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK----------------------------------- 276 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT-----------------------------------
T ss_pred CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC-----------------------------------
Confidence 8888888888875 356778888888888888888777766644
Q ss_pred cEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcc
Q 044724 564 EIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643 (782)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 643 (782)
+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++
T Consensus 277 ------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 277 ------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp ------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred ------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 4568888888888885 4666777888888888888888 5777788888888888888888
Q ss_pred ccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 644 NGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 644 ~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
++. | +..+++|++|++++|++++..+ ...+..+....+.+++..|+.+
T Consensus 337 ~~~-~--~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 337 VTL-K--LSTHHTLKNLTLSHNDWDCNSL--RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCC-C--CCTTCCCSEEECCSSCEEHHHH--HHHTTTCCTTTBCCCCCCCCTT
T ss_pred CCc-C--hhhcCCCCEEEeeCCCCCChhH--HHHHHHHhhhccccccccCCcc
Confidence 754 3 5667788888888888887543 3445666667778888888753
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=306.10 Aligned_cols=293 Identities=20% Similarity=0.219 Sum_probs=224.3
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+. ++++|++|++++|.++...+.
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~l~~~ 135 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQ--------NVPLLTVLVLERNDLSSLPRG 135 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCCCCTT
T ss_pred hcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhc--------CCCCCCEEECCCCccCcCCHH
Confidence 445677777777777777443444444 77788888888777766666555 677788888888877755444
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 476 (782)
.|..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++.
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~----------- 201 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----------- 201 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----------
T ss_pred HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----------
Confidence 567777788888888877777677777777788888887777754 245567777788877777642
Q ss_pred hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724 477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK 556 (782)
Q Consensus 477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (782)
...++|++|++++|.++.. |.. ..++|+.|++++|++++. ..+.
T Consensus 202 --~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~----------------------------- 245 (390)
T 3o6n_A 202 --AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL----------------------------- 245 (390)
T ss_dssp --ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG-----------------------------
T ss_pred --CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc-----------------------------
Confidence 2335678888888887754 322 246788888888887753 2222
Q ss_pred ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636 (782)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 636 (782)
.+++|+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|
T Consensus 246 ------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 246 ------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 300 (390)
T ss_dssp ------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred ------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence 15689999999999999999999999999999999999995 57777899999999
Q ss_pred ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
++++|+++ .+|..+..+++|++|++++|++++.. ...+++++.+++.+||+.|+|..
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH
Confidence 99999999 67888999999999999999998763 45678999999999999997643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-33 Score=320.61 Aligned_cols=293 Identities=20% Similarity=0.219 Sum_probs=228.8
Q ss_pred CCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP 395 (782)
Q Consensus 316 ~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~ 395 (782)
.+..+++|+.|++++|.+++..|..+.. +++|++|++++|.+++..|..|. ++++|++|++++|.+++..+
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQ--------NVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCCCCT
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHc--------CCCCCCEEEeeCCCCCCCCH
Confidence 3445677888888888877555545554 77888888888887776666655 67788888888888776555
Q ss_pred ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724 396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475 (782)
Q Consensus 396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 475 (782)
..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+++.
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l---------- 207 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL---------- 207 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE----------
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc----------
Confidence 55677788888888888887777777777888888888888777642 45567778888888877642
Q ss_pred hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccc
Q 044724 476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE 555 (782)
Q Consensus 476 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (782)
...++|+.|++++|.++...+.. .++|+.|+|++|.+++. ..+..
T Consensus 208 ---~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~--------------------------- 252 (597)
T 3oja_B 208 ---AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN--------------------------- 252 (597)
T ss_dssp ---ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG---------------------------
T ss_pred ---cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc---------------------------
Confidence 23456888888888877443322 35788888888887752 22222
Q ss_pred cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN 635 (782)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 635 (782)
+++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..++.+++|+.
T Consensus 253 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 253 --------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp --------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred --------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 5689999999999999999999999999999999999996 5777888999999
Q ss_pred EecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 636 LDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 636 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
|+|++|+++ .+|..+..+++|++|++++|++++.. ...++++..+++.+||+.|+|.
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 999999999 68888999999999999999998763 4567889999999999999763
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-31 Score=285.29 Aligned_cols=263 Identities=23% Similarity=0.332 Sum_probs=148.1
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
+..+++|++|++++|.++ .+| .+.. +++|++|++++|.+++..+ +. .+++|++|++++|.....++
T Consensus 84 ~~~l~~L~~L~L~~n~i~-~~~-~~~~-l~~L~~L~l~~n~i~~~~~--~~--------~l~~L~~L~l~~n~~~~~~~- 149 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKIT-DIS-ALQN-LTNLRELYLNEDNISDISP--LA--------NLTKMYSLNLGANHNLSDLS- 149 (347)
T ss_dssp GTTCTTCCEEECCSSCCC-CCG-GGTT-CTTCSEEECTTSCCCCCGG--GT--------TCTTCCEEECTTCTTCCCCG-
T ss_pred hhcCCcCCEEEccCCccc-Cch-HHcC-CCcCCEEECcCCcccCchh--hc--------cCCceeEEECCCCCCccccc-
Confidence 345566666666666665 333 3333 5666666666666654322 22 46666666666664443333
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 476 (782)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+
T Consensus 150 ~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------- 216 (347)
T 4fmz_A 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--------- 216 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---------
T ss_pred chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---------
Confidence 35666666666666666654332 5566666666666666654322 5566666666666666653211
Q ss_pred hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724 477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK 556 (782)
Q Consensus 477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (782)
+..+++|++|++++|++++..+ +..+++|++|++++|++++. + .+..
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~---------------------------- 263 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVKD---------------------------- 263 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTT----------------------------
T ss_pred -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHhc----------------------------
Confidence 4455666666666666654332 55666666666666665532 1 1111
Q ss_pred ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636 (782)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 636 (782)
+++|+.|++++|++++. +.+..+++|+.|++++|++++..|..|+.+++|+.|
T Consensus 264 -------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 264 -------------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp -------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred -------------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 34566666666666543 345666666666666666666666666666666666
Q ss_pred ecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724 637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 668 (782)
++++|++++..| +..+++|++|++++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666665444 556666666666666553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4.3e-31 Score=283.48 Aligned_cols=284 Identities=22% Similarity=0.362 Sum_probs=243.0
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
+..+++|++|++++|+++ .+|. +.. +++|++|++++|.+++. +.+. .+++|++|++++|.+++..+
T Consensus 62 ~~~~~~L~~L~l~~n~i~-~~~~-~~~-l~~L~~L~L~~n~i~~~--~~~~--------~l~~L~~L~l~~n~i~~~~~- 127 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQIT-DISP-LSN-LVKLTNLYIGTNKITDI--SALQ--------NLTNLRELYLNEDNISDISP- 127 (347)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC--GGGT--------TCTTCSEEECTTSCCCCCGG-
T ss_pred hhhcCCccEEEccCCccc-cchh-hhc-CCcCCEEEccCCcccCc--hHHc--------CCCcCCEEECcCCcccCchh-
Confidence 556889999999999998 5655 554 89999999999998753 2344 79999999999999986533
Q ss_pred cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476 (782)
Q Consensus 397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 476 (782)
+..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. +
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~--------- 193 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-S--------- 193 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-G---------
T ss_pred -hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-c---------
Confidence 8899999999999997665444 48999999999999999986544 88999999999999999853 3
Q ss_pred hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724 477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK 556 (782)
Q Consensus 477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (782)
.+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..
T Consensus 194 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~---------------------------- 241 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN---------------------------- 241 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------
T ss_pred cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc----------------------------
Confidence 36788999999999999986554 8889999999999999986433 221
Q ss_pred ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636 (782)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 636 (782)
+++|+.|++++|.+++. +.+..+++|+.|++++|++++. ..+..+++|+.|
T Consensus 242 -------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 292 (347)
T 4fmz_A 242 -------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292 (347)
T ss_dssp -------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred -------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence 56899999999999864 5789999999999999999965 468999999999
Q ss_pred ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCC
Q 044724 637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691 (782)
Q Consensus 637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~ 691 (782)
++++|++++..|..+..+++|++|++++|++++..| ...+++++.+++.+|+.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 999999999999999999999999999999998777 67899999999999974
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.3e-31 Score=280.57 Aligned_cols=288 Identities=19% Similarity=0.273 Sum_probs=177.8
Q ss_pred CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
+++.++++++.++ .+|..+ .++++.|++++|.+++..+..+. ++++|++|++++|.+++..|..|..+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTT--------TCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhc--------cCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 5667777777666 566544 24677777777777665555554 56777777777777776666667777
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCccee--eCCCCccccchhhhc
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPSCFHLLSIEQIN 479 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~ 479 (782)
++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|+++. ..+ ..+.
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~ 168 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN--------GAFQ 168 (330)
T ss_dssp TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT--------TGGG
T ss_pred CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh--------hhcc
Confidence 77777777777766 3444333 567777777777766666666677777777777776642 333 3455
Q ss_pred CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
++++|++|++++|+++. +|..+. ++|++|++++|++++..|..+..
T Consensus 169 ~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------- 214 (330)
T 1xku_A 169 GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------- 214 (330)
T ss_dssp GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------
T ss_pred CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------
Confidence 66667777777776663 443332 56667777777666555544432
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecC
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 639 (782)
+++|+.|++++|.+++..|..+..+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus 215 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 215 ----------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ----------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred ----------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 345666677777666666666666666777777777666 566666666677777777
Q ss_pred CCccccCCchhhhc------CCCCcEEEcccCcCcc--cCCCCccccCCCCcccccCC
Q 044724 640 YNKLNGKIPRQLVE------LNAFVVFSFACNNLSG--KIPELTAQFATFNESSYKGN 689 (782)
Q Consensus 640 ~N~l~~~ip~~l~~------l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~~~gN 689 (782)
+|++++..+..|.. .+.|+.+++++|++.. ..|..+..+.+++.+++++|
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 77766555555533 2556666666666643 23333444445555555555
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.6e-31 Score=282.05 Aligned_cols=288 Identities=19% Similarity=0.274 Sum_probs=191.5
Q ss_pred CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..|..+. ++++|++|++++|.+++..|..|..+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFK--------GLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhh--------CCCCCcEEECCCCccCccCHhHhhCc
Confidence 5777777777777 677655 35777777777777766666655 67777777777777777767777777
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCccee--eCCCCccccchhhhc
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPSCFHLLSIEQIN 479 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~ 479 (782)
++|++|++++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..| ..+.
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~ 170 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP--------GAFD 170 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT--------TSSC
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc--------cccc
Confidence 77777777777776 4444443 677777777777776666667777777777777777752 334 3344
Q ss_pred CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
.+ +|++|++++|++++ +|..+. ++|++|++++|++++..|..+..
T Consensus 171 ~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------- 215 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------- 215 (332)
T ss_dssp SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------
T ss_pred CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------
Confidence 44 67777777777764 444433 56777777777776655544432
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecC
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 639 (782)
+++|+.|++++|++++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus 216 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 216 ----------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp ----------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred ----------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 345677777777777666666777777777777777777 566667777777777777
Q ss_pred CCccccCCchhhhcC------CCCcEEEcccCcCc--ccCCCCccccCCCCcccccCCC
Q 044724 640 YNKLNGKIPRQLVEL------NAFVVFSFACNNLS--GKIPELTAQFATFNESSYKGNP 690 (782)
Q Consensus 640 ~N~l~~~ip~~l~~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~~~gNp 690 (782)
+|++++..+..|... ..|+.+++++|++. +..|..+..+..++.+++.+|.
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777776555555442 45677777777766 4455545556666666666653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-30 Score=276.61 Aligned_cols=268 Identities=25% Similarity=0.324 Sum_probs=224.1
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++++.|++++|.+++..|..+.. +++|++|++++|.+++..|..+. ++++|++|++++|.++ .+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~-~l~~~~~- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFS--------PLRKLQKLYISKNHLV-EIPPNLP- 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGST--------TCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred CCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhh--------CcCCCCEEECCCCcCC-ccCcccc-
Confidence 57888999999888554555655 88999999999998887777776 7899999999999988 4555444
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccc--cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 478 (782)
++|++|++++|++++..+..|.++++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|.. +
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~--------~ 191 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD--------L 191 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS--------S
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc--------c
Confidence 78999999999999777778999999999999999986 4678888888 89999999999985 5632 2
Q ss_pred cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV 558 (782)
Q Consensus 479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (782)
.++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 192 --~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------ 239 (332)
T 2ft3_A 192 --PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF------------------------------ 239 (332)
T ss_dssp --CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG------------------------------
T ss_pred --cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC------------------------------
Confidence 278999999999999888889999999999999999999877665543
Q ss_pred ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC------CC
Q 044724 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL------EA 632 (782)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~ 632 (782)
+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|... ..
T Consensus 240 -----------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 240 -----------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp -----------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred -----------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 557999999999999 788889999999999999999998887777654 67
Q ss_pred CCEEecCCCccc--cCCchhhhcCCCCcEEEcccCc
Q 044724 633 YRNLDLSYNKLN--GKIPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 633 L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 666 (782)
|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999998 6788889999999999999884
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.1e-30 Score=272.94 Aligned_cols=269 Identities=22% Similarity=0.300 Sum_probs=225.7
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++++.|++++|++++..+..+.. +++|++|++++|.+++..|..+. ++++|++|++++|.++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~-~l~~~~~- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFA--------PLVKLERLYLSKNQLK-ELPEKMP- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCBCTTTTT--------TCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred CCCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCeeCHHHhc--------CCCCCCEEECCCCcCC-ccChhhc-
Confidence 57889999999998544445555 89999999999999887787776 7899999999999988 4555444
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCcccc--CCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEG--PIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 478 (782)
++|++|++++|.+++..+..+.++++|++|++++|.++. ..+..+.++++|++|++++|+++. +|.. +
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--------~ 190 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--------L 190 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--------C
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcc--------c
Confidence 689999999999998888889999999999999999863 778889999999999999999984 5632 2
Q ss_pred cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV 558 (782)
Q Consensus 479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (782)
.++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 191 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------ 238 (330)
T 1xku_A 191 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------ 238 (330)
T ss_dssp --CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------
T ss_pred --cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------
Confidence 278999999999999888899999999999999999998876655543
Q ss_pred ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC------CC
Q 044724 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL------EA 632 (782)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~ 632 (782)
+++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|... ..
T Consensus 239 -----------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 239 -----------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp -----------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred -----------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 457999999999999 788899999999999999999998877777543 78
Q ss_pred CCEEecCCCcccc--CCchhhhcCCCCcEEEcccCc
Q 044724 633 YRNLDLSYNKLNG--KIPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 633 L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 666 (782)
|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999874 667889999999999999985
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=8e-32 Score=285.75 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=98.0
Q ss_pred CCCCcHHHHHHHHHhHhcCC-CCCCCcCCCCC-CCCCCCCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccC
Q 044724 17 SEGCLDHERFALLQLKHFFN-DPVNYLHDWVD-AKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTP 94 (782)
Q Consensus 17 ~~~~~~~~~~aLl~~k~~~~-~~~~~l~~W~~-~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~ 94 (782)
...+..+|++||++||+++. |+.+.+++|.. .....++|.|.|+.|+..... .. ...
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~-------------l~--------~~~ 79 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL-------------LE--------DAT 79 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH-------------HH--------HHT
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHH-------------Hh--------ccc
Confidence 45677899999999999985 77667788941 011578999999999631100 00 012
Q ss_pred CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724 95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF 174 (782)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 174 (782)
.+++++|+|++|.++ .+|.. +.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|. .+.++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~------l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQ------AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSC------GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGC
T ss_pred ccceeEEEccCCCch-hcChh------hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcC
Confidence 456677777777776 33332 666777778888777777 66777777777777777777777 6775 67777
Q ss_pred CCCCEEEcccCCCCCc
Q 044724 175 NNLEVLDMKRNEIDNL 190 (782)
Q Consensus 175 ~~L~~L~Ls~n~l~~~ 190 (782)
++|++|++++|++.+.
T Consensus 150 ~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 150 NRLRELSIRACPELTE 165 (328)
T ss_dssp TTCCEEEEEEETTCCC
T ss_pred cCCCEEECCCCCCccc
Confidence 7777777777666554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.7e-34 Score=317.48 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=59.6
Q ss_pred CCCCCCCcEEEccCCcCCccCChhhhhc----CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc
Q 044724 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG 392 (782)
Q Consensus 317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~ 392 (782)
+..+++|++|++++|.+++..+..+... .++|++|++++|.+++.....+. ..+..+++|++|++++|.+++
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~----~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA----SVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH----HHHHHCTTCCEEECCSSBCHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH----HHHhhCCCCCEEECcCCCcch
Confidence 4456678888888887765444444332 23567777776666543221111 011134556666666665554
Q ss_pred cCCcccc-----CCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccc
Q 044724 393 EIPQSLS-----KCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLE 439 (782)
Q Consensus 393 ~~~~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 439 (782)
..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 3222222 133555555555555432 2334444455555555555444
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3e-33 Score=312.71 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=136.7
Q ss_pred CCCCcEEEccCCcCCccC----ChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc--
Q 044724 320 HKSLRLLDVSNNNFQGCI----PVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE-- 393 (782)
Q Consensus 320 ~~~L~~L~Ls~n~l~~~i----p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~-- 393 (782)
.++|++|++++|.+++.. +..+.. +++|++|++++|.+++..+..+...++. ..++|++|++++|.+++.
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~---~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELTVSNNDINEAGVRVLCQGLKD---SPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHHH---SCCCCCEEECTTSCCBTTHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEECcCCCcchHHHHHHHHHHhc---CCCCceEEEccCCCCcHHHH
Confidence 457999999999998643 444444 7999999999999876544443321111 356899999999999864
Q ss_pred --CCccccCCCCCcEEECcCCcccccC-----CccccCcCCCCEEeCCCCccccC----CChhccCCCCCceEeccCCcc
Q 044724 394 --IPQSLSKCFLLKGLYLNNNNLSGKI-----PQWLGNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDISDNNI 462 (782)
Q Consensus 394 --~~~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l 462 (782)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 4667778899999999999987543 22333578899999999988764 566677788888888888887
Q ss_pred eeeCCCCccccchhhh-cCCCCCCEEEcCCCcceee----cCccccCCCCCCEEEccCCcCCCcC
Q 044724 463 SGSLPSCFHLLSIEQI-NGLSGLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNNLHGLI 522 (782)
Q Consensus 463 ~~~~p~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~ 522 (782)
++..+..+. ..+ ...++|++|++++|.+++. ++..+..+++|++|++++|++++..
T Consensus 297 ~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 297 GDEGARLLC----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHHHHH----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred chHHHHHHH----HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 654332111 111 1235788888888877654 3455666677777777777766443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=276.41 Aligned_cols=247 Identities=23% Similarity=0.211 Sum_probs=128.1
Q ss_pred CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724 348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427 (782)
Q Consensus 348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 427 (782)
...++.++..++ .+|..+ .++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~----------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI----------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC----------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCEEEeCCCCcC-cCCCCC----------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 445555555554 333322 145566666666666555556666666666666666666555555666666
Q ss_pred CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCccccCCC
Q 044724 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLCGLN 506 (782)
Q Consensus 428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 506 (782)
|++|++++|++++..+..|..+++|++|++++|+++...+ ..|..+++|++|++++| .+....+..|.+++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS--------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH--------HHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 6666666666665555555556666666666666554333 33455555556665553 23333333455555
Q ss_pred CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724 507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS 586 (782)
Q Consensus 507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 586 (782)
+|++|++++|+++. +|. +.. +++|+
T Consensus 186 ~L~~L~L~~n~l~~-~~~-~~~-----------------------------------------------------l~~L~ 210 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE-IPN-LTP-----------------------------------------------------LIKLD 210 (440)
T ss_dssp SCCEEECTTSCCSS-CCC-CTT-----------------------------------------------------CSSCC
T ss_pred ccCeecCCCCcCcc-ccc-cCC-----------------------------------------------------CcccC
Confidence 55555555555542 121 100 23445
Q ss_pred eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724 587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 666 (782)
.|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 55555555554444555555555555555555554444445555555555555555554444444444444444444444
Q ss_pred Cc
Q 044724 667 LS 668 (782)
Q Consensus 667 l~ 668 (782)
+.
T Consensus 291 ~~ 292 (440)
T 3zyj_A 291 WN 292 (440)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.3e-29 Score=277.00 Aligned_cols=247 Identities=21% Similarity=0.207 Sum_probs=134.6
Q ss_pred CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724 348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427 (782)
Q Consensus 348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 427 (782)
...++.++..++ .+|..+ .+++++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~----------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI----------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC----------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCCcC-ccCCCC----------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 445666555554 233322 145666666666666665666666666666666666666555566666666
Q ss_pred CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCccccCCC
Q 044724 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLCGLN 506 (782)
Q Consensus 428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 506 (782)
|++|+|++|++++..+..|..+++|++|++++|+++...+ ..+..+++|++|++++| .+....+..|.+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS--------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH--------hHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 6666666666665555556666666666666666654333 34455566666666653 33333333455555
Q ss_pred CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724 507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS 586 (782)
Q Consensus 507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 586 (782)
+|++|++++|++++. |. +. .+++|+
T Consensus 197 ~L~~L~L~~n~l~~~-~~-~~-----------------------------------------------------~l~~L~ 221 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM-PN-LT-----------------------------------------------------PLVGLE 221 (452)
T ss_dssp TCCEEECTTSCCSSC-CC-CT-----------------------------------------------------TCTTCC
T ss_pred CCCEEECCCCccccc-cc-cc-----------------------------------------------------cccccc
Confidence 666666666555532 21 10 033455
Q ss_pred eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724 587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 666 (782)
.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|+
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 55555555555555555555555555555555555555555555555555555555554444444555555555555554
Q ss_pred Cc
Q 044724 667 LS 668 (782)
Q Consensus 667 l~ 668 (782)
+.
T Consensus 302 ~~ 303 (452)
T 3zyi_A 302 WN 303 (452)
T ss_dssp EE
T ss_pred cC
Confidence 44
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=273.22 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=226.9
Q ss_pred CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc
Q 044724 320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS 399 (782)
Q Consensus 320 ~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 399 (782)
|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+. ++++|++|++++|.+++..+..|.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ--------RCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc--------cCCCCCEEECCCCccCccCHhhcC
Confidence 455566899999998 8888664 5899999999999877666666 789999999999999988888899
Q ss_pred CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCC-hhccCCCCCceEeccCCc-ceeeCCCCccccchhh
Q 044724 400 KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP-VEFCQLDWLQILDISDNN-ISGSLPSCFHLLSIEQ 477 (782)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~ 477 (782)
.+++|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++|+ +++..| ..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~ 169 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------KD 169 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------TT
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--------HH
Confidence 99999999999999997666668999999999999999986554 578899999999999994 665555 56
Q ss_pred hcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccc
Q 044724 478 INGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKK 557 (782)
Q Consensus 478 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (782)
++++++|++|++++|++++..|..+..+++|++|++++|+++. +|..+.
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~------------------------------ 218 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV------------------------------ 218 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH------------------------------
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhh------------------------------
Confidence 7889999999999999998889999999999999999999853 222211
Q ss_pred cccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc---cccccceeecccccccc----cCCccccCC
Q 044724 558 VEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG---NLTRIQILNLSHNNLTG----TIPSTFSKL 630 (782)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l 630 (782)
..+++|+.|++++|.+++..+..+. ....++.++|+++.+++ .+|..++.+
T Consensus 219 ----------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 219 ----------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp ----------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred ----------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 1156789999999999876655443 35667778888887775 467788888
Q ss_pred CCCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCcccCCC
Q 044724 631 EAYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 631 ~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
++|++||+++|+++ .+|.. |..+++|++|++++|++++..|.
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 89999999999988 45555 58888899999999888887664
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.3e-29 Score=262.78 Aligned_cols=250 Identities=23% Similarity=0.283 Sum_probs=154.4
Q ss_pred cEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccccc--CCccccCcC
Q 044724 349 SCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK--IPQWLGNLT 426 (782)
Q Consensus 349 ~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~ 426 (782)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..|..+++|++|++++|.++.. .+..+..++
T Consensus 10 ~~l~c~~~~l~-~ip~~~----------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TEEECCSSCCS-SCCSCC----------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CEEEcCCCCcc-cCCCCC----------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 45666666665 233322 24677777777777644444566677777777777776632 245555666
Q ss_pred CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN 506 (782)
Q Consensus 427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 506 (782)
+|++|++++|.+++ +|..+..+++|++|++++|++++..+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT-------TTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc-------hhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 77777777776663 455566667777777777766643321 2345666677777777766666666666666
Q ss_pred CCCEEEccCCcCCC-cCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724 507 QLQLLDLSDNNLHG-LIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL 585 (782)
Q Consensus 507 ~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 585 (782)
+|++|++++|.+++ .+|..+.. +++|
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------------------l~~L 177 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTE-----------------------------------------------------LRNL 177 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTT-----------------------------------------------------CTTC
T ss_pred CCCEEECCCCccccccchhHHhh-----------------------------------------------------CcCC
Confidence 67777766666654 33433322 3456
Q ss_pred ceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC-CCcEEEccc
Q 044724 586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN-AFVVFSFAC 664 (782)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~ 664 (782)
+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 6666666666666666666666666666666666665555666666666666666666666666666663 666666666
Q ss_pred CcCccc
Q 044724 665 NNLSGK 670 (782)
Q Consensus 665 N~l~~~ 670 (782)
|++++.
T Consensus 258 N~~~~~ 263 (306)
T 2z66_A 258 NDFACT 263 (306)
T ss_dssp CCEECS
T ss_pred CCeecc
Confidence 666553
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=272.27 Aligned_cols=281 Identities=19% Similarity=0.241 Sum_probs=238.4
Q ss_pred CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccC
Q 044724 345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424 (782)
Q Consensus 345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 424 (782)
++.....+.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..|..|.+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL----------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCeEeeCCCCCcc-cccccc----------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 566677899999987 455543 258999999999999877778999999999999999999888899999
Q ss_pred cCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCcccc
Q 044724 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLC 503 (782)
Q Consensus 425 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 503 (782)
+++|++|++++|++++..+..|.++++|++|++++|++++ +|.. ..+..+++|++|++++| .+++..+..+.
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSS------CSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCch------hhhccCCCCcEEECCCCccccccCHHHcc
Confidence 9999999999999997766779999999999999999984 5520 14678999999999999 57777788999
Q ss_pred CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhc
Q 044724 504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS 583 (782)
Q Consensus 504 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (782)
++++|++|++++|++++..|..+.. ++
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~-----------------------------------------------------l~ 198 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKS-----------------------------------------------------IQ 198 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTT-----------------------------------------------------CS
T ss_pred CCCCCCEEECCCCCcCccCHHHHhc-----------------------------------------------------cc
Confidence 9999999999999999887776654 45
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCcccc---CCCCCCEEecCCCcccc----CCchhhhcCCC
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS---KLEAYRNLDLSYNKLNG----KIPRQLVELNA 656 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~----~ip~~l~~l~~ 656 (782)
+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+. ....++.+++++|.+++ .+|+.+..+++
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 799999999999754444456789999999999999987666544 46789999999999986 47888999999
Q ss_pred CcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 657 FVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 657 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
|++|++++|+++...+..+..+++++.+++.+||+.|+|+
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999996554545788999999999999999985
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.1e-29 Score=262.21 Aligned_cols=276 Identities=23% Similarity=0.260 Sum_probs=224.2
Q ss_pred cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc--CCccccCC
Q 044724 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE--IPQSLSKC 401 (782)
Q Consensus 324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l 401 (782)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..|. ++++|++|++++|.++.. .+..+..+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFD--------KLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTT--------TCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhh--------ccccCCEEECCCCccCcccCcccccccc
Confidence 57888888887 788755 36889999999988854444455 788999999999988743 35667778
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCC-hhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..| ..+..
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~ 148 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNG 148 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------TTTTT
T ss_pred cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------hhccc
Confidence 89999999999998 567778899999999999999987665 678899999999999999998777 56778
Q ss_pred CCCCCEEEcCCCccee-ecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------- 197 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------------- 197 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------------
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-------------------------------
Confidence 8999999999999986 67888999999999999999999877766543
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCC-CCCEEec
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE-AYRNLDL 638 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~LdL 638 (782)
+++|+.|++++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|
T Consensus 198 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 198 ----------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp ----------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred ----------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 45799999999999988888899999999999999999999999999984 9999999
Q ss_pred CCCccccCCch--hhhcCCCCcEEEcccCcCcccCCC
Q 044724 639 SYNKLNGKIPR--QLVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 639 s~N~l~~~ip~--~l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
++|++++..+. ...-+...+.+.+..+++.+..|.
T Consensus 256 ~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 256 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred cCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 99999875331 112222333445556666666665
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.6e-29 Score=262.03 Aligned_cols=234 Identities=20% Similarity=0.296 Sum_probs=183.9
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 456 (782)
.+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 356677777777776 55666666777777777777777 66777777777777777777777 5677777777777777
Q ss_pred ccCCcceeeCCCCccccch-hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccc
Q 044724 457 ISDNNISGSLPSCFHLLSI-EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY 535 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 535 (782)
+++|++.+.+|..+..... ..+.++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------
Confidence 7777777777754322111 23456888999999999988 778888899999999999999885 4444433
Q ss_pred cCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecc
Q 044724 536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS 615 (782)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 615 (782)
+++|+.|++++|++.+.+|..++.+++|+.|+|+
T Consensus 228 ----------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 228 ----------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp ----------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred ----------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 5578899999999999999999999999999999
Q ss_pred cccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724 616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 616 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 668 (782)
+|.+.+.+|..++++++|+.|+|++|++.+.+|+.+.++++|+.+++..|.+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999998877654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-27 Score=264.58 Aligned_cols=250 Identities=22% Similarity=0.222 Sum_probs=182.9
Q ss_pred CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
....++.++..++ .+|..+. ++++.|++++|.+++..+..|. ++++|++|+|++|.+++..+..|..+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFR--------HLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcC--------CCCCCCEEECCCCccCCcChhhccCc
Confidence 3456777777777 6776542 5777888888887777676666 67778888888888777777777777
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l 481 (782)
++|++|+|++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|+..+.++. ..+.++
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l 195 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-------GAFEGL 195 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------TTTTTC
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-------hhccCC
Confidence 7888888888887766666677777888888888877776666777778888888877444334443 346677
Q ss_pred CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK 561 (782)
Q Consensus 482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (782)
++|++|++++|++++. | .+..+++|+.|+|++|++++..|..+..
T Consensus 196 ~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------- 240 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------------------------------- 240 (452)
T ss_dssp TTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT---------------------------------
T ss_pred CCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC---------------------------------
Confidence 7788888888877743 3 4677777888888888777766665543
Q ss_pred cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724 562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641 (782)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 641 (782)
+++|+.|++++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 241 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 241 --------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp --------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred --------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 446777888888887777777777788888888888887777777777778888888888
Q ss_pred cccc
Q 044724 642 KLNG 645 (782)
Q Consensus 642 ~l~~ 645 (782)
.+..
T Consensus 301 p~~C 304 (452)
T 3zyi_A 301 PWNC 304 (452)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 7764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=261.44 Aligned_cols=248 Identities=25% Similarity=0.276 Sum_probs=144.3
Q ss_pred CcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCC
Q 044724 323 LRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF 402 (782)
Q Consensus 323 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 402 (782)
.+.++.++..++ .+|..+. ++++.|++++|.+++..+..|. ++++|++|+|++|.+++..+..|.+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFK--------HLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTS--------SCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhh--------CCCCCCEEECCCCcCCccChhhccCCc
Confidence 445566666665 5555442 4566666666666655555554 556666666666666655555566666
Q ss_pred CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482 (782)
Q Consensus 403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~ 482 (782)
+|++|+|++|++++..+..|..+++|++|++++|.++...+..|.++++|++|++++|+..+.++. ..|.+++
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~ 185 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-------GAFEGLS 185 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------TTTTTCS
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-------chhhccc
Confidence 666666666666655455566666666666666666655555566666666666666433333332 3445566
Q ss_pred CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724 483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562 (782)
Q Consensus 483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (782)
+|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..+..
T Consensus 186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------- 229 (440)
T 3zyj_A 186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG---------------------------------- 229 (440)
T ss_dssp SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT----------------------------------
T ss_pred ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc----------------------------------
Confidence 6666666666665 333 3555666666666666666555544432
Q ss_pred ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642 (782)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 642 (782)
+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.
T Consensus 230 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 230 -------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 3355666666666666656666666666666666666665555556666666666666666
Q ss_pred cc
Q 044724 643 LN 644 (782)
Q Consensus 643 l~ 644 (782)
+.
T Consensus 291 ~~ 292 (440)
T 3zyj_A 291 WN 292 (440)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-28 Score=252.07 Aligned_cols=209 Identities=25% Similarity=0.271 Sum_probs=114.5
Q ss_pred CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCc-ceeeCCCCccccchhhhcCC
Q 044724 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHLLSIEQINGL 481 (782)
Q Consensus 403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~~l 481 (782)
+|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|+ ++...| ..+..+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~--------~~~~~l 104 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP--------ATFHGL 104 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT--------TTTTTC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH--------HHhcCC
Confidence 45555555555554444445555555555555555555545555555555555555554 443333 334455
Q ss_pred CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK 561 (782)
Q Consensus 482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (782)
++|++|++++|++++..|..+.++++|++|++++|++++..+..+..
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------- 151 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------------------- 151 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc---------------------------------
Confidence 55555555555555544555555555555555555555433333322
Q ss_pred cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724 562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641 (782)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 641 (782)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..|+++++|+.|++++|
T Consensus 152 --------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 152 --------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp --------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 334555566666555544445566666666666666666555666666666666666666
Q ss_pred ccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672 (782)
Q Consensus 642 ~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p 672 (782)
++++..+..+..+++|++|++++|++.+..+
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6665555556666666666666666654433
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.2e-28 Score=250.62 Aligned_cols=253 Identities=22% Similarity=0.223 Sum_probs=150.9
Q ss_pred cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL 403 (782)
Q Consensus 324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (782)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+. ++++|++|++++|.+++..|..+..+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFR--------ACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcc--------cCCCCCEEECCCCccceeCHhhcCCccC
Confidence 56666666666 566543 34666666666666555444444 4555555555555555555555555555
Q ss_pred CcEEECcCCc-ccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724 404 LKGLYLNNNN-LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482 (782)
Q Consensus 404 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~ 482 (782)
|++|++++|. +....|..+..+++|++|++++|.+++..|..| ..++
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~ 129 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------------------RGLA 129 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------------------------TTCT
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--------------------------------hCCc
Confidence 5555555554 443334444444444444444444444444444 4455
Q ss_pred CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724 483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562 (782)
Q Consensus 483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (782)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 175 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------------------------------- 175 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------------------------------
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC----------------------------------
Confidence 5555555555555444444555666666666666655443333322
Q ss_pred ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642 (782)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 642 (782)
+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+
T Consensus 176 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 -------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 3456667777777776777778888888888888888887777778888888888888888
Q ss_pred cccCCchhhhcCCCCcEEEcccCcCcccCCCC
Q 044724 643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPEL 674 (782)
Q Consensus 643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~ 674 (782)
+.+..+.. .-...++.+..+.|.+.+..|..
T Consensus 237 ~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 237 WVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp EECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 88654421 11122334456778888877763
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2e-30 Score=299.44 Aligned_cols=291 Identities=13% Similarity=0.097 Sum_probs=147.4
Q ss_pred CCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCC---CccCCC--Ccc----ccccc
Q 044724 53 DCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIA---GCVENE--GAS----SREVT 123 (782)
Q Consensus 53 ~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~--~~~----~~~l~ 123 (782)
-|++|.++.+.. .+ .+.+.+. .. ......+.++++|++|+|+++... +.+|.. ++. .....
T Consensus 40 vck~W~~~~~~~--~~--~l~~~~~-~~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 109 (592)
T 3ogk_B 40 VCRRWFKIDSET--RE--HVTMALC-YT-----ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN 109 (592)
T ss_dssp SCHHHHHHHHHH--CC--EEEESCG-GG-----SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred HhHHHHHhhhcc--cc--EEEEeec-cc-----cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHh
Confidence 356899986542 22 2223221 10 012345677899999999876421 222211 000 00122
Q ss_pred CCCCCcEEeCCCCCCCCcchhhcCC-CC-CCCEEEccCCc-CcC-cCChhhhcCCCCCCEEEcccCCCCCcc---CCCCC
Q 044724 124 RLNNLKMFDLSGNSFNNSILSSLTR-LS-SVRSLKLSYNR-LEG-SIDVKEFDSFNNLEVLDMKRNEIDNLV---VPQGF 196 (782)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~~~~~~~-l~-~L~~L~Ls~n~-l~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l 196 (782)
.+++|++|+|++|.+++..+..+.. ++ +|++|+|++|. +.. .++. ...++++|++|+|++|.+++.. ++..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 6788888888888887766666655 33 48888888876 210 1111 2346788888888888765442 12233
Q ss_pred CCCCCccEEecccCccccc----ccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCC
Q 044724 197 PHFKSLEHLDMSYAHIALN----TNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRL 272 (782)
Q Consensus 197 ~~l~~L~~L~L~~n~~~~~----~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 272 (782)
..+++|++|++++ +.+. ..++..+.. ++ +|+.|++++|.+.+ ++ ..+.++++|
T Consensus 189 ~~~~~L~~L~L~~--n~~~~~~~~~l~~~~~~-~~------------------~L~~L~L~~~~~~~-l~-~~~~~~~~L 245 (592)
T 3ogk_B 189 QHNTSLEVLNFYM--TEFAKISPKDLETIARN-CR------------------SLVSVKVGDFEILE-LV-GFFKAAANL 245 (592)
T ss_dssp HHCCCCCEEECTT--CCCSSCCHHHHHHHHHH-CT------------------TCCEEECSSCBGGG-GH-HHHHHCTTC
T ss_pred hcCCCccEEEeec--cCCCccCHHHHHHHHhh-CC------------------CCcEEeccCccHHH-HH-HHHhhhhHH
Confidence 4567777777777 3333 222333333 33 33444444444442 22 235555666
Q ss_pred cEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEE
Q 044724 273 KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFN 352 (782)
Q Consensus 273 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 352 (782)
++|+++....... .+.....+..+++|+.|+++++... .+|..+.. +++|++|+
T Consensus 246 ~~L~l~~~~~~~~------------------------~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~ 299 (592)
T 3ogk_B 246 EEFCGGSLNEDIG------------------------MPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPF-AAQIRKLD 299 (592)
T ss_dssp CEEEECBCCCCTT------------------------CTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGG-GGGCCEEE
T ss_pred Hhhcccccccccc------------------------hHHHHHHhhccccccccCccccchh-HHHHHHhh-cCCCcEEe
Confidence 6666554211000 0111233445566777777665332 45544443 56666666
Q ss_pred cccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECc
Q 044724 353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLN 410 (782)
Q Consensus 353 Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 410 (782)
+++|.+++.....+ +..+++|++|+++++-..+.++.....+++|++|+++
T Consensus 300 Ls~~~l~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 300 LLYALLETEDHCTL-------IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp ETTCCCCHHHHHHH-------HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCcCCHHHHHHH-------HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 66666543322111 1145666666666222112222222345555666555
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.7e-29 Score=263.54 Aligned_cols=268 Identities=18% Similarity=0.180 Sum_probs=201.2
Q ss_pred CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401 (782)
Q Consensus 322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 401 (782)
+++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ +..+
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~~~~~--~~~l 79 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLA--------PFTKLELLNLSSNVLYETLD--LESL 79 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT--------TCTTCCEEECTTSCCEEEEE--ETTC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhh--------CCCcCCEEECCCCcCCcchh--hhhc
Confidence 4566677777765 44555555467888888888888776666665 67888888888888876554 7788
Q ss_pred CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724 402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481 (782)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l 481 (782)
++|++|++++|.+++.. ..++|++|++++|++++..+.. +++|++|++++|++++..| ..++.+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~--------~~~~~l 143 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD--------LDEGCR 143 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG--------BCTGGG
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc--------hhhhcc
Confidence 88888888888887432 3478888888888887665443 5678888888888886655 345677
Q ss_pred CCCCEEEcCCCcceeecCcccc-CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 482 SGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 482 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
++|++|++++|++++..+..+. .+++|++|++++|++++..+..
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------------------- 188 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------------------------------- 188 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------------------------
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----------------------------------
Confidence 8888888888888877766664 6788888888888887541110
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
.+++|+.|++++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++
T Consensus 189 --------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 189 --------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp --------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred --------------------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 045788888888888854 455888889999999999988 5677888888999999999
Q ss_pred Cccc-cCCchhhhcCCCCcEEEccc-CcCcccCCC
Q 044724 641 NKLN-GKIPRQLVELNAFVVFSFAC-NNLSGKIPE 673 (782)
Q Consensus 641 N~l~-~~ip~~l~~l~~L~~L~ls~-N~l~~~~p~ 673 (782)
|+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9988 77888888888888888884 456666554
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.9e-30 Score=294.90 Aligned_cols=289 Identities=12% Similarity=-0.005 Sum_probs=209.4
Q ss_pred CCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcc
Q 044724 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS 397 (782)
Q Consensus 318 ~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 397 (782)
.++++|+.|++++|.+. .+|..+.. +++|+.|+++........ +..+..+..+++|+.|+++++.. +.+|..
T Consensus 217 ~~~~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~ 288 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGM-----PEKYMNLVFPRKLCRLGLSYMGP-NEMPIL 288 (592)
T ss_dssp HHCTTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTC-----TTSSSCCCCCTTCCEEEETTCCT-TTGGGG
T ss_pred hhCCCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccch-----HHHHHHhhccccccccCccccch-hHHHHH
Confidence 45789999999999988 47766666 899999999864322111 11222334788999999988643 356777
Q ss_pred ccCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccC-----------Ccceee
Q 044724 398 LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD-----------NNISGS 465 (782)
Q Consensus 398 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-----------N~l~~~ 465 (782)
+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++ |.+++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 8889999999999999765443 3467899999999994433333445556789999999993 566543
Q ss_pred CCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccC-CCCCCEEEcc----CCcCCCcCCc-ccccccccccccCCC
Q 044724 466 LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG-LNQLQLLDLS----DNNLHGLIPP-FFYNTALHESYNNNS 539 (782)
Q Consensus 466 ~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~~p~-~~~~~~~~~~~~~~~ 539 (782)
... .....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++...+ .+...
T Consensus 369 ~~~-------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~---------- 431 (592)
T 3ogk_B 369 GLI-------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL---------- 431 (592)
T ss_dssp HHH-------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH----------
T ss_pred HHH-------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH----------
Confidence 110 22456899999999999998777767665 8999999996 5666643211 01000
Q ss_pred CCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc--cCccCCccccc-ccccceeeccc
Q 044724 540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK--LIGHIPPPIGN-LTRIQILNLSH 616 (782)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~ 616 (782)
...+++|+.|++++|. +++..+..++. +++|+.|+|++
T Consensus 432 ---------------------------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 432 ---------------------------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp ---------------------------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred ---------------------------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 0125689999998543 66655555544 88999999999
Q ss_pred ccccc-cCCccccCCCCCCEEecCCCccccC-CchhhhcCCCCcEEEcccCcCccc
Q 044724 617 NNLTG-TIPSTFSKLEAYRNLDLSYNKLNGK-IPRQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 617 N~l~~-~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
|++++ .++..+.++++|++|++++|++++. ++.....+++|++|++++|+++..
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99986 4456668899999999999998765 444556799999999999998765
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.6e-28 Score=258.90 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=116.6
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCc-ccCCCcccccccccCCCCCCCCEEEccCccccccCCcc
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD-GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS 397 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 397 (782)
..++|+.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+... .....++++|++|++++|++++.+|..
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFG-ALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHH-HHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHH-HHHhcCcCCccEEEccCCcccchhHHH
Confidence 446788888888888 788877762 888888888884 3333322100 000003677888888888887777766
Q ss_pred c--cCCCCCcEEECcCCcccccCCccccCc-----CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCc
Q 044724 398 L--SKCFLLKGLYLNNNNLSGKIPQWLGNL-----TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 470 (782)
Q Consensus 398 l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 470 (782)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|..+++|++|++++|++.+.++..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI- 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH-
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH-
Confidence 5 6777777888877777765 6666665 67777777777777666666777777777777777665431100
Q ss_pred cccchhhh--cCCCCCCEEEcCCCcceee---cCccccCCCCCCEEEccCCcCCCcC
Q 044724 471 HLLSIEQI--NGLSGLSHLILAHNNLEGE---VPVQLCGLNQLQLLDLSDNNLHGLI 522 (782)
Q Consensus 471 ~~~~~~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~ 522 (782)
..+ +.+++|++|++++|++++. ....+..+++|++|++++|++++.+
T Consensus 193 -----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 193 -----SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp -----HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred -----HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 112 4555666666666655521 1122334455555555555555443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.9e-29 Score=262.18 Aligned_cols=248 Identities=24% Similarity=0.250 Sum_probs=193.9
Q ss_pred CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccc-ccCCcccc-------CCCCCcEEECcCCcccc
Q 044724 345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFV-GEIPQSLS-------KCFLLKGLYLNNNNLSG 416 (782)
Q Consensus 345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~N~l~~ 416 (782)
.++|+.|++++|.+ .+|..+. ..|++|++++|.++ ..+|..+. .+++|++|++++|++++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~----------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFT----------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHH----------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred CCCceeEeeccccc--ccHHHHH----------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 56788889999988 6666544 22888889999884 45565554 68889999999999988
Q ss_pred cCCccc--cCcCCCCEEeCCCCccccCCChhccCC-----CCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc
Q 044724 417 KIPQWL--GNLTGLQHIIMPKNHLEGPIPVEFCQL-----DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489 (782)
Q Consensus 417 ~~p~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L 489 (782)
.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..| ..++.+++|++|++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--------EQVRVFPALSTLDL 180 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--------TTCCCCSSCCEEEC
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH--------HHhccCCCCCEEEC
Confidence 888876 8889999999999999877 7777776 889999999999987776 56678889999999
Q ss_pred CCCcceee--cCccc--cCCCCCCEEEccCCcCCCc--CCcccccccccccccCCCCCCCCccccccccccccccccccc
Q 044724 490 AHNNLEGE--VPVQL--CGLNQLQLLDLSDNNLHGL--IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSH 563 (782)
Q Consensus 490 ~~N~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (782)
++|++.+. .+..+ ..+++|++|++++|++++. ++..+.
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------------------------------------ 224 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA------------------------------------ 224 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH------------------------------------
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH------------------------------------
Confidence 99987764 23344 7888999999999988732 111110
Q ss_pred cEEEEEecCCeeeecchhhcccceeeccCCccCccCC-cccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724 564 EIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP-PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642 (782)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 642 (782)
..+++|+.||+++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|+
T Consensus 225 ----------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 225 ----------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp ----------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred ----------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 014578889999999988775 45667888999999999998 7777776 889999999999
Q ss_pred cccCCchhhhcCCCCcEEEcccCcCccc
Q 044724 643 LNGKIPRQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
|++. |. +..+++|++|++++|++++.
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9866 65 88889999999999988763
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.7e-28 Score=271.58 Aligned_cols=245 Identities=21% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI 457 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 457 (782)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 345555555555555444555555555555555555554333 5555555555555555553221 145555555
Q ss_pred cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccC
Q 044724 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN 537 (782)
Q Consensus 458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 537 (782)
++|.+++..+ ..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.+|..+..
T Consensus 107 ~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------- 166 (487)
T 3oja_A 107 ANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------- 166 (487)
T ss_dssp CSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------
T ss_pred cCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------
Confidence 5555554333 12355556666666655555555555556666666666655544443321
Q ss_pred CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccc
Q 044724 538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN 617 (782)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 617 (782)
.+++|+.|+|++|.+++..+ +..+++|+.|+|++|
T Consensus 167 -------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 167 -------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN 201 (487)
T ss_dssp -------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred -------------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCC
Confidence 03355556666666554421 224556666666666
Q ss_pred cccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc-ccCCCCccccCCCCccccc-------CC
Q 044724 618 NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS-GKIPELTAQFATFNESSYK-------GN 689 (782)
Q Consensus 618 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~~~~~-------gN 689 (782)
.+++..| .|..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..+..+.+. +|
T Consensus 202 ~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 279 (487)
T 3oja_A 202 KLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (487)
T ss_dssp CCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred CCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCC
Confidence 6664333 35566666666666666663 4555556666666666666665 3344333333333333333 67
Q ss_pred CCCCCCC
Q 044724 690 PFLCGLP 696 (782)
Q Consensus 690 p~lC~~~ 696 (782)
|+.|.++
T Consensus 280 ~~~c~~~ 286 (487)
T 3oja_A 280 EEECTVP 286 (487)
T ss_dssp SCCCSST
T ss_pred cccccCC
Confidence 7777664
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.1e-29 Score=262.71 Aligned_cols=272 Identities=19% Similarity=0.166 Sum_probs=208.8
Q ss_pred CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724 348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427 (782)
Q Consensus 348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 427 (782)
++..+++.+.+.......+. .+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQ--------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHT--------TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred eeEeeccccchhhhHHHHhc--------cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence 44556666666533333222 56789999999999998777888999999999999999986654 888999
Q ss_pred CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC
Q 044724 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ 507 (782)
Q Consensus 428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 507 (782)
|++|++++|++++.. ..++|++|++++|++++..+ ..+++|++|++++|++++..+..+..+++
T Consensus 82 L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~ 145 (317)
T 3o53_A 82 LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSR 145 (317)
T ss_dssp CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCTGGGSS
T ss_pred CCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhhhccCC
Confidence 999999999988543 34889999999999987654 24678999999999998877878888999
Q ss_pred CCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccce
Q 044724 508 LQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG 587 (782)
Q Consensus 508 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 587 (782)
|++|++++|++++..|..+.. .+++|+.
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------------~l~~L~~ 173 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAA----------------------------------------------------SSDTLEH 173 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGG----------------------------------------------------GTTTCCE
T ss_pred CCEEECCCCCCCcccHHHHhh----------------------------------------------------ccCcCCE
Confidence 999999999988765554421 1457889
Q ss_pred eeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724 588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667 (782)
Q Consensus 588 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 667 (782)
|++++|.+++. | ....+++|++|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 174 L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 174 LNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred EECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 99999999865 3 334588999999999999954 445888999999999999998 5788888899999999999999
Q ss_pred c-ccCCCCccccCCCCcccccCCCCCCCCCCCCCC
Q 044724 668 S-GKIPELTAQFATFNESSYKGNPFLCGLPLPICR 701 (782)
Q Consensus 668 ~-~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~C~ 701 (782)
+ +.+|..+..++.++.+++.+++.+.+.....|.
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence 8 666666666667777777755444443333343
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3e-25 Score=252.92 Aligned_cols=247 Identities=25% Similarity=0.331 Sum_probs=171.5
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++|+.|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++. |. .
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~-----------~l~~L~~L~Ls~N~l~~l-~~---~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV-----------LPPGLLELSIFSNPLTHL-PA---L 119 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC-----------CCTTCCEEEECSCCCCCC-CC---C
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC-----------CCCCCCEEECcCCcCCCC-CC---C
Confidence 56777777777777 5665 25777777777777763 332 356777777777777753 33 4
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|+.|++++|++++ +|.. +++|++|++++|++++. |. ..++|+.|++++|++++ +| ..
T Consensus 120 l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~-----------~~ 179 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP-----------ML 179 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-----------CC
T ss_pred CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-----------cc
Confidence 5677778888777774 4443 36777888888877753 33 34567788888887774 44 23
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
+++|+.|++++|++++ +|.. .++|+.|++++|.++. +|..
T Consensus 180 ~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~----------------------------------- 219 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----------------------------------- 219 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC-----------------------------------
T ss_pred CCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC-----------------------------------
Confidence 5778888888888774 3432 4678888888887763 2211
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++
T Consensus 220 ---------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 220 ---------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp ---------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred ---------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 2467788888888885 55 45577888888888888 4555 567888888888
Q ss_pred CccccCCchhhhcCCCCcEEEcccCcCcccCCCCcccc
Q 044724 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQF 678 (782)
Q Consensus 641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 678 (782)
|+|+ .+|..+.++++|+.|++++|++++.+|..+..+
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 8888 678888888888888888888888777644443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-27 Score=261.73 Aligned_cols=234 Identities=18% Similarity=0.170 Sum_probs=186.7
Q ss_pred CCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC
Q 044724 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT 426 (782)
Q Consensus 347 ~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 426 (782)
+|+.|++++|.+++..|..+. .+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~ 99 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLA--------PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGP 99 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGT--------TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred CccEEEeeCCcCCCCCHHHHh--------CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCC
Confidence 788888888888776666665 67888888888888876655 777888888888888887433 237
Q ss_pred CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc-CC
Q 044724 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC-GL 505 (782)
Q Consensus 427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l 505 (782)
+|++|++++|.+++..+. .+++|+.|++++|.+++..| ..++.+++|++|+|++|.+++..|..+. .+
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--------LDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG--------BCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc--------hhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 888888888888866554 35778888888888887766 4566788889999999998888887776 68
Q ss_pred CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724 506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL 585 (782)
Q Consensus 506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 585 (782)
++|++|+|++|.+++..+.. .+++|
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------------~l~~L 193 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQV-------------------------------------------------------VFAKL 193 (487)
T ss_dssp TTCCEEECTTSCCCEEECCC-------------------------------------------------------CCTTC
T ss_pred CcccEEecCCCccccccccc-------------------------------------------------------cCCCC
Confidence 89999999999888652211 05578
Q ss_pred ceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc-cCCchhhhcCCCCcEEEcc
Q 044724 586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN-GKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 663 (782)
+.|+|++|.+++.. ..+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 194 ~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 194 KTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999754 458999999999999999995 7888999999999999999998 7788888889888888886
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-25 Score=232.60 Aligned_cols=227 Identities=23% Similarity=0.277 Sum_probs=144.2
Q ss_pred EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCc
Q 044724 382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN 461 (782)
Q Consensus 382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 461 (782)
..+-.+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444455554 3454443 467777777777776666677777777777777777776666677777777777777777
Q ss_pred ceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc-CCcccccccccccccCCCC
Q 044724 462 ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL-IPPFFYNTALHESYNNNSS 540 (782)
Q Consensus 462 l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~ 540 (782)
+++..+ ..+.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..
T Consensus 88 l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~------------ 147 (276)
T 2z62_A 88 IQSLAL--------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------------ 147 (276)
T ss_dssp CCEECT--------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG------------
T ss_pred cCccCh--------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc------------
Confidence 776655 3456667777777777777665555666777777777777776653 3444432
Q ss_pred CCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccc----eeeccc
Q 044724 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQ----ILNLSH 616 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~ 616 (782)
+++|+.|++++|++++..+..+..+++|+ .|++++
T Consensus 148 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 148 -----------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred -----------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 34566666666666666556666665555 566666
Q ss_pred ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724 617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673 (782)
Q Consensus 617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~ 673 (782)
|.+++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 6666544444433 3566666666666655555556666666666666666655543
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.5e-29 Score=290.40 Aligned_cols=473 Identities=13% Similarity=0.129 Sum_probs=256.6
Q ss_pred CCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCcc---CCC--Cc----cccccc
Q 044724 53 DCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCV---ENE--GA----SSREVT 123 (782)
Q Consensus 53 ~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~--~~----~~~~l~ 123 (782)
-|++|.++... ....+++...... .+...+.++++|++|+++++...... |.. .. ......
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~ 102 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV------SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS------CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred HHHHHHHhhhh----hceEEeecccccc------CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH
Confidence 46689988322 2345566543221 11235678899999999998632211 110 00 001134
Q ss_pred CCCCCcEEeCCCCCCCCcchhhcC-CCCCCCEEEccCC-cCcCc-CChhhhcCCCCCCEEEcccCCCCCcc---CCCCCC
Q 044724 124 RLNNLKMFDLSGNSFNNSILSSLT-RLSSVRSLKLSYN-RLEGS-IDVKEFDSFNNLEVLDMKRNEIDNLV---VPQGFP 197 (782)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~ 197 (782)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .+... ++. .+.++++|++|++++|.+++.. ++....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 688999999999999987777776 6999999999999 45422 332 4568999999999999977643 123345
Q ss_pred CCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEc
Q 044724 198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA 277 (782)
Q Consensus 198 ~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l 277 (782)
.+++|++|++++|...+.......+...+++|++|++++.. .+.+ ++ ..+..+++|+.|++
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-----------------~~~~-l~-~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-----------------PLEK-LA-TLLQRAPQLEELGT 242 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS-----------------CHHH-HH-HHHHHCTTCSEEEC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC-----------------cHHH-HH-HHHhcCCcceEccc
Confidence 78899999999854223333333333336777777766521 1111 11 12334445555554
Q ss_pred cCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEE-EccCCcCCccCChhhhhcCCCCcEEEcccC
Q 044724 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLL-DVSNNNFQGCIPVEIGDILPSLSCFNISMN 356 (782)
Q Consensus 278 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 356 (782)
..+...-.. +.+.+ .+..+.++++|+.| .+.+... +.++..+.. +++|++|++++|
T Consensus 243 ~~~~~~~~~--------------------~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~-~~~L~~L~L~~~ 299 (594)
T 2p1m_B 243 GGYTAEVRP--------------------DVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSV-CSRLTTLNLSYA 299 (594)
T ss_dssp SBCCCCCCH--------------------HHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHH-HTTCCEEECTTC
T ss_pred ccccCccch--------------------hhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHh-hCCCCEEEccCC
Confidence 332110000 00000 01112234444444 2222211 123332222 455666666555
Q ss_pred cCcccCCCcccccccccCCCCCCCCEEEccCcccccc-CCccccCCCCCcEEECc---------CCcccccCCcccc-Cc
Q 044724 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE-IPQSLSKCFLLKGLYLN---------NNNLSGKIPQWLG-NL 425 (782)
Q Consensus 357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l 425 (782)
.+++.....+ +..+++|++|++++| ++.. ++.....+++|++|++. .+.+++.....+. ++
T Consensus 300 ~l~~~~l~~~-------~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 300 TVQSYDLVKL-------LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp CCCHHHHHHH-------HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHH-------HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 5443221111 114556666666655 3221 11112235566666662 2344332222222 36
Q ss_pred CCCCEEeCCCCccccCCChhcc-CCCCCceEecc--C----CcceeeCCC-CccccchhhhcCCCCCCEEEcCCCcceee
Q 044724 426 TGLQHIIMPKNHLEGPIPVEFC-QLDWLQILDIS--D----NNISGSLPS-CFHLLSIEQINGLSGLSHLILAHNNLEGE 497 (782)
Q Consensus 426 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 497 (782)
++|++|.+..|.+++..+..+. .+++|+.|+++ + |.+++...+ .+. ..+..+++|++|++++ .+++.
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~----~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG----AIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH----HHHHHCTTCCEEECCS-SCCHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH----HHHhhCCCccEEeecC-cccHH
Confidence 6777777766766655444444 46777777777 3 344421100 000 2245677788888866 55554
Q ss_pred cCccccC-CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeee
Q 044724 498 VPVQLCG-LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYT 576 (782)
Q Consensus 498 ~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (782)
.+..+.. +++|+.|+|++|.+++..+..+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~------------------------------------------------- 477 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL------------------------------------------------- 477 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHH-------------------------------------------------
Confidence 4444444 77788888888877543222210
Q ss_pred ecchhhcccceeeccCCccCccCCc-ccccccccceeecccccccccCCccc-cCCCCCCEEecCCCcc
Q 044724 577 YQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTF-SKLEAYRNLDLSYNKL 643 (782)
Q Consensus 577 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~LdLs~N~l 643 (782)
..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++......+ ..++.|+...+..+.-
T Consensus 478 ---~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 478 ---SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp ---HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred ---hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 0145688888888887644333 34557888888888888764433334 4567777666665543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.9e-25 Score=228.02 Aligned_cols=208 Identities=24% Similarity=0.282 Sum_probs=114.2
Q ss_pred CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN 506 (782)
Q Consensus 427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 506 (782)
+|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++|++++..+..|.+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH--------HHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 45566666666655555555556666666666665554444 3345555666666666666555555555566
Q ss_pred CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724 507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS 586 (782)
Q Consensus 507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 586 (782)
+|++|++++|++++..+..+.. +++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~ 127 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGH-----------------------------------------------------LKTLK 127 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTT-----------------------------------------------------CTTCC
T ss_pred cccEEECCCCCccccCchhccc-----------------------------------------------------CCCCC
Confidence 6666666666555433322221 33555
Q ss_pred eeeccCCccCcc-CCcccccccccceeecccccccccCCccccCCCCCC----EEecCCCccccCCchhhhcCCCCcEEE
Q 044724 587 GIDLSCNKLIGH-IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYR----NLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 587 ~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
.|++++|.+++. +|..++.+++|++|+|++|++++..+..|..+++|+ +|++++|++++..+..+. ..+|++|+
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~ 206 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELA 206 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEE
Confidence 566666665542 455566666666666666666555555555554444 556666666544333332 23556666
Q ss_pred cccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
+++|++++..+..+..+.+++.+++.+||+.|+|+
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666655555444555555556666666666554
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.4e-24 Score=245.53 Aligned_cols=259 Identities=26% Similarity=0.343 Sum_probs=215.9
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
.+++.|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|++++ +|. .
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~-----------~l~~L~~L~Ls~N~l~~-lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA-----------LPPELRTLEVSGNQLTS-LPV---L 99 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC-----------CCTTCCEEEECSCCCSC-CCC---C
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC-----------cCCCCCEEEcCCCcCCc-CCC---C
Confidence 35899999999999 8898764 799999999999984 443 36899999999999984 554 6
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|. .
T Consensus 100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~-----------~ 159 (622)
T 3g06_A 100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA-----------L 159 (622)
T ss_dssp CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-----------C
T ss_pred CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC-----------c
Confidence 7899999999999985 444 57899999999999996 4543 4899999999999985 452 3
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
+++|+.|++++|++++ +| ..+++|+.|++++|++++ +|..
T Consensus 160 ~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~----------------------------------- 199 (622)
T 3g06_A 160 PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL----------------------------------- 199 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC-----------------------------------
T ss_pred cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc-----------------------------------
Confidence 5789999999999985 55 457899999999999985 3321
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
+++|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..+++|+.|+|++
T Consensus 200 ---------------------~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 200 ---------------------PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp ---------------------CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred ---------------------cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 346889999999999 45643 4789999999999996 66 4668999999999
Q ss_pred CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693 (782)
Q Consensus 641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC 693 (782)
|+|+ .+|. .+++|++|++++|+|+ .+|..+..+++++.+++.+|++..
T Consensus 251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 9999 5665 6789999999999999 667768889999999999999764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.3e-24 Score=223.77 Aligned_cols=204 Identities=22% Similarity=0.260 Sum_probs=122.3
Q ss_pred CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482 (782)
Q Consensus 403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~ 482 (782)
..+.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|+++...+ ..|..++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------GIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT--------TTTSSCT
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh--------hhhcCCC
Confidence 4667777777776 3554443 467777777777776666667777777777777777663333 3345666
Q ss_pred CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724 483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562 (782)
Q Consensus 483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (782)
+|++|++++|++++..+..|..+++|++|++++|++++..|..+..
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 131 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---------------------------------- 131 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----------------------------------
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----------------------------------
Confidence 6666666666666555555666666666666666666544433322
Q ss_pred ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642 (782)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 642 (782)
+++|+.|+|++|.+++..+..|+.+++|+.|+|++|++++..+..|.++++|+.|++++|+
T Consensus 132 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 132 -------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 3355666666666665444455566666666666666665555555556666666666666
Q ss_pred cccCCchhhhcCCCCcEEEcccCcCccc
Q 044724 643 LNGKIPRQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
+++..+..|..+++|+.|++++|++.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6554444455555555555555555443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.2e-24 Score=224.07 Aligned_cols=113 Identities=24% Similarity=0.263 Sum_probs=65.1
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 34555555555555555555666666666666666666555555566666666666666666444444555666666666
Q ss_pred ccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
++|+++. +|.......+++.+.+.+|||.|+|.
T Consensus 180 ~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 180 QENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCCcCCc-cChhhcccccCCeEEeCCCCccCcCc
Confidence 6666653 33324444555666666666666653
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.5e-23 Score=215.99 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=55.4
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
+|+.|++++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 44555555555554444444555555555555555554444444555555555555555554444444455555555555
Q ss_pred cCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGL 695 (782)
Q Consensus 664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~ 695 (782)
+|++++..+..+..+++++.+++.+||+.|+|
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 55555444433444444555555555555544
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.2e-27 Score=274.13 Aligned_cols=285 Identities=14% Similarity=0.122 Sum_probs=156.6
Q ss_pred CCCCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEE-EccCccccccCCcc
Q 044724 320 HKSLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL-LLEENHFVGEIPQS 397 (782)
Q Consensus 320 ~~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~ 397 (782)
+++|++|++++| .+. .+|..+.. +++|+.|+++.+... ..+..+.+ ++..+.++++|+.| .+.+... +.++..
T Consensus 210 ~~~L~~L~L~~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~-~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~ 284 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLE-KLATLLQR-APQLEELGTGGYTAE-VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAV 284 (594)
T ss_dssp CTTCCEEECCTTSCHH-HHHHHHHH-CTTCSEEECSBCCCC-CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGG
T ss_pred CCCCcEEecCCCCcHH-HHHHHHhc-CCcceEcccccccCc-cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHH
Confidence 466777777776 333 35555544 677777775544310 00000000 11112256777777 3333222 233444
Q ss_pred ccCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccC-CChhccCCCCCceEeccC---------CcceeeC
Q 044724 398 LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGP-IPVEFCQLDWLQILDISD---------NNISGSL 466 (782)
Q Consensus 398 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~ 466 (782)
+..+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++++ +.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 4456777777777777654322 22456777777777776 3322 222233467777777733 3333221
Q ss_pred CCCccccchhhh-cCCCCCCEEEcCCCcceeecCcccc-CCCCCCEEEcc--C----CcCCCcCCc-ccccccccccccC
Q 044724 467 PSCFHLLSIEQI-NGLSGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLS--D----NNLHGLIPP-FFYNTALHESYNN 537 (782)
Q Consensus 467 p~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~~~~~~~~~~ 537 (782)
. ..+ .++++|++|.++.|.+++.....+. .+++|+.|+++ + |.+++.... .+...
T Consensus 364 l--------~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l-------- 427 (594)
T 2p1m_B 364 L--------VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-------- 427 (594)
T ss_dssp H--------HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH--------
T ss_pred H--------HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH--------
Confidence 1 122 2467788887777777655544444 47778888887 3 344321110 00000
Q ss_pred CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc-ccccceeeccc
Q 044724 538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN-LTRIQILNLSH 616 (782)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~ 616 (782)
...+++|+.|++++ .+++..+..++. +++|+.|+|++
T Consensus 428 -----------------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 428 -----------------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp -----------------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred -----------------------------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 01145677777766 555544445554 67777777777
Q ss_pred ccccccCCccc-cCCCCCCEEecCCCccccCCch-hhhcCCCCcEEEcccCcCc
Q 044724 617 NNLTGTIPSTF-SKLEAYRNLDLSYNKLNGKIPR-QLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 617 N~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~ 668 (782)
|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 77765554444 5577777778777777544443 2344677777777777764
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.5e-24 Score=222.01 Aligned_cols=222 Identities=21% Similarity=0.254 Sum_probs=163.4
Q ss_pred CEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN 460 (782)
Q Consensus 381 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 460 (782)
..+++..+.+.... ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 33444444443322 23455666666666666652 2 2366667777777777776652 35677777777777777
Q ss_pred cceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCC
Q 044724 461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSS 540 (782)
Q Consensus 461 ~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 540 (782)
.+++..+ ..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 96 ~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------ 155 (272)
T 3rfs_A 96 QLQSLPN--------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------ 155 (272)
T ss_dssp CCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred ccCccCh--------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------------
Confidence 7775555 34567778888888888887666667788888888888888887665554433
Q ss_pred CCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccc
Q 044724 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT 620 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 620 (782)
+++|+.|++++|++++..|..++.+++|+.|+|++|+++
T Consensus 156 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 156 -----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 457888888888888877777889999999999999999
Q ss_pred ccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcc
Q 044724 621 GTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA 676 (782)
Q Consensus 621 ~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 676 (782)
+..|..|+.+++|+.|++++|.+.+..| .|+.++++.|+++|.+|...+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccc
Confidence 8888889999999999999999886544 688889999999999998543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.1e-23 Score=215.46 Aligned_cols=178 Identities=23% Similarity=0.206 Sum_probs=96.3
Q ss_pred CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN 506 (782)
Q Consensus 427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 506 (782)
++++|++++|.+++..+..|..+++|++|++++|.+++..+ .+.+++|++|++++|+++ .+|..+..++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 100 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP 100 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------CSCCTTCCEEECCSSCCS-SCCCCTTTCT
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----------CCCCCcCCEEECCCCcCC-cCchhhccCC
Confidence 44444444444444444444444445555555554443222 134455555555555554 4444555555
Q ss_pred CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724 507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS 586 (782)
Q Consensus 507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 586 (782)
+|++|++++|++++..|..+.. +++|+
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~-----------------------------------------------------l~~L~ 127 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRG-----------------------------------------------------LGELQ 127 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTT-----------------------------------------------------CTTCC
T ss_pred CCCEEECCCCcCcccCHHHHcC-----------------------------------------------------CCCCC
Confidence 5555555555555444433322 33455
Q ss_pred eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724 587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN 666 (782)
Q Consensus 587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 666 (782)
.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 5666666665555555566666666666666666555555566666666666666666 455555566666666666666
Q ss_pred Ccc
Q 044724 667 LSG 669 (782)
Q Consensus 667 l~~ 669 (782)
+..
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.7e-24 Score=219.93 Aligned_cols=207 Identities=25% Similarity=0.245 Sum_probs=118.3
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 456 (782)
+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4444444554444432 1 1344455555555555555432 2455555555555555555555555555566666666
Q ss_pred ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724 457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN 536 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 536 (782)
+++|++++..+ ..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 116 L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------- 179 (272)
T 3rfs_A 116 LVENQLQSLPD--------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------- 179 (272)
T ss_dssp CTTSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCCcCCccCH--------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------
Confidence 66666654443 33455566666666666666555555566666666666666666544433322
Q ss_pred CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724 537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH 616 (782)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 616 (782)
+++|+.|++++|++++..|..++.+++|+.|+|++
T Consensus 180 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 180 ---------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 34566666666666666666666677777777777
Q ss_pred ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724 617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN 655 (782)
Q Consensus 617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 655 (782)
|.+.+. +++|+.|+++.|+++|.+|..++.+.
T Consensus 215 N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 215 NPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 766643 33566677777777777776655543
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.5e-25 Score=235.90 Aligned_cols=266 Identities=17% Similarity=0.120 Sum_probs=162.7
Q ss_pred EEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCC----CcccccccccCCCCC-CCCEEEccCccccccCCcccc
Q 044724 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP----SSFEGHMFSKNFNLT-NVRWLLLEENHFVGEIPQSLS 399 (782)
Q Consensus 325 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~g~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~ 399 (782)
.++++.|.++|.+|..+.. .++|++|++++|.+++..+ ..+. .++ +|++|++++|.+++..+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFA--------NTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHH--------TCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHH--------hCCCceeEEECcCCCCCHHHHHHHH
Confidence 4577888888777765543 4558888888888876555 3333 566 788888888888776665555
Q ss_pred CC-----CCCcEEECcCCcccccCCccccC----c-CCCCEEeCCCCccccCCChhccC-----CCCCceEeccCCccee
Q 044724 400 KC-----FLLKGLYLNNNNLSGKIPQWLGN----L-TGLQHIIMPKNHLEGPIPVEFCQ-----LDWLQILDISDNNISG 464 (782)
Q Consensus 400 ~l-----~~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~ 464 (782)
.+ ++|++|++++|.+++..+..+.. + ++|++|++++|.+++..+..+.. .++|++|++++|++++
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 53 77888888888877666554433 3 67788888888777666554432 2577777777777764
Q ss_pred eCCCCccccchhhhcCCC-CCCEEEcCCCcceeecCccc----cCC-CCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724 465 SLPSCFHLLSIEQINGLS-GLSHLILAHNNLEGEVPVQL----CGL-NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538 (782)
Q Consensus 465 ~~p~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 538 (782)
..+..+. ..+..++ +|++|+|++|++++..+..+ ..+ ++|++|||++|++++.....+...-
T Consensus 153 ~~~~~l~----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l-------- 220 (362)
T 3goz_A 153 KSSDELI----QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF-------- 220 (362)
T ss_dssp SCHHHHH----HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------
T ss_pred HHHHHHH----HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH--------
Confidence 3332111 2334444 77777777777765554333 334 4777777777777643222111100
Q ss_pred CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC----cccccccccceeec
Q 044724 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP----PPIGNLTRIQILNL 614 (782)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L 614 (782)
....++|+.|||++|.+++..+ ..+..+++|++|+|
T Consensus 221 ----------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 221 ----------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp ----------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred ----------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 0002357777777777765433 23455666777777
Q ss_pred ccccccccC-------CccccCCCCCCEEecCCCccccCCchhh
Q 044724 615 SHNNLTGTI-------PSTFSKLEAYRNLDLSYNKLNGKIPRQL 651 (782)
Q Consensus 615 s~N~l~~~~-------p~~~~~l~~L~~LdLs~N~l~~~ip~~l 651 (782)
++|.+.+.. +..+..+++|+.||+++|++.+..|..+
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 777644332 2345566666777777777665544444
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.1e-24 Score=234.51 Aligned_cols=260 Identities=17% Similarity=0.169 Sum_probs=155.1
Q ss_pred EEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC----ccccCCC-CCcEEECcCCcccccCCccccC
Q 044724 350 CFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP----QSLSKCF-LLKGLYLNNNNLSGKIPQWLGN 424 (782)
Q Consensus 350 ~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~ 424 (782)
.++++.|.+++.+|..+. ..++|++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~--------~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS--------IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp EEECCCCTTCCHHHHHHT--------SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ccccccccchHHHHHHHh--------CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 345666766666555443 34457777777777765554 5566666 6777777777777666655555
Q ss_pred c-----CCCCEEeCCCCccccCCChhccC----C-CCCceEeccCCcceeeCCCCccccchhhhcC-CCCCCEEEcCCCc
Q 044724 425 L-----TGLQHIIMPKNHLEGPIPVEFCQ----L-DWLQILDISDNNISGSLPSCFHLLSIEQING-LSGLSHLILAHNN 493 (782)
Q Consensus 425 l-----~~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~-l~~L~~L~L~~N~ 493 (782)
+ ++|++|++++|.+++..+..+.. + ++|++|++++|++++..+..+. ..+.. .++|++|+|++|+
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----QAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHTTSCTTCCEEECTTSC
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH----HHHHhCCCceeEEEccCCc
Confidence 4 67777777777777665554333 3 6777777777777654442221 22333 3577777777777
Q ss_pred ceeec----CccccCCC-CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724 494 LEGEV----PVQLCGLN-QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568 (782)
Q Consensus 494 l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (782)
+++.. +..+..++ +|++|+|++|++++..+..+...-
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------------- 191 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------------- 191 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------
Confidence 76432 23334444 677777777777665554443210
Q ss_pred EecCCeeeecchhh-cccceeeccCCccCcc----CCccccc-ccccceeecccccccccCC----ccccCCCCCCEEec
Q 044724 569 TTKSNAYTYQGRVL-SLLSGIDLSCNKLIGH----IPPPIGN-LTRIQILNLSHNNLTGTIP----STFSKLEAYRNLDL 638 (782)
Q Consensus 569 ~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~LdL 638 (782)
... ++|+.|||++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|
T Consensus 192 -----------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 192 -----------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp -----------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred -----------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 001 3567777777777652 3344444 3467777777777765443 33456677777777
Q ss_pred CCCccccCCc-------hhhhcCCCCcEEEcccCcCccc
Q 044724 639 SYNKLNGKIP-------RQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 639 s~N~l~~~ip-------~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
++|.+.+..+ ..+..++.|+.||+++|++...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7777543332 2455666677777777776655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=221.39 Aligned_cols=81 Identities=30% Similarity=0.381 Sum_probs=42.9
Q ss_pred cccceeeccCCccCccCCcccccc---cccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcE
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNL---TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVV 659 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 659 (782)
++|++|||++|++++.+|..+..+ ++|++|+|++|+++ .+|..+. ++|++|||++|+|++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 345555555555555445444444 35555555555555 4444443 4566666666666542 22 445555666
Q ss_pred EEcccCcCc
Q 044724 660 FSFACNNLS 668 (782)
Q Consensus 660 L~ls~N~l~ 668 (782)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 666666554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=219.54 Aligned_cols=142 Identities=22% Similarity=0.192 Sum_probs=72.6
Q ss_pred CCCCEEEccCccccccCCccc--cCCCCCcEEECcCCcccccCC----ccccCcCCCCEEeCCCCccccCCChhccCCCC
Q 044724 378 TNVRWLLLEENHFVGEIPQSL--SKCFLLKGLYLNNNNLSGKIP----QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDW 451 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 451 (782)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445566666665555555555 555556666666665554333 22334555555555555555555555555555
Q ss_pred CceEeccCCcceee--CCCCccccchhhhcCCCCCCEEEcCCCcceeecCc----cccCCCCCCEEEccCCcCCCcCCcc
Q 044724 452 LQILDISDNNISGS--LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV----QLCGLNQLQLLDLSDNNLHGLIPPF 525 (782)
Q Consensus 452 L~~L~Ls~N~l~~~--~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 525 (782)
|++|++++|++.+. ++.. ..++.+++|++|+|++|+++. ++. .+..+++|++|||++|++++..|..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAA------LCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTT------SCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCEEECCCCCCccchhhhHH------HhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 55555555554431 1100 112345555555555555541 111 1344555555555555555554443
Q ss_pred c
Q 044724 526 F 526 (782)
Q Consensus 526 ~ 526 (782)
+
T Consensus 244 ~ 244 (310)
T 4glp_A 244 A 244 (310)
T ss_dssp C
T ss_pred H
Confidence 3
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.6e-22 Score=205.75 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=118.5
Q ss_pred CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC
Q 044724 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ 507 (782)
Q Consensus 428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 507 (782)
.++++++++.++ .+|..+. ++++.|++++|++++..+ ..+.++++|++|+|++|++++..+..|..+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 444555555554 2333322 355566666666655444 33455666666666666666555555666666
Q ss_pred CCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccce
Q 044724 508 LQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG 587 (782)
Q Consensus 508 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 587 (782)
|++|++++|++++..+..+.. +++|+.
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~ 111 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDH-----------------------------------------------------LTQLDK 111 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTT-----------------------------------------------------CTTCCE
T ss_pred CCEEECCCCcccccChhHhcc-----------------------------------------------------cCCCCE
Confidence 666666666666544443322 345667
Q ss_pred eeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724 588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667 (782)
Q Consensus 588 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 667 (782)
|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 77777777766666677777888888888888876666777888888888888888877777777888888888888888
Q ss_pred cccCCC
Q 044724 668 SGKIPE 673 (782)
Q Consensus 668 ~~~~p~ 673 (782)
++..+.
T Consensus 192 ~c~~~~ 197 (251)
T 3m19_A 192 DCSRCE 197 (251)
T ss_dssp CTTSTT
T ss_pred eCCccc
Confidence 776444
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.6e-24 Score=235.64 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=68.9
Q ss_pred hcccceeeccCCccC----ccCCcccccccccceeeccccccccc----CCccc--cCCCCCCEEecCCCcccc----CC
Q 044724 582 LSLLSGIDLSCNKLI----GHIPPPIGNLTRIQILNLSHNNLTGT----IPSTF--SKLEAYRNLDLSYNKLNG----KI 647 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~LdLs~N~l~~----~i 647 (782)
+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 446677777777775 45677777888888888888888765 56666 348888888888888887 47
Q ss_pred chhh-hcCCCCcEEEcccCcCcccCC
Q 044724 648 PRQL-VELNAFVVFSFACNNLSGKIP 672 (782)
Q Consensus 648 p~~l-~~l~~L~~L~ls~N~l~~~~p 672 (782)
|..+ .++++|++|++++|++++..|
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777 567888888888888887664
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.3e-22 Score=201.90 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=26.2
Q ss_pred cccceeeccccc-ccccCCccccCC-CCCCEEecCCCccccCCchhhhcCCCCcEEEcccC
Q 044724 607 TRIQILNLSHNN-LTGTIPSTFSKL-EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN 665 (782)
Q Consensus 607 ~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 665 (782)
++|+.|+|++|+ +++..+..|.++ ++|+.||+++|++++ +|.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 445555555552 544444445555 555555555555542 2222 3444455554443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.2e-24 Score=234.68 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=183.9
Q ss_pred cCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCc---cccccCCccc-------cCCCCCc
Q 044724 336 CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEEN---HFVGEIPQSL-------SKCFLLK 405 (782)
Q Consensus 336 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~ 405 (782)
.++..+.. +++|+.|++++|.+++..+..+. ..+..+++|++|++++| ++++.+|..+ ..+++|+
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~----~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLS----ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHH----HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHH----HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 45666655 67888888888877765433321 11226788888888885 4445555444 6788899
Q ss_pred EEECcCCcccc----cCCccccCcCCCCEEeCCCCccccCCChhcc----CC---------CCCceEeccCCccee-eCC
Q 044724 406 GLYLNNNNLSG----KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC----QL---------DWLQILDISDNNISG-SLP 467 (782)
Q Consensus 406 ~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~Ls~N~l~~-~~p 467 (782)
+|+|++|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+++. .+|
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999998886 4677788888999999999988755444433 33 889999999998872 223
Q ss_pred CCccccchhhhcCCCCCCEEEcCCCccee-----ecCccccCCCCCCEEEccCCcCC----CcCCcccccccccccccCC
Q 044724 468 SCFHLLSIEQINGLSGLSHLILAHNNLEG-----EVPVQLCGLNQLQLLDLSDNNLH----GLIPPFFYNTALHESYNNN 538 (782)
Q Consensus 468 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~~~~~~~ 538 (782)
. +. ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..
T Consensus 178 ~-l~----~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~---------- 242 (386)
T 2ca6_A 178 E-WA----KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS---------- 242 (386)
T ss_dssp H-HH----HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----------
T ss_pred H-HH----HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc----------
Confidence 1 10 246678899999999998872 34447888999999999999886 334443322
Q ss_pred CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCcc----CCcccc--ccccccee
Q 044724 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIG--NLTRIQIL 612 (782)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L 612 (782)
+++|+.|+|++|.+++. +|..+. .+++|+.|
T Consensus 243 -------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 243 -------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp -------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred -------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 45789999999999865 566663 48999999
Q ss_pred ecccccccc----cCCccc-cCCCCCCEEecCCCccccCCc
Q 044724 613 NLSHNNLTG----TIPSTF-SKLEAYRNLDLSYNKLNGKIP 648 (782)
Q Consensus 613 ~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~ip 648 (782)
+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 280 ~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999997 488877 678999999999999998775
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.8e-24 Score=225.02 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=139.7
Q ss_pred CcEEEccCCcCCccCChhhhhcC--CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 323 LRLLDVSNNNFQGCIPVEIGDIL--PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 323 L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
++.++++++.+. |..+.. + ++++.|++++|.+.+..+..+ .+++|++|++++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~~~---------~~~~L~~L~L~~~~l~~~------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAEHF---------SPFRVQHMDLSNSVIEVS------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCSCC---------CCBCCCEEECTTCEECHH-------
T ss_pred heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchhhc---------cCCCCCEEEccCCCcCHH-------
Confidence 566666666554 222322 3 556666666655554433311 344555555555544433
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC-cceee-CCCCccccchhhh
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN-NISGS-LPSCFHLLSIEQI 478 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~~~ 478 (782)
.++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++ ..+
T Consensus 109 ----------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~--------~~~ 164 (336)
T 2ast_B 109 ----------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ--------TLL 164 (336)
T ss_dssp ----------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH--------HHH
T ss_pred ----------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH--------HHH
Confidence 03344444445555555555444444444555555555555555 34431 22 234
Q ss_pred cCCCCCCEEEcCCC-cceee-cCccccCCC-CCCEEEccCC--cCC-CcCCcccccccccccccCCCCCCCCcccccccc
Q 044724 479 NGLSGLSHLILAHN-NLEGE-VPVQLCGLN-QLQLLDLSDN--NLH-GLIPPFFYNTALHESYNNNSSLDKPFEISFDFR 552 (782)
Q Consensus 479 ~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (782)
..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~------------------------ 220 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR------------------------ 220 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH------------------------
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh------------------------
Confidence 45566666666666 55543 344555666 6666666666 333 122221111
Q ss_pred ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc-cCccCCcccccccccceeeccccc-ccccCCccccCC
Q 044724 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK-LIGHIPPPIGNLTRIQILNLSHNN-LTGTIPSTFSKL 630 (782)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l 630 (782)
+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++
T Consensus 221 -----------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 221 -----------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp -----------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred -----------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 4467777777777 666666777788888888888885 322222357788
Q ss_pred CCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCc
Q 044724 631 EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675 (782)
Q Consensus 631 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~ 675 (782)
++|+.|++++| ++...-..+. ..+..|++++|++++..|...
T Consensus 272 ~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 272 PTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 88999999888 4432222232 225555688999998888743
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=6.9e-22 Score=201.11 Aligned_cols=181 Identities=23% Similarity=0.306 Sum_probs=163.8
Q ss_pred CCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccc
Q 044724 450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNT 529 (782)
Q Consensus 450 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 529 (782)
...++++++++.++ .+|.. + .++++.|+|++|++++..+..|.++++|++|+|++|++++..|..+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~--------~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSG--------I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD- 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSC--------C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-
T ss_pred CCCeEEecCCCCcc-ccCCC--------C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-
Confidence 45789999999998 56632 2 268999999999999888889999999999999999999877766543
Q ss_pred cccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccc
Q 044724 530 ALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI 609 (782)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 609 (782)
+++|+.|+|++|++++..+..|+.+++|
T Consensus 82 ----------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 82 ----------------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ----------------------------------------------------CCcCCEEECCCCcccccChhHhcccCCC
Confidence 5589999999999998888899999999
Q ss_pred ceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCC
Q 044724 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGN 689 (782)
Q Consensus 610 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gN 689 (782)
++|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++++..|..+..+.+++.+++.+|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999999999888888999999999999999999887778999999999999999999988877888999999999999
Q ss_pred CCCCC
Q 044724 690 PFLCG 694 (782)
Q Consensus 690 p~lC~ 694 (782)
|+.|.
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 99998
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.6e-23 Score=223.36 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=192.7
Q ss_pred CccEEEccCCCCCCCCccCCCCC--CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCccc-CCCcccccccccC
Q 044724 298 QLKSLSLSSGYGDGPFRLPIHSH--KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS-IPSSFEGHMFSKN 374 (782)
Q Consensus 298 ~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~g~~~~~~ 374 (782)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. ++. +++|++|++++|.+++. ++..+.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~------- 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILS------- 115 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHT-------
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHh-------
Confidence 4789999987665 2334444 7899999999999976655 555 89999999999998765 555554
Q ss_pred CCCCCCCEEEccCccccccCCccccCCCCCcEEECcCC-ccccc-CCccccCcCCCCEEeCCCC-ccccC-CChhccCCC
Q 044724 375 FNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN-NLSGK-IPQWLGNLTGLQHIIMPKN-HLEGP-IPVEFCQLD 450 (782)
Q Consensus 375 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~ 450 (782)
.+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++
T Consensus 116 -~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 -QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp -TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred -hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 7899999999999999888888999999999999999 67753 6667888999999999999 88864 577788888
Q ss_pred -CCceEeccCC--cce-eeCCCCccccchhhhcCCCCCCEEEcCCCc-ceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724 451 -WLQILDISDN--NIS-GSLPSCFHLLSIEQINGLSGLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF 525 (782)
Q Consensus 451 -~L~~L~Ls~N--~l~-~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 525 (782)
+|++|++++| .++ +.+| ..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..+..
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~--------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 264 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLS--------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPET 264 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHH--------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGG
T ss_pred cCCCEEEeCCCcccCCHHHHH--------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHH
Confidence 9999999999 454 3344 456778899999999998 776777788888999999999886 222222
Q ss_pred cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724 526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN 605 (782)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (782)
+... ..+++|+.|++++| ++ ...+..
T Consensus 265 ~~~l--------------------------------------------------~~~~~L~~L~l~~~-i~---~~~~~~ 290 (336)
T 2ast_B 265 LLEL--------------------------------------------------GEIPTLKTLQVFGI-VP---DGTLQL 290 (336)
T ss_dssp GGGG--------------------------------------------------GGCTTCCEEECTTS-SC---TTCHHH
T ss_pred HHHH--------------------------------------------------hcCCCCCEEeccCc-cC---HHHHHH
Confidence 2110 01457788888877 32 224444
Q ss_pred c-cccceeecccccccccCCccccC
Q 044724 606 L-TRIQILNLSHNNLTGTIPSTFSK 629 (782)
Q Consensus 606 l-~~L~~L~Ls~N~l~~~~p~~~~~ 629 (782)
+ ..++.|++++|++++..|..+++
T Consensus 291 l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 291 LKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHhhCcceEEecccCccccCCcccc
Confidence 4 34777777777777777776654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.5e-22 Score=199.76 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=128.7
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCc-ccccCCccccCcCCCCEEeCCC-CccccCCChhccCCCCCceEe
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN-LSGKIPQWLGNLTGLQHIIMPK-NHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 456 (782)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555556666666664 5544444566666666666665 666655556666666666666
Q ss_pred ccCCcceeeCCCCccccchhhhcCCCCCC---EEEcCCC-cceeecCccccCCCCCC-EEEccCCcCCCcCCcccccccc
Q 044724 457 ISDNNISGSLPSCFHLLSIEQINGLSGLS---HLILAHN-NLEGEVPVQLCGLNQLQ-LLDLSDNNLHGLIPPFFYNTAL 531 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~~~ 531 (782)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++ .+|.....
T Consensus 112 l~~n~l~~-lp~---------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~--- 177 (239)
T 2xwt_C 112 IFNTGLKM-FPD---------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN--- 177 (239)
T ss_dssp EEEECCCS-CCC---------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT---
T ss_pred CCCCCCcc-ccc---------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC---
Confidence 66666664 442 34455555 7777777 77766666677788888 8888888777 33332111
Q ss_pred cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc-cCccCCcccccc-ccc
Q 044724 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK-LIGHIPPPIGNL-TRI 609 (782)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L 609 (782)
.++|+.|++++|+ +++..+..|.++ ++|
T Consensus 178 --------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 178 --------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp --------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred --------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 1357888888884 887777788888 899
Q ss_pred ceeecccccccccCCccccCCCCCCEEecCCC
Q 044724 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641 (782)
Q Consensus 610 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 641 (782)
+.|++++|++++. |.. .+++|+.|+++++
T Consensus 208 ~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 208 SLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp SEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred cEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 9999999999854 443 6778889998876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=7e-22 Score=207.33 Aligned_cols=192 Identities=19% Similarity=0.329 Sum_probs=105.7
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. + .+..
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~---------~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S---------AIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G---------GGTT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h---------hhcC
Confidence 4445555555554442 22 34445555555555555543322 55555555555555555431 1 2445
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK 560 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (782)
+++|++|++++|++++. + .+..+++|++|++++|++++..+ +..
T Consensus 106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------------------------- 149 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------------------------- 149 (308)
T ss_dssp CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------------
T ss_pred CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------------
Confidence 55566666666655532 2 25556666666666666554322 111
Q ss_pred ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 640 (782)
+++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 150 ---------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 150 ---------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp ---------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred ---------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 34566666666666643 22 6666667777777776664433 66666777777777
Q ss_pred CccccCCchhhhcCCCCcEEEcccCcCcc
Q 044724 641 NKLNGKIPRQLVELNAFVVFSFACNNLSG 669 (782)
Q Consensus 641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~ 669 (782)
|++++..| +..+++|++|++++|++++
T Consensus 205 N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 205 NQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CccCcccc--ccCCCCCCEEEccCCeeec
Confidence 77765432 6666777777777777665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.5e-21 Score=203.07 Aligned_cols=192 Identities=24% Similarity=0.371 Sum_probs=124.6
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 456 (782)
+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4555555555555553 22 35556666666666666654333 66666666666666666642 2466667777777
Q ss_pred ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724 457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN 536 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 536 (782)
+++|++++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..
T Consensus 114 l~~n~l~~~-~---------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~-------- 171 (308)
T 1h6u_A 114 LTSTQITDV-T---------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN-------- 171 (308)
T ss_dssp CTTSCCCCC-G---------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------
T ss_pred CCCCCCCCc-h---------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC--------
Confidence 777776642 2 25666777777777777764433 6677777777777777764322 211
Q ss_pred CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724 537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH 616 (782)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 616 (782)
+++|+.|++++|++++..+ +..+++|+.|+|++
T Consensus 172 ---------------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 172 ---------------------------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred ---------------------------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 4567777777777775433 77788888888888
Q ss_pred ccccccCCccccCCCCCCEEecCCCcccc
Q 044724 617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNG 645 (782)
Q Consensus 617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 645 (782)
|++++..| +..+++|+.|++++|++++
T Consensus 205 N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 205 NQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CccCcccc--ccCCCCCCEEEccCCeeec
Confidence 88886553 7788888888888888874
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=6e-21 Score=214.73 Aligned_cols=188 Identities=24% Similarity=0.315 Sum_probs=125.4
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724 379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458 (782)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 458 (782)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 555442 67888888888887 455 346777778888777776 555 544 77777777
Q ss_pred CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538 (782)
Q Consensus 459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 538 (782)
+|++++ +| . .+++|++|++++|++++ +|. .+++|++|+|++|++++ +|. +.
T Consensus 129 ~N~l~~-lp--------~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~----------- 179 (571)
T 3cvr_A 129 NNQLTM-LP--------E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP----------- 179 (571)
T ss_dssp SSCCSC-CC--------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-----------
T ss_pred CCcCCC-CC--------C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-----------
Confidence 777775 55 2 45677777777777774 444 45677777777777765 443 21
Q ss_pred CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccc-------ce
Q 044724 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI-------QI 611 (782)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~ 611 (782)
++|+.|+|++|+|+ .+|. |.. +| +.
T Consensus 180 --------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 180 --------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp --------------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEE
T ss_pred --------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceE
Confidence 24667777777777 5555 544 55 77
Q ss_pred eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724 612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN 655 (782)
Q Consensus 612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 655 (782)
|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 777777777 4666666677777777777777777776666543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4.4e-20 Score=197.55 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=113.3
Q ss_pred cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC-ccccCCC
Q 044724 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP-QSLSKCF 402 (782)
Q Consensus 324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 402 (782)
+.++.++++++ .+|..+ .+++++|+|++|+++...+.+|. ++++|++|+|++|++.+.+| .+|.+++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~--------~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFS--------GFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSST--------TCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHc--------CCCCCCEEECcCCCCCCccChhHhhcch
Confidence 56788888888 788765 35788888888888766555666 67888888888888765544 4567777
Q ss_pred CCcE-EECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccC-CcceeeCCCCccccchhhhcC
Q 044724 403 LLKG-LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD-NNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 403 ~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~~~ 480 (782)
++++ +.+++|+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +++....+ ..|..
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------~~f~~ 151 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFVG 151 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--------TSSTT
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc--------cchhh
Confidence 7654 55566777776677777777777777777777766666666666677777755 34543333 22333
Q ss_pred C-CCCCEEEcCCCcceeecCccccCCCCCCEEEccC
Q 044724 481 L-SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 515 (782)
Q Consensus 481 l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 515 (782)
+ ..++.|++++|+++...+ ......+|+.+++++
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSD 186 (350)
T ss_dssp SBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTT
T ss_pred cchhhhhhccccccccCCCh-hhccccchhHHhhcc
Confidence 3 346666777777664333 333445566666654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.8e-20 Score=199.09 Aligned_cols=135 Identities=21% Similarity=0.093 Sum_probs=69.6
Q ss_pred CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCC-ccccCcCCCCE-EeCCCCccccCCChhccCCCCCceE
Q 044724 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQH-IIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
+++++|+|++|+++.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.++.|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345566666666654444455556666666666665544333 34555555443 3444455555555555566666666
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCC-CcceeecCccccCCC-CCCEEEccCCcCCC
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH-NNLEGEVPVQLCGLN-QLQLLDLSDNNLHG 520 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 520 (782)
++++|++++..+ ..+....++..|++.+ +++....+..|..+. .++.|++++|+++.
T Consensus 110 ~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 110 LISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccCCc--------hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 666665553333 2223334455555533 344444444444443 35556666665553
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.4e-20 Score=181.96 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=11.5
Q ss_pred ccceeecccccccccCCccccCCC
Q 044724 608 RIQILNLSHNNLTGTIPSTFSKLE 631 (782)
Q Consensus 608 ~L~~L~Ls~N~l~~~~p~~~~~l~ 631 (782)
+|+.|+++.|+++|.+|..++.++
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CHHHHHHHHHhCCceeeccCcccc
Confidence 344444555555555554444443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.4e-20 Score=180.80 Aligned_cols=134 Identities=24% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI 457 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 457 (782)
++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444455555555555555555444444455555555555555555444444455555555555
Q ss_pred cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
++|++++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 108 ~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 108 NTNQLQSLPD--------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCcccCH--------hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 5555543333 22344455555555555555444444445555555555555443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.9e-20 Score=207.36 Aligned_cols=134 Identities=26% Similarity=0.378 Sum_probs=66.5
Q ss_pred CCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC
Q 044724 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT 426 (782)
Q Consensus 347 ~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 426 (782)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l----------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL----------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC----------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred CccEEEeCCCCCCc-cCHhH----------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence 55555555555543 33321 134555555555555 333 234455555555555554 443 333
Q ss_pred CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN 506 (782)
Q Consensus 427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 506 (782)
+|++|++++|++++ +|. .+++|+.|++++|++++ +| . .+++|++|+|++|++++ +|. |. +
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp--------~---~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LP--------E---LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC--------C---CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CC--------C---cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 55555555555554 333 34555555555555553 34 1 23455555555555553 333 33 5
Q ss_pred CCCEEEccCCcCC
Q 044724 507 QLQLLDLSDNNLH 519 (782)
Q Consensus 507 ~L~~L~Ls~N~l~ 519 (782)
+|+.|+|++|+|+
T Consensus 181 ~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 181 SLEALDVSTNLLE 193 (571)
T ss_dssp TCCEEECCSSCCS
T ss_pred CCCEEECcCCCCC
Confidence 5555555555555
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=4.6e-20 Score=183.22 Aligned_cols=152 Identities=23% Similarity=0.308 Sum_probs=81.1
Q ss_pred ceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccc
Q 044724 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALH 532 (782)
Q Consensus 453 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 532 (782)
+.++++++.++ .+|.. + .+++++|++++|++++..+..|..+++|++|+|++|++++..|..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~--------l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~---- 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN--------L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---- 78 (220)
T ss_dssp TEEECTTSCCS-SCCSS--------C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT----
T ss_pred CEEEcCCCCcC-cCCCc--------c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC----
Confidence 45666666665 34421 1 145666666666666555555666666666666666655544444332
Q ss_pred ccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccccee
Q 044724 533 ESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612 (782)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 612 (782)
+++|++|+|++|++++..+..|.++++|++|
T Consensus 79 -------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 79 -------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp -------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -------------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 2345555555555554444444555555555
Q ss_pred ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668 (782)
Q Consensus 613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 668 (782)
+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555555555555555555555555555444444555555555555555444
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2.9e-20 Score=199.75 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=51.8
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhh---hcCCCCcEE
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQL---VELNAFVVF 660 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L 660 (782)
+|+.|||++|++++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..| ..+++|++|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 34444444444444444444445555555555555554444455555555555555555553222222 334555555
Q ss_pred EcccCcCcccCCCCccccCC--CCcccccCCCCCCCC
Q 044724 661 SFACNNLSGKIPELTAQFAT--FNESSYKGNPFLCGL 695 (782)
Q Consensus 661 ~ls~N~l~~~~p~~~~~~~~--l~~~~~~gNp~lC~~ 695 (782)
+|++|+|++..+..+..+.. +..+++.+||+.|+|
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 55555555433322223322 244556666666665
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=181.34 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=115.6
Q ss_pred ceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccc
Q 044724 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL 531 (782)
Q Consensus 453 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 531 (782)
+.+++++|.++ .+|.. + .+.+++|+|++|++++..+ ..|..+++|++|+|++|++++..+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~--------~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEH--------I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSC--------C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---
T ss_pred CEeEeCCCCcc-cCccC--------C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---
Confidence 57888888887 45632 1 2456788888888876644 45777888888888888887666555433
Q ss_pred cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccce
Q 044724 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQI 611 (782)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 611 (782)
+++|+.|+|++|++++..|..|..+++|++
T Consensus 80 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 80 --------------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 446778888888887777777778888888
Q ss_pred eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724 612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672 (782)
Q Consensus 612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p 672 (782)
|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888888887777778888888888888888887777778888888888888887776544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=6.1e-19 Score=176.31 Aligned_cols=156 Identities=22% Similarity=0.214 Sum_probs=104.8
Q ss_pred CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccc
Q 044724 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL 531 (782)
Q Consensus 452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 531 (782)
.+.++.+++.++ .+|.. -.++|++|+|++|++++..|..|..+++|++|+|++|+++...+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~----------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAG----------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSC----------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---
T ss_pred CCEeEccCCCcC-ccCCC----------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc---
Confidence 456777777776 45521 1267777777777777766777777777777777777776444433322
Q ss_pred cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccce
Q 044724 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQI 611 (782)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 611 (782)
+++|+.|+|++|++++..+..|..+++|++
T Consensus 87 --------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 87 --------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred --------------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 446777777777777666666677777777
Q ss_pred eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724 612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672 (782)
Q Consensus 612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p 672 (782)
|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus 117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 777777777 566667777777777777777776555666777777777777777766544
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=172.66 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=126.4
Q ss_pred CEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCC
Q 044724 429 QHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL 508 (782)
Q Consensus 429 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 508 (782)
+++++++|.++. +|..+. +.+++|++++|++++..|. ..|..+++|++|+|++|++++..+..|.++++|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~-------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEAT-------GIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCC-------CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCch-------hhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 356666666653 444332 3467788888888766553 346778888888888888887777788888999
Q ss_pred CEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccccee
Q 044724 509 QLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGI 588 (782)
Q Consensus 509 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 588 (782)
++|+|++|++++..|..+.. +++|++|
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------l~~L~~L 110 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKG-----------------------------------------------------LESLKTL 110 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTT-----------------------------------------------------CSSCCEE
T ss_pred CEEECCCCccCccCHhHhcC-----------------------------------------------------CcCCCEE
Confidence 99999999988776665543 4578899
Q ss_pred eccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCc
Q 044724 589 DLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648 (782)
Q Consensus 589 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 648 (782)
+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999998889999999999999999999999999999999999999999999987655
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=180.06 Aligned_cols=171 Identities=22% Similarity=0.351 Sum_probs=106.3
Q ss_pred CcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503 (782)
Q Consensus 424 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 503 (782)
.+++|++|++++|.++.. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++ ++ .+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~---------~l~~l~~L~~L~l~~n~l~~-~~-~l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K---------PLANLKNLGWLFLDENKVKD-LS-SLK 109 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G---------GGTTCTTCCEEECCSSCCCC-GG-GGT
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-c---------ccccCCCCCEEECCCCcCCC-Ch-hhc
Confidence 444555555555555432 2 245555555555555555532 2 14455666666666666653 22 366
Q ss_pred CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhc
Q 044724 504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS 583 (782)
Q Consensus 504 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (782)
.+++|++|++++|++++. + .+.. ++
T Consensus 110 ~l~~L~~L~L~~n~i~~~-~-~l~~-----------------------------------------------------l~ 134 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI-N-GLVH-----------------------------------------------------LP 134 (291)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGGG-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCcCCCC-h-hhcC-----------------------------------------------------CC
Confidence 666666666666666542 1 1111 44
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
+|+.|++++|++++. ..++.+++|+.|+|++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence 667777777777654 467777788888888888876554 7778888888888888875 34 37778888888888
Q ss_pred cCcCcc
Q 044724 664 CNNLSG 669 (782)
Q Consensus 664 ~N~l~~ 669 (782)
+|+++.
T Consensus 209 ~n~i~~ 214 (291)
T 1h6t_A 209 SQECLN 214 (291)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 887765
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.4e-18 Score=172.40 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=60.5
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
+|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|++++..|..|..+++|++|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 45555555555555555555555555555555555554444445555555555555555555555555555555555555
Q ss_pred cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
+|++++..+..+..+.+++.+++.+||+.|+|.
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 555555554444445555555555555555543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=187.52 Aligned_cols=108 Identities=21% Similarity=0.145 Sum_probs=55.2
Q ss_pred cEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhcc-CCCCCceEeccCCcceeeCCCCccccchhhhcCCCC
Q 044724 405 KGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483 (782)
Q Consensus 405 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~ 483 (782)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|++++..| ..|..+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~--------~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--------EAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT--------TTTTTCTT
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh--------hhccCCCC
Confidence 45666666665 3443332 2355555555555555554454 55555555555555554444 23444555
Q ss_pred CCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC
Q 044724 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523 (782)
Q Consensus 484 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 523 (782)
|++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence 5555555555554444445555555555555555544333
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.1e-18 Score=181.17 Aligned_cols=172 Identities=23% Similarity=0.348 Sum_probs=115.5
Q ss_pred cCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724 399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 478 (782)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +| .+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~---------~l 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS---------SL 108 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG---------GG
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch---------hh
Confidence 3455566666666666533 2 35566666666666666665433 6666677777777776654 22 35
Q ss_pred cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV 558 (782)
Q Consensus 479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (782)
..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~------------------------------ 154 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------------------ 154 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG------------------------------
T ss_pred ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc------------------------------
Confidence 6677777777777777643 3566777777788877777653 22211
Q ss_pred ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEec
Q 044724 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638 (782)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 638 (782)
+++|+.|++++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|++
T Consensus 155 -----------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 155 -----------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 207 (291)
T ss_dssp -----------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred -----------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4567888888888876544 7888888888888888885 34 3788888888888
Q ss_pred CCCcccc
Q 044724 639 SYNKLNG 645 (782)
Q Consensus 639 s~N~l~~ 645 (782)
++|+++.
T Consensus 208 ~~n~i~~ 214 (291)
T 1h6t_A 208 FSQECLN 214 (291)
T ss_dssp EEEEEEC
T ss_pred cCCcccC
Confidence 8888875
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=8.7e-21 Score=214.74 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=63.6
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCC-chhhhcCCCCcEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI-PRQLVELNAFVVF 660 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L 660 (782)
+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.+ |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 446677777777777 667777777777777777777775 55 6777777777777777777665 7777777777777
Q ss_pred EcccCcCcccCCC
Q 044724 661 SFACNNLSGKIPE 673 (782)
Q Consensus 661 ~ls~N~l~~~~p~ 673 (782)
++++|++++.+|.
T Consensus 539 ~L~~N~l~~~~~~ 551 (567)
T 1dce_A 539 NLQGNSLCQEEGI 551 (567)
T ss_dssp ECTTSGGGGSSSC
T ss_pred EecCCcCCCCccH
Confidence 7777777776664
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=5.6e-21 Score=216.30 Aligned_cols=203 Identities=23% Similarity=0.153 Sum_probs=144.1
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCc-------------ccccCCccccCcCCCCEEe-CCCCccccC
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN-------------LSGKIPQWLGNLTGLQHII-MPKNHLEGP 441 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~ 441 (782)
.+++|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 4555666666666655 455556666666666665443 2233333444444444444 333221
Q ss_pred CChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724 442 IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521 (782)
Q Consensus 442 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 521 (782)
..|+.+.+++|.++.. | ...|+.|+|++|++++ +|. +..+++|+.|+|++|+++ .
T Consensus 423 --------~~L~~l~l~~n~i~~l-~-------------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKM-E-------------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp --------HHHHHHHHHHHHHHHH-H-------------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred --------chhhhhhhhccccccc-C-------------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 1233334444444421 1 1358999999999995 665 999999999999999999 7
Q ss_pred CCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc
Q 044724 522 IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601 (782)
Q Consensus 522 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 601 (782)
+|..+.. +++|+.|+|++|++++ +|
T Consensus 478 lp~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 478 LPPALAA-----------------------------------------------------LRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp CCGGGGG-----------------------------------------------------CTTCCEEECCSSCCCC-CG-
T ss_pred cchhhhc-----------------------------------------------------CCCCCEEECCCCCCCC-Cc-
Confidence 7776654 5689999999999997 67
Q ss_pred ccccccccceeecccccccccC-CccccCCCCCCEEecCCCccccCCch---hhhcCCCCcEEEc
Q 044724 602 PIGNLTRIQILNLSHNNLTGTI-PSTFSKLEAYRNLDLSYNKLNGKIPR---QLVELNAFVVFSF 662 (782)
Q Consensus 602 ~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip~---~l~~l~~L~~L~l 662 (782)
.++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|. .+..+++|+.||+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8999999999999999999887 99999999999999999999987653 2455899999875
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.6e-18 Score=195.62 Aligned_cols=125 Identities=21% Similarity=0.273 Sum_probs=66.4
Q ss_pred CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI 457 (782)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 457 (782)
..+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 334445555555554332 34555666666666666532 2 35556666666666666654433 555666666666
Q ss_pred cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
++|++++ +| .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++
T Consensus 95 s~N~l~~-l~---------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 95 DENKIKD-LS---------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CSSCCCC-CT---------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCCCCC-Ch---------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence 6666553 22 244555555555555555532 234555555555555555543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.5e-18 Score=195.72 Aligned_cols=169 Identities=23% Similarity=0.328 Sum_probs=119.6
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
..+..+.+..+.+.+.++. .. +++|+.|++++|.+... + .+. .+++|+.|+|++|.+++..+ +..
T Consensus 21 ~~l~~l~l~~~~i~~~~~~--~~-L~~L~~L~l~~n~i~~l-~-~l~--------~l~~L~~L~Ls~N~l~~~~~--l~~ 85 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSV-Q-GIQ--------YLPNVTKLFLNGNKLTDIKP--LTN 85 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH--HH-HTTCCCCBCTTCCCCCC-T-TGG--------GCTTCCEEECTTSCCCCCGG--GGG
T ss_pred HHHHHHhccCCCcccccch--hc-CCCCCEEECcCCCCCCC-h-HHc--------cCCCCCEEEeeCCCCCCChh--hcc
Confidence 3455666777777644442 23 67888888888887643 2 233 67888888888888876544 777
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
+++|+.|+|++|.+.+ +| .+..+++|++|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----------~~l~~ 151 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----------TVLSR 151 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------GGGGS
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----------hhhcc
Confidence 8888888888888874 23 577778888888888887753 4577777888888888877753 24567
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 520 (782)
+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 7778888888887776555 7777778888888777765
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=6.6e-18 Score=168.77 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=54.3
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
+|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 4445555555554333344445555555555555555444444445555555555555554 444444555555555555
Q ss_pred cCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGL 695 (782)
Q Consensus 664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~ 695 (782)
+|++++..+..+..+.+++.+++.+||+.|+|
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 55555444443444444445555555555544
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.3e-17 Score=161.72 Aligned_cols=114 Identities=23% Similarity=0.329 Sum_probs=105.8
Q ss_pred ccceeeccCCccCccCCc-ccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 584 LLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
+++.|++++|++++..+. .|+.+++|++|+|++|+|++.+|..|+++++|++|+|++|+|++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 588999999999977765 5899999999999999999999999999999999999999999998888999999999999
Q ss_pred ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
++|++++.+|..+..+.+++.+++.+||+.|+|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999998888899999999999999999864
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=7e-18 Score=163.63 Aligned_cols=91 Identities=24% Similarity=0.362 Sum_probs=65.3
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 44566777777777766677777777777777777777777666677777777777777777777777777777777777
Q ss_pred cccCcCcccCC
Q 044724 662 FACNNLSGKIP 672 (782)
Q Consensus 662 ls~N~l~~~~p 672 (782)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 77777776554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=161.94 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=38.9
Q ss_pred ccceeeccCCccCccCCcccccccccceeeccccc-ccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN-LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
+|+.|++++|++++..|..++.+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 34444444444444344444455555555555554 33 333 35555555555555555553 22 4555555555555
Q ss_pred ccCcCc
Q 044724 663 ACNNLS 668 (782)
Q Consensus 663 s~N~l~ 668 (782)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 555543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=170.80 Aligned_cols=170 Identities=22% Similarity=0.267 Sum_probs=108.9
Q ss_pred cCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccC
Q 044724 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG 504 (782)
Q Consensus 425 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 504 (782)
+.++..+++++|.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~---------~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA---------GMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT---------TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch---------HHhhCCCCCEEECCCCccCCChh--hcc
Confidence 334445555555555322 34555566666666666552 22 24456666666666666664433 666
Q ss_pred CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcc
Q 044724 505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSL 584 (782)
Q Consensus 505 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (782)
+++|++|++++|++++. |... .++
T Consensus 84 l~~L~~L~L~~N~l~~l-~~~~-------------------------------------------------------~~~ 107 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNL-NGIP-------------------------------------------------------SAC 107 (263)
T ss_dssp CSSCCEEECCSSCCSCC-TTCC-------------------------------------------------------CSS
T ss_pred CCCCCEEECCCCccCCc-Cccc-------------------------------------------------------cCc
Confidence 77777777777776642 2110 025
Q ss_pred cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC 664 (782)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 664 (782)
|+.|++++|++++. +.++.+++|+.|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 67777777777753 3577778888888888888754 3 577788888888888888765 5677788888888888
Q ss_pred CcCccc
Q 044724 665 NNLSGK 670 (782)
Q Consensus 665 N~l~~~ 670 (782)
|++++.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 887765
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.8e-18 Score=199.25 Aligned_cols=157 Identities=21% Similarity=0.242 Sum_probs=89.2
Q ss_pred CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc---------cCCccccCCCCCcEEECcCCcccc
Q 044724 346 PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG---------EIPQSLSKCFLLKGLYLNNNNLSG 416 (782)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~Ls~N~l~~ 416 (782)
+.++.|++..|.+... +. ..++.++|+.|.+.+ ..+..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-------------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~- 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-------------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF- 237 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTSCCS-
T ss_pred CccceEEeeCCCCCcc-hh-------------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-
Confidence 5678888888887753 22 223334444443332 34666777778888888888877
Q ss_pred cCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCccee
Q 044724 417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496 (782)
Q Consensus 417 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 496 (782)
.+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+++ .+| ..++.+++|++|+|++|.++
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--------~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP--------AELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC--------SSGGGGTTCSEEECCSSCCC-
T ss_pred CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC--------hhhcCCCCCCEEECCCCCCC-
Confidence 56666667788888888888887 67777788888888888888887 667 45567778888888888776
Q ss_pred ecCccccCCCCCCEEEccCCcCCCcCCccccc
Q 044724 497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528 (782)
Q Consensus 497 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 528 (782)
.+|..|..+++|++|+|++|++++.+|..+..
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 66777778888888888888887777766543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.5e-18 Score=198.67 Aligned_cols=137 Identities=26% Similarity=0.296 Sum_probs=78.5
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
.++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 4566666666666665 44444555666666666666665 55556666666666666666666 456666666666666
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC-CCEEEccCCcCCCcCCc
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ-LQLLDLSDNNLHGLIPP 524 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~ 524 (782)
+|++|.++ .+| ..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 299 ~L~~N~l~-~lp--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 299 YFFDNMVT-TLP--------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ECCSSCCC-CCC--------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ECCCCCCC-ccC--------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666665 445 23455666666666666666555555433211 12345555655555544
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=158.29 Aligned_cols=114 Identities=21% Similarity=0.370 Sum_probs=107.0
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
++++.|++++|+++ .+|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 36889999999998 78899999999999999999999998999999999999999999999998899999999999999
Q ss_pred ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697 (782)
Q Consensus 663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l 697 (782)
++|++++..+..+..+.+++.+++.+||+.|+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999988887788899999999999999999854
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=154.47 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 456 (782)
+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 65 l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 4444444444443321 12344455555555555555544444555555555555555555554455555555555555
Q ss_pred ccCCc-ceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724 457 ISDNN-ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 457 Ls~N~-l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
+++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 143 L~~n~~i~-~~~---------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 143 LSYNGAIT-DIM---------PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSCTBCC-CCG---------GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ccCCCCcc-ccH---------hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 55555 33 222 24455556666666666553 22 4555666666666666654
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=9.1e-17 Score=164.04 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=128.3
Q ss_pred CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc
Q 044724 320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS 399 (782)
Q Consensus 320 ~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 399 (782)
+.+++.+++++|.++ .++ .+.. +++|+.|++++|.++.. + .+. .+++|++|++++|++++..+ +.
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~--------~l~~L~~L~L~~N~i~~~~~--l~ 82 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQ--------FFTNLKELHLSHNQISDLSP--LK 82 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGG--------GCTTCCEEECCSSCCCCCGG--GT
T ss_pred HHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHh--------hCCCCCEEECCCCccCCChh--hc
Confidence 455677778888777 444 3444 78888888888887643 3 333 67888888888888886544 78
Q ss_pred CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhc
Q 044724 400 KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN 479 (782)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 479 (782)
.+++|++|++++|++++. |. +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+.
T Consensus 83 ~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~---------~l~ 147 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V---------MLG 147 (263)
T ss_dssp TCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G---------GGG
T ss_pred cCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h---------HHc
Confidence 888888888888888753 33 223 7888888888888864 3588888899999999888754 3 367
Q ss_pred CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521 (782)
Q Consensus 480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 521 (782)
.+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 788899999999988865 6688888999999999988765
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.7e-16 Score=168.01 Aligned_cols=288 Identities=12% Similarity=0.074 Sum_probs=150.1
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCc--ccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD--GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL 398 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 398 (782)
.+++.|+++++ +.+.--..+...+++|+.|||++|++. ...+.. ++.++.+.+..|.+ .+.+|
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-----------~~~~~~~~~~~~~I---~~~aF 89 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-----------YPNGKFYIYMANFV---PAYAF 89 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-----------SGGGCCEEECTTEE---CTTTT
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-----------cccccccccccccc---CHHHh
Confidence 45677777654 221111123222577888888888776 222111 22234444444432 23445
Q ss_pred cC--------CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCc
Q 044724 399 SK--------CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 470 (782)
Q Consensus 399 ~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 470 (782)
.+ +++|+.|+|.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+....... .+
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i 167 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW 167 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc
Confidence 55 77888888877 7776666677788888888888887777777777777777766665533210000 00
Q ss_pred cccchhhhcCCCCCC-EEEcCCCc-ceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccc
Q 044724 471 HLLSIEQINGLSGLS-HLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEIS 548 (782)
Q Consensus 471 ~~~~~~~~~~l~~L~-~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (782)
.. ..|..+..|+ .+.+.... +.......-....+++.+.+.++-.. . .+...
T Consensus 168 ~~---~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~---~~~~l------------------- 221 (329)
T 3sb4_A 168 EH---FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-A---DFKLI------------------- 221 (329)
T ss_dssp TT---SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-H---HHHHH-------------------
T ss_pred cc---cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-H---HHHHH-------------------
Confidence 00 2234455555 34333221 11000011112334445544433110 0 00000
Q ss_pred ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCcccc
Q 044724 549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS 628 (782)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 628 (782)
...+++|+.++|++|+++...+.+|.++++|+.|+|++| ++.+.+.+|.
T Consensus 222 ------------------------------~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 222 ------------------------------RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp ------------------------------HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ------------------------------HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 001345666666666666555556666666666666665 5555555666
Q ss_pred CCCCCC-EEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCc
Q 044724 629 KLEAYR-NLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNE 683 (782)
Q Consensus 629 ~l~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 683 (782)
++++|+ .+++.+ +++...+.+|.++++|+.+++++|+++...+..+..+.+++.
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 666666 666666 555455566666666666666666666555554544444443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.3e-16 Score=146.41 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=97.5
Q ss_pred CCCCCEEEcCCCcce-eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 481 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
.++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 366777777777776 56666667777777777777777654 22211
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccC-CccccCCCCCCEEec
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTI-PSTFSKLEAYRNLDL 638 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdL 638 (782)
+++|+.|++++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|+.|++
T Consensus 70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 456777888888877767777777888888888888887542 267788888888888
Q ss_pred CCCccccCCc---hhhhcCCCCcEEEcccCcCccc
Q 044724 639 SYNKLNGKIP---RQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 639 s~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
++|++++..+ ..+..+++|++|++++|.+...
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8888886555 4778888888888888877643
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-15 Score=145.05 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=104.8
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
++|+.|++++|++++..+..|+.+++|++|+|++|++++..+..|+++++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 46899999999999887788899999999999999999888888999999999999999999888888999999999999
Q ss_pred ccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
++|++++..+..+..+.+++.+++.+||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998877766788999999999999999875
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=145.06 Aligned_cols=129 Identities=26% Similarity=0.302 Sum_probs=101.1
Q ss_pred CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccccc
Q 044724 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE 564 (782)
Q Consensus 485 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (782)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+..
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 46777777776 4554442 57888888888876 45544433
Q ss_pred EEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
+++|+.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus 53 -----------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 53 -----------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp -----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 456888888888888777788888889999999999999888888889999999999999998
Q ss_pred cCCchhhhcCCCCcEEEcccCcCccc
Q 044724 645 GKIPRQLVELNAFVVFSFACNNLSGK 670 (782)
Q Consensus 645 ~~ip~~l~~l~~L~~L~ls~N~l~~~ 670 (782)
+..+..|..+++|++|++++|++.+.
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eeChhhhhcCccccEEEeCCCCeecC
Confidence 76666788899999999999988753
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.6e-16 Score=143.06 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=97.1
Q ss_pred CCCCCEEEcCCCcce-eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724 481 LSGLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE 559 (782)
Q Consensus 481 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (782)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 466778888888877 66777777788888888888877754 22211
Q ss_pred cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccccc-CCccccCCCCCCEEec
Q 044724 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT-IPSTFSKLEAYRNLDL 638 (782)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdL 638 (782)
+++|+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++
T Consensus 63 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 63 ----------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 45678888888888877777777788888888888888863 3477888888888888
Q ss_pred CCCccccCCc---hhhhcCCCCcEEEccc
Q 044724 639 SYNKLNGKIP---RQLVELNAFVVFSFAC 664 (782)
Q Consensus 639 s~N~l~~~ip---~~l~~l~~L~~L~ls~ 664 (782)
++|++++..+ ..+..+++|++|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887665 5788888888888763
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4e-15 Score=142.16 Aligned_cols=92 Identities=24% Similarity=0.290 Sum_probs=69.0
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34577777777777766666677778888888888888877777777888888888888888766665667788888888
Q ss_pred cccCcCcccCCC
Q 044724 662 FACNNLSGKIPE 673 (782)
Q Consensus 662 ls~N~l~~~~p~ 673 (782)
+++|++++..|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 888888776653
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=6.8e-14 Score=151.26 Aligned_cols=265 Identities=13% Similarity=0.161 Sum_probs=192.2
Q ss_pred CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK 400 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 400 (782)
..++.+.+.+ .++ .++...+.. .+|+.+.+..+ ++.....+|. + .+|+.+.+.. .++.+.+.+|.+
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~--------~-~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFF--------N-STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTT--------T-CCCCEEECCT-TCCEECSSTTTT
T ss_pred CCccEEEECC-ccC-EehHhhccc-CCccEEEeCCC-ccEECHHhcC--------C-CCceEEEeCC-CccEehHHHhhC
Confidence 4566666654 344 555555553 47888888765 6555555555 3 3688888875 666667778888
Q ss_pred CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480 (782)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 480 (782)
|.+|+.+++++|+++......|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..| ++..-. ..|.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~ 247 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE 247 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc
Confidence 89999999988888866556666 588999998854 77677888999999999999875 443433 34555
Q ss_pred CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc-----CCcccccccccccccCCCCCCCCccccccccccc
Q 044724 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL-----IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE 555 (782)
Q Consensus 481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (782)
.+|+.+.+ .+.++.....+|.+|++|+.+++.+|.+... .+..|.
T Consensus 248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------------------------- 297 (401)
T 4fdw_A 248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------------------------- 297 (401)
T ss_dssp -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT----------------------------
T ss_pred -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh----------------------------
Confidence 68999999 4556667788899999999999988876511 111111
Q ss_pred cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN 635 (782)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 635 (782)
.+++|+.+++. +.++..-..+|.++++|+.++|..| ++...+.+|.++ +|+.
T Consensus 298 -------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 298 -------------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp -------------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred -------------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 15678888888 4477666778888899999998655 776777888888 8999
Q ss_pred EecCCCccccCCchhhhcCC-CCcEEEcccCcCc
Q 044724 636 LDLSYNKLNGKIPRQLVELN-AFVVFSFACNNLS 668 (782)
Q Consensus 636 LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~ 668 (782)
+++++|.+....+..|..++ .++.+.+..|.+.
T Consensus 350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99999888876677777774 6788888776543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.2e-15 Score=141.47 Aligned_cols=133 Identities=24% Similarity=0.189 Sum_probs=70.5
Q ss_pred CCCCEEEccCcccc-ccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724 378 TNVRWLLLEENHFV-GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456 (782)
Q Consensus 378 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 456 (782)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444445555555555555555433 4455555555555555555554555555555555555
Q ss_pred ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC---ccccCCCCCCEEEccCCcCC
Q 044724 457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP---VQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 519 (782)
+++|++++..+. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~-------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTL-------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGG-------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhH-------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555532110 234555666666666666654333 35566666666666666654
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=4.8e-15 Score=156.87 Aligned_cols=76 Identities=17% Similarity=0.057 Sum_probs=41.2
Q ss_pred ccceeeccCCccCccCCcccccccccc-eeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQ-ILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 661 (782)
+|+.++|++| ++..-+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 3444444444 4434444555555555 555555 45544455566666666666666666555555566666665554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.6e-15 Score=138.99 Aligned_cols=129 Identities=23% Similarity=0.186 Sum_probs=85.4
Q ss_pred CCCCCEEEccCcccc-ccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 377 LTNVRWLLLEENHFV-GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 377 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355666666666666 55666666666777777777766654 556667777777777777776666666667777777
Q ss_pred eccCCcceee-CCCCccccchhhhcCCCCCCEEEcCCCcceeecC---ccccCCCCCCEEEccC
Q 044724 456 DISDNNISGS-LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP---VQLCGLNQLQLLDLSD 515 (782)
Q Consensus 456 ~Ls~N~l~~~-~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~ 515 (782)
++++|++++. .+ ..++.+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTI--------EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHH--------GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHH--------HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777776642 22 345667777777777777765544 4567777777777653
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.5e-13 Score=146.87 Aligned_cols=249 Identities=9% Similarity=0.060 Sum_probs=183.7
Q ss_pred ccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc
Q 044724 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE 393 (782)
Q Consensus 314 ~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~ 393 (782)
...|.++ +|+.+++..+ ++ .++...+.. .+|+.+.+.. .++...+.+|. ++++|+.+++.+|+++..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~--------~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFY--------YCYNLKKADLSKTKITKL 195 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTT--------TCTTCCEEECTTSCCSEE
T ss_pred HhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhh--------CcccCCeeecCCCcceEe
Confidence 3445554 6888888766 55 566666653 4788888875 56656666666 688888899888888866
Q ss_pred CCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCcccc
Q 044724 394 IPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473 (782)
Q Consensus 394 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 473 (782)
...+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+++. +.++..-+
T Consensus 196 ~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~------ 264 (401)
T 4fdw_A 196 PASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS------ 264 (401)
T ss_dssp CTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT------
T ss_pred chhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh------
Confidence 666666 578888888744 66667778888888999988875 56566777777 678888884 44553334
Q ss_pred chhhhcCCCCCCEEEcCCCcce-----eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccc
Q 044724 474 SIEQINGLSGLSHLILAHNNLE-----GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEIS 548 (782)
Q Consensus 474 ~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (782)
..|.+|++|+.+++.+|.+. ...+.+|.+|++|+.+++.+ .++......|.+
T Consensus 265 --~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~-------------------- 321 (401)
T 4fdw_A 265 --RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG-------------------- 321 (401)
T ss_dssp --TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT--------------------
T ss_pred --hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC--------------------
Confidence 56788889999998887765 46677888999999999884 355333333332
Q ss_pred ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCcccc
Q 044724 549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS 628 (782)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 628 (782)
+++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|.
T Consensus 322 ---------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 322 ---------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp ---------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred ---------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 457888888655 666667889999 999999999999877788888
Q ss_pred CCC-CCCEEecCCCccc
Q 044724 629 KLE-AYRNLDLSYNKLN 644 (782)
Q Consensus 629 ~l~-~L~~LdLs~N~l~ 644 (782)
+++ +++.|++..+.+.
T Consensus 367 ~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 367 GFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSCTTCCEEEECGGGHH
T ss_pred CCCCCccEEEeCHHHHH
Confidence 884 7889998887654
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.1e-14 Score=137.90 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=99.9
Q ss_pred ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
..+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 4777664 789999999999999999999999999999999999998888888999999999999
Q ss_pred cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
+|+|++..|..+..+.+++.+++.+||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999888778889999999999999999985
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=2.9e-13 Score=146.98 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=172.7
Q ss_pred cccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh
Q 044724 89 AYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV 168 (782)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~ 168 (782)
..+|.++.+|+.+++..+ ++.. ...+|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREI------GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEE------CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred HHHhhCCCCceEEEeCCC-ccCc------chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 355666667777766533 3321 1224666666666666543 44444556666666666665544 22 3444
Q ss_pred hhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCC
Q 044724 169 KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQ 248 (782)
Q Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~ 248 (782)
..|.++..++......... .. ..+|.++++|+.+.+..+.. .+.... +..+++|+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~--i~-~~aF~~c~~L~~i~l~~~~~----~I~~~~------------------F~~c~~L~ 188 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTV--IG-DEAFATCESLEYVSLPDSME----TLHNGL------------------FSGCGKLK 188 (394)
T ss_dssp TTTTTCCCSEEECCTTCCE--EC-TTTTTTCTTCCEEECCTTCC----EECTTT------------------TTTCTTCC
T ss_pred eeeecccccccccCccccc--cc-hhhhcccCCCcEEecCCccc----eecccc------------------ccCCCCce
Confidence 4555554433333222221 11 34566666666666654211 111111 33344444
Q ss_pred eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 044724 249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDV 328 (782)
Q Consensus 249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 328 (782)
.+++..+ ++ .+....+.++..|+.+.+..+..... .......+|+.+.+
T Consensus 189 ~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~-----------------------------~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 189 SIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLG-----------------------------DFALSKTGVKNIII 237 (394)
T ss_dssp BCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC-----------------------------TTTTTTCCCCEEEE
T ss_pred EEEcCCC-ce-EeCchhhccccccceeecCCCceEee-----------------------------hhhcccCCCceEEE
Confidence 4444443 22 34455666777776665554432210 01112234555555
Q ss_pred cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 044724 329 SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLY 408 (782)
Q Consensus 329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 408 (782)
... ++ .+....+..+..++.+.+..+... .....|. .+..++.+....+.+ ....|..+.+|+.+.
T Consensus 238 p~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~--------~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 238 PDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFY--------NCSGLKKVIYGSVIV---PEKTFYGCSSLTEVK 303 (394)
T ss_dssp CTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTT--------TCTTCCEEEECSSEE---CTTTTTTCTTCCEEE
T ss_pred CCC-ce-ecccccccccccceeEEcCCCcce-eeccccc--------cccccceeccCceee---ccccccccccccccc
Confidence 432 22 233333333566666666554322 2223333 456666666555432 223566677777777
Q ss_pred CcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEE
Q 044724 409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLI 488 (782)
Q Consensus 409 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~ 488 (782)
+.++ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++..-. ..|.+|++|+.++
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA--------NAFQGCINLKKVE 372 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT--------TTBTTCTTCCEEE
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH--------HHhhCCCCCCEEE
Confidence 7644 44455566777777777777643 55556677777777777777665 443333 4567777788877
Q ss_pred cCCCcceeecCccccCCCCCCEE
Q 044724 489 LAHNNLEGEVPVQLCGLNQLQLL 511 (782)
Q Consensus 489 L~~N~l~~~~~~~~~~l~~L~~L 511 (782)
+..+ ++ .+..+|.++++|+.+
T Consensus 373 lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ECCC-CE-EhhheecCCCCCcEE
Confidence 7654 22 234567777777654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=2.1e-16 Score=154.11 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=113.5
Q ss_pred ccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724 446 FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF 525 (782)
Q Consensus 446 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 525 (782)
+...+.++.++++.+.+++.+|.. ..+. ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l-~~l~-~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPI-EKMD-ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTC-CCCH-HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcH-hhhh-HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch
Confidence 344556666667777766665520 0000 256677888888888888875 55 7777888888888888887 34443
Q ss_pred cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724 526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN 605 (782)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (782)
+.. +++|+.|++++|++++ +| .++.
T Consensus 89 ~~~-----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 89 DAV-----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHH-----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHH
T ss_pred hhc-----------------------------------------------------CCcCCEEECcCCcCCc-CC-cccc
Confidence 321 4578888888888886 44 5788
Q ss_pred ccccceeecccccccccCC-ccccCCCCCCEEecCCCccccCCchh----------hhcCCCCcEEEcccCcCcc
Q 044724 606 LTRIQILNLSHNNLTGTIP-STFSKLEAYRNLDLSYNKLNGKIPRQ----------LVELNAFVVFSFACNNLSG 669 (782)
Q Consensus 606 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~~ 669 (782)
+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| +|.++.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888888888888885433 46788888888888888888776653 77788888876 565553
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=4.8e-13 Score=145.21 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=38.7
Q ss_pred ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC
Q 044724 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499 (782)
Q Consensus 420 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 499 (782)
..|.++..|+.+.+..+... .....|..+..++.+....+.+ +. ..|..+.+|+.+.+.++ ++....
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~-------~~F~~~~~L~~i~l~~~-i~~I~~ 313 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PE-------KTFYGCSSLTEVKLLDS-VKFIGE 313 (394)
T ss_dssp STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CT-------TTTTTCTTCCEEEECTT-CCEECT
T ss_pred ccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cc-------ccccccccccccccccc-cceech
Confidence 34444555555555444322 3344455555555554444322 11 23445555555555443 333444
Q ss_pred ccccCCCCCCEEEcc
Q 044724 500 VQLCGLNQLQLLDLS 514 (782)
Q Consensus 500 ~~~~~l~~L~~L~Ls 514 (782)
.+|.++++|+.+++.
T Consensus 314 ~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 314 EAFESCTSLVSIDLP 328 (394)
T ss_dssp TTTTTCTTCCEECCC
T ss_pred hhhcCCCCCCEEEeC
Confidence 555555555555543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.3e-14 Score=134.97 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=97.3
Q ss_pred cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC 664 (782)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 664 (782)
-+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367999999997 6777665 7899999999999999999999999999999999999987777789999999999999
Q ss_pred CcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 665 NNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 665 N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
|+|++..+..+..+.+++.+++.+||+.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998877768888999999999999999875
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.8e-14 Score=136.08 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred hcccceeeccCCccCccCCcccccccccceeecccccccccCCc--cccCCCCCCEEecCCCccccCCchh----hhcCC
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS--TFSKLEAYRNLDLSYNKLNGKIPRQ----LVELN 655 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~ 655 (782)
+++|+.|++++|.+++..|..++.+++|++|+|++|+++ .+|. .++.+++|+.|++++|+++ .+|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 345666666666666544444566777777777777775 4444 6677777777777777776 34543 67777
Q ss_pred CCcEEEcccCcCcc
Q 044724 656 AFVVFSFACNNLSG 669 (782)
Q Consensus 656 ~L~~L~ls~N~l~~ 669 (782)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 77777777776643
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5.2e-16 Score=151.31 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=128.1
Q ss_pred hhcCCCCCCEEEcCCCcceeecCc------cccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccc
Q 044724 477 QINGLSGLSHLILAHNNLEGEVPV------QLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFD 550 (782)
Q Consensus 477 ~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (782)
.+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~---------------------- 68 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG---------------------- 68 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------
Confidence 455677888899999999888877 89999999999999999987 55 3332
Q ss_pred ccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC
Q 044724 551 FRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL 630 (782)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 630 (782)
+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .++.+
T Consensus 69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 668999999999999 678888889999999999999996 45 68999
Q ss_pred CCCCEEecCCCccccCCc-hhhhcCCCCcEEEcccCcCcccCCCC----------ccccCCCCcccccCCC
Q 044724 631 EAYRNLDLSYNKLNGKIP-RQLVELNAFVVFSFACNNLSGKIPEL----------TAQFATFNESSYKGNP 690 (782)
Q Consensus 631 ~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~~~~p~~----------~~~~~~l~~~~~~gNp 690 (782)
++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..++.++.++ |||
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 999999999999996433 57899999999999999999887762 34556666544 554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.4e-13 Score=130.14 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=85.0
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
++++.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 36889999999999999999999999999999999999888888999999999999999999887778999999999999
Q ss_pred ccCcCcccCCC
Q 044724 663 ACNNLSGKIPE 673 (782)
Q Consensus 663 s~N~l~~~~p~ 673 (782)
++|++++..+.
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 99999987664
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.6e-13 Score=129.31 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL 398 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 398 (782)
.+++|+.|++++|+++ .+|. +....++|+.|++++|.+++. ..+. .+++|++|++++|.+++..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~--------~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFP--------LLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCC--------CCSSCCEEECCSSCCCEECSCHH
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccc--------cCCCCCEEECCCCcccccCcchh
Confidence 4567777777777777 4543 433244777777777776654 2333 56666666666666665443444
Q ss_pred cCCCCCcEEECcCCcccccCCc--cccCcCCCCEEeCCCCccccCCCh----hccCCCCCceEeccCCcce
Q 044724 399 SKCFLLKGLYLNNNNLSGKIPQ--WLGNLTGLQHIIMPKNHLEGPIPV----EFCQLDWLQILDISDNNIS 463 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~ 463 (782)
..+++|++|++++|+++ .+|. .+..+++|++|++++|.++. +|. .+..+++|+.||+++|...
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 56666666666666664 3333 45555666666666665553 233 2555555555555555543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.1e-13 Score=127.43 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=83.6
Q ss_pred cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF 662 (782)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 662 (782)
++|+.|+|++|++++..|..|+++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 36899999999999999999999999999999999999887778899999999999999999777777999999999999
Q ss_pred ccCcCcccCCC
Q 044724 663 ACNNLSGKIPE 673 (782)
Q Consensus 663 s~N~l~~~~p~ 673 (782)
++|++....+.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999876554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=6.6e-13 Score=141.60 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=97.0
Q ss_pred ceeeccCC-ccCccCCcccccccccceeeccc-ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724 586 SGIDLSCN-KLIGHIPPPIGNLTRIQILNLSH-NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA 663 (782)
Q Consensus 586 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 663 (782)
..++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35789998 888 4788 99999999999996 99999888999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
+|+|++..|..+..+. ++.+++.+|++.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999988777555554 8999999999999985
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=6e-11 Score=128.61 Aligned_cols=128 Identities=10% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
++..|+.+.+.++.. .....+|.++.+|+.+.+. +.+.......|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 566666666654433 2445566777777777775 3454455566777777777777654 555566677777778777
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcC
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL 518 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 518 (782)
.+..+ ++ .++. ..|.+|++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 340 ~ip~s-v~-~I~~-------~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 340 AIPSS-VT-KIPE-------SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTT-CC-BCCG-------GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EECcc-cC-EEhH-------hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 77544 43 2332 567777888888887776431 3566677788777766654
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=2.9e-10 Score=123.26 Aligned_cols=86 Identities=12% Similarity=0.234 Sum_probs=61.4
Q ss_pred ccccCCC-CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc---CcCcCChhhhcCCCCCCEEEcccCCCCCccCCCC
Q 044724 120 REVTRLN-NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR---LEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG 195 (782)
Q Consensus 120 ~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (782)
.+|.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..|. ++ .|+..+|..+.+|+.+.+..+ ++... ..+
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~-~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID-SEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC-TTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh-hhh
Confidence 4577774 5888888754 676677888888888888887764 55 666667888888887776654 33332 466
Q ss_pred CCCCCCccEEeccc
Q 044724 196 FPHFKSLEHLDMSY 209 (782)
Q Consensus 196 l~~l~~L~~L~L~~ 209 (782)
|..+.+|+.+.+..
T Consensus 133 F~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 133 FHHCEELDTVTIPE 146 (394)
T ss_dssp TTTCTTCCEEECCT
T ss_pred hhhhcccccccccc
Confidence 77777777777764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=9e-14 Score=148.84 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=24.1
Q ss_pred cccccccceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchhhh
Q 044724 603 IGNLTRIQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQLV 652 (782)
Q Consensus 603 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 652 (782)
+...++|++|+|++|.|+.. ++..+...++|++|||++|.|+......+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 34444555555555555432 223333445556666666655544333333
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=6.3e-12 Score=133.97 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=90.6
Q ss_pred hcccceeeccC-CccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEE
Q 044724 582 LSLLSGIDLSC-NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF 660 (782)
Q Consensus 582 l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 660 (782)
+++|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 45799999996 999998889999999999999999999999999999999999999999999987777777776 9999
Q ss_pred EcccCcCcccCCC-CccccCCCCcccccCCCCCCCC
Q 044724 661 SFACNNLSGKIPE-LTAQFATFNESSYKGNPFLCGL 695 (782)
Q Consensus 661 ~ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~lC~~ 695 (782)
++++|++....+- .+..+.......+..+...|..
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 9999999864321 1122222233344556667754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=2.4e-13 Score=145.47 Aligned_cols=171 Identities=20% Similarity=0.161 Sum_probs=94.9
Q ss_pred CCCcEEEccCCcCCccCChhhhhc----CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724 321 KSLRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396 (782)
Q Consensus 321 ~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 396 (782)
+.|+.|++++|.++......+... .++|++|+|++|.++......+.. .+++|++|+|++|.++.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-------VFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-------HHHTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-------HHHhccHhhcCCCCCCHHHHH
Confidence 456677777776664333333221 146677777777665432222221 244566777777766543332
Q ss_pred cc-----cCCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccccCC----ChhccCCCCCceEeccCCcce
Q 044724 397 SL-----SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGPI----PVEFCQLDWLQILDISDNNIS 463 (782)
Q Consensus 397 ~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 463 (782)
.+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.++... +..+...++|++|+|++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 22 2345677777777776542 3334455667777777777766432 444556667777777777776
Q ss_pred eeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccc
Q 044724 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL 502 (782)
Q Consensus 464 ~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 502 (782)
+.....+. ..+...++|++|+|++|.++......+
T Consensus 225 ~~g~~~l~----~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 225 DTAALALA----RAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHH----HHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHH----HHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 43221111 234456677777777777765443333
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=1.9e-08 Score=108.23 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=59.7
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455 (782)
Q Consensus 376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 455 (782)
++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 4555666655543 34344445555666666665432 333334455556666666665555555555555566666666
Q ss_pred eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL 505 (782)
Q Consensus 456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 505 (782)
++..+ ++..-. ..|.+|++|+.+.+..+ ++.....+|.++
T Consensus 316 ~lp~~-l~~I~~--------~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 316 TLPTA-LKTIQV--------YAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp ECCTT-CCEECT--------TTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred EcCcc-ccEEHH--------HHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 55433 332212 34455555555555433 333344445444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=9.2e-08 Score=102.89 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=72.9
Q ss_pred CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724 319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL 398 (782)
Q Consensus 319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 398 (782)
.+.+|+.+.+..+ +. .++...+..+..|+.+.+..+ ++......|. ++.+|+.+.+..+ ++.....+|
T Consensus 215 ~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~--------~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 215 YGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ--------NCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp TCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTT--------TCTTCCEEEECCC-CSEECTTTT
T ss_pred cccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccc--------eeehhcccccccc-ceecccccc
Confidence 3445555555433 22 233333333556666666543 3333333333 4666666666443 443444566
Q ss_pred cCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724 399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN 460 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 460 (782)
.++.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66777777777666666555566777777777777543 55455666777777777776544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.7e-09 Score=114.59 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=43.2
Q ss_pred hcccceeeccCCccCccCCcccc---cccccceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchhhhc-
Q 044724 582 LSLLSGIDLSCNKLIGHIPPPIG---NLTRIQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVE- 653 (782)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~- 653 (782)
+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34566666666665533222221 355666666666666542 2333344566666666666665433333333
Q ss_pred CCCCcEEEcccCc
Q 044724 654 LNAFVVFSFACNN 666 (782)
Q Consensus 654 l~~L~~L~ls~N~ 666 (782)
+ ...++++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2445665554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=1.8e-09 Score=114.36 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=91.7
Q ss_pred ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh--cCCCCCCEEEcCC--Ccce
Q 044724 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI--NGLSGLSHLILAH--NNLE 495 (782)
Q Consensus 420 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--~~l~~L~~L~L~~--N~l~ 495 (782)
..+..+++|+.|++++|.-. .++. + .+++|+.|++..|.++.... ..+ ..+++|+.|+|+. |...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l--------~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV--------EDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH--------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH--------HHHHHccCCCCcEEEEeccccccc
Confidence 34455566666666655211 1222 2 25667777776666543211 122 2567777777642 2211
Q ss_pred ee-----cCccc--cCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724 496 GE-----VPVQL--CGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568 (782)
Q Consensus 496 ~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (782)
+. +...+ ..+++|++|+|.+|.+.+..+..+...
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a--------------------------------------- 275 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES--------------------------------------- 275 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------------------------------------
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------------------------------------
Confidence 11 11122 247888899888888764332222110
Q ss_pred EecCCeeeecchhhcccceeeccCCccCcc----CCcccccccccceeecccccccccCCccccC-CCCCCEEecCCCc
Q 044724 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIGNLTRIQILNLSHNNLTGTIPSTFSK-LEAYRNLDLSYNK 642 (782)
Q Consensus 569 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~LdLs~N~ 642 (782)
..+++|+.|||+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+|++.|+
T Consensus 276 -----------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 -----------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp -----------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred -----------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 0156788999999988763 3445567788999999999887543333332 2 3568888887
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=4.7e-10 Score=112.53 Aligned_cols=109 Identities=22% Similarity=0.213 Sum_probs=64.4
Q ss_pred ccCCCCCcE--EeCCCCCCC---CcchhhcCCCCCCCEEEccCCcCcC--cCChhhhcCCCCCCEEEcccCCCCCccCCC
Q 044724 122 VTRLNNLKM--FDLSGNSFN---NSILSSLTRLSSVRSLKLSYNRLEG--SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQ 194 (782)
Q Consensus 122 l~~l~~L~~--L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (782)
|...+.|+. ++++.|... ..++....++++|++|+|++|.+++ .+|. .+..+++|++|+|++|++++.....
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhh
Confidence 333444554 566666432 1112222457788888888888774 3333 5567788888888888887752123
Q ss_pred CCCCCCCccEEecccCcccccccch-------HHHhhcCCCCCeEeCC
Q 044724 195 GFPHFKSLEHLDMSYAHIALNTNFL-------QIIGESMPSLKHLSLS 235 (782)
Q Consensus 195 ~l~~l~~L~~L~L~~n~~~~~~~~~-------~~l~~~l~~L~~L~L~ 235 (782)
.+..+ +|++|+|++ |.+.+.+| ..+.. +++|+.||=.
T Consensus 216 ~l~~l-~L~~L~L~~--Npl~~~~~~~~~y~~~il~~-~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGL-KLEELWLDG--NSLCDTFRDQSTYISAIRER-FPKLLRLDGH 259 (267)
T ss_dssp GGTTS-CCSEEECTT--STTGGGCSSHHHHHHHHHHH-CTTCCEESSC
T ss_pred hcccC-CcceEEccC--CcCccccCcchhHHHHHHHH-CcccCeECCc
Confidence 33444 788888888 44554333 23444 8888888643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.8e-07 Score=92.38 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred ccccceeecccccccc--cCCccccCCCCCCEEecCCCccccCCchhhhcCC--CCcEEEcccCcCcccCC
Q 044724 606 LTRIQILNLSHNNLTG--TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN--AFVVFSFACNNLSGKIP 672 (782)
Q Consensus 606 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~~~~p 672 (782)
+++|+.|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. .|+.|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3444444444444444 2233344444444444444444432 1222222 44445555555444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=7.2e-08 Score=91.99 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=47.5
Q ss_pred cCcCCCCEEeCCCCccccC----CChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc--CCCccee
Q 044724 423 GNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL--AHNNLEG 496 (782)
Q Consensus 423 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L--~~N~l~~ 496 (782)
...++|++|+|++|.+... +...+...++|++|+|++|.++..--..+. ..+...++|++|+| ++|.+..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~----~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV----EALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH----HGGGGCSSCCEEECCCCSSCCCH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH----HHHHhCCCceEEEecCCCCCCCH
Confidence 3344555555555554422 122333445566666666665532111010 33455566777777 6666653
Q ss_pred e----cCccccCCCCCCEEEccCCcCC
Q 044724 497 E----VPVQLCGLNQLQLLDLSDNNLH 519 (782)
Q Consensus 497 ~----~~~~~~~l~~L~~L~Ls~N~l~ 519 (782)
. +...+...++|++|+|++|.+.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 2233445567777777777664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=9.2e-08 Score=91.23 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=45.3
Q ss_pred cCCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccccC----CChhccCCCCCceEec--cCCcceeeCCC
Q 044724 399 SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDI--SDNNISGSLPS 468 (782)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~p~ 468 (782)
...++|++|+|++|.+... +...+...++|++|+|++|.|+.. +...+...++|++|+| ++|.++.....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344455555555555432 122233345555555555555432 2334445556666666 55665532211
Q ss_pred CccccchhhhcCCCCCCEEEcCCCcce
Q 044724 469 CFHLLSIEQINGLSGLSHLILAHNNLE 495 (782)
Q Consensus 469 ~~~~~~~~~~~~l~~L~~L~L~~N~l~ 495 (782)
.+. ..+...++|++|+|++|.+.
T Consensus 142 ~l~----~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIA----NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH----HHHHHCSSCCEEECCCSSHH
T ss_pred HHH----HHHHhCCCcCEEeccCCCCC
Confidence 111 33444566677777666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=4.3e-06 Score=77.54 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc-CcCcCChhhhcCC----CCCCEEEcccCC-CCCccCCCCCCCCC
Q 044724 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR-LEGSIDVKEFDSF----NNLEVLDMKRNE-IDNLVVPQGFPHFK 200 (782)
Q Consensus 127 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~~l~ 200 (782)
+|++|||+++.++......+.++++|++|+|++|. +++. ....+..+ ++|++|+|++|. ++... -..+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 46666666666665555556666777777777664 3311 11123333 357777777764 55443 23455677
Q ss_pred CccEEecccC
Q 044724 201 SLEHLDMSYA 210 (782)
Q Consensus 201 ~L~~L~L~~n 210 (782)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 7777777773
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.3e-05 Score=74.25 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=16.9
Q ss_pred CCCEEEcCCCc-ceeecCccccCCCCCCEEEccCCc
Q 044724 483 GLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNN 517 (782)
Q Consensus 483 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 517 (782)
+|++|+|++|. ++...-..+..+++|++|++++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 45555555543 443323334455555566555553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=5.4e-05 Score=66.95 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=21.7
Q ss_pred CcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724 657 FVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP 696 (782)
Q Consensus 657 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~ 696 (782)
|++|+|++|+|+...+..+..+..++.+++.+|||.|+|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4444444444444444444444455555666777777764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00021 Score=67.50 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=8.5
Q ss_pred ccCCCCCCEEEccCCc
Q 044724 502 LCGLNQLQLLDLSDNN 517 (782)
Q Consensus 502 ~~~l~~L~~L~Ls~N~ 517 (782)
+..-+.|+.|+++.|.
T Consensus 153 L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 153 IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHCSSCCEEECCCCC
T ss_pred HHhCCCcCeEeccCCC
Confidence 3444556666665544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00086 Score=63.30 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=32.6
Q ss_pred cCCCCCCEEeCCCC-CCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc----chhhcCCCCCCCEEEccCCcCc
Q 044724 93 TPFQQLESLSLSAN-NIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS----ILSSLTRLSSVRSLKLSYNRLE 163 (782)
Q Consensus 93 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 163 (782)
..-+.|++|+|++| +|...-- ....+++..-+.|++|+|++|.+.+. +.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44556666666654 4431100 00011244445566666666665532 2223334455566666665554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.002 Score=56.69 Aligned_cols=56 Identities=27% Similarity=0.301 Sum_probs=30.7
Q ss_pred eeeccCCccC-ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724 587 GIDLSCNKLI-GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644 (782)
Q Consensus 587 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 644 (782)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4666666665 24444332 24556666666666555555555556666666555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.79 E-value=14 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=16.4
Q ss_pred hhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcc
Q 044724 143 LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMK 183 (782)
Q Consensus 143 ~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 183 (782)
..+|.+|++|+.+.+..+ ++ .|...+|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 344444444444444433 12 3333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.06 E-value=48 Score=26.74 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=23.8
Q ss_pred cccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCC
Q 044724 391 VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435 (782)
Q Consensus 391 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 435 (782)
+.+-..+|.+|.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3334455666666666666543 3334445566666666665544
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=25.41 E-value=24 Score=18.88 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=7.8
Q ss_pred CCCCCcccceE
Q 044724 51 ATDCCQWANVE 61 (782)
Q Consensus 51 ~~~~C~w~gv~ 61 (782)
.+..|+|+|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34579999864
Done!