BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044725
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 23/135 (17%)
Query: 1 RPDLVAAGNPAMLPREYCEEIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESL 60
RPDLV G+ + E+ EI DRG + SW PQ++VL HPS FLTH WNST ES+
Sbjct: 332 RPDLVIGGS-VIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHC--GWNSTTESI 388
Query: 61 SS---------MSSRGT-----------GMEINQNVKRDEVKVLVRGMMEGDKGKPIKCM 100
+ + + T GMEI+ NVKR+E+ L+ ++ GDKGK +K
Sbjct: 389 CAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQK 448
Query: 101 ALEWKKKAEAATYIG 115
A+E KKKAE T G
Sbjct: 449 AMELKKKAEENTRPG 463
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 27/122 (22%)
Query: 12 MLPREYCEEIRDRGFLVS-WSPQEQVLCHPSDVAFLTHSRWNWNSTIESLSS-------- 62
LP + E + RGF++ W+PQ QVL HPS FLTH WNST+ES+ S
Sbjct: 327 FLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHC--GWNSTLESVVSGIPLIAWP 384
Query: 63 --MSSRGTGMEINQN--------------VKRDEVKVLVRGMMEGDKGKPIKCMALEWKK 106
+ + ++++ V+R+EV +V+G+MEG++GK ++ E K+
Sbjct: 385 LYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKE 444
Query: 107 KA 108
A
Sbjct: 445 AA 446
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 8 GNPA-MLPREYCEEIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESL 60
G+P LP+ + E + +G +V+W+PQ ++L H S FLTHS WNS +E +
Sbjct: 311 GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHS--GWNSVLECI 362
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 13 LPREYCEEIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWN--WNST 56
LP + E+ R G +V W+PQ +VL H + AF+TH WN W S
Sbjct: 315 LPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESV 360
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 12 MLPREYCE--EIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESL 60
+ P + E E+ +G + W+PQ +VL H + F++H WNS +ES+
Sbjct: 319 VFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHC--GWNSILESM 367
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 12 MLPREYCE--EIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESL 60
+ P + E E+ +G + W+PQ +VL H + F++H WNS +ES+
Sbjct: 319 VFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHC--GWNSILESM 367
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 10 PAMLPREYCEEIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESLSSMSSRGTG 69
P +LP E I RG +V+ + + +L + FL HS+ N + + +
Sbjct: 203 PFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK-NIRTVVTGIEMFHK---- 257
Query: 70 MEINQNVKRDEVKVLVRGMMEGDKGKPI---KCMALEWKKKAEAATYI 114
+++ D + LVRG+ D + + K +++ +K EA YI
Sbjct: 258 -SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYI 304
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 27 LVSWSPQEQVLCHPSDVAFLTHSRWN 52
L W PQ +L HP AF+TH N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGAN 97
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 10 PAMLPREYCEEIRDRGFLVSWSPQEQVLCHPSDVAFLTHSRWNWNSTIESLSSMSSRGTG 69
P +LP E I RG +V+ + + +L + FL HS+ N + + +
Sbjct: 214 PFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK-NIRTVVTGIEXFHK---- 268
Query: 70 MEINQNVKRDEVKVLVRGMMEGDKGKPI---KCMALEWKKKAEAATYI 114
+++ D + LVRG+ D + + K +++ +K EA YI
Sbjct: 269 -SLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQPHQKVEAQVYI 315
>pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 55 STIESLSSMSSRGTGMEINQNV 76
ST E +S +S RG GM++ +NV
Sbjct: 200 STKEKVSEVSGRGVGMDVVKNV 221
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus
Pfu-1862794- 001
Length = 262
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 40 PSDVAFLTHSRWNWNSTIESLSSMS--SRGTGMEINQNVKRD--------EVKVLVRGMM 89
P + AFL R T + S+S SRG G EI ++VKR E+ L G +
Sbjct: 137 PGEGAFLNGKRIKVRKTPDEKPSISFYSRGKGHEIVKHVKRTRTLGAIALELAYLAMGAL 196
Query: 90 EG 91
+G
Sbjct: 197 DG 198
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 54 NSTIESLSSMSSRGTGMEINQNVKRDEVKVLVRGMME 90
NST S +SS+G M++ + +E+K+ G+++
Sbjct: 96 NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQ 132
>pdb|2D7M|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin C
Length = 115
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 2 PDLVAAGNPAMLPREYCEEIRDRG 25
P L A+G PA LP E+ + RD G
Sbjct: 19 PGLNASGIPASLPVEFTIDARDAG 42
>pdb|4A17|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 135
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 76 VKRDEVKVLVRGMMEGDKGKPIKCMALEW 104
V++D+ ++VRG +G+KGK + +W
Sbjct: 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKW 77
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 55 STIESLSSMSSRGTGMEINQNV 76
ST E +S +S RG GM++ +NV
Sbjct: 143 STKEKVSEVSGRGVGMDVVKNV 164
>pdb|2CH4|A Chain A, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|2CH4|B Chain B, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|3UR1|A Chain A, The Structure Of A Ternary Complex Between Chea Domains P4
And P5 With Chew And With A Truncated Fragment Of Tm14,
A Chemoreceptor Analog From Thermotoga Maritima
Length = 320
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 55 STIESLSSMSSRGTGMEINQNV 76
ST E +S +S RG GM++ +NV
Sbjct: 141 STKEKVSEVSGRGVGMDVVKNV 162
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
Length = 189
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 55 STIESLSSMSSRGTGMEINQNV 76
ST E +S +S RG GM++ +NV
Sbjct: 141 STKEKVSEVSGRGVGMDVVKNV 162
>pdb|1R5E|A Chain A, Solution Structure Of The Folded Core Of Pseudomonas
Syringae Effector Protein, Avrpto
Length = 115
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 9 NPAMLPREYCEEIRDRGFLVSWSPQEQVLCH 39
NP MLP E +++ R + WS + L H
Sbjct: 70 NPGMLPHENVDDM--RSAITDWSDMREALQH 98
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 90 EGDKGKPIKCMALEWKKKAEAATYIGDHL 118
+GD+GKP+K +W K + D +
Sbjct: 492 QGDQGKPVKPADQDWMKSTDTVGVFSDDI 520
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 46 LTHSR-----WNWNSTIESLS-SMSSRGTGMEINQNVKRDEVKVLVRGMMEGDK 93
LTH + W TI S +M+++ G++I +NV + K+L R EG K
Sbjct: 50 LTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 103
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 46 LTHSR-----WNWNSTIESLS-SMSSRGTGMEINQNVKRDEVKVLVRGMMEGDK 93
LTH + W TI S +M+++ G++I +NV + K+L R EG K
Sbjct: 52 LTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,767,717
Number of Sequences: 62578
Number of extensions: 131178
Number of successful extensions: 315
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 24
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)