BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044727
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/375 (43%), Positives = 232/375 (61%), Gaps = 16/375 (4%)
Query: 13 MQVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPD---CIRFTDM 69
M++++VL MNGGEGD SYA NSA ++ K KP+L + + +L P+ CI+ D+
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 70 GCSSGPNAFLPTLQVIEALDTICSRLKHK--PPILHAFLNDLPGNDFNTVSKSLPSFYER 127
GC+SGPN L +++++D + K++ P + FLNDL NDFN+V K LPSFY +
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 128 LKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLL 187
L+ E G GSC I A PGSF+ RLFP ++ ++S +CL WLS++P LV+E GI
Sbjct: 121 LEKENGRK-IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGT- 178
Query: 188 NKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFI--GNDKYHTG 245
NK + +K S V KAYLDQF DFT+FL+ SEEL + GRM+L I G +
Sbjct: 179 NKGSIYSSKA-SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARN 237
Query: 246 VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISW 305
+L+ M +ND+V EG +E KL+SF+ P+Y P EEV+ ++E EGSF I LET + +
Sbjct: 238 AIDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLY 297
Query: 306 SVGYENNNKGLELNAHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLEM 365
G+ +++ H +A+ VA ++RAV E +LA+HFG AI+ D+FHRF + L +
Sbjct: 298 DAGFSIDDE------HIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPL 351
Query: 366 GLGAYTVLFIYLIKK 380
G G Y L I L KK
Sbjct: 352 GKGFYNNLIISLAKK 366
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 237/382 (62%), Gaps = 18/382 (4%)
Query: 13 MQVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPD---CIRFTDM 69
M++++VL MNGGEGD SYA NS+ + ++ KP+L + + +L P+ C + D+
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNL-FLIRVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 70 GCSSGPNAFLPTLQVIEALDTICSRLKHK--PPILHAFLNDLPGNDFNTVSKSLPSFYER 127
GC+SGPN F +++++D + K++ P + FLNDL NDFN+V K LPSFY
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 128 LKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLL 187
L+ E G GSC I A PGSF+ RLFP ++ ++S +CLHWLS++P LV+E GI +
Sbjct: 120 LEKENGRK-IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV- 177
Query: 188 NKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFI-GNDKY-HTG 245
NK + +K P + KAYLDQF DFT+FL+ SEEL + GRM+L FI D++ H
Sbjct: 178 NKGCIYSSKASRP-PIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN 236
Query: 246 VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISW 305
+L+ M +ND+V EG +E KL+SF+ P+Y P EEV++++E EGSF I LET + +
Sbjct: 237 SMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY 296
Query: 306 SVGY--ENNNKG-----LELNAHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIK 358
G+ +++ +G + + HARA +VA +R++ E +LA+HFG AI+ DL HR
Sbjct: 297 DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKN 356
Query: 359 ISAHLEMGLGAYTVLFIYLIKK 380
+ L G G Y + I L KK
Sbjct: 357 AAKVLRSGKGFYDSVIISLAKK 378
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 210/376 (55%), Gaps = 27/376 (7%)
Query: 13 MQVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYC-NGFPDCIRFTDMGC 71
M V QVL M GG G+NSYA NS R+ TKP+ ++ LY + + D+GC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 72 SSGPNAFLPTLQVIEALDTICSRL-KHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT 130
SSGPNA ++I+ ++ + ++ + P FLNDLPGNDFN + +SLP
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI------- 113
Query: 131 ERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKR 190
+D G CFI PGSF+GRLFP L+ ++SS+ L WLS++P + S NK
Sbjct: 114 --ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES-------NKG 164
Query: 191 DVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGN---DKYHTG-- 245
++ +A TC P SV AY QF+ D FL+ R++E+ GRMVL +G D+ T
Sbjct: 165 NIYMANTC-PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECC 223
Query: 246 -VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHIS 304
+++L+ M LN MV EGLIE K++ F+ P Y P EV I +EGSF I +E S I
Sbjct: 224 LIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIY 283
Query: 305 WSVGYENNNKGLELNAHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLE 364
WS ++ + G + NVA +RAV+E LL +HFG AI++D+FHR+ + I +
Sbjct: 284 WSSCTKDGDGG--GSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
Query: 365 MGLGAYTVLFIYLIKK 380
+ + + LI+K
Sbjct: 342 KEKTKFINVIVSLIRK 357
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 181/370 (48%), Gaps = 36/370 (9%)
Query: 13 MQVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFT--DMG 70
M++E++L M GG+G +SYANNS LL E+L +++ N FT D+G
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 71 CSSGPNAFLPTLQVIE-ALDTICSRLKHK---PPILHAFLNDLPGNDFNTVSKSLPSFYE 126
CSSG N T+ +I+ + I R PP AF +DLP NDFNT+ + LP
Sbjct: 61 CSSGAN----TVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVS 116
Query: 127 RLKTER--GHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGI 184
E D S F+A PGSF+ RLFP ++ +S+F LHWLS++P E V++
Sbjct: 117 NTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP-ESVTDRRS 175
Query: 185 PLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKY-- 242
N+ V + + AY QF+ D FL+ R+ E+K G M L +G
Sbjct: 176 AAYNRGRVFIHGAGEKTTT--AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDP 233
Query: 243 --HTGVFELMGM----VLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIH 296
G L G +D+V EGL+ K + F+ P+Y P +++ ++V++ GSF I
Sbjct: 234 TDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAID 293
Query: 297 QLETSHISWSVGYENNNKGLELNAHARAKNV----ADNIRAVSESLLANHFGSAIMDDLF 352
+L V Y+ + L +N A V A + R+V+ L+ H G + + LF
Sbjct: 294 KL--------VVYKGGSP-LVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLF 344
Query: 353 HRFTIKISAH 362
R + ++H
Sbjct: 345 SRVESRATSH 354
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 167 CLHWLSRMPKELVSECGIPLLNKRD 191
LHWLS MPK + S +PLLN +D
Sbjct: 326 VLHWLSYMPKSVHS--SVPLLNSKD 348
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 272 HFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSV 307
H+ ++ P ++E+RQ IER S ++ QL + + SV
Sbjct: 211 HWNIHGPSMDEIRQAIERYASLDV-QLHVTELDLSV 245
>pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna
Length = 798
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 25 EGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGC 71
EG NS A+NS + EA + SLF +GF DC++ + C
Sbjct: 530 EGSNSQASNSG-ALEAKFE-----EASLFKRIIDGFKDCVQLVNFQC 570
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 247 FELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWS 306
E GMV+N + +G + ++ + F + + N V+ + + E + +H+L + ++
Sbjct: 406 LEFSGMVVNGVAIDGEL-ITFFDEFQYSLIN-AVDSGENIEDVEINARVHRLNHNEFTYK 463
Query: 307 VGYENNNKGLEL 318
+ NNN G L
Sbjct: 464 ITMSNNNDGERL 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,658,613
Number of Sequences: 62578
Number of extensions: 480202
Number of successful extensions: 933
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 10
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)