Query 044727
Match_columns 380
No_of_seqs 152 out of 558
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1E-98 2E-103 747.1 38.3 360 12-379 12-385 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 2.3E-91 5E-96 689.7 30.5 322 48-380 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.6 9.3E-14 2E-18 132.1 18.3 250 21-379 1-256 (258)
4 PRK14103 trans-aconitate 2-met 99.6 9.6E-14 2.1E-18 132.1 16.3 225 28-363 5-232 (255)
5 PRK10258 biotin biosynthesis p 99.4 2E-11 4.4E-16 115.7 16.4 174 27-304 17-190 (251)
6 TIGR02072 BioC biotin biosynth 99.4 5.3E-12 1.1E-16 117.2 12.1 171 27-300 6-176 (240)
7 PTZ00098 phosphoethanolamine N 99.0 3.9E-08 8.5E-13 94.5 19.7 195 62-360 52-246 (263)
8 COG4106 Tam Trans-aconitate me 99.0 3.8E-09 8.3E-14 97.4 11.5 219 62-379 30-255 (257)
9 PLN02233 ubiquinone biosynthes 99.0 6.3E-09 1.4E-13 99.8 13.5 166 62-299 73-247 (261)
10 PLN02336 phosphoethanolamine N 99.0 4.2E-08 9E-13 101.6 20.0 192 62-362 266-460 (475)
11 TIGR00740 methyltransferase, p 99.0 1.4E-08 3.1E-13 95.6 14.3 164 62-294 53-221 (239)
12 COG2226 UbiE Methylase involve 98.9 1.1E-08 2.4E-13 96.8 12.5 163 62-297 51-221 (238)
13 PRK15068 tRNA mo(5)U34 methylt 98.9 3.5E-09 7.7E-14 104.6 8.0 153 63-301 123-275 (322)
14 TIGR02752 MenG_heptapren 2-hep 98.9 8.6E-09 1.9E-13 96.2 10.1 168 63-301 46-219 (231)
15 PLN02244 tocopherol O-methyltr 98.8 6.7E-07 1.5E-11 89.0 20.7 157 62-299 118-277 (340)
16 PRK15451 tRNA cmo(5)U34 methyl 98.8 7.3E-08 1.6E-12 91.6 12.9 162 62-294 56-224 (247)
17 PRK08317 hypothetical protein; 98.8 1.4E-06 3.1E-11 80.5 21.2 160 62-305 19-181 (241)
18 PF01209 Ubie_methyltran: ubiE 98.8 4.8E-09 1E-13 99.2 4.4 166 62-298 47-218 (233)
19 PLN02396 hexaprenyldihydroxybe 98.8 5.5E-08 1.2E-12 96.1 11.2 157 63-301 132-290 (322)
20 PRK11036 putative S-adenosyl-L 98.7 7.8E-08 1.7E-12 91.6 11.1 166 61-302 43-209 (255)
21 TIGR00452 methyltransferase, p 98.7 3.3E-08 7.3E-13 97.3 8.2 151 63-300 122-273 (314)
22 PRK11705 cyclopropane fatty ac 98.7 2.6E-06 5.7E-11 86.2 21.7 200 63-375 168-370 (383)
23 PF08241 Methyltransf_11: Meth 98.7 3.9E-08 8.5E-13 77.6 6.2 95 67-234 1-95 (95)
24 PF13489 Methyltransf_23: Meth 98.7 7.7E-08 1.7E-12 83.7 8.2 138 61-297 21-160 (161)
25 PLN02490 MPBQ/MSBQ methyltrans 98.6 2.5E-07 5.5E-12 92.0 11.6 148 63-305 114-261 (340)
26 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 4.9E-07 1.1E-11 83.1 12.2 167 62-302 39-212 (223)
27 PRK00216 ubiE ubiquinone/menaq 98.6 3.3E-07 7.2E-12 85.1 11.2 173 63-305 52-230 (239)
28 smart00828 PKS_MT Methyltransf 98.5 2.6E-07 5.7E-12 85.8 8.7 146 65-303 2-147 (224)
29 PRK06202 hypothetical protein; 98.5 5E-06 1.1E-10 78.0 15.5 168 61-305 59-227 (232)
30 KOG2940 Predicted methyltransf 98.4 9.5E-07 2.1E-11 82.4 9.3 152 64-299 74-226 (325)
31 PF08242 Methyltransf_12: Meth 98.4 3.6E-07 7.9E-12 73.9 5.2 79 67-171 1-79 (99)
32 TIGR02716 C20_methyl_CrtF C-20 98.4 5.4E-06 1.2E-10 81.1 14.1 154 62-297 149-303 (306)
33 KOG1541 Predicted protein carb 98.4 1.3E-06 2.8E-11 81.1 9.0 140 28-239 21-163 (270)
34 PRK11207 tellurite resistance 98.4 2.4E-06 5.3E-11 78.5 10.2 138 63-299 31-169 (197)
35 PF02353 CMAS: Mycolic acid cy 98.3 0.00011 2.4E-09 71.1 20.2 74 214-301 144-218 (273)
36 PRK00121 trmB tRNA (guanine-N( 98.3 1.6E-06 3.6E-11 79.9 7.2 157 36-262 14-174 (202)
37 PRK11873 arsM arsenite S-adeno 98.3 8.1E-06 1.7E-10 78.3 12.1 149 63-300 78-230 (272)
38 PRK06922 hypothetical protein; 98.3 1.7E-06 3.7E-11 91.9 7.8 116 63-236 419-537 (677)
39 KOG1540 Ubiquinone biosynthesi 98.3 3.3E-06 7.1E-11 80.0 8.5 167 62-297 100-278 (296)
40 TIGR02021 BchM-ChlM magnesium 98.2 6.4E-05 1.4E-09 69.8 16.1 30 272-302 179-208 (219)
41 PF12847 Methyltransf_18: Meth 98.2 8.4E-06 1.8E-10 66.9 9.0 105 63-236 2-111 (112)
42 PF13847 Methyltransf_31: Meth 98.2 3.5E-06 7.5E-11 73.7 6.2 105 62-238 3-112 (152)
43 PLN02336 phosphoethanolamine N 98.1 1.2E-05 2.6E-10 83.3 10.3 135 63-291 38-174 (475)
44 TIGR02081 metW methionine bios 98.1 3.5E-05 7.6E-10 70.3 12.2 27 275-302 143-169 (194)
45 TIGR00477 tehB tellurite resis 98.1 4.4E-06 9.6E-11 76.6 6.3 138 63-299 31-168 (195)
46 PRK11088 rrmA 23S rRNA methylt 98.1 2E-05 4.4E-10 75.9 10.6 76 62-167 85-160 (272)
47 PRK07580 Mg-protoporphyrin IX 98.1 9.9E-05 2.1E-09 68.5 14.9 32 272-304 187-218 (230)
48 PRK05134 bifunctional 3-demeth 98.1 1.4E-05 3E-10 74.7 8.5 95 155-300 111-205 (233)
49 TIGR03438 probable methyltrans 98.0 1.9E-05 4.2E-10 77.3 9.3 114 62-240 63-181 (301)
50 TIGR01983 UbiG ubiquinone bios 98.0 3E-05 6.6E-10 71.7 10.1 158 62-301 45-204 (224)
51 PRK05785 hypothetical protein; 98.0 1.3E-05 2.9E-10 75.3 7.7 75 63-174 52-126 (226)
52 PRK11188 rrmJ 23S rRNA methylt 98.0 5.8E-05 1.2E-09 70.2 11.2 110 63-240 52-169 (209)
53 PRK12335 tellurite resistance 98.0 1.1E-05 2.4E-10 78.3 6.7 137 63-299 121-258 (287)
54 KOG2361 Predicted methyltransf 98.0 4.4E-05 9.5E-10 71.9 9.8 183 45-301 54-238 (264)
55 COG2230 Cfa Cyclopropane fatty 98.0 0.00056 1.2E-08 66.4 17.8 76 208-301 148-224 (283)
56 TIGR00138 gidB 16S rRNA methyl 97.9 3.3E-05 7.1E-10 70.3 7.5 131 63-274 43-173 (181)
57 PF08003 Methyltransf_9: Prote 97.9 4.6E-05 1E-09 74.3 8.8 149 64-298 117-265 (315)
58 smart00138 MeTrc Methyltransfe 97.9 0.00012 2.5E-09 70.6 11.2 50 147-235 192-241 (264)
59 TIGR00091 tRNA (guanine-N(7)-) 97.8 0.00014 3.1E-09 66.5 10.3 115 63-238 17-134 (194)
60 PF03848 TehB: Tellurite resis 97.8 2.8E-05 6E-10 71.5 5.1 139 62-299 30-168 (192)
61 PF13649 Methyltransf_25: Meth 97.8 1.6E-05 3.5E-10 64.7 3.1 100 66-230 1-101 (101)
62 PLN02585 magnesium protoporphy 97.7 0.00072 1.6E-08 66.8 13.9 28 274-302 274-301 (315)
63 TIGR03587 Pse_Me-ase pseudamin 97.7 0.00011 2.5E-09 68.0 7.7 102 30-171 17-118 (204)
64 PRK09489 rsmC 16S ribosomal RN 97.7 9.6E-05 2.1E-09 73.8 7.4 107 64-237 198-304 (342)
65 PRK15001 SAM-dependent 23S rib 97.7 0.00011 2.5E-09 74.2 7.9 108 64-236 230-340 (378)
66 TIGR03840 TMPT_Se_Te thiopurin 97.7 0.00043 9.2E-09 64.7 11.1 152 63-302 35-189 (213)
67 KOG4300 Predicted methyltransf 97.7 0.00018 3.9E-09 66.5 8.3 157 63-304 77-236 (252)
68 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00058 1.3E-08 69.2 12.6 163 64-302 124-288 (390)
69 PF00891 Methyltransf_2: O-met 97.6 0.0012 2.6E-08 62.1 13.6 100 62-238 100-201 (241)
70 KOG1270 Methyltransferases [Co 97.6 0.00027 5.9E-09 67.4 9.0 75 213-299 172-248 (282)
71 PRK00107 gidB 16S rRNA methylt 97.6 0.00021 4.6E-09 65.4 8.1 99 62-237 45-146 (187)
72 TIGR02469 CbiT precorrin-6Y C5 97.6 0.00026 5.6E-09 58.7 7.7 33 63-110 20-52 (124)
73 TIGR00537 hemK_rel_arch HemK-r 97.6 0.00038 8.2E-09 62.6 9.2 124 63-239 20-143 (179)
74 PF05175 MTS: Methyltransferas 97.6 0.00016 3.4E-09 64.8 6.7 111 62-237 31-141 (170)
75 KOG3010 Methyltransferase [Gen 97.6 0.0011 2.4E-08 62.6 12.0 48 151-240 93-140 (261)
76 PLN02232 ubiquinone biosynthes 97.6 0.00018 4E-09 63.9 6.6 109 145-298 31-145 (160)
77 TIGR03534 RF_mod_PrmC protein- 97.5 0.00021 4.5E-09 67.2 6.7 125 62-236 87-217 (251)
78 COG4123 Predicted O-methyltran 97.5 0.00029 6.3E-09 67.1 7.5 38 200-237 134-171 (248)
79 PRK13255 thiopurine S-methyltr 97.4 0.0021 4.7E-08 60.2 12.3 58 216-302 135-192 (218)
80 PTZ00146 fibrillarin; Provisio 97.4 0.0018 4E-08 63.2 12.0 33 64-110 134-166 (293)
81 PHA03411 putative methyltransf 97.4 0.0013 2.8E-08 63.7 10.6 120 63-239 65-186 (279)
82 PRK08287 cobalt-precorrin-6Y C 97.4 0.00039 8.5E-09 63.0 6.7 34 62-110 31-64 (187)
83 TIGR03533 L3_gln_methyl protei 97.3 0.0011 2.4E-08 64.4 9.6 122 63-237 122-252 (284)
84 TIGR00438 rrmJ cell division p 97.3 0.001 2.3E-08 60.3 8.8 26 214-239 124-149 (188)
85 PF05891 Methyltransf_PK: AdoM 97.3 0.00066 1.4E-08 63.3 7.0 144 62-300 55-201 (218)
86 PF05401 NodS: Nodulation prot 97.2 0.0014 2.9E-08 60.4 8.4 46 154-237 102-147 (201)
87 PRK04266 fibrillarin; Provisio 97.2 0.0037 8E-08 58.9 11.4 33 63-110 73-105 (226)
88 PF03141 Methyltransf_29: Puta 97.2 0.00063 1.4E-08 70.2 6.3 75 145-261 169-248 (506)
89 cd02440 AdoMet_MTases S-adenos 97.2 0.0011 2.4E-08 51.4 6.3 102 65-235 1-103 (107)
90 PRK13944 protein-L-isoaspartat 97.2 0.0009 2E-08 61.8 6.6 78 63-170 73-154 (205)
91 TIGR00080 pimt protein-L-isoas 97.2 0.0016 3.5E-08 60.4 8.2 76 62-167 77-155 (215)
92 PF05148 Methyltransf_8: Hypot 97.1 0.0015 3.3E-08 60.6 7.0 89 61-237 71-159 (219)
93 PF07021 MetW: Methionine bios 97.1 0.0055 1.2E-07 56.2 10.5 103 147-305 62-172 (193)
94 COG2227 UbiG 2-polyprenyl-3-me 97.1 0.0012 2.5E-08 62.5 6.1 152 63-300 60-215 (243)
95 PRK00312 pcm protein-L-isoaspa 97.0 0.0012 2.6E-08 61.0 6.1 19 62-80 78-96 (212)
96 PRK14967 putative methyltransf 97.0 0.0067 1.4E-07 56.6 11.1 168 63-291 37-204 (223)
97 PRK11805 N5-glutamine S-adenos 97.0 0.0043 9.3E-08 61.1 9.6 71 64-165 135-208 (307)
98 PRK13942 protein-L-isoaspartat 97.0 0.0029 6.3E-08 58.8 7.9 79 63-168 77-155 (212)
99 PRK14966 unknown domain/N5-glu 96.9 0.0037 8.1E-08 63.9 9.2 72 64-165 253-326 (423)
100 KOG3045 Predicted RNA methylas 96.9 0.0032 7E-08 60.1 7.8 88 61-238 179-266 (325)
101 PLN03075 nicotianamine synthas 96.9 0.0042 9E-08 60.9 8.9 110 62-236 123-233 (296)
102 TIGR00563 rsmB ribosomal RNA s 96.9 0.0064 1.4E-07 62.4 10.6 129 63-240 239-372 (426)
103 TIGR00536 hemK_fam HemK family 96.8 0.0068 1.5E-07 58.8 9.5 127 64-237 116-245 (284)
104 COG2242 CobL Precorrin-6B meth 96.8 0.016 3.6E-07 52.9 11.2 51 189-262 103-153 (187)
105 PRK10901 16S rRNA methyltransf 96.8 0.0054 1.2E-07 63.1 9.1 127 63-240 245-376 (427)
106 PRK09328 N5-glutamine S-adenos 96.8 0.006 1.3E-07 58.2 8.5 24 213-236 215-238 (275)
107 PF06080 DUF938: Protein of un 96.7 0.018 4E-07 53.4 10.8 148 65-297 28-189 (204)
108 PF13659 Methyltransf_26: Meth 96.6 0.0031 6.8E-08 51.9 4.9 112 64-237 2-116 (117)
109 PRK01544 bifunctional N5-gluta 96.6 0.0052 1.1E-07 64.6 7.7 130 63-236 139-269 (506)
110 TIGR00406 prmA ribosomal prote 96.6 0.0039 8.5E-08 60.7 6.1 22 218-239 241-262 (288)
111 PRK14903 16S rRNA methyltransf 96.5 0.0085 1.8E-07 61.8 8.1 130 63-241 238-371 (431)
112 PF03291 Pox_MCEL: mRNA cappin 96.5 0.0079 1.7E-07 59.9 7.3 48 153-237 138-187 (331)
113 PRK00811 spermidine synthase; 96.4 0.021 4.4E-07 55.6 9.9 20 61-80 75-94 (283)
114 COG2813 RsmC 16S RNA G1207 met 96.4 0.0077 1.7E-07 58.9 6.8 112 64-242 160-272 (300)
115 PRK14904 16S rRNA methyltransf 96.4 0.019 4.1E-07 59.4 9.7 128 63-241 251-382 (445)
116 PRK14902 16S rRNA methyltransf 96.3 0.014 3.1E-07 60.2 8.4 128 63-240 251-383 (444)
117 PRK14968 putative methyltransf 96.2 0.079 1.7E-06 47.2 12.0 24 214-237 126-149 (188)
118 PRK00377 cbiT cobalt-precorrin 96.2 0.016 3.4E-07 53.1 7.1 35 62-110 40-74 (198)
119 TIGR03704 PrmC_rel_meth putati 96.0 0.034 7.3E-07 53.2 8.9 32 63-109 87-118 (251)
120 PF12147 Methyltransf_20: Puta 95.9 0.15 3.2E-06 49.9 12.6 59 219-294 232-292 (311)
121 PRK14901 16S rRNA methyltransf 95.9 0.049 1.1E-06 56.1 9.9 30 211-240 359-388 (434)
122 TIGR01177 conserved hypothetic 95.8 0.065 1.4E-06 53.1 10.1 25 215-239 273-297 (329)
123 KOG1331 Predicted methyltransf 95.8 0.009 1.9E-07 57.8 3.7 131 29-240 17-147 (293)
124 COG2890 HemK Methylase of poly 95.5 0.06 1.3E-06 52.4 8.6 124 65-237 113-239 (280)
125 PRK07402 precorrin-6B methylas 95.5 0.084 1.8E-06 48.1 9.1 23 215-237 121-143 (196)
126 PRK01544 bifunctional N5-gluta 95.4 0.032 7E-07 58.7 6.8 138 35-236 323-462 (506)
127 KOG3178 Hydroxyindole-O-methyl 95.4 0.046 1E-06 54.4 7.4 145 62-301 177-331 (342)
128 TIGR00446 nop2p NOL1/NOP2/sun 95.3 0.059 1.3E-06 51.8 7.8 31 210-240 173-203 (264)
129 PF02390 Methyltransf_4: Putat 95.3 0.12 2.6E-06 47.5 9.5 113 65-236 20-133 (195)
130 PRK00517 prmA ribosomal protei 95.2 0.058 1.3E-06 51.3 7.3 19 62-80 119-137 (250)
131 PF05724 TPMT: Thiopurine S-me 95.1 0.24 5.1E-06 46.5 10.9 164 43-302 21-192 (218)
132 KOG1499 Protein arginine N-met 95.1 0.021 4.6E-07 56.7 3.8 105 62-233 60-164 (346)
133 TIGR00417 speE spermidine synt 94.9 0.1 2.3E-06 50.2 7.9 20 217-236 167-186 (270)
134 PRK04457 spermidine synthase; 94.9 0.089 1.9E-06 50.6 7.4 24 217-240 158-181 (262)
135 PLN02366 spermidine synthase 94.5 0.37 8.1E-06 47.6 10.9 20 217-236 187-206 (308)
136 PRK03612 spermidine synthase; 94.4 0.29 6.3E-06 51.8 10.5 61 218-288 397-457 (521)
137 KOG2904 Predicted methyltransf 94.2 0.27 5.9E-06 47.7 8.8 132 63-243 149-292 (328)
138 COG2518 Pcm Protein-L-isoaspar 93.9 0.15 3.1E-06 47.6 6.3 19 62-80 72-90 (209)
139 PRK13943 protein-L-isoaspartat 93.9 0.13 2.9E-06 51.0 6.4 19 63-81 81-99 (322)
140 PF05185 PRMT5: PRMT5 arginine 93.7 0.08 1.7E-06 54.9 4.6 108 63-233 187-294 (448)
141 PRK13256 thiopurine S-methyltr 93.7 0.26 5.7E-06 46.5 7.7 162 44-300 28-197 (226)
142 PHA03412 putative methyltransf 93.4 0.17 3.8E-06 48.1 5.9 36 63-110 50-85 (241)
143 PF01728 FtsJ: FtsJ-like methy 93.2 0.76 1.6E-05 41.1 9.7 37 62-112 23-59 (181)
144 PF11968 DUF3321: Putative met 93.0 0.32 7E-06 45.6 7.1 135 19-240 6-153 (219)
145 PF01135 PCMT: Protein-L-isoas 93.0 0.1 2.2E-06 48.7 3.7 18 63-80 73-90 (209)
146 PRK13168 rumA 23S rRNA m(5)U19 92.9 0.2 4.2E-06 51.8 6.0 18 63-80 298-315 (443)
147 COG0220 Predicted S-adenosylme 92.8 1.2 2.6E-05 42.1 10.7 171 64-301 50-223 (227)
148 PLN02672 methionine S-methyltr 92.7 0.25 5.4E-06 56.3 7.0 25 216-240 258-282 (1082)
149 TIGR03439 methyl_EasF probable 92.7 0.61 1.3E-05 46.3 8.9 67 62-150 76-142 (319)
150 PRK15128 23S rRNA m(5)C1962 me 92.2 1.9 4.2E-05 44.0 12.2 28 210-237 313-340 (396)
151 KOG1500 Protein arginine N-met 92.2 0.59 1.3E-05 46.6 7.9 147 63-278 178-343 (517)
152 PRK00274 ksgA 16S ribosomal RN 92.2 0.049 1.1E-06 52.6 0.5 54 19-82 9-62 (272)
153 PF10294 Methyltransf_16: Puta 91.9 0.19 4.2E-06 45.1 4.1 35 62-111 45-79 (173)
154 KOG3191 Predicted N6-DNA-methy 91.9 1.6 3.4E-05 40.1 9.7 143 44-240 28-172 (209)
155 KOG1975 mRNA cap methyltransfe 91.1 0.39 8.6E-06 47.6 5.5 114 64-239 119-240 (389)
156 PRK01581 speE spermidine synth 91.0 0.52 1.1E-05 47.7 6.3 20 217-236 249-268 (374)
157 smart00650 rADc Ribosomal RNA 90.5 0.58 1.3E-05 41.5 5.6 71 63-165 14-84 (169)
158 KOG2899 Predicted methyltransf 90.2 1.1 2.3E-05 43.0 7.2 62 213-291 186-247 (288)
159 PRK11783 rlmL 23S rRNA m(2)G24 88.7 1 2.2E-05 49.4 6.9 26 212-237 632-657 (702)
160 COG2519 GCD14 tRNA(1-methylade 87.4 4.6 0.0001 38.8 9.6 125 64-269 96-220 (256)
161 PF13679 Methyltransf_32: Meth 86.9 0.8 1.7E-05 39.6 3.9 55 42-109 7-61 (141)
162 COG2264 PrmA Ribosomal protein 86.6 0.46 9.9E-06 46.7 2.4 32 62-109 162-193 (300)
163 TIGR00478 tly hemolysin TlyA f 86.5 0.67 1.5E-05 43.8 3.4 34 62-111 75-108 (228)
164 PRK03522 rumB 23S rRNA methylu 86.4 0.79 1.7E-05 45.1 4.0 18 63-80 174-191 (315)
165 PF02384 N6_Mtase: N-6 DNA Met 84.7 4.1 9E-05 39.6 8.2 134 63-238 47-185 (311)
166 COG1352 CheR Methylase of chem 84.4 12 0.00026 36.3 11.0 43 62-110 96-138 (268)
167 PF06325 PrmA: Ribosomal prote 84.3 0.77 1.7E-05 45.1 2.8 18 63-80 162-179 (295)
168 PF05219 DREV: DREV methyltran 84.1 4.4 9.4E-05 39.2 7.7 19 62-80 94-112 (265)
169 PF01234 NNMT_PNMT_TEMT: NNMT/ 84.1 1.5 3.2E-05 42.3 4.6 82 157-299 157-238 (256)
170 PRK11727 23S rRNA mA1618 methy 83.9 1.1 2.4E-05 44.6 3.7 33 62-109 114-146 (321)
171 COG2263 Predicted RNA methylas 83.8 0.52 1.1E-05 43.3 1.3 18 63-80 46-63 (198)
172 PRK14896 ksgA 16S ribosomal RN 82.4 0.6 1.3E-05 44.6 1.1 19 63-81 30-48 (258)
173 PTZ00338 dimethyladenosine tra 81.2 1.4 3.1E-05 43.2 3.3 21 63-83 37-57 (294)
174 COG4976 Predicted methyltransf 80.8 1.1 2.4E-05 42.6 2.2 60 219-302 208-267 (287)
175 TIGR00755 ksgA dimethyladenosi 80.7 0.63 1.4E-05 44.2 0.6 21 62-82 29-49 (253)
176 PRK11933 yebU rRNA (cytosine-C 79.5 6.4 0.00014 41.2 7.6 25 216-240 222-246 (470)
177 PRK10909 rsmD 16S rRNA m(2)G96 79.4 1.6 3.6E-05 40.3 2.9 18 63-80 54-71 (199)
178 COG0500 SmtA SAM-dependent met 77.7 7.1 0.00015 30.8 6.0 22 219-240 138-159 (257)
179 PRK04148 hypothetical protein; 74.8 8.3 0.00018 33.5 5.8 19 62-80 16-35 (134)
180 COG1189 Predicted rRNA methyla 71.0 3.7 8.1E-05 39.1 3.0 47 48-112 67-113 (245)
181 TIGR02085 meth_trns_rumB 23S r 70.9 4.4 9.6E-05 40.9 3.7 18 64-81 235-252 (374)
182 PRK04338 N(2),N(2)-dimethylgua 69.5 5 0.00011 40.8 3.8 62 24-109 28-89 (382)
183 TIGR00095 RNA methyltransferas 68.7 4.8 0.0001 36.7 3.1 20 63-82 50-69 (189)
184 PRK11524 putative methyltransf 67.5 10 0.00022 36.7 5.4 22 215-236 59-80 (284)
185 TIGR00479 rumA 23S rRNA (uraci 66.6 5.4 0.00012 40.9 3.4 19 63-81 293-311 (431)
186 KOG1271 Methyltransferases [Ge 66.5 6.6 0.00014 36.2 3.5 16 65-80 70-85 (227)
187 COG4122 Predicted O-methyltran 64.1 23 0.0005 33.3 6.8 36 61-110 58-93 (219)
188 COG0030 KsgA Dimethyladenosine 62.9 14 0.0003 35.7 5.1 52 63-118 31-94 (259)
189 PF07091 FmrO: Ribosomal RNA m 61.8 5.9 0.00013 38.0 2.4 63 61-126 104-186 (251)
190 PF08123 DOT1: Histone methyla 61.1 20 0.00043 33.3 5.7 18 63-80 43-60 (205)
191 PF08704 GCD14: tRNA methyltra 60.8 34 0.00074 32.7 7.4 21 64-84 42-62 (247)
192 PRK05031 tRNA (uracil-5-)-meth 60.1 10 0.00022 38.2 3.9 18 64-81 208-225 (362)
193 TIGR02143 trmA_only tRNA (urac 58.8 11 0.00023 38.0 3.8 18 64-81 199-216 (353)
194 PLN02823 spermine synthase 58.6 53 0.0011 32.9 8.6 20 61-80 102-121 (336)
195 KOG3420 Predicted RNA methylas 57.6 6.5 0.00014 35.0 1.7 19 62-80 48-66 (185)
196 KOG1269 SAM-dependent methyltr 54.8 20 0.00042 36.4 4.9 29 145-173 165-193 (364)
197 PRK11760 putative 23S rRNA C24 52.7 13 0.00029 37.4 3.3 38 44-81 188-230 (357)
198 COG2521 Predicted archaeal met 52.5 53 0.0011 31.6 7.0 58 145-240 190-249 (287)
199 PRK13699 putative methylase; P 51.6 29 0.00062 32.6 5.2 21 216-236 52-72 (227)
200 KOG3115 Methyltransferase-like 51.4 7.4 0.00016 36.5 1.1 18 63-80 61-78 (249)
201 TIGR01444 fkbM_fam methyltrans 50.6 8 0.00017 32.6 1.2 16 65-80 1-16 (143)
202 PF09243 Rsm22: Mitochondrial 50.4 16 0.00034 35.4 3.3 19 62-80 33-51 (274)
203 PF06859 Bin3: Bicoid-interact 49.9 15 0.00031 30.9 2.5 24 213-236 21-44 (110)
204 PHA03297 envelope glycoprotein 48.0 2.5 5.5E-05 37.2 -2.3 57 61-117 38-104 (185)
205 PF07942 N2227: N2227-like pro 47.1 80 0.0017 30.7 7.5 64 213-300 179-242 (270)
206 PF07757 AdoMet_MTase: Predict 46.9 9.3 0.0002 32.1 0.9 19 62-80 58-76 (112)
207 PRK00050 16S rRNA m(4)C1402 me 46.6 43 0.00093 33.0 5.7 28 212-239 212-239 (296)
208 PRK00050 16S rRNA m(4)C1402 me 45.1 24 0.00052 34.7 3.7 32 64-109 21-52 (296)
209 PLN02781 Probable caffeoyl-CoA 44.2 12 0.00026 35.3 1.4 35 62-110 68-102 (234)
210 PF09445 Methyltransf_15: RNA 43.8 12 0.00027 33.5 1.3 18 65-82 2-19 (163)
211 PRK10611 chemotaxis methyltran 43.4 29 0.00063 34.0 3.9 42 62-110 115-156 (287)
212 TIGR02987 met_A_Alw26 type II 42.8 25 0.00054 37.1 3.7 41 62-109 31-71 (524)
213 COG4627 Uncharacterized protei 39.5 58 0.0013 29.4 4.8 36 203-238 48-88 (185)
214 KOG4589 Cell division protein 39.4 44 0.00096 31.1 4.2 21 63-83 70-90 (232)
215 COG5124 Protein predicted to b 39.4 24 0.00051 32.2 2.4 36 245-280 40-75 (209)
216 PF02527 GidB: rRNA small subu 38.0 35 0.00077 31.1 3.4 30 65-109 51-80 (184)
217 PF03962 Mnd1: Mnd1 family; I 37.0 22 0.00048 32.6 1.9 34 248-281 30-63 (188)
218 PF02268 TFIIA_gamma_N: Transc 35.5 31 0.00067 24.7 2.0 21 246-266 11-31 (49)
219 PF14904 FAM86: Family of unkn 33.5 49 0.0011 27.3 3.2 31 328-358 67-99 (100)
220 PF02375 JmjN: jmjN domain; I 33.2 17 0.00037 24.0 0.4 15 274-288 1-15 (34)
221 PHA00457 inhibitor of host bac 33.1 43 0.00094 25.0 2.5 30 269-299 25-58 (63)
222 PF01596 Methyltransf_3: O-met 32.8 27 0.00058 32.4 1.8 23 62-84 45-67 (205)
223 COG0357 GidB Predicted S-adeno 32.0 80 0.0017 29.6 4.8 32 63-109 68-99 (215)
224 KOG0820 Ribosomal RNA adenine 30.6 1.3E+02 0.0028 29.6 6.0 52 61-113 57-120 (315)
225 cd08788 CARD_NOD2_2_CARD15 Cas 30.3 47 0.001 26.3 2.5 41 247-288 13-53 (81)
226 PF09851 SHOCT: Short C-termin 28.0 35 0.00076 21.8 1.2 18 252-269 6-23 (31)
227 PF10672 Methyltrans_SAM: S-ad 27.7 94 0.002 30.4 4.7 65 212-284 214-278 (286)
228 smart00400 ZnF_CHCC zinc finge 27.4 48 0.001 23.7 1.9 21 64-84 22-42 (55)
229 PF05958 tRNA_U5-meth_tr: tRNA 27.0 57 0.0012 32.7 3.1 17 65-81 199-215 (352)
230 PF01739 CheR: CheR methyltran 26.4 25 0.00053 32.4 0.3 44 61-110 30-73 (196)
231 KOG0451 Predicted 2-oxoglutara 26.1 1.4E+02 0.003 32.3 5.6 67 192-271 390-475 (913)
232 KOG1501 Arginine N-methyltrans 26.0 50 0.0011 34.5 2.4 23 61-83 65-87 (636)
233 PF04672 Methyltransf_19: S-ad 25.8 1E+02 0.0023 29.9 4.5 71 219-307 173-244 (267)
234 KOG2920 Predicted methyltransf 25.4 35 0.00075 33.4 1.2 34 43-80 100-134 (282)
235 PF01564 Spermine_synth: Sperm 25.3 1.2E+02 0.0027 28.7 4.9 23 217-239 172-194 (246)
236 PF09597 IGR: IGR protein moti 25.3 71 0.0015 23.6 2.5 27 205-231 13-39 (57)
237 PF00398 RrnaAD: Ribosomal RNA 25.1 93 0.002 29.6 4.1 22 62-83 30-51 (262)
238 KOG1136 Predicted cleavage and 25.1 1.4E+02 0.0031 30.1 5.3 51 216-279 219-269 (501)
239 COG1565 Uncharacterized conser 25.0 1.2E+02 0.0026 30.9 4.8 24 61-84 76-99 (370)
240 TIGR00308 TRM1 tRNA(guanine-26 24.8 70 0.0015 32.5 3.3 64 26-109 14-77 (374)
241 PF01739 CheR: CheR methyltran 24.8 1.5E+02 0.0033 27.2 5.2 44 153-235 131-174 (196)
242 COG0144 Sun tRNA and rRNA cyto 23.7 7.5E+02 0.016 24.8 10.5 135 64-242 158-294 (355)
243 PF04816 DUF633: Family of unk 23.5 38 0.00081 31.4 1.0 24 278-302 103-126 (205)
244 PF02167 Cytochrom_C1: Cytochr 23.5 76 0.0016 29.9 3.0 51 145-223 133-183 (219)
245 KOG4068 Uncharacterized conser 23.1 1E+02 0.0022 27.6 3.5 57 247-304 68-128 (174)
246 COG2609 AceE Pyruvate dehydrog 22.8 3E+02 0.0064 30.7 7.5 97 203-307 199-300 (887)
247 PRK11783 rlmL 23S rRNA m(2)G24 22.6 6E+02 0.013 28.0 10.3 20 63-82 191-210 (702)
248 PLN02476 O-methyltransferase 22.5 50 0.0011 32.2 1.7 21 62-82 118-138 (278)
249 COG0275 Predicted S-adenosylme 22.2 1E+02 0.0022 30.6 3.7 34 206-239 214-247 (314)
250 TIGR00006 S-adenosyl-methyltra 22.0 90 0.002 30.9 3.4 28 212-239 216-243 (305)
251 COG4798 Predicted methyltransf 21.9 1.3E+02 0.0028 28.2 4.1 17 64-80 50-66 (238)
252 smart00545 JmjN Small domain f 21.2 56 0.0012 22.6 1.2 16 273-288 2-17 (42)
253 TIGR03099 dCO2ase_PEP1 pyridox 21.2 4.9E+02 0.011 26.1 8.6 53 14-76 186-238 (398)
254 PF02636 Methyltransf_28: Puta 21.2 98 0.0021 29.2 3.4 23 62-84 18-40 (252)
255 PF02475 Met_10: Met-10+ like- 20.6 85 0.0018 29.0 2.7 32 63-109 102-133 (200)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1e-98 Score=747.08 Aligned_cols=360 Identities=31% Similarity=0.488 Sum_probs=323.4
Q ss_pred cccceeeeccCCCCCcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCC-CceEEEeecCCCCccchHHHHHHHHHHHH
Q 044727 12 AMQVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFP-DCIRFTDMGCSSGPNAFLPTLQVIEALDT 90 (380)
Q Consensus 12 ~~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~ 90 (380)
+|+++++|||+||+|++||++||.+|+.++.+++|+|+++|++++.+..+ ++++|||||||+|+||+.+|+.||++|++
T Consensus 12 ~m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~ 91 (386)
T PLN02668 12 NMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSK 91 (386)
T ss_pred cceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999988654434 68999999999999999999999999999
Q ss_pred HhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHh--hhhcC-CCCCCcceeeccCCCcccCCCCCCccceEEcccc
Q 044727 91 ICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERL--KTERG-HDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFC 167 (380)
Q Consensus 91 ~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~--~~~~~-~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~a 167 (380)
+|++.+.++|++||+|||||+||||+||++||.+.+.+ ..... ....++||++|||||||+||||++|+||+||++|
T Consensus 92 ~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~s 171 (386)
T PLN02668 92 RYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFS 171 (386)
T ss_pred HhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeecc
Confidence 99887777889999999999999999999999876532 11100 0111469999999999999999999999999999
Q ss_pred cccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCC---Ccch
Q 044727 168 LHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGND---KYHT 244 (380)
Q Consensus 168 lhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~---~~~~ 244 (380)
|||||++|+.+.++.+ +.||||+||++.++ |+|.+||++||++||..||++||+||+|||+|+++++||. +..+
T Consensus 172 lHWLS~vP~~l~d~~s-~~~Nkg~iyi~~~s--~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~ 248 (386)
T PLN02668 172 LHWLSQVPESVTDKRS-AAYNKGRVFIHGAS--ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248 (386)
T ss_pred ceecccCchhhccCCc-ccccCCceEecCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccC
Confidence 9999999999987664 89999999999885 8899999999999999999999999999999999999996 2211
Q ss_pred ----hHHHH-HHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEEeecCCcCccCCcccchhh
Q 044727 245 ----GVFEL-MGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENNNKGLELN 319 (380)
Q Consensus 245 ----~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~~~~~~~~~~~~~~d~~ 319 (380)
.+|+. +.++|++||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++..|+. +.+.. +|
T Consensus 249 ~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~-~~~~~--~d-- 323 (386)
T PLN02668 249 GGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPL-VVNEP--DD-- 323 (386)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcc-cccCc--cc--
Confidence 56776 9999999999999999999999999999999999999999999999999999999876 44321 23
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhChhHHHHHHHHHHHHHHHHHHh--ccCCEEEEEEEEEe
Q 044727 320 AHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLEM--GLGAYTVLFIYLIK 379 (380)
Q Consensus 320 ~~~~a~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~v~~~l~~--~~~~~~~~~~~l~r 379 (380)
....++.+++++||++||+|.+|||++|+|+||+||+++++++++. ++.++++++++|.-
T Consensus 324 ~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 324 AAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSF 385 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEec
Confidence 5678889999999999999999999999999999999999999998 89999999999863
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=2.3e-91 Score=689.68 Aligned_cols=322 Identities=45% Similarity=0.773 Sum_probs=271.0
Q ss_pred HHHHHHhhhc-cCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcC-CCCCcceEEecCCCCCchhhhhccCcchH
Q 044727 48 LHESLFDLYC-NGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLK-HKPPILHAFLNDLPGNDFNTVSKSLPSFY 125 (380)
Q Consensus 48 l~~ai~~~~~-~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~-~~~p~~~v~~nDLp~NDFn~lf~~l~~~~ 125 (380)
|++||.+++. ...+++++|||||||+|+||+.+|+.||++|+++|++.+ .++|+|||||||||+||||+||++||.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 5788988875 346789999999999999999999999999999998776 67889999999999999999999999998
Q ss_pred HHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHH
Q 044727 126 ERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHK 205 (380)
Q Consensus 126 ~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ 205 (380)
++++. .++||++|||||||+||||++||||+||++||||||++|+.+.++++ ++||||+||+++++ +++|.+
T Consensus 81 ~~~~~------~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~-~~~Nkg~i~~~~~~-~~~v~~ 152 (334)
T PF03492_consen 81 QSLKK------FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSS-PAWNKGNIYISRTS-PPEVAK 152 (334)
T ss_dssp HHHHH------TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTS-TTTSTTTSSSSTTS--HHHHH
T ss_pred hccCC------CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccc-cccccCcEEEecCC-CHHHHH
Confidence 77654 27899999999999999999999999999999999999999999875 99999999999888 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCC---cch---hHHHHHHHHHHHHHHccCcccccccccccCcccCC
Q 044727 206 AYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDK---YHT---GVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPC 279 (380)
Q Consensus 206 ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~---~~~---~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps 279 (380)
||++||++||.+||++||+||+|||+|+++++|+++ ... .+|++|+++|+|||.||+|++|++|+||+|+|+||
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps 232 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS 232 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence 999999999999999999999999999999999983 211 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeEeEEEEEeecCCcCccC-CcccchhhHHHHHHHHHHHHHHHhhHHHHHhhChhHHHHHHHHHHHH
Q 044727 280 VEEVRQVIEREGSFNIHQLETSHISWSVGYEN-NNKGLELNAHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIK 358 (380)
Q Consensus 280 ~eE~~~~ie~~GsF~I~~~e~~~~~~~~~~~~-~~~~~d~~~~~~a~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~ 358 (380)
++|++++|+++|+|+|+++|+++.+|.. ++. .....| ...+|+.+++++||++||+|.+|||++++|+||+||+++
T Consensus 233 ~eEv~~~I~~~gsF~I~~le~~~~~~~~-~~~~~~~~~d--~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~ 309 (334)
T PF03492_consen 233 PEEVRAIIEEEGSFEIEKLELFEQPWWS-VPDDESWKED--AKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKK 309 (334)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEEEEETCC-TCTTT-STTT--HHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEEEeecccc-cchhhhcccc--hhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 9999999999999999999999966544 221 111223 678999999999999999999999999999999999999
Q ss_pred HHHHHHhcc---CCEEEEEEEEEeC
Q 044727 359 ISAHLEMGL---GAYTVLFIYLIKK 380 (380)
Q Consensus 359 v~~~l~~~~---~~~~~~~~~l~r~ 380 (380)
++++++.+. +++++++++|+||
T Consensus 310 v~~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 310 VAEHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHhhccCCCcEEEEEEEeeC
Confidence 999998776 8899999999998
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=9.3e-14 Score=132.07 Aligned_cols=250 Identities=13% Similarity=0.161 Sum_probs=152.2
Q ss_pred cCCCCCcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCC
Q 044727 21 MNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPP 100 (380)
Q Consensus 21 M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p 100 (380)
|..|+. ..|++++..|.+....++..+. .....+|+|+|||+|..+..+.... |
T Consensus 1 ~~~w~~-~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~ 54 (258)
T PRK01683 1 MSDWNP-SLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------P 54 (258)
T ss_pred CCCCCH-HHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------C
Confidence 555655 7899999988776654443221 1235799999999999987773322 4
Q ss_pred cceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccc
Q 044727 101 ILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVS 180 (380)
Q Consensus 101 ~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~ 180 (380)
..+|+..|+.. ......+... . ..-| +.+++. .+.|++++|+++|+.++||+.+.+
T Consensus 55 ~~~v~gvD~s~-----------~~i~~a~~~~--~--~~~~---~~~d~~-~~~~~~~fD~v~~~~~l~~~~d~~----- 110 (258)
T PRK01683 55 AARITGIDSSP-----------AMLAEARSRL--P--DCQF---VEADIA-SWQPPQALDLIFANASLQWLPDHL----- 110 (258)
T ss_pred CCEEEEEECCH-----------HHHHHHHHhC--C--CCeE---EECchh-ccCCCCCccEEEEccChhhCCCHH-----
Confidence 57899999743 1111111110 0 1123 335663 456778999999999999964311
Q ss_pred cCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHc
Q 044727 181 ECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYE 260 (380)
Q Consensus 181 ~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~e 260 (380)
.+|+.-.+.|+|||.+++.+.+.... ..+.. ++++...
T Consensus 111 ------------------------------------~~l~~~~~~LkpgG~~~~~~~~~~~~--~~~~~----~~~~~~~ 148 (258)
T PRK01683 111 ------------------------------------ELFPRLVSLLAPGGVLAVQMPDNLDE--PSHVL----MREVAEN 148 (258)
T ss_pred ------------------------------------HHHHHHHHhcCCCcEEEEECCCCCCC--HHHHH----HHHHHcc
Confidence 12666688999999999986543211 11222 2333222
Q ss_pred cCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEEeecCCcCccCCcccchhhHHHHHHHHHHHHHHHh-hHHH
Q 044727 261 GLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENNNKGLELNAHARAKNVADNIRAVS-ESLL 339 (380)
Q Consensus 261 G~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~-ep~l 339 (380)
..+...-...-..+.+.++++++...++..| +.++..+... .. + +.+ .+.+..|++++. .|++
T Consensus 149 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~-~-~~~------------~~~~~~~~~~~~~~~~~ 212 (258)
T PRK01683 149 GPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YH-P-MPS------------AQAIVEWVKGTGLRPFL 212 (258)
T ss_pred CchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-ee-e-cCC------------chhhhhhhhhccHHHHH
Confidence 2111111011123457789999999999999 6664444321 11 1 211 233666888754 5666
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHH-hc----cCCEEEEEEEEEe
Q 044727 340 ANHFGSAIMDDLFHRFTIKISAHLE-MG----LGAYTVLFIYLIK 379 (380)
Q Consensus 340 ~~hfge~i~delf~r~~~~v~~~l~-~~----~~~~~~~~~~l~r 379 (380)
.+++++..+++.+.|.+.+.+... .. ...|.-++++-+|
T Consensus 213 -~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 213 -DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred -hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEe
Confidence 899999999999999999988743 22 2455555666655
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=9.6e-14 Score=132.15 Aligned_cols=225 Identities=13% Similarity=0.127 Sum_probs=141.4
Q ss_pred chHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEec
Q 044727 28 NSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLN 107 (380)
Q Consensus 28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~n 107 (380)
..|.+++..|.+....++..+.. ....+|+|+|||+|..+..+... . |..+|+..
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~~----------~~~~~vLDlGcG~G~~~~~l~~~--------~-------p~~~v~gv 59 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVGA----------ERARRVVDLGCGPGNLTRYLARR--------W-------PGAVIEAL 59 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCCC----------CCCCEEEEEcCCCCHHHHHHHHH--------C-------CCCEEEEE
Confidence 67999999998776554433321 34589999999999877665222 1 45788999
Q ss_pred CCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCC
Q 044727 108 DLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLL 187 (380)
Q Consensus 108 DLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~ 187 (380)
|+.. .+. ...+. . .-.| +.+++ ..+.|++++|+++|+.++||+.+.+.
T Consensus 60 D~s~----------~~~-~~a~~-~-----~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~----------- 107 (255)
T PRK14103 60 DSSP----------EMV-AAARE-R-----GVDA---RTGDV-RDWKPKPDTDVVVSNAALQWVPEHAD----------- 107 (255)
T ss_pred ECCH----------HHH-HHHHh-c-----CCcE---EEcCh-hhCCCCCCceEEEEehhhhhCCCHHH-----------
Confidence 9742 111 11111 0 1123 33676 45567899999999999999753211
Q ss_pred CCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCccccc
Q 044727 188 NKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSK 267 (380)
Q Consensus 188 nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~ 267 (380)
+|+.-.+.|+|||++++.+.+.... ..+.. +..+..++.+...
T Consensus 108 ------------------------------~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~----~~~~~~~~~w~~~- 150 (255)
T PRK14103 108 ------------------------------LLVRWVDELAPGSWIAVQVPGNFDA--PSHAA----VRALARREPWAKL- 150 (255)
T ss_pred ------------------------------HHHHHHHhCCCCcEEEEEcCCCcCC--hhHHH----HHHHhccCchhHH-
Confidence 1555588899999999998764221 11222 2222222211110
Q ss_pred cc--ccccCcccCCHHHHHHHHHhcCceeEeEEEEEeecCCcCccCCcccchhhHHHHHHHHHHHHHHHh-hHHHHHhhC
Q 044727 268 LE--SFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENNNKGLELNAHARAKNVADNIRAVS-ESLLANHFG 344 (380)
Q Consensus 268 ~d--~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~-ep~l~~hfg 344 (380)
+. .+..+.++.+++++...+++.| |++...+..... . +. ....+..|+++.. .+++ +.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~-~~------------~~~~~~~~~~~~~~~~~~-~~l~ 213 (255)
T PRK14103 151 LRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--Q-LT------------GEDPVLDWITGTALRPVR-ERLS 213 (255)
T ss_pred hcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--e-CC------------Cchhhhhhhhccchhhhh-hhCC
Confidence 11 1233556789999999999999 987666543211 1 11 1123666777554 5666 6999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 044727 345 SAIMDDLFHRFTIKISAHL 363 (380)
Q Consensus 345 e~i~delf~r~~~~v~~~l 363 (380)
++.++++.+.+.+.+++.+
T Consensus 214 ~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 214 DDSWEQFRAELIPLLREAY 232 (255)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 9889999999999998874
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.37 E-value=2e-11 Score=115.68 Aligned_cols=174 Identities=10% Similarity=0.153 Sum_probs=112.7
Q ss_pred cchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEe
Q 044727 27 DNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFL 106 (380)
Q Consensus 27 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~ 106 (380)
..+|++++.+|+.+...+...+.. ...-+|+|+|||+|.++..+ .+ ...+++.
T Consensus 17 a~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l--------~~---------~~~~v~~ 69 (251)
T PRK10258 17 AAHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYW--------RE---------RGSQVTA 69 (251)
T ss_pred HHhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHH--------HH---------cCCeEEE
Confidence 467999999999988777655532 23568999999999877655 11 1267888
Q ss_pred cCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCC
Q 044727 107 NDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPL 186 (380)
Q Consensus 107 nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~ 186 (380)
.|+.. .+. ...+.. . . ...| +.+++....+|++++|+++|+.++||+.+.+.
T Consensus 70 ~D~s~----------~~l-~~a~~~-~-~--~~~~---~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~---------- 121 (251)
T PRK10258 70 LDLSP----------PML-AQARQK-D-A--ADHY---LAGDIESLPLATATFDLAWSNLAVQWCGNLST---------- 121 (251)
T ss_pred EECCH----------HHH-HHHHhh-C-C--CCCE---EEcCcccCcCCCCcEEEEEECchhhhcCCHHH----------
Confidence 88842 111 111111 0 0 1234 34777676789999999999999999655322
Q ss_pred CCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccc
Q 044727 187 LNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVS 266 (380)
Q Consensus 187 ~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e 266 (380)
+|..-.+.|+|||.+++++++.+... -+.++|..+ + .
T Consensus 122 -------------------------------~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~---~---~- 158 (251)
T PRK10258 122 -------------------------------ALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAV---D---E- 158 (251)
T ss_pred -------------------------------HHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHh---c---c-
Confidence 25556899999999999999876322 234444432 1 1
Q ss_pred cccccccCcccCCHHHHHHHHHhcCceeEeEEEEEeec
Q 044727 267 KLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHIS 304 (380)
Q Consensus 267 ~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~~ 304 (380)
-....-+++.+|+...+...+ +.+ ..+.+...
T Consensus 159 ----~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~ 190 (251)
T PRK10258 159 ----RPHANRFLPPDAIEQALNGWR-YQH-HIQPITLW 190 (251)
T ss_pred ----CCccccCCCHHHHHHHHHhCC-cee-eeeEEEEE
Confidence 011233568999999998766 554 34444444
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=5.3e-12 Score=117.19 Aligned_cols=171 Identities=17% Similarity=0.265 Sum_probs=112.7
Q ss_pred cchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEe
Q 044727 27 DNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFL 106 (380)
Q Consensus 27 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~ 106 (380)
..+|++.+..|+.+...+.+.+.... ..++.+|+|+|||+|..+..+.... |..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEEE
Confidence 46799999999998888887776521 1345799999999999877663321 4577888
Q ss_pred cCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCC
Q 044727 107 NDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPL 186 (380)
Q Consensus 107 nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~ 186 (380)
.|+.....+..-..++ . +-.| +-+++....+|++++|+++++.++||+.+.
T Consensus 64 ~D~~~~~~~~~~~~~~------------~--~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~------------ 114 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS------------E--NVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDDL------------ 114 (240)
T ss_pred EeChHHHHHHHHHhcC------------C--CCeE---EecchhhCCCCCCceeEEEEhhhhhhccCH------------
Confidence 8974322111111111 0 1133 347777778899999999999999997432
Q ss_pred CCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccc
Q 044727 187 LNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVS 266 (380)
Q Consensus 187 ~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e 266 (380)
..+|+...+.|+|||++++..++.+... .+..++..
T Consensus 115 -----------------------------~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---------- 150 (240)
T TIGR02072 115 -----------------------------SQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---------- 150 (240)
T ss_pred -----------------------------HHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH----------
Confidence 1237777999999999999987664221 11111211
Q ss_pred cccccccCcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 267 KLESFHFPMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 267 ~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
....+++.+++...+... |.+..++.
T Consensus 151 ------~~~~~~~~~~~~~~l~~~--f~~~~~~~ 176 (240)
T TIGR02072 151 ------HGLRYLSLDELKALLKNS--FELLTLEE 176 (240)
T ss_pred ------hccCCCCHHHHHHHHHHh--cCCcEEEE
Confidence 123356788888888765 66655543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.00 E-value=3.9e-08 Score=94.46 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=112.4
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..+..+.. . ...+|+..|+.. ......+.... ....-.|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-----------~~~~~a~~~~~-~~~~i~~ 103 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-----------KMVNIAKLRNS-DKNKIEF 103 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-----------HHHHHHHHHcC-cCCceEE
Confidence 357999999999998876621 1 136888999843 11111111111 0001233
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+.+++....+|++++|+++|..++++++ . .|...+|+.
T Consensus 104 ---~~~D~~~~~~~~~~FD~V~s~~~l~h~~---~------------------------------------~d~~~~l~~ 141 (263)
T PTZ00098 104 ---EANDILKKDFPENTFDMIYSRDAILHLS---Y------------------------------------ADKKKLFEK 141 (263)
T ss_pred ---EECCcccCCCCCCCeEEEEEhhhHHhCC---H------------------------------------HHHHHHHHH
Confidence 4578877789999999999988876632 1 123344777
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEE
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETS 301 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~ 301 (380)
-++.|+|||+++++-+....... .-+. +.+.... . .+..++++|+.++++..| |++...+-.
T Consensus 142 i~r~LkPGG~lvi~d~~~~~~~~-~~~~----~~~~~~~----------~--~~~~~~~~~~~~~l~~aG-F~~v~~~d~ 203 (263)
T PTZ00098 142 CYKWLKPNGILLITDYCADKIEN-WDEE----FKAYIKK----------R--KYTLIPIQEYGDLIKSCN-FQNVVAKDI 203 (263)
T ss_pred HHHHcCCCcEEEEEEeccccccC-cHHH----HHHHHHh----------c--CCCCCCHHHHHHHHHHCC-CCeeeEEeC
Confidence 79999999999998765442110 0111 1222111 0 123469999999999999 887666532
Q ss_pred eecCCcCccCCcccchhhHHHHHHHHHHHHHHHhhHHHHHhhChhHHHHHHHHHHHHHH
Q 044727 302 HISWSVGYENNNKGLELNAHARAKNVADNIRAVSESLLANHFGSAIMDDLFHRFTIKIS 360 (380)
Q Consensus 302 ~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~v~ 360 (380)
...|.. -+. ....-+++- +.-+...+|++..+.+-.-+...+.
T Consensus 204 ~~~~~~--------------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 204 SDYWLE--------------LLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred cHHHHH--------------HHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 211211 111 111222222 3444466888777776666655553
No 8
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=3.8e-09 Score=97.42 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=138.3
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
.+.+|.|||||+|.-|.++.+. + |..++..-|-.. .++ ......- ....|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R--------w-------P~A~i~GiDsS~----------~Ml-a~Aa~rl----p~~~f 79 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR--------W-------PDAVITGIDSSP----------AML-AKAAQRL----PDATF 79 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh--------C-------CCCeEeeccCCH----------HHH-HHHHHhC----CCCce
Confidence 4689999999999999988443 3 778888878532 222 1111110 11233
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
.- |+. ...-|....|+++|+-+||||.+-|.. |.+
T Consensus 80 ~~---aDl-~~w~p~~~~dllfaNAvlqWlpdH~~l-----------------------------------------l~r 114 (257)
T COG4106 80 EE---ADL-RTWKPEQPTDLLFANAVLQWLPDHPEL-----------------------------------------LPR 114 (257)
T ss_pred ec---ccH-hhcCCCCccchhhhhhhhhhccccHHH-----------------------------------------HHH
Confidence 22 444 567799999999999999997665554 444
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCccccccccccc-CcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHF-PMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~-P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
--.+|.|||.|.+.|++.-.. +.+.+ +++.++++-. +.++.++.. ----+|+.-|-.++...+ =+|+--++
T Consensus 115 L~~~L~Pgg~LAVQmPdN~de--psH~~----mr~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T 186 (257)
T COG4106 115 LVSQLAPGGVLAVQMPDNLDE--PSHRL----MRETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHT 186 (257)
T ss_pred HHHhhCCCceEEEECCCccCc--hhHHH----HHHHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeee
Confidence 467899999999999865422 22334 3555555532 233333221 222368888888887665 23333222
Q ss_pred EeecCCcCccCCcccchhhHHHHHHHHHHHHHHHhh-HHHHHhhChhHHHHHHHHHHHHHHHHHH-hcc----CCEEEEE
Q 044727 301 SHISWSVGYENNNKGLELNAHARAKNVADNIRAVSE-SLLANHFGSAIMDDLFHRFTIKISAHLE-MGL----GAYTVLF 374 (380)
Q Consensus 301 ~~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~e-p~l~~hfge~i~delf~r~~~~v~~~l~-~~~----~~~~~~~ 374 (380)
.... + . ..+..++.|+++... |++ ..++++-...+.++|..++.+..- ... ..|.-+|
T Consensus 187 ~Y~h--~-l------------~~a~aIvdWvkgTgLrP~L-~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlF 250 (257)
T COG4106 187 TYYH--Q-L------------PGADAIVDWVKGTGLRPYL-DRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLF 250 (257)
T ss_pred eccc--c-C------------CCccchhhheeccccceec-cccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEE
Confidence 2111 0 1 223458999998776 777 889999999999999999987643 222 2345566
Q ss_pred EEEEe
Q 044727 375 IYLIK 379 (380)
Q Consensus 375 ~~l~r 379 (380)
|+-+|
T Consensus 251 iVA~~ 255 (257)
T COG4106 251 IVATR 255 (257)
T ss_pred EEEec
Confidence 66555
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=6.3e-09 Score=99.80 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=95.3
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhc---CCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTER---GHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~---~~~~~~ 138 (380)
...+|+|+|||+|..+..+...+ .|..+|+.-|+.. .++.. .+... ......
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~----------~ml~~-A~~r~~~~~~~~~~ 127 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS----------EQLAV-AASRQELKAKSCYK 127 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH----------HHHHH-HHHHhhhhhhccCC
Confidence 35799999999999776552221 1346888889753 12111 11100 000001
Q ss_pred c-ceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 139 S-CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 139 ~-~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
+ .| +.++...-.+|++|+|++++++++||+.+.. .
T Consensus 128 ~i~~---~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~-----------------------------------------~ 163 (261)
T PLN02233 128 NIEW---IEGDATDLPFDDCYFDAITMGYGLRNVVDRL-----------------------------------------K 163 (261)
T ss_pred CeEE---EEcccccCCCCCCCEeEEEEecccccCCCHH-----------------------------------------H
Confidence 2 24 4477777778999999999999999964321 1
Q ss_pred HHHHHHHHhccCceEEEEeccCCCcc--hhHHHHHHH-HHHHHHH-ccCcccccccccc-cCcccCCHHHHHHHHHhcCc
Q 044727 218 FLKFRSEELKTEGRMVLNFIGNDKYH--TGVFELMGM-VLNDMVY-EGLIEVSKLESFH-FPMYNPCVEEVRQVIEREGS 292 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~~~~~--~~~~~~l~~-al~~mv~-eG~i~~e~~d~f~-~P~Y~ps~eE~~~~ie~~Gs 292 (380)
+|+.-.+.|||||++++..+++.... ..+++.... .+.-+.. -|. .+.+..+. .=-.+++++|+.+.+++.|
T Consensus 164 ~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el~~ll~~aG- 240 (261)
T PLN02233 164 AMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEELEKLALEAG- 240 (261)
T ss_pred HHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHHHHHHHHCC-
Confidence 25666899999999999988765321 022221111 1111100 011 11110000 0012689999999999999
Q ss_pred eeEeEEE
Q 044727 293 FNIHQLE 299 (380)
Q Consensus 293 F~I~~~e 299 (380)
|++....
T Consensus 241 F~~~~~~ 247 (261)
T PLN02233 241 FSSAKHY 247 (261)
T ss_pred CCEEEEE
Confidence 8876543
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.97 E-value=4.2e-08 Score=101.56 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=117.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhh-hhcCCCCCCcc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLK-TERGHDDFGSC 140 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~-~~~~~~~~~~~ 140 (380)
...+|+|+|||+|..++.+. +. ...+|+..|+.. .+. ...+ +..+ ....-.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~--------~~~~v~gvDiS~----------~~l-~~A~~~~~~-~~~~v~ 317 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------EN--------FDVHVVGIDLSV----------NMI-SFALERAIG-RKCSVE 317 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hh--------cCCEEEEEECCH----------HHH-HHHHHHhhc-CCCceE
Confidence 35799999999998776552 21 136788999843 111 1111 1111 111123
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| +-+++....+|++++|+++|..+++|+.+.+ .+|+
T Consensus 318 ~---~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~-----------------------------------------~~l~ 353 (475)
T PLN02336 318 F---EVADCTKKTYPDNSFDVIYSRDTILHIQDKP-----------------------------------------ALFR 353 (475)
T ss_pred E---EEcCcccCCCCCCCEEEEEECCcccccCCHH-----------------------------------------HHHH
Confidence 4 3478888888999999999999999964321 2256
Q ss_pred HHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 221 FRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
.-++.|+|||++++..+...+... . ..+...+. . .-...++.+++.+.+++.| |++..++.
T Consensus 354 ~~~r~LkpgG~l~i~~~~~~~~~~-~-~~~~~~~~---~-------------~g~~~~~~~~~~~~l~~aG-F~~i~~~d 414 (475)
T PLN02336 354 SFFKWLKPGGKVLISDYCRSPGTP-S-PEFAEYIK---Q-------------RGYDLHDVQAYGQMLKDAG-FDDVIAED 414 (475)
T ss_pred HHHHHcCCCeEEEEEEeccCCCCC-c-HHHHHHHH---h-------------cCCCCCCHHHHHHHHHHCC-Ceeeeeec
Confidence 668999999999999887653211 0 01111111 0 0134578999999999999 99875542
Q ss_pred EeecCCcCccCCcccchhhHHHHHHHHHHHHHHHhh--HHHHHhhChhHHHHHHHHHHHHHHHH
Q 044727 301 SHISWSVGYENNNKGLELNAHARAKNVADNIRAVSE--SLLANHFGSAIMDDLFHRFTIKISAH 362 (380)
Q Consensus 301 ~~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~e--p~l~~hfge~i~delf~r~~~~v~~~ 362 (380)
+. ..+...+..+..++-. .-+...+|++..+.+...+.+.+...
T Consensus 415 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 415 RT------------------DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred ch------------------HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 21 2334444444443321 22336688888888777777776543
No 11
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.95 E-value=1.4e-08 Score=95.63 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=96.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..+..+.+.+ ..|..+++.-|+.. ++-...+ .... ..+ ...+-.|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~------~~~~-~~~-~~~~v~~ 110 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCR------QHIA-AYH-SEIPVEI 110 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHH------HHHH-hcC-CCCCeEE
Confidence 34689999999999888774432 12568999999843 1110000 0111 111 0001123
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+.|++..-.++ +.|++++++++||++. . |...+|+.
T Consensus 111 ---~~~d~~~~~~~--~~d~v~~~~~l~~~~~---~------------------------------------~~~~~l~~ 146 (239)
T TIGR00740 111 ---LCNDIRHVEIK--NASMVILNFTLQFLPP---E------------------------------------DRIALLTK 146 (239)
T ss_pred ---EECChhhCCCC--CCCEEeeecchhhCCH---H------------------------------------HHHHHHHH
Confidence 45788665554 4789999999999632 1 22345777
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHH-ccCcccccc----cccccCcccCCHHHHHHHHHhcCcee
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVY-EGLIEVSKL----ESFHFPMYNPCVEEVRQVIEREGSFN 294 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~Y~ps~eE~~~~ie~~GsF~ 294 (380)
-.+.|+|||.++++-....+.. ...+.+.+.+..... +|. +++++ +.+.-.....|++|+.+.+++.| |+
T Consensus 147 i~~~LkpgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 147 IYEGLNPNGVLVLSEKFRFEDT-KINHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred HHHhcCCCeEEEEeecccCCCH-hHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 8999999999999865443221 112223333333332 343 44333 23333445579999999999999 76
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.93 E-value=1.1e-08 Score=96.78 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=104.8
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCC-cc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFG-SC 140 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~-~~ 140 (380)
...+|||+|||||--++.+...+ ++.+|+.-|... .++..-.++... ..+. -.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~---------------g~g~v~~~D~s~----------~ML~~a~~k~~~-~~~~~i~ 104 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV---------------GTGEVVGLDISE----------SMLEVAREKLKK-KGVQNVE 104 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc---------------CCceEEEEECCH----------HHHHHHHHHhhc-cCccceE
Confidence 46999999999999999884443 258889888754 333221111110 1111 23
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| |=|++.+.+||++|+|++.+++.||++.+.+.. |+
T Consensus 105 f---v~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a-----------------------------------------L~ 140 (238)
T COG2226 105 F---VVGDAENLPFPDNSFDAVTISFGLRNVTDIDKA-----------------------------------------LK 140 (238)
T ss_pred E---EEechhhCCCCCCccCEEEeeehhhcCCCHHHH-----------------------------------------HH
Confidence 4 449999999999999999999999998876665 44
Q ss_pred HHHHHhccCceEEEEeccCCCc---chhHHHHHHH-HHHHHHHccCcc--ccccc-ccccCcccCCHHHHHHHHHhcCce
Q 044727 221 FRSEELKTEGRMVLNFIGNDKY---HTGVFELMGM-VLNDMVYEGLIE--VSKLE-SFHFPMYNPCVEEVRQVIEREGSF 293 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~---~~~~~~~l~~-al~~mv~eG~i~--~e~~d-~f~~P~Y~ps~eE~~~~ie~~GsF 293 (380)
--+|.|||||++++.=+.+.+. .......... ++-.+ . .+++ .+++. -....--+|+.+|+.+.+++.| |
T Consensus 141 E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~-g-~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f 217 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLI-G-KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-F 217 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhh-c-eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-c
Confidence 4599999999998887776522 1111112222 12211 1 1121 11111 1134556799999999999999 8
Q ss_pred eEeE
Q 044727 294 NIHQ 297 (380)
Q Consensus 294 ~I~~ 297 (380)
+...
T Consensus 218 ~~i~ 221 (238)
T COG2226 218 EEVR 221 (238)
T ss_pred eEEe
Confidence 8655
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.89 E-value=3.5e-09 Score=104.64 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=93.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
.-+|+|+|||+|..++.++.. . + -+|+.-|. +..+...++.... ..+ ...+-.|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~--------g-------~-~~V~GiD~-S~~~l~q~~a~~~-------~~~-~~~~i~~- 176 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA--------G-------A-KLVVGIDP-SQLFLCQFEAVRK-------LLG-NDQRAHL- 176 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc--------C-------C-CEEEEEcC-CHHHHHHHHHHHH-------hcC-CCCCeEE-
Confidence 369999999999999866221 1 3 35888884 3233222211110 000 0001233
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+++++..-.+ ++++|+++|..+|||..+. ..+|+.-
T Consensus 177 --~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp-----------------------------------------~~~L~~l 212 (322)
T PRK15068 177 --LPLGIEQLPA-LKAFDTVFSMGVLYHRRSP-----------------------------------------LDHLKQL 212 (322)
T ss_pred --EeCCHHHCCC-cCCcCEEEECChhhccCCH-----------------------------------------HHHHHHH
Confidence 5577755555 7899999999999984331 1236667
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEE
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETS 301 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~ 301 (380)
++.|+|||.+++..+........ . ++..+.+..+...++.||.+++...+++.| |++.+++..
T Consensus 213 ~~~LkpGG~lvl~~~~i~~~~~~---~------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 213 KDQLVPGGELVLETLVIDGDENT---V------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred HHhcCCCcEEEEEEEEecCCCcc---c------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 89999999999987643311100 0 111111223333456789999999999999 998777643
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.89 E-value=8.6e-09 Score=96.19 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=96.8
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..+..+...+ .|..+|+..|+.. ..-...+ .... ..+ ..+ +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~------~~~~-~~~---~~~--v 98 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGR------QKVK-DAG---LHN--V 98 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHH------HHHH-hcC---CCc--e
Confidence 4799999999999888763332 1457899999843 1111110 0010 011 112 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
.-+.+++..-.+|++++|++++..++||+++.. .+|+.-
T Consensus 99 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------------------~~l~~~ 137 (231)
T TIGR02752 99 ELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM-----------------------------------------QVLREM 137 (231)
T ss_pred EEEEechhcCCCCCCCccEEEEecccccCCCHH-----------------------------------------HHHHHH
Confidence 224577766668899999999999999964321 236666
Q ss_pred HHHhccCceEEEEeccCCCcch--hHHHH----HHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEe
Q 044727 223 SEELKTEGRMVLNFIGNDKYHT--GVFEL----MGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIH 296 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~--~~~~~----l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~ 296 (380)
.+.|+|||++++.-.+..+... ..+.. +.-.+......+....... ...-..+++.+|+++.+++.| |++.
T Consensus 138 ~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~aG-f~~~ 214 (231)
T TIGR02752 138 YRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL--QESTRDFPGMDELAEMFQEAG-FKDV 214 (231)
T ss_pred HHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHcC-CCee
Confidence 8899999999987766543221 11100 0011111111110000000 011235789999999999999 9988
Q ss_pred EEEEE
Q 044727 297 QLETS 301 (380)
Q Consensus 297 ~~e~~ 301 (380)
+++.+
T Consensus 215 ~~~~~ 219 (231)
T TIGR02752 215 EVKSY 219 (231)
T ss_pred EEEEc
Confidence 77655
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=98.80 E-value=6.7e-07 Score=89.05 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=92.3
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|.++..+.... ..+|+.-|+..+-- ...+ . .....+ ....-.|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~~i-~~a~------~-~~~~~g-~~~~v~~ 172 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPVQA-ARAN------A-LAAAQG-LSDKVSF 172 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHHHH-HHHH------H-HHHhcC-CCCceEE
Confidence 35799999999999988773321 25777778743100 0000 0 001111 0001234
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+-+++.+..||++++|+++|..++|++.+. ..+|+.
T Consensus 173 ---~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~-----------------------------------------~~~l~e 208 (340)
T PLN02244 173 ---QVADALNQPFEDGQFDLVWSMESGEHMPDK-----------------------------------------RKFVQE 208 (340)
T ss_pred ---EEcCcccCCCCCCCccEEEECCchhccCCH-----------------------------------------HHHHHH
Confidence 347887778999999999999999885331 123555
Q ss_pred HHHHhccCceEEEEeccCC---CcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 222 RSEELKTEGRMVLNFIGND---KYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~---~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
-.+.|||||++++...... +.....-..-...+..+.. .+.+|. ..+.+|+..++++.| |...+.
T Consensus 209 ~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v~~ 276 (340)
T PLN02244 209 LARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDIKT 276 (340)
T ss_pred HHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCeeEe
Confidence 5899999999999876543 1110000011111222211 122332 358999999999999 887655
Q ss_pred E
Q 044727 299 E 299 (380)
Q Consensus 299 e 299 (380)
+
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 4
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.79 E-value=7.3e-08 Score=91.58 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=94.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhh---cCCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTE---RGHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~---~~~~~~~ 138 (380)
...+|+|+|||+|.+++.+...+ ..|..+++.-|+.. .++ ...+.. .+.. .+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~----------~ml-~~A~~~~~~~~~~-~~ 110 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP----------AMI-ERCRRHIDAYKAP-TP 110 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCH----------HHH-HHHHHHHHhcCCC-CC
Confidence 45789999999999887763322 11568899999742 121 111111 1100 01
Q ss_pred cceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 139 SCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 139 ~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
-.+ +.|++.+-.++ ..|++++++++||++. .. ...+
T Consensus 111 v~~---~~~d~~~~~~~--~~D~vv~~~~l~~l~~--~~-------------------------------------~~~~ 146 (247)
T PRK15451 111 VDV---IEGDIRDIAIE--NASMVVLNFTLQFLEP--SE-------------------------------------RQAL 146 (247)
T ss_pred eEE---EeCChhhCCCC--CCCEEehhhHHHhCCH--HH-------------------------------------HHHH
Confidence 123 45777554444 4899999999999753 11 1233
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccc---cCccc-CCHHHHHHHHHhcCcee
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFH---FPMYN-PCVEEVRQVIEREGSFN 294 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~---~P~Y~-ps~eE~~~~ie~~GsF~ 294 (380)
|+.-++.|+|||.++++-.-..... ...+.+...+.++....-.+++++..+. --... -|+++..+.+++.| |+
T Consensus 147 l~~i~~~LkpGG~l~l~e~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 147 LDKIYQGLNPGGALVLSEKFSFEDA-KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred HHHHHHhcCCCCEEEEEEecCCCcc-hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 6677999999999999853322111 1222333345554444445554443321 11222 48999999999999 54
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.79 E-value=1.4e-06 Score=80.49 Aligned_cols=160 Identities=23% Similarity=0.192 Sum_probs=93.9
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhh-cCCCCCCcc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTE-RGHDDFGSC 140 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~-~~~~~~~~~ 140 (380)
...+|+|+|||+|..+..+.... .|..+++..|+..+ .....+.. .. ......
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~-----------~~~~a~~~~~~-~~~~~~ 72 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEA-----------MLALAKERAAG-LGPNVE 72 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHH-----------HHHHHHHHhhC-CCCceE
Confidence 35799999999998887663332 14468888887431 11111111 00 101123
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| +.+++....++++++|++++..++||+.+.+ .+|+
T Consensus 73 ~---~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-----------------------------------------~~l~ 108 (241)
T PRK08317 73 F---VRGDADGLPFPDGSFDAVRSDRVLQHLEDPA-----------------------------------------RALA 108 (241)
T ss_pred E---EecccccCCCCCCCceEEEEechhhccCCHH-----------------------------------------HHHH
Confidence 3 3356666678899999999999999975421 1266
Q ss_pred HHHHHhccCceEEEEeccCCC--cchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 221 FRSEELKTEGRMVLNFIGNDK--YHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~--~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
.-.+.|+|||.+++....-+. ........+...+..+... +.-| .+..++...+++.| |.+..+
T Consensus 109 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~l~~aG-f~~~~~ 174 (241)
T PRK08317 109 EIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDH----------FADP---WLGRRLPGLFREAG-LTDIEV 174 (241)
T ss_pred HHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhc----------CCCC---cHHHHHHHHHHHcC-CCceeE
Confidence 668899999999988754221 0000011122212211110 1111 23468999999999 998888
Q ss_pred EEEeecC
Q 044727 299 ETSHISW 305 (380)
Q Consensus 299 e~~~~~~ 305 (380)
+.+....
T Consensus 175 ~~~~~~~ 181 (241)
T PRK08317 175 EPYTLIE 181 (241)
T ss_pred EEEEEec
Confidence 8776553
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.78 E-value=4.8e-09 Score=99.18 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCc-c
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGS-C 140 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~ 140 (380)
...+|+|+|||||..|..+...+ .|..+|+..|+.. .++...-++... ..+.+ -
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~----------~ML~~a~~k~~~-~~~~~i~ 101 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISP----------GMLEVARKKLKR-EGLQNIE 101 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-H----------HHHHHHHHHHHH-TT--SEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCH----------HHHHHHHHHHHh-hCCCCee
Confidence 45799999999999888773222 1457899999854 333221111000 11122 3
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| +-|+.....||++|+|.+++++.||-+.+.+.. |+
T Consensus 102 ~---v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~-----------------------------------------l~ 137 (233)
T PF01209_consen 102 F---VQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERA-----------------------------------------LR 137 (233)
T ss_dssp E---EE-BTTB--S-TT-EEEEEEES-GGG-SSHHHH-----------------------------------------HH
T ss_pred E---EEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHH-----------------------------------------HH
Confidence 4 458998999999999999999999986543222 55
Q ss_pred HHHHHhccCceEEEEeccCCCcc--hhHHHHHHHHHHHHHHccCcccc--ccccc-ccCcccCCHHHHHHHHHhcCceeE
Q 044727 221 FRSEELKTEGRMVLNFIGNDKYH--TGVFELMGMVLNDMVYEGLIEVS--KLESF-HFPMYNPCVEEVRQVIEREGSFNI 295 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~~--~~~~~~l~~al~~mv~eG~i~~e--~~d~f-~~P~Y~ps~eE~~~~ie~~GsF~I 295 (380)
.-.+.|||||++++.=+++.... ...+......+.=.+. .+++.+ .++.. ..-.-+|+.+|+.+.+++.| |+.
T Consensus 138 E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g-~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~ 215 (233)
T PF01209_consen 138 EMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIG-RLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKN 215 (233)
T ss_dssp HHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccc-cccccccccccccccccccccccccccccccccc-ccc
Confidence 55899999999998877765221 1222222111111111 223322 11111 12234689999999999999 875
Q ss_pred eEE
Q 044727 296 HQL 298 (380)
Q Consensus 296 ~~~ 298 (380)
.+.
T Consensus 216 v~~ 218 (233)
T PF01209_consen 216 VEY 218 (233)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.76 E-value=5.5e-08 Score=96.14 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=94.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCC--CCcc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDD--FGSC 140 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~--~~~~ 140 (380)
..+|+|+|||+|..+..+. + +..+|+.-|.-. ......+....... ..-.
T Consensus 132 g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~-----------~~i~~Ar~~~~~~~~~~~i~ 183 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVD-----------KNVKIARLHADMDPVTSTIE 183 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCH-----------HHHHHHHHHHHhcCccccee
Confidence 3699999999999877651 1 236888888743 11111111000000 0112
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| +.+++.+-.++++++|++++..+|||+.+.+ .||+
T Consensus 184 ~---~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~-----------------------------------------~~L~ 219 (322)
T PLN02396 184 Y---LCTTAEKLADEGRKFDAVLSLEVIEHVANPA-----------------------------------------EFCK 219 (322)
T ss_pred E---EecCHHHhhhccCCCCEEEEhhHHHhcCCHH-----------------------------------------HHHH
Confidence 4 4477766567889999999999999966522 2467
Q ss_pred HHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 221 FRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
.-++-|||||+++++++.+.... .+..+. ..+.+. +.+... ......+.+++|+..+++..| |++..+.-
T Consensus 220 ~l~r~LkPGG~liist~nr~~~~--~~~~i~--~~eyi~-~~lp~g----th~~~~f~tp~eL~~lL~~aG-f~i~~~~G 289 (322)
T PLN02396 220 SLSALTIPNGATVLSTINRTMRA--YASTIV--GAEYIL-RWLPKG----THQWSSFVTPEELSMILQRAS-VDVKEMAG 289 (322)
T ss_pred HHHHHcCCCcEEEEEECCcCHHH--HHHhhh--hHHHHH-hcCCCC----CcCccCCCCHHHHHHHHHHcC-CeEEEEee
Confidence 77889999999999998664111 111110 011111 111110 111224789999999999999 99887764
Q ss_pred E
Q 044727 301 S 301 (380)
Q Consensus 301 ~ 301 (380)
+
T Consensus 290 ~ 290 (322)
T PLN02396 290 F 290 (322)
T ss_pred e
Confidence 3
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=7.8e-08 Score=91.61 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
+.+.+|+|+|||+|..+..+.. . ..+|+..|+.. +.-...+ ... ...+.. ..-.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~-~~l~~a~------~~~-~~~g~~-~~v~ 96 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSA-EMIQRAK------QAA-EAKGVS-DNMQ 96 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHH------HHH-HhcCCc-cceE
Confidence 3468999999999998877722 1 25788888743 1111100 001 111100 0113
Q ss_pred eeeccCCCcccC-CCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGR-LFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 141 f~~~vpgSFy~~-l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
|+ -+++.+- .++++++|++++..+|||+.+.+. +|
T Consensus 97 ~~---~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~-----------------------------------------~l 132 (255)
T PRK11036 97 FI---HCAAQDIAQHLETPVDLILFHAVLEWVADPKS-----------------------------------------VL 132 (255)
T ss_pred EE---EcCHHHHhhhcCCCCCEEEehhHHHhhCCHHH-----------------------------------------HH
Confidence 43 3555432 257889999999999999754211 15
Q ss_pred HHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 220 KFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
+.-++.|+|||++++.+....... +-..+..-+ +.+..|+...+.. .-.|.+..+++|+.+.++..| |+++...
T Consensus 133 ~~~~~~LkpgG~l~i~~~n~~~~~--~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~ 206 (255)
T PRK11036 133 QTLWSVLRPGGALSLMFYNANGLL--MHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKT 206 (255)
T ss_pred HHHHHHcCCCeEEEEEEECccHHH--HHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeee
Confidence 555889999999999877553110 001111001 1122333222111 123667789999999999999 9998765
Q ss_pred EEe
Q 044727 300 TSH 302 (380)
Q Consensus 300 ~~~ 302 (380)
-+.
T Consensus 207 gi~ 209 (255)
T PRK11036 207 GVR 209 (255)
T ss_pred eEE
Confidence 543
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.71 E-value=3.3e-08 Score=97.33 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=88.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..+..++. .. + -.|+.-|... .|-..|..... ..+ ......+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~--------~g-------~-~~v~GiDpS~-~ml~q~~~~~~-------~~~-~~~~v~~- 175 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLG--------HG-------A-KSLVGIDPTV-LFLCQFEAVRK-------LLD-NDKRAIL- 175 (314)
T ss_pred CCEEEEeccCCcHHHHHHHH--------cC-------C-CEEEEEcCCH-HHHHHHHHHHH-------Hhc-cCCCeEE-
Confidence 46999999999998765521 11 3 3577777422 22111111111 000 0001122
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
.++++ +.+-+..++|+|+|..+|||+.+. . .+|+.-
T Consensus 176 --~~~~i-e~lp~~~~FD~V~s~gvL~H~~dp--------------------------~---------------~~L~el 211 (314)
T TIGR00452 176 --EPLGI-EQLHELYAFDTVFSMGVLYHRKSP--------------------------L---------------EHLKQL 211 (314)
T ss_pred --EECCH-HHCCCCCCcCEEEEcchhhccCCH--------------------------H---------------HHHHHH
Confidence 44566 334345689999999999995331 1 126777
Q ss_pred HHHhccCceEEEEeccCC-CcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 223 SEELKTEGRMVLNFIGND-KYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~-~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
++.|+|||.|++.++.-+ .... . +...+.+..+.-.++.||.+++...+++.| |+..++..
T Consensus 212 ~r~LkpGG~Lvletl~i~g~~~~----~------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~ 273 (314)
T TIGR00452 212 KHQLVIKGELVLETLVIDGDLNT----V------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILD 273 (314)
T ss_pred HHhcCCCCEEEEEEEEecCcccc----c------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEe
Confidence 999999999999876432 1110 0 011111222334566789999999999999 98776553
No 22
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.70 E-value=2.6e-06 Score=86.24 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=117.5
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..++.+... ...+|+..|+.. .+. ...+... .... +
T Consensus 168 g~rVLDIGcG~G~~a~~la~~----------------~g~~V~giDlS~----------~~l-~~A~~~~--~~l~---v 215 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH----------------YGVSVVGVTISA----------EQQ-KLAQERC--AGLP---V 215 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH----------------CCCEEEEEeCCH----------HHH-HHHHHHh--ccCe---E
Confidence 469999999999988766321 125788888743 111 1111110 0001 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
..+.+++ ..+ ++++|.++|..+++|+.. +++..+++.-
T Consensus 216 ~~~~~D~-~~l--~~~fD~Ivs~~~~ehvg~---------------------------------------~~~~~~l~~i 253 (383)
T PRK11705 216 EIRLQDY-RDL--NGQFDRIVSVGMFEHVGP---------------------------------------KNYRTYFEVV 253 (383)
T ss_pred EEEECch-hhc--CCCCCEEEEeCchhhCCh---------------------------------------HHHHHHHHHH
Confidence 1233454 333 578999999988888421 1334457777
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccC-cccCCHHHHHHHHHhcCceeEeEEEEE
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFP-MYNPCVEEVRQVIEREGSFNIHQLETS 301 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~Y~ps~eE~~~~ie~~GsF~I~~~e~~ 301 (380)
.+.|+|||++++..++...... ....-++.+.+| -+.|+++++...++ .| |.|..++.+
T Consensus 254 ~r~LkpGG~lvl~~i~~~~~~~------------------~~~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~ 313 (383)
T PRK11705 254 RRCLKPDGLFLLHTIGSNKTDT------------------NVDPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNF 313 (383)
T ss_pred HHHcCCCcEEEEEEccCCCCCC------------------CCCCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecC
Confidence 9999999999999887652210 001122345566 36899999999877 35 888776643
Q ss_pred eecCCcCccCCcccchhhHHHHHHHHHHHHHHHhh--HHHHHhhChhHHHHHHHHHHHHHHHHHHhccCCEEEEEE
Q 044727 302 HISWSVGYENNNKGLELNAHARAKNVADNIRAVSE--SLLANHFGSAIMDDLFHRFTIKISAHLEMGLGAYTVLFI 375 (380)
Q Consensus 302 ~~~~~~~~~~~~~~~d~~~~~~a~~~a~~iRA~~e--p~l~~hfge~i~delf~r~~~~v~~~l~~~~~~~~~~~~ 375 (380)
. ..|++++..|.+.+-. +-+..-+|+++. .++.-|-...+...+....+-.++++
T Consensus 314 ~------------------~hy~~TL~~W~~~f~~~~~~~~~~~~~~~~-r~w~~yl~~~~~~F~~~~~~~~q~~~ 370 (383)
T PRK11705 314 G------------------ADYDRTLMAWHENFEAAWPELADNYSERFY-RMWRYYLLSCAGAFRARDIQLWQVVF 370 (383)
T ss_pred h------------------hhHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 2 2344555555444433 223345555543 34666666666666666666666533
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.68 E-value=3.9e-08 Score=77.60 Aligned_cols=95 Identities=25% Similarity=0.319 Sum_probs=62.9
Q ss_pred EeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccC
Q 044727 67 TDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAP 146 (380)
Q Consensus 67 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp 146 (380)
||+|||+|.++..+.+. +..+++..|... ... +..++... . ....+ +-
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~----------~~~-~~~~~~~~-~-~~~~~---~~ 48 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE----------EML-EQARKRLK-N-EGVSF---RQ 48 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H----------HHH-HHHHHHTT-T-STEEE---EE
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH----------HHH-HHHHhccc-c-cCchh---ee
Confidence 79999999999888332 238888888743 111 11221111 1 01124 44
Q ss_pred CCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044727 147 GSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEEL 226 (380)
Q Consensus 147 gSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL 226 (380)
+++..-.||++|+|++++..++||+ + |...+|+.-.+.|
T Consensus 49 ~d~~~l~~~~~sfD~v~~~~~~~~~---~--------------------------------------~~~~~l~e~~rvL 87 (95)
T PF08241_consen 49 GDAEDLPFPDNSFDVVFSNSVLHHL---E--------------------------------------DPEAALREIYRVL 87 (95)
T ss_dssp SBTTSSSS-TT-EEEEEEESHGGGS---S--------------------------------------HHHHHHHHHHHHE
T ss_pred ehHHhCccccccccccccccceeec---c--------------------------------------CHHHHHHHHHHHc
Confidence 8898999999999999999999997 1 2233477779999
Q ss_pred ccCceEEE
Q 044727 227 KTEGRMVL 234 (380)
Q Consensus 227 ~pgG~l~~ 234 (380)
||||++++
T Consensus 88 k~gG~l~~ 95 (95)
T PF08241_consen 88 KPGGRLVI 95 (95)
T ss_dssp EEEEEEEE
T ss_pred CcCeEEeC
Confidence 99999986
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.66 E-value=7.7e-08 Score=83.66 Aligned_cols=138 Identities=21% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
....+|+|+|||+|.++..+ ++. + .+++..|.-...-.. . . ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~--------~-~~~~g~D~~~~~~~~------------~-----~---~~ 63 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR--------G-FEVTGVDISPQMIEK------------R-----N---VV 63 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT--------T-SEEEEEESSHHHHHH------------T-----T---SE
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh--------C-CEEEEEECCHHHHhh------------h-----h---hh
Confidence 45689999999999876655 221 2 488888873210000 0 0 00
Q ss_pred eeeccCCCc--ccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSF--HGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 141 f~~~vpgSF--y~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
+ ..| ....+|++++|+|+|+.+|||+.+.+ .+
T Consensus 64 ~-----~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~-----------------------------------------~~ 97 (161)
T PF13489_consen 64 F-----DNFDAQDPPFPDGSFDLIICNDVLEHLPDPE-----------------------------------------EF 97 (161)
T ss_dssp E-----EEEECHTHHCHSSSEEEEEEESSGGGSSHHH-----------------------------------------HH
T ss_pred h-----hhhhhhhhhccccchhhHhhHHHHhhcccHH-----------------------------------------HH
Confidence 0 111 14446889999999999999976421 23
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeE
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQ 297 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~ 297 (380)
|+.-.+-|+|||+++++.+.+.... ...+.++ ...... +--..+.+.++++.++++.| |+|..
T Consensus 98 l~~l~~~LkpgG~l~~~~~~~~~~~-------~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 98 LKELSRLLKPGGYLVISDPNRDDPS-------PRSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp HHHHHHCEEEEEEEEEEEEBTTSHH-------HHHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhcCCCCEEEEEEcCCcchh-------hhHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 7777999999999999999774211 1111111 111110 01225669999999999999 88853
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.63 E-value=2.5e-07 Score=92.03 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=92.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..++.+.+.. +..+++..|+..+ +-.. .+.... . .+--+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~-mL~~----------A~~k~~-~-~~i~~- 164 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPH-QLAK----------AKQKEP-L-KECKI- 164 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHH-HHHH----------HHHhhh-c-cCCeE-
Confidence 4799999999999887763321 2367888887431 1111 111000 0 01123
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+.|+..+..++++++|+++++.++|++.+.. ..|+.-
T Consensus 165 --i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~-----------------------------------------~~L~e~ 201 (340)
T PLN02490 165 --IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----------------------------------------RGIKEA 201 (340)
T ss_pred --EeccHHhCCCCCCceeEEEEcChhhhCCCHH-----------------------------------------HHHHHH
Confidence 5688877778999999999999999844311 126666
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
.+.|+|||++++.-.... .. .+..-..+ .-..+++.+|+.+.+++.| |+..+++.+.
T Consensus 202 ~rvLkPGG~LvIi~~~~p-~~-----~~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~ 258 (340)
T PLN02490 202 YRVLKIGGKACLIGPVHP-TF-----WLSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIG 258 (340)
T ss_pred HHhcCCCcEEEEEEecCc-ch-----hHHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcC
Confidence 899999999987532211 11 11100010 0112478999999999999 9988877655
Q ss_pred ecC
Q 044727 303 ISW 305 (380)
Q Consensus 303 ~~~ 305 (380)
..|
T Consensus 259 ~~~ 261 (340)
T PLN02490 259 PKW 261 (340)
T ss_pred hhh
Confidence 444
No 26
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.61 E-value=4.9e-07 Score=83.05 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=95.0
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..+..+.... + ...+++..|+.. ++ ........... .+-.|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~----------~~~~~~~~~~~-~~i~~ 92 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EM----------LEVAKKKSELP-LNIEF 92 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HH----------HHHHHHHhccC-CCceE
Confidence 45899999999999888773332 0 126788888732 11 00011000000 01223
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+.+++.+..++++++|+++++..+|+..+. ..+|+.
T Consensus 93 ---~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~-----------------------------------------~~~l~~ 128 (223)
T TIGR01934 93 ---IQADAEALPFEDNSFDAVTIAFGLRNVTDI-----------------------------------------QKALRE 128 (223)
T ss_pred ---EecchhcCCCCCCcEEEEEEeeeeCCcccH-----------------------------------------HHHHHH
Confidence 337777777888999999999999885431 123777
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHH---ccCccccccccccc----CcccCCHHHHHHHHHhcCcee
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVY---EGLIEVSKLESFHF----PMYNPCVEEVRQVIEREGSFN 294 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~---eG~i~~e~~d~f~~----P~Y~ps~eE~~~~ie~~GsF~ 294 (380)
..+.|+|||++++...-..... . +..+.+.+..... .+.... ..+.+.. ...+++.+|++..+++.| |+
T Consensus 129 ~~~~L~~gG~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~ 204 (223)
T TIGR01934 129 MYRVLKPGGRLVILEFSKPANA-L-LKKFYKFYLKNVLPSIGGLISK-NAEAYTYLPESIRAFPSQEELAAMLKEAG-FE 204 (223)
T ss_pred HHHHcCCCcEEEEEEecCCCch-h-hHHHHHHHHHHhhhhhhhhhcC-CchhhHHHHHHHHhCCCHHHHHHHHHHcC-Cc
Confidence 7899999999998655332111 1 1122122211100 011111 1111110 122578999999999999 99
Q ss_pred EeEEEEEe
Q 044727 295 IHQLETSH 302 (380)
Q Consensus 295 I~~~e~~~ 302 (380)
+...+.+.
T Consensus 205 ~~~~~~~~ 212 (223)
T TIGR01934 205 EVRYRSLT 212 (223)
T ss_pred cceeeeee
Confidence 88777654
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.61 E-value=3.3e-07 Score=85.09 Aligned_cols=173 Identities=19% Similarity=0.154 Sum_probs=97.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..+..+.... ++..+++..|+..+ .-...+.. .. ..+ ...+..|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-~~~~a~~~------~~-~~~-~~~~~~~- 107 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-MLAVGREK------LR-DLG-LSGNVEF- 107 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-HHHHHHHh------hc-ccc-cccCeEE-
Confidence 4799999999999888773322 12578899998431 10000000 00 000 0001233
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+-+++....++++++|++++++.+|++++.+. +|+..
T Consensus 108 --~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~-----------------------------------------~l~~~ 144 (239)
T PRK00216 108 --VQGDAEALPFPDNSFDAVTIAFGLRNVPDIDK-----------------------------------------ALREM 144 (239)
T ss_pred --EecccccCCCCCCCccEEEEecccccCCCHHH-----------------------------------------HHHHH
Confidence 33677777778899999999999998654322 26666
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHc--c-Cccc--cccccc-ccCcccCCHHHHHHHHHhcCceeEe
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYE--G-LIEV--SKLESF-HFPMYNPCVEEVRQVIEREGSFNIH 296 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~e--G-~i~~--e~~d~f-~~P~Y~ps~eE~~~~ie~~GsF~I~ 296 (380)
.+.|+|||.+++......... . +..+.+.+...... + .+.. +..+.+ +.--.+++.+|+..++++.| |++.
T Consensus 145 ~~~L~~gG~li~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~ 221 (239)
T PRK00216 145 YRVLKPGGRLVILEFSKPTNP-P-LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERV 221 (239)
T ss_pred HHhccCCcEEEEEEecCCCch-H-HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Ccee
Confidence 889999999988766543221 1 11111111110000 0 0001 000000 00123579999999999999 9988
Q ss_pred EEEEEeecC
Q 044727 297 QLETSHISW 305 (380)
Q Consensus 297 ~~e~~~~~~ 305 (380)
+...+...|
T Consensus 222 ~~~~~~~~~ 230 (239)
T PRK00216 222 RYRNLTGGI 230 (239)
T ss_pred eeeeeecCc
Confidence 877665443
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.55 E-value=2.6e-07 Score=85.79 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeec
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAA 144 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~ 144 (380)
+|+|+|||+|..+..+.+. + |..+++..|+..+-. ...+ ... ...|.. ....|
T Consensus 2 ~vLDiGcG~G~~~~~la~~--------~-------~~~~v~gid~s~~~~-~~a~------~~~-~~~gl~-~~i~~--- 54 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER--------H-------PHLQLHGYTISPEQA-EVGR------ERI-RALGLQ-GRIRI--- 54 (224)
T ss_pred eEEEECCCCCHHHHHHHHH--------C-------CCCEEEEEECCHHHH-HHHH------HHH-HhcCCC-cceEE---
Confidence 6999999999987766322 1 346788888732110 0000 000 011100 01122
Q ss_pred cCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSE 224 (380)
Q Consensus 145 vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 224 (380)
+.+++...++| +++|+++|..++|++.+. ..+|+.-++
T Consensus 55 ~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~-----------------------------------------~~~l~~~~~ 92 (224)
T smart00828 55 FYRDSAKDPFP-DTYDLVFGFEVIHHIKDK-----------------------------------------MDLFSNISR 92 (224)
T ss_pred EecccccCCCC-CCCCEeehHHHHHhCCCH-----------------------------------------HHHHHHHHH
Confidence 33565444444 589999999999996331 234667789
Q ss_pred HhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEEee
Q 044727 225 ELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHI 303 (380)
Q Consensus 225 eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~ 303 (380)
.|+|||++++..+...... .+..+ ..+.|.++.+|+...+++.| |++.+.+.+..
T Consensus 93 ~LkpgG~l~i~~~~~~~~~------------------~~~~~-----~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~~ 147 (224)
T smart00828 93 HLKDGGHLVLADFIANLLS------------------AIEHE-----ETTSYLVTREEWAELLARNN-LRVVEGVDASL 147 (224)
T ss_pred HcCCCCEEEEEEcccccCc------------------ccccc-----ccccccCCHHHHHHHHHHCC-CeEEEeEECcH
Confidence 9999999998865332100 00111 23456899999999999999 99988776543
No 29
>PRK06202 hypothetical protein; Provisional
Probab=98.48 E-value=5e-06 Score=77.98 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
.++.+|+|+|||+|.++..+.... ++. .+..+++..|+.. .+. ...+.... ..+--
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~----------~~l-~~a~~~~~--~~~~~ 114 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP----------RAV-AFARANPR--RPGVT 114 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH----------HHH-HHHHhccc--cCCCe
Confidence 346899999999999888764332 111 1447899999843 111 11111100 00112
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
+..+....+ .++++++|+++|+.+|||+.+. ++..+|+
T Consensus 115 ~~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d~---------------------------------------~~~~~l~ 152 (232)
T PRK06202 115 FRQAVSDEL---VAEGERFDVVTSNHFLHHLDDA---------------------------------------EVVRLLA 152 (232)
T ss_pred EEEEecccc---cccCCCccEEEECCeeecCChH---------------------------------------HHHHHHH
Confidence 222222222 2378899999999999997541 1112344
Q ss_pred HHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHcc-CcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 221 FRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEG-LIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG-~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
.-++.++ |.+++.-+.+.... +.... ........| .+..+ ....-.-+++.+|+.+.+++ | |++.+.-
T Consensus 153 ~~~r~~~--~~~~i~dl~~~~~~---~~~~~-~~~~~~~~~~~~~~d---~~~s~~~~~~~~el~~ll~~-G-f~~~~~~ 221 (232)
T PRK06202 153 DSAALAR--RLVLHNDLIRSRLA---YALFW-AGTRLLSRSSFVHTD---GLLSVRRSYTPAELAALAPQ-G-WRVERQW 221 (232)
T ss_pred HHHHhcC--eeEEEeccccCHHH---HHHHH-HHHHHhccCceeecc---chHHHHhhcCHHHHHHHhhC-C-CeEEecc
Confidence 4455555 56666666554211 11111 111111112 22222 22223457899999999998 8 9988876
Q ss_pred EEeecC
Q 044727 300 TSHISW 305 (380)
Q Consensus 300 ~~~~~~ 305 (380)
.|...|
T Consensus 222 ~~~~~~ 227 (232)
T PRK06202 222 PFRYLL 227 (232)
T ss_pred ceeeEE
Confidence 665444
No 30
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=9.5e-07 Score=82.40 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=99.7
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
-.++|+|||-|+.+-.+...=| -+++..|... .+.++.... . .+.+-+.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~----------~M~~s~~~~----q-dp~i~~~ 122 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSY----------DMIKSCRDA----Q-DPSIETS 122 (325)
T ss_pred cceeecccchhhhhHHHHhcch----------------hheeeeecch----------HHHHHhhcc----C-CCceEEE
Confidence 4789999999998877743322 3445556532 222211110 0 0221111
Q ss_pred ccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 144 ~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
-.-|+=...-|-.+|+|+++||.++||.+++|.. +....
T Consensus 123 ~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~-----------------------------------------m~~ck 161 (325)
T KOG2940|consen 123 YFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGS-----------------------------------------MIQCK 161 (325)
T ss_pred EEecchhcccccccchhhhhhhhhhhhhccCchH-----------------------------------------HHHHH
Confidence 1224544555899999999999999999999986 44457
Q ss_pred HHhccCceEEEEeccCCCcchhHHHH-HHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 224 EELKTEGRMVLNFIGNDKYHTGVFEL-MGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 224 ~eL~pgG~l~~~~~g~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
..|||.|.++.+++|.+ .++++ .+--|.+|-.+|=|++- ..|+. ...++..++.+.| |....+.
T Consensus 162 ~~lKPDg~Fiasmlggd----TLyELR~slqLAelER~GGiSph-----iSPf~--qvrDiG~LL~rAG-F~m~tvD 226 (325)
T KOG2940|consen 162 LALKPDGLFIASMLGGD----TLYELRCSLQLAELEREGGISPH-----ISPFT--QVRDIGNLLTRAG-FSMLTVD 226 (325)
T ss_pred HhcCCCccchhHHhccc----cHHHHHHHhhHHHHHhccCCCCC-----cChhh--hhhhhhhHHhhcC-cccceec
Confidence 88999999999999886 22321 23346788888887773 33432 4678889999999 8765544
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.41 E-value=3.6e-07 Score=73.89 Aligned_cols=79 Identities=24% Similarity=0.190 Sum_probs=36.3
Q ss_pred EeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccC
Q 044727 67 TDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAP 146 (380)
Q Consensus 67 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp 146 (380)
+|+|||+|..+..++... |..+++..|.... .+....+.+..... . ....+....
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~-------~l~~a~~~~~~~~~-~--~~~~~~~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPS-------MLERARERLAELGN-D--NFERLRFDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSS-------TTSTTCCCHHHCT------EEEEE--S
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHH-------HHHHHHHHhhhcCC-c--ceeEEEeec
Confidence 699999999999985553 5699999998641 11000011111000 0 112223233
Q ss_pred CCcccCCCCCCccceEEcccccccc
Q 044727 147 GSFHGRLFPPCFLNLVYSSFCLHWL 171 (380)
Q Consensus 147 gSFy~~l~p~~svdl~~Ss~alhWl 171 (380)
.+.... .+.+++|+++++.+|||+
T Consensus 56 ~~~~~~-~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 56 LDLFDY-DPPESFDLVVASNVLHHL 79 (99)
T ss_dssp SS---C-CC----SEEEEE-TTS--
T ss_pred CChhhc-ccccccceehhhhhHhhh
Confidence 333222 233799999999999998
No 32
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.40 E-value=5.4e-06 Score=81.06 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=89.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..++.+.+. + |..+++.-|+|. . +....... ...+.. .+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~--------~-------p~~~~~~~D~~~--~------~~~a~~~~-~~~gl~--~r-- 200 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH--------F-------PELDSTILNLPG--A------IDLVNENA-AEKGVA--DR-- 200 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH--------C-------CCCEEEEEecHH--H------HHHHHHHH-HhCCcc--ce--
Confidence 4579999999999877766333 2 678888889863 0 11000001 111101 11
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+..++|+|+...+|+ .|+++.+..+|-.. +. +-..+|+.
T Consensus 201 v~~~~~d~~~~~~~~--~D~v~~~~~lh~~~---~~------------------------------------~~~~il~~ 239 (306)
T TIGR02716 201 MRGIAVDIYKESYPE--ADAVLFCRILYSAN---EQ------------------------------------LSTIMCKK 239 (306)
T ss_pred EEEEecCccCCCCCC--CCEEEeEhhhhcCC---hH------------------------------------HHHHHHHH
Confidence 233779998766775 49998888887321 11 11233777
Q ss_pred HHHHhccCceEEEEeccCC-CcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeE
Q 044727 222 RSEELKTEGRMVLNFIGND-KYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQ 297 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~-~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~ 297 (380)
-++.|+|||++++.=+-.. +.. ..+..+...+..+ |... .+.-+++.+|+.+++++.| |+..+
T Consensus 240 ~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~---~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 240 AFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGA---GMPF--------SVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred HHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHc---cccc--------ccccCCCHHHHHHHHHHcC-CCeeE
Confidence 7899999999988743222 111 2222332222211 2110 1123556899999999999 87544
No 33
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=81.09 Aligned_cols=140 Identities=23% Similarity=0.264 Sum_probs=94.0
Q ss_pred chHHHhcHH---HHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceE
Q 044727 28 NSYANNSAP---SREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHA 104 (380)
Q Consensus 28 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v 104 (380)
.-|++||.+ |....++++.+|.- ..+++--|+|+|||||--+-.+ . .+.-++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL--------~---------~~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVL--------S---------DSGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchhee--------c---------cCCceE
Confidence 568899875 66666666655543 1235789999999999765544 1 134778
Q ss_pred EecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCC
Q 044727 105 FLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGI 184 (380)
Q Consensus 105 ~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~ 184 (380)
+.-|..- +++..-...+. . ...-.+-. | .+-.|+++++|=++|-+|+|||-...+...
T Consensus 76 iGvDiSp----------sML~~a~~~e~--e--gdlil~DM-G--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~----- 133 (270)
T KOG1541|consen 76 IGVDISP----------SMLEQAVEREL--E--GDLILCDM-G--EGLPFRPGTFDGVISISAVQWLCNADKSLH----- 133 (270)
T ss_pred EeecCCH----------HHHHHHHHhhh--h--cCeeeeec-C--CCCCCCCCccceEEEeeeeeeecccCcccc-----
Confidence 8888753 44433221111 0 11221212 2 477889999999999999999877644322
Q ss_pred CCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccC
Q 044727 185 PLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 185 ~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
.| ++.+..|+..-...|++|++.|+.+.-.
T Consensus 134 ---------------~P----------~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 134 ---------------VP----------KKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ---------------Ch----------HHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 12 3678899999999999999999999743
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.37 E-value=2.4e-06 Score=78.45 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=82.0
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+.+|+|+|||+|.+++.+.+ + ..+|+.-|+.. +.-...+ ......+ ..+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~-~~i~~a~-------~~~~~~~---~~~--v 80 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNP-MSIANLE-------RIKAAEN---LDN--L 80 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCH-HHHHHHH-------HHHHHcC---CCc--c
Confidence 47999999999999988732 1 25788888843 0000000 0111111 111 2
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
..+.+++....+ +.++|+++|+.++||++. . |...+++.-
T Consensus 81 ~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~---~------------------------------------~~~~~l~~i 120 (197)
T PRK11207 81 HTAVVDLNNLTF-DGEYDFILSTVVLMFLEA---K------------------------------------TIPGLIANM 120 (197)
T ss_pred eEEecChhhCCc-CCCcCEEEEecchhhCCH---H------------------------------------HHHHHHHHH
Confidence 223456644334 567999999999999642 1 233457777
Q ss_pred HHHhccCceEEE-EeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 223 SEELKTEGRMVL-NFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 223 a~eL~pgG~l~~-~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
++.|+|||.+++ .++...... .. .-|-+..+.+|+...++ | |++.+.+
T Consensus 121 ~~~LkpgG~~~~~~~~~~~~~~--------------------~~------~~~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 121 QRCTKPGGYNLIVAAMDTADYP--------------------CT------VGFPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred HHHcCCCcEEEEEEEecCCCCC--------------------CC------CCCCCccCHHHHHHHhC--C-CeEEEee
Confidence 999999999655 443221100 00 11336679999999887 6 8876653
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.29 E-value=0.00011 Score=71.13 Aligned_cols=74 Identities=24% Similarity=0.444 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCc-ccCCHHHHHHHHHhcCc
Q 044727 214 DFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPM-YNPCVEEVRQVIEREGS 292 (380)
Q Consensus 214 D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-Y~ps~eE~~~~ie~~Gs 292 (380)
++..|++.-.+-|+|||++++..++..... ... +.-.+.+-+..+.+|- +.|+.+|+...++..|
T Consensus 144 ~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---~~~----------~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~- 209 (273)
T PF02353_consen 144 NYPAFFRKISRLLKPGGRLVLQTITHRDPP---YHA----------ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG- 209 (273)
T ss_dssp GHHHHHHHHHHHSETTEEEEEEEEEE--HH---HHH----------CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccccc---chh----------hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-
Confidence 566789999999999999999988764211 000 0000000111223343 6689999999999888
Q ss_pred eeEeEEEEE
Q 044727 293 FNIHQLETS 301 (380)
Q Consensus 293 F~I~~~e~~ 301 (380)
|+|...+.+
T Consensus 210 l~v~~~~~~ 218 (273)
T PF02353_consen 210 LEVEDVENL 218 (273)
T ss_dssp -EEEEEEE-
T ss_pred EEEEEEEEc
Confidence 998766644
No 36
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.29 E-value=1.6e-06 Score=79.93 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=87.6
Q ss_pred HHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchh
Q 044727 36 PSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFN 115 (380)
Q Consensus 36 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn 115 (380)
+|+.+.....|++-........-......+|+|+|||+|..+..+.... |..+|+..|.-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~---- 74 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE---- 74 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech----
Confidence 4555555566665322221111011245799999999999998873321 457888888743
Q ss_pred hhhccCcchHHHhhhhcCCCCCCc-ceeeccCCCc-c--cCCCCCCccceEEcccccccccCCCccccccCCCCCCCCcc
Q 044727 116 TVSKSLPSFYERLKTERGHDDFGS-CFIAAAPGSF-H--GRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRD 191 (380)
Q Consensus 116 ~lf~~l~~~~~~~~~~~~~~~~~~-~f~~~vpgSF-y--~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~ 191 (380)
.+ ...++.........+ .| +-+++ . .+.++++++|.+++.++.+|....... ..
T Consensus 75 ------~~-i~~a~~~~~~~~~~~v~~---~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~------------~~ 132 (202)
T PRK00121 75 ------PG-VGKALKKIEEEGLTNLRL---LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHK------------RR 132 (202)
T ss_pred ------HH-HHHHHHHHHHcCCCCEEE---EecCHHHHHHHHcCccccceEEEECCCCCCCccccc------------cc
Confidence 11 111111000011122 23 33555 2 344789999999998887775431100 00
Q ss_pred EEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccC
Q 044727 192 VCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGL 262 (380)
Q Consensus 192 i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~ 262 (380)
.+...||+.-++.|+|||.+++.+... +.+...+..|...|+
T Consensus 133 ---------------------~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 133 ---------------------LVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGG 174 (202)
T ss_pred ---------------------cCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCcc
Confidence 022345777899999999999987433 233344555556665
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.29 E-value=8.1e-06 Score=78.33 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=88.5
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGS 139 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~ 139 (380)
..+|+|+|||+|..++.+...+ .+..+|+..|... ......+. ..+.. +-
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~-----------~~l~~A~~~~~~~g~~--~v 130 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTP-----------EMLAKARANARKAGYT--NV 130 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCH-----------HHHHHHHHHHHHcCCC--CE
Confidence 4799999999998776552221 1346888888732 11111111 11101 11
Q ss_pred ceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 140 CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 140 ~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
.| +.|++....+|++++|+++|..++||..+.+. .|
T Consensus 131 ~~---~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~-----------------------------------------~l 166 (272)
T PRK11873 131 EF---RLGEIEALPVADNSVDVIISNCVINLSPDKER-----------------------------------------VF 166 (272)
T ss_pred EE---EEcchhhCCCCCCceeEEEEcCcccCCCCHHH-----------------------------------------HH
Confidence 23 44777766788999999999999998433211 15
Q ss_pred HHHHHHhccCceEEEEeccCC-CcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 220 KFRSEELKTEGRMVLNFIGND-KYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~-~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
+.-.+.|+|||++++.-+... +.. +.+...+. +. .|. .....+.+|+..+++..| |...++
T Consensus 167 ~~~~r~LkpGG~l~i~~~~~~~~~~----~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i 228 (272)
T PRK11873 167 KEAFRVLKPGGRFAISDVVLRGELP----EEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITI 228 (272)
T ss_pred HHHHHHcCCCcEEEEEEeeccCCCC----HHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEE
Confidence 555888999999999755322 211 11111111 10 011 112357889999999999 887665
Q ss_pred EE
Q 044727 299 ET 300 (380)
Q Consensus 299 e~ 300 (380)
..
T Consensus 229 ~~ 230 (272)
T PRK11873 229 QP 230 (272)
T ss_pred Ee
Confidence 43
No 38
>PRK06922 hypothetical protein; Provisional
Probab=98.28 E-value=1.7e-06 Score=91.94 Aligned_cols=116 Identities=18% Similarity=0.104 Sum_probs=72.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..+..+... + |..+++..|+.. .+. +.++........+-.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~--------~-------P~~kVtGIDIS~----------~ML-e~Ararl~~~g~~ie~- 471 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE--------T-------EDKRIYGIDISE----------NVI-DTLKKKKQNEGRSWNV- 471 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh--------C-------CCCEEEEEECCH----------HHH-HHHHHHhhhcCCCeEE-
Confidence 579999999999877655222 1 568999999964 111 1111110000001123
Q ss_pred eccCCCcccC--CCCCCccceEEcccccccc-cCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGR--LFPPCFLNLVYSSFCLHWL-SRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 143 ~~vpgSFy~~--l~p~~svdl~~Ss~alhWl-s~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
+.|+...- .||++++|++++++++||+ +.+|..-. .++ .+|...+|
T Consensus 472 --I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~------~f~-----------------------~edl~kiL 520 (677)
T PRK06922 472 --IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK------KFN-----------------------HEVIKKGL 520 (677)
T ss_pred --EEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccc------ccc-----------------------HHHHHHHH
Confidence 33555332 3789999999999999975 44542200 011 14677789
Q ss_pred HHHHHHhccCceEEEEe
Q 044727 220 KFRSEELKTEGRMVLNF 236 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~ 236 (380)
+.-.+.|||||++++.=
T Consensus 521 reI~RVLKPGGrLII~D 537 (677)
T PRK06922 521 QSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHHHHcCCCcEEEEEe
Confidence 99999999999999963
No 39
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.26 E-value=3.3e-06 Score=80.00 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=102.7
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhh--cCCCCCCc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTE--RGHDDFGS 139 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~--~~~~~~~~ 139 (380)
+.++++|++||||-.++.++..+-++ .+ . -+-+|+..|.-. +++....+++ .+ -....
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~-------~~-~-~~~~V~v~Dinp----------~mL~vgkqRa~~~~-l~~~~ 159 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQ-------FG-D-RESKVTVLDINP----------HMLAVGKQRAKKRP-LKASS 159 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccc-------cC-C-CCceEEEEeCCH----------HHHHHHHHHHhhcC-CCcCC
Confidence 35999999999999999997766322 11 1 247777777743 3332211111 11 01111
Q ss_pred ceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 140 CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 140 ~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
++.- +.|+.....||++++|...+++.+--+.+++..+
T Consensus 160 ~~~w-~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l----------------------------------------- 197 (296)
T KOG1540|consen 160 RVEW-VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKAL----------------------------------------- 197 (296)
T ss_pred ceEE-EeCCcccCCCCCCcceeEEEecceecCCCHHHHH-----------------------------------------
Confidence 1222 6799999999999999999999998877765542
Q ss_pred HHHHHHhccCceEEEEeccCCC--cch-----hHHH---HHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHh
Q 044727 220 KFRSEELKTEGRMVLNFIGNDK--YHT-----GVFE---LMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIER 289 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~~--~~~-----~~~~---~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~ 289 (380)
+--.|.|||||++.+.-|..-+ .-. ..++ .+.+.+....+.+..=-|-+ --+|+.||+...+|+
T Consensus 198 ~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI------~rfp~qe~f~~mied 271 (296)
T KOG1540|consen 198 REAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI------RRFPPQEEFASMIED 271 (296)
T ss_pred HHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh------hcCCCHHHHHHHHHH
Confidence 2237889999999988886642 111 1112 22222222222221111111 235889999999999
Q ss_pred cCceeEeE
Q 044727 290 EGSFNIHQ 297 (380)
Q Consensus 290 ~GsF~I~~ 297 (380)
+| |....
T Consensus 272 aG-F~~~~ 278 (296)
T KOG1540|consen 272 AG-FSSVN 278 (296)
T ss_pred cC-Ccccc
Confidence 99 87664
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.22 E-value=6.4e-05 Score=69.79 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.7
Q ss_pred ccCcccCCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 272 HFPMYNPCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 272 ~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
..++++++++|+..+++..| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998887654
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.21 E-value=8.4e-06 Score=66.89 Aligned_cols=105 Identities=24% Similarity=0.243 Sum_probs=65.1
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhh---cCCCCCCc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTE---RGHDDFGS 139 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~---~~~~~~~~ 139 (380)
.-+|+|+|||+|..++.+.+.- |..+|+.-|.-. ...+..+.. .+ ...+-
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------~~~~v~gvD~s~-----------~~~~~a~~~~~~~~-~~~~i 54 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------PGARVVGVDISP-----------EMLEIARERAAEEG-LSDRI 54 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------TTSEEEEEESSH-----------HHHHHHHHHHHHTT-TTTTE
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------CCCEEEEEeCCH-----------HHHHHHHHHHHhcC-CCCCe
Confidence 3689999999999999885421 568888888732 111111111 11 11122
Q ss_pred ceeeccCCCc-ccCCCCCCccceEEccc-ccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 140 CFIAAAPGSF-HGRLFPPCFLNLVYSSF-CLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 140 ~f~~~vpgSF-y~~l~p~~svdl~~Ss~-alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
.| +.+++ +..-+ ...+|++++.. ++|++-.. .+...
T Consensus 55 ~~---~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~--------------------------------------~~~~~ 92 (112)
T PF12847_consen 55 TF---VQGDAEFDPDF-LEPFDLVICSGFTLHFLLPL--------------------------------------DERRR 92 (112)
T ss_dssp EE---EESCCHGGTTT-SSCEEEEEECSGSGGGCCHH--------------------------------------HHHHH
T ss_pred EE---EECccccCccc-CCCCCEEEECCCccccccch--------------------------------------hHHHH
Confidence 34 33666 22222 33499999999 66753221 13445
Q ss_pred HHHHHHHHhccCceEEEEe
Q 044727 218 FLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~ 236 (380)
+|+.-.+.|+|||++++..
T Consensus 93 ~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 93 VLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEE
Confidence 5888899999999999875
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.17 E-value=3.5e-06 Score=73.75 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=68.5
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~ 138 (380)
+..+|+|+|||+|..+..+...+ + |..+++..|+-. ...+..+. ..+.+ .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~-------~-------~~~~i~gvD~s~-----------~~i~~a~~~~~~~~~~--n 55 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL-------N-------PGAKIIGVDISE-----------EMIEYAKKRAKELGLD--N 55 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS-------T-------TTSEEEEEESSH-----------HHHHHHHHHHHHTTST--T
T ss_pred CCCEEEEecCcCcHHHHHHHHhc-------C-------CCCEEEEEECcH-----------HHHHHhhccccccccc--c
Confidence 46899999999999998884311 1 458899999843 11111211 11201 2
Q ss_pred cceeeccCCCcccCC--CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHH
Q 044727 139 SCFIAAAPGSFHGRL--FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFT 216 (380)
Q Consensus 139 ~~f~~~vpgSFy~~l--~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~ 216 (380)
-.|.. +++.+-- ++ +.+|++++..++||+.+..
T Consensus 56 i~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~----------------------------------------- 90 (152)
T PF13847_consen 56 IEFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPDPE----------------------------------------- 90 (152)
T ss_dssp EEEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSHHH-----------------------------------------
T ss_pred cceEE---eehhccccccC-CCeeEEEEcCchhhccCHH-----------------------------------------
Confidence 24433 6775511 34 8999999999998855422
Q ss_pred HHHHHHHHHhccCceEEEEecc
Q 044727 217 SFLKFRSEELKTEGRMVLNFIG 238 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~~g 238 (380)
.+|+.-.+-|++||.+++....
T Consensus 91 ~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 91 KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEECC
Confidence 2266668999999999999876
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.13 E-value=1.2e-05 Score=83.34 Aligned_cols=135 Identities=12% Similarity=0.072 Sum_probs=81.2
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|.+|..+... + .+|+..|.-. .+. .......+ ....-.|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--------~---------~~v~giD~s~----------~~l-~~a~~~~~-~~~~i~~~ 88 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--------A---------GQVIALDFIE----------SVI-KKNESING-HYKNVKFM 88 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--------C---------CEEEEEeCCH----------HHH-HHHHHHhc-cCCceEEE
Confidence 358999999999999887321 1 3567777532 111 11111111 00012343
Q ss_pred eccCCCcc--cCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFH--GRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 143 ~~vpgSFy--~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
. +++. ...+|++++|++++..++||+++. ++..+|+
T Consensus 89 ~---~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~---------------------------------------~~~~~l~ 126 (475)
T PLN02336 89 C---ADVTSPDLNISDGSVDLIFSNWLLMYLSDK---------------------------------------EVENLAE 126 (475)
T ss_pred E---ecccccccCCCCCCEEEEehhhhHHhCCHH---------------------------------------HHHHHHH
Confidence 3 4543 235788999999999999997431 2344588
Q ss_pred HHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcC
Q 044727 221 FRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREG 291 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~G 291 (380)
..++.|+|||++++.=..-.+. | .+....-|..+++..++..++.++|
T Consensus 127 ~~~r~Lk~gG~l~~~d~~~~~~------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 127 RMVKWLKVGGYIFFRESCFHQS------------------G-----DSKRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred HHHHhcCCCeEEEEEeccCCCC------------------C-----cccccCCCCeecChHHHHHHHHHhe
Confidence 8899999999998752110000 0 0111233555577889999999887
No 44
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.13 E-value=3.5e-05 Score=70.30 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=23.9
Q ss_pred cccCCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 275 MYNPCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 275 ~Y~ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
..+++.+|+.+++++.| |++...+.+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45789999999999999 9999988773
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.13 E-value=4.4e-06 Score=76.59 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=80.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+.+|+|+|||+|.+++.+.. + ..+|+.-|+.. +.-...+. .. ...+ .. +
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~-~~l~~a~~------~~-~~~~---~~---v 79 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNP-ASIASVLD------MK-AREN---LP---L 79 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHH------HH-HHhC---CC---c
Confidence 57999999999999998832 1 25788888843 11111110 01 1111 11 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
....+++-... +++++|+++|+.++||++. . ++..+++.-
T Consensus 80 ~~~~~d~~~~~-~~~~fD~I~~~~~~~~~~~---~------------------------------------~~~~~l~~~ 119 (195)
T TIGR00477 80 RTDAYDINAAA-LNEDYDFIFSTVVFMFLQA---G------------------------------------RVPEIIANM 119 (195)
T ss_pred eeEeccchhcc-ccCCCCEEEEecccccCCH---H------------------------------------HHHHHHHHH
Confidence 11223332222 2468999999999999632 1 233457778
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
++.|+|||++++...-..+.. ..| ..|-|-.+++|+++.++ + |++...+
T Consensus 120 ~~~LkpgG~lli~~~~~~~~~---------------~~~----------~~~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 120 QAHTRPGGYNLIVAAMDTADY---------------PCH----------MPFSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred HHHhCCCcEEEEEEecccCCC---------------CCC----------CCcCccCCHHHHHHHhC--C-CeEEEee
Confidence 999999999665442111000 001 12246789999999886 3 7777665
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.10 E-value=2e-05 Score=75.87 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..+..+...+ . .....+++..|+.. .+. ....+... +..|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~----~--------~~~~~~v~giD~s~----------~~l-~~A~~~~~----~~~~ 137 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL----P--------EITTMQLFGLDISK----------VAI-KYAAKRYP----QVTF 137 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc----c--------cccCCeEEEECCCH----------HHH-HHHHHhCC----CCeE
Confidence 34789999999999888774432 0 00125789999843 111 11111111 1234
Q ss_pred eeccCCCcccCCCCCCccceEEcccc
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFC 167 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~a 167 (380)
.. ++..+..|+++++|+++|.++
T Consensus 138 ~~---~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 138 CV---ASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred EE---eecccCCCcCCceeEEEEecC
Confidence 33 566677789999999998653
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.10 E-value=9.9e-05 Score=68.51 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.1
Q ss_pred ccCcccCCHHHHHHHHHhcCceeEeEEEEEeec
Q 044727 272 HFPMYNPCVEEVRQVIEREGSFNIHQLETSHIS 304 (380)
Q Consensus 272 ~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~~~ 304 (380)
..+.+..+.+|+...++..| |++...+.+...
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 218 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERISSG 218 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeeccch
Confidence 44677889999999999999 999888766544
No 48
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.07 E-value=1.4e-05 Score=74.72 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEE
Q 044727 155 PPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVL 234 (380)
Q Consensus 155 p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~ 234 (380)
+++.+|+++++..+++..+. ..+|+...+-|+|||++++
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~-----------------------------------------~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDP-----------------------------------------ASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred cCCCccEEEEhhHhhccCCH-----------------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 56889999998888874321 1237777889999999999
Q ss_pred EeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 235 NFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 235 ~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
+..++.... ....... .+.+..+. ... ......+.+++|+..++++.| |++.....
T Consensus 150 ~~~~~~~~~-~~~~~~~---~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 150 STLNRNLKS-YLLAIVG---AEYVLRML-PKG----THDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred EecCCChHH-HHHHHhh---HHHHhhhc-Ccc----cCchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 887653211 1111110 11112111 110 111234678999999999999 99887753
No 49
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.05 E-value=1.9e-05 Score=77.31 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=72.0
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..|..+++.+. ...+++.-|+.. .++.....+-. ...+.+-
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~--------------~~~~~~~iDiS~----------~mL~~a~~~l~--~~~p~~~ 116 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALR--------------QPARYVPIDISA----------DALKESAAALA--ADYPQLE 116 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhc--------------cCCeEEEEECCH----------HHHHHHHHHHH--hhCCCce
Confidence 347899999999999998866541 137889999864 22221111100 0112333
Q ss_pred eeccCCCcccCC-CCCC----ccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRL-FPPC----FLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFT 216 (380)
Q Consensus 142 ~~~vpgSFy~~l-~p~~----svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~ 216 (380)
+.++-|+|.+.+ +|.. ...++++.+++++++. .|..
T Consensus 117 v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~---------------------------------------~e~~ 157 (301)
T TIGR03438 117 VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP---------------------------------------EEAV 157 (301)
T ss_pred EEEEEEcccchhhhhcccccCCeEEEEecccccCCCH---------------------------------------HHHH
Confidence 445668887532 3433 3456666677887531 1344
Q ss_pred HHHHHHHHHhccCceEEEEeccCC
Q 044727 217 SFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
.||+.-++.|+|||+|++.+-...
T Consensus 158 ~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 158 AFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCC
Confidence 678888999999999999876554
No 50
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.04 E-value=3e-05 Score=71.73 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=85.6
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCC-Ccc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDF-GSC 140 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~-~~~ 140 (380)
+..+|+|+|||+|..+..+.+. ...++..|+... .....+........ ...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~-----------~~~~a~~~~~~~~~~~~~ 96 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEE-----------NIEVAKLHAKKDPLLKIE 96 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHH-----------HHHHHHHHHHHcCCCceE
Confidence 4689999999999877655211 134777887431 00001100000000 112
Q ss_pred eeeccCCCcccCCCC-CCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFP-PCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 141 f~~~vpgSFy~~l~p-~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
| +-+++-+.+.+ ++++|++++..++|+..+. ..+|
T Consensus 97 ~---~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~-----------------------------------------~~~l 132 (224)
T TIGR01983 97 Y---RCTSVEDLAEKGAKSFDVVTCMEVLEHVPDP-----------------------------------------QAFI 132 (224)
T ss_pred E---EeCCHHHhhcCCCCCccEEEehhHHHhCCCH-----------------------------------------HHHH
Confidence 2 22444333332 4789999999888885321 1236
Q ss_pred HHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 220 KFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
+.-.+-|+|||.+++....+.... .....+. .++.. +..... -.....+.+++++.++++..| |+|..+.
T Consensus 133 ~~~~~~L~~gG~l~i~~~~~~~~~-~~~~~~~---~~~~~-~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~ 202 (224)
T TIGR01983 133 RACAQLLKPGGILFFSTINRTPKS-YLLAIVG---AEYIL-RIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVK 202 (224)
T ss_pred HHHHHhcCCCcEEEEEecCCCchH-HHHHHHh---hhhhh-hcCCCC----cCChhhcCCHHHHHHHHHHcC-Ceeeeee
Confidence 777889999999998876543221 1111110 11111 111111 011123458899999999999 9998776
Q ss_pred EE
Q 044727 300 TS 301 (380)
Q Consensus 300 ~~ 301 (380)
.+
T Consensus 203 ~~ 204 (224)
T TIGR01983 203 GL 204 (224)
T ss_pred eE
Confidence 43
No 51
>PRK05785 hypothetical protein; Provisional
Probab=98.04 E-value=1.3e-05 Score=75.32 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=51.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+.+|+|+|||||.++..+.... ..+|+.-|+.. .++.. .+. . .-+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S~----------~Ml~~-a~~----~---~~~- 96 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYAE----------NMLKM-NLV----A---DDK- 96 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCCH----------HHHHH-HHh----c---cce-
Confidence 5799999999998887662221 25788888743 22211 111 0 123
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCC
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRM 174 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~ 174 (380)
+-+++....||++|+|+++|+++|||+.+.
T Consensus 97 --~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 97 --VVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred --EEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 347887888999999999999999996554
No 52
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.00 E-value=5.8e-05 Score=70.17 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=70.8
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..|..+++.. .+.-+|+.-|+- +.+ .++ +-.+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~--~~~----~~~---------------~v~~- 95 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDIL--PMD----PIV---------------GVDF- 95 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEecc--ccc----CCC---------------CcEE-
Confidence 4689999999999887764332 134688888883 211 011 1123
Q ss_pred eccCCCcccC--------CCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGR--------LFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEID 214 (380)
Q Consensus 143 ~~vpgSFy~~--------l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D 214 (380)
+-|++... .+++.++|+++|..+.||... |. .+ ... + ...
T Consensus 96 --i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d--------------------~~~------~-~~~ 143 (209)
T PRK11188 96 --LQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD--------------------IPR------A-MYL 143 (209)
T ss_pred --EecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH--------------------HHH------H-HHH
Confidence 33677653 267899999999999999432 11 11 000 0 111
Q ss_pred HHHHHHHHHHHhccCceEEEEeccCC
Q 044727 215 FTSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 215 ~~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
....|+.-.+.|+|||.+++..+...
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 34678888999999999999777554
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.00 E-value=1.1e-05 Score=78.31 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=82.5
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+-+|+|+|||+|.|++.+... ..+|+.-|.... . +....+.. ...+ . + +
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-----------------g~~V~avD~s~~-a------i~~~~~~~-~~~~---l-~--v 169 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-----------------GFDVTAVDINQQ-S------LENLQEIA-EKEN---L-N--I 169 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-----------------CCEEEEEECCHH-H------HHHHHHHH-HHcC---C-c--e
Confidence 459999999999999887221 267888887430 0 00000001 1111 1 1 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
..+.+++... -+++++|+++|..++|+++. .++..+|+.-
T Consensus 170 ~~~~~D~~~~-~~~~~fD~I~~~~vl~~l~~---------------------------------------~~~~~~l~~~ 209 (287)
T PRK12335 170 RTGLYDINSA-SIQEEYDFILSTVVLMFLNR---------------------------------------ERIPAIIKNM 209 (287)
T ss_pred EEEEechhcc-cccCCccEEEEcchhhhCCH---------------------------------------HHHHHHHHHH
Confidence 2233455332 23789999999999999632 1344557788
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccC-cccCCHHHHHHHHHhcCceeEeEEE
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFP-MYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
.+.|+|||++++......+.. ....| -+..+.+|+++.+.. |+|...+
T Consensus 210 ~~~LkpgG~~l~v~~~~~~~~--------------------------~~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 210 QEHTNPGGYNLIVCAMDTEDY--------------------------PCPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred HHhcCCCcEEEEEEecccccC--------------------------CCCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 999999999776543221110 01123 456789999999864 8887764
No 54
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=4.4e-05 Score=71.90 Aligned_cols=183 Identities=17% Similarity=0.157 Sum_probs=105.1
Q ss_pred hHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcch
Q 044727 45 KPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSF 124 (380)
Q Consensus 45 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~ 124 (380)
..+|.....++..-....+.+|+++|||.|...+.+++.. +.|.+.||+.|-..|--
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~~l~v~acDfsp~Ai---------- 110 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNNRLKVYACDFSPRAI---------- 110 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCCCeEEEEcCCChHHH----------
Confidence 4455655555543222224599999999997777663332 23459999988764211
Q ss_pred HHHhhhhcCCC-CCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHH
Q 044727 125 YERLKTERGHD-DFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSV 203 (380)
Q Consensus 125 ~~~~~~~~~~~-~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~ 203 (380)
.-+++..+-+ ..-..|+.=+-++=-...++.+|+|++.--+.| |-+|+.- .
T Consensus 111 -~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pek------------------------~ 162 (264)
T KOG2361|consen 111 -ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPEK------------------------M 162 (264)
T ss_pred -HHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChHH------------------------H
Confidence 1121111100 001234333334335666677888887655543 4444431 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccc-cccccCcccCCHHH
Q 044727 204 HKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKL-ESFHFPMYNPCVEE 282 (380)
Q Consensus 204 ~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~-d~f~~P~Y~ps~eE 282 (380)
.+=+..-.+-|||||.|++-=.|+.... .+ +=+ ++-.|++..+ .+==.+.|+.+.||
T Consensus 163 ------------~~a~~nl~~llKPGG~llfrDYg~~Dla-----ql----RF~-~~~~i~~nfYVRgDGT~~YfF~~ee 220 (264)
T KOG2361|consen 163 ------------QSVIKNLRTLLKPGGSLLFRDYGRYDLA-----QL----RFK-KGQCISENFYVRGDGTRAYFFTEEE 220 (264)
T ss_pred ------------HHHHHHHHHHhCCCcEEEEeecccchHH-----HH----hcc-CCceeecceEEccCCceeeeccHHH
Confidence 1226677899999999999988885221 11 111 2233333211 11126889999999
Q ss_pred HHHHHHhcCceeEeEEEEE
Q 044727 283 VRQVIEREGSFNIHQLETS 301 (380)
Q Consensus 283 ~~~~ie~~GsF~I~~~e~~ 301 (380)
+++++...| |...++++-
T Consensus 221 L~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 221 LDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred HHHHHHhcc-cchhcccce
Confidence 999999999 887766643
No 55
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=0.00056 Score=66.37 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchh-HHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHH
Q 044727 208 LDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTG-VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQV 286 (380)
Q Consensus 208 ~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~-~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ 286 (380)
..-..+.+..|++.-.+.|+|||+|++-.++....... .-+.| . ++ +..--+.||..++...
T Consensus 148 Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i----~-----~y--------iFPgG~lPs~~~i~~~ 210 (283)
T COG2230 148 EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFI----D-----KY--------IFPGGELPSISEILEL 210 (283)
T ss_pred HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHH----H-----Hh--------CCCCCcCCCHHHHHHH
Confidence 33334567788999999999999999999877522100 00011 1 11 2223466899999999
Q ss_pred HHhcCceeEeEEEEE
Q 044727 287 IEREGSFNIHQLETS 301 (380)
Q Consensus 287 ie~~GsF~I~~~e~~ 301 (380)
+++.| |.+...+.+
T Consensus 211 ~~~~~-~~v~~~~~~ 224 (283)
T COG2230 211 ASEAG-FVVLDVESL 224 (283)
T ss_pred HHhcC-cEEehHhhh
Confidence 99998 887555443
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.91 E-value=3.3e-05 Score=70.27 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=74.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..++.+.. .+ |..+|+.-|...+- +..... .....+ ..+ +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~~-------~~~~V~~iD~s~~~-------~~~a~~-~~~~~~---~~~--i 94 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------AR-------PELKLTLLESNHKK-------VAFLRE-VKAELG---LNN--V 94 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------HC-------CCCeEEEEeCcHHH-------HHHHHH-HHHHhC---CCC--e
Confidence 57999999999999988721 11 44788888974310 000000 111111 122 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
.-+.|+..+ +.+.+++|+++|.. +|++ | .+++.-
T Consensus 95 ~~i~~d~~~-~~~~~~fD~I~s~~-~~~~---~-----------------------------------------~~~~~~ 128 (181)
T TIGR00138 95 EIVNGRAED-FQHEEQFDVITSRA-LASL---N-----------------------------------------VLLELT 128 (181)
T ss_pred EEEecchhh-ccccCCccEEEehh-hhCH---H-----------------------------------------HHHHHH
Confidence 224567644 45678999998853 3221 1 113333
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccC
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFP 274 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 274 (380)
.+-|+|||++++.. |..... .+....+.+..+|+ .+.+.+.++.|
T Consensus 129 ~~~LkpgG~lvi~~-~~~~~~-----~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 129 LNLLKVGGYFLAYK-GKKYLD-----EIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred HHhcCCCCEEEEEc-CCCcHH-----HHHHHHHhhhhcCc-eEeeccccCCC
Confidence 67799999999874 332222 23333466666774 55567788887
No 57
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.90 E-value=4.6e-05 Score=74.26 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=101.6
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
-+|||+||+.|.-++.+. .+ .| -.|+.-| |+-.|..-|.-+..+.. . + ..+|.
T Consensus 117 k~VLDIGC~nGY~~frM~--------~~-------GA-~~ViGiD-P~~lf~~QF~~i~~~lg---~----~--~~~~~- 169 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRML--------GR-------GA-KSVIGID-PSPLFYLQFEAIKHFLG---Q----D--PPVFE- 169 (315)
T ss_pred CEEEEecCCCcHHHHHHh--------hc-------CC-CEEEEEC-CChHHHHHHHHHHHHhC---C----C--ccEEE-
Confidence 699999999999998872 11 14 5677778 77677777776655421 0 1 22332
Q ss_pred ccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 144 ~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
+|-..+.-.. .+++|.++|.-.|=-+.+ |-.. |+.-.
T Consensus 170 -lplgvE~Lp~-~~~FDtVF~MGVLYHrr~--------------------------Pl~~---------------L~~Lk 206 (315)
T PF08003_consen 170 -LPLGVEDLPN-LGAFDTVFSMGVLYHRRS--------------------------PLDH---------------LKQLK 206 (315)
T ss_pred -cCcchhhccc-cCCcCEEEEeeehhccCC--------------------------HHHH---------------HHHHH
Confidence 4555544444 788999998655433222 2223 66668
Q ss_pred HHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 224 EELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 224 ~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
..|+|||.|++.++.-+...+ .-++.++.+..|.-=|+.||+.-+...+++.| |+-.++
T Consensus 207 ~~L~~gGeLvLETlvi~g~~~---------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~ 265 (315)
T PF08003_consen 207 DSLRPGGELVLETLVIDGDEN---------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC 265 (315)
T ss_pred HhhCCCCEEEEEEeeecCCCc---------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence 899999999999986442110 12566777888888899999999999999999 774443
No 58
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.88 E-value=0.00012 Score=70.56 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=36.7
Q ss_pred CCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044727 147 GSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEEL 226 (380)
Q Consensus 147 gSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL 226 (380)
++.-+..+|.+++|+|+|.++|||++. |. ....|+.-++.|
T Consensus 192 ~dl~~~~~~~~~fD~I~crnvl~yf~~-~~--------------------------------------~~~~l~~l~~~L 232 (264)
T smart00138 192 HNLLAESPPLGDFDLIFCRNVLIYFDE-PT--------------------------------------QRKLLNRFAEAL 232 (264)
T ss_pred ccCCCCCCccCCCCEEEechhHHhCCH-HH--------------------------------------HHHHHHHHHHHh
Confidence 455455567899999999999999643 11 122366678999
Q ss_pred ccCceEEEE
Q 044727 227 KTEGRMVLN 235 (380)
Q Consensus 227 ~pgG~l~~~ 235 (380)
+|||+|++.
T Consensus 233 ~pGG~L~lg 241 (264)
T smart00138 233 KPGGYLFLG 241 (264)
T ss_pred CCCeEEEEE
Confidence 999999874
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.82 E-value=0.00014 Score=66.54 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=68.8
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
.-+|+|+|||+|..++.+... + |..+++.-|+-. .......++... ....++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~--------~-------p~~~v~gvD~~~----------~~l~~a~~~~~~-~~l~ni-- 68 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ--------N-------PDKNFLGIEIHT----------PIVLAANNKANK-LGLKNL-- 68 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh--------C-------CCCCEEEEEeeH----------HHHHHHHHHHHH-hCCCCE--
Confidence 358999999999998877332 1 668888888842 111110000000 111222
Q ss_pred eccCCCccc---CCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHG---RLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 143 ~~vpgSFy~---~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
.-+-|+... .++|++++|.++..+..+|..+ ... |..+ .-..||
T Consensus 69 ~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~-----------~~r~---------------------~~~~~l 115 (194)
T TIGR00091 69 HVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN-----------KRRI---------------------TQPHFL 115 (194)
T ss_pred EEEccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc-----------cccc---------------------CCHHHH
Confidence 224466543 3467889999999998888332 100 0000 013457
Q ss_pred HHHHHHhccCceEEEEecc
Q 044727 220 KFRSEELKTEGRMVLNFIG 238 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g 238 (380)
+.-++.|+|||.+++.+-.
T Consensus 116 ~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 116 KEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred HHHHHHhCCCCEEEEEeCC
Confidence 8889999999999998843
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.80 E-value=2.8e-05 Score=71.49 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=76.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
++-+++|+|||.|+||+-+.+. -+.|..-|....-...+- + .....+ .+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~-----------------G~~VtAvD~s~~al~~l~-------~-~a~~~~---l~--- 78 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ-----------------GFDVTAVDISPVALEKLQ-------R-LAEEEG---LD--- 78 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT-----------------T-EEEEEESSHHHHHHHH-------H-HHHHTT----T---
T ss_pred CCCcEEEcCCCCcHHHHHHHHC-----------------CCeEEEEECCHHHHHHHH-------H-HHhhcC---ce---
Confidence 4689999999999999988221 378888887431111111 1 111111 11
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+...-.++-+.-+ +..+|+++|...+|.|.. +. . ..+++.
T Consensus 79 i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~~--~~-~------------------------------------~~i~~~ 118 (192)
T PF03848_consen 79 IRTRVADLNDFDF-PEEYDFIVSTVVFMFLQR--EL-R------------------------------------PQIIEN 118 (192)
T ss_dssp EEEEE-BGCCBS--TTTEEEEEEESSGGGS-G--GG-H------------------------------------HHHHHH
T ss_pred eEEEEecchhccc-cCCcCEEEEEEEeccCCH--HH-H------------------------------------HHHHHH
Confidence 2222245533344 468999999999999653 11 1 122666
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
-.+.++|||.+++.++-..+.- + . ..+ |-+...++|++.... + |+|.+-+
T Consensus 119 m~~~~~pGG~~li~~~~~~~d~-----------------p---~----~~~-~~f~~~~~EL~~~y~--d-W~il~y~ 168 (192)
T PF03848_consen 119 MKAATKPGGYNLIVTFMETPDY-----------------P---C----PSP-FPFLLKPGELREYYA--D-WEILKYN 168 (192)
T ss_dssp HHHTEEEEEEEEEEEEB--SSS--------------------------SS---S--B-TTHHHHHTT--T-SEEEEEE
T ss_pred HHhhcCCcEEEEEEEecccCCC-----------------C---C----CCC-CCcccCHHHHHHHhC--C-CeEEEEE
Confidence 6889999999988665322111 0 0 112 334458889998886 3 8886653
No 61
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.79 E-value=1.6e-05 Score=64.65 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=59.3
Q ss_pred EEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeecc
Q 044727 66 FTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAA 145 (380)
Q Consensus 66 IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~v 145 (380)
|+|+|||+|.++..+.... + ..|+.+++.-|+-. .++ ...++.......+-.| +
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~----------~~l-~~~~~~~~~~~~~~~~---~ 54 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISP----------EML-ELAKKRFSEDGPKVRF---V 54 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-H----------HHH-HHHHHHSHHTTTTSEE---E
T ss_pred CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCH----------HHH-HHHHHhchhcCCceEE---E
Confidence 7999999999999885553 1 11458999999843 111 1111110001113345 3
Q ss_pred CCCcccCCCCCCccceEEcccc-cccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 146 PGSFHGRLFPPCFLNLVYSSFC-LHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSE 224 (380)
Q Consensus 146 pgSFy~~l~p~~svdl~~Ss~a-lhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 224 (380)
.+++-+-.++.+++|+++++.+ +|++++ +++..+|+.-++
T Consensus 55 ~~D~~~l~~~~~~~D~v~~~~~~~~~~~~---------------------------------------~~~~~ll~~~~~ 95 (101)
T PF13649_consen 55 QADARDLPFSDGKFDLVVCSGLSLHHLSP---------------------------------------EELEALLRRIAR 95 (101)
T ss_dssp ESCTTCHHHHSSSEEEEEE-TTGGGGSSH---------------------------------------HHHHHHHHHHHH
T ss_pred ECCHhHCcccCCCeeEEEEcCCccCCCCH---------------------------------------HHHHHHHHHHHH
Confidence 4666554567889999999665 887443 245667888899
Q ss_pred HhccCc
Q 044727 225 ELKTEG 230 (380)
Q Consensus 225 eL~pgG 230 (380)
-|+|||
T Consensus 96 ~l~pgG 101 (101)
T PF13649_consen 96 LLRPGG 101 (101)
T ss_dssp TEEEEE
T ss_pred HhCCCC
Confidence 999998
No 62
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.71 E-value=0.00072 Score=66.85 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=23.5
Q ss_pred CcccCCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 274 PMYNPCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 274 P~Y~ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
..|+.+.+|++.+++..| |+|.+.+...
T Consensus 274 r~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 274 RAYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 346779999999999999 9998877654
No 63
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.70 E-value=0.00011 Score=67.96 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred HHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 30 YANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 30 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
|-+....+.. .......+.+.+..+ +...+|+|+|||+|.++..+...+ |..+++.-|+
T Consensus 17 ~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~giDi 75 (204)
T TIGR03587 17 YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIYGVEI 75 (204)
T ss_pred hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEEEEEC
Confidence 5444443332 233444555555533 345789999999998888773221 3478888887
Q ss_pred CCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccc
Q 044727 110 PGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWL 171 (380)
Q Consensus 110 p~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWl 171 (380)
.. .+ ....+... . ...+ +.|++.+ .+|++++|++++..+||++
T Consensus 76 S~----------~~-l~~A~~~~--~--~~~~---~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 76 NE----------YA-VEKAKAYL--P--NINI---IQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CH----------HH-HHHHHhhC--C--CCcE---EEeeccC-CCCCCCEEEEEECChhhhC
Confidence 43 11 11111100 0 1123 3467766 7899999999999999875
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.68 E-value=9.6e-05 Score=73.82 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=66.5
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
-+|+|+|||+|..++.+.. ++ |..+|+..|... ..+ ..-...+. .++ ....+
T Consensus 198 g~VLDlGCG~G~ls~~la~--------~~-------p~~~v~~vDis~---~Al----~~A~~nl~-~n~---l~~~~-- 249 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLAR--------HS-------PKIRLTLSDVSA---AAL----ESSRATLA-ANG---LEGEV-- 249 (342)
T ss_pred CeEEEeccCcCHHHHHHHH--------hC-------CCCEEEEEECCH---HHH----HHHHHHHH-HcC---CCCEE--
Confidence 5899999999998776622 22 568899999842 111 11001111 111 11122
Q ss_pred ccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 144 ~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
++++.+.. .++++|+++|+-.+||.-.. . ..+...|++.-+
T Consensus 250 -~~~D~~~~--~~~~fDlIvsNPPFH~g~~~-------------------------~-----------~~~~~~~i~~a~ 290 (342)
T PRK09489 250 -FASNVFSD--IKGRFDMIISNPPFHDGIQT-------------------------S-----------LDAAQTLIRGAV 290 (342)
T ss_pred -EEcccccc--cCCCccEEEECCCccCCccc-------------------------c-----------HHHHHHHHHHHH
Confidence 34565553 36789999999999972110 0 124566788889
Q ss_pred HHhccCceEEEEec
Q 044727 224 EELKTEGRMVLNFI 237 (380)
Q Consensus 224 ~eL~pgG~l~~~~~ 237 (380)
+.|+|||.|++..-
T Consensus 291 ~~LkpgG~L~iVan 304 (342)
T PRK09489 291 RHLNSGGELRIVAN 304 (342)
T ss_pred HhcCcCCEEEEEEe
Confidence 99999999998764
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.68 E-value=0.00011 Score=74.20 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=65.3
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCcc
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGSC 140 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~~ 140 (380)
.+|+|+|||+|..++.+. +++ |..+|++.|... .-..+.+. .++.....+
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S~-----------~Av~~A~~N~~~n~~~~~~~- 282 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESP-----------MAVASSRLNVETNMPEALDR- 282 (378)
T ss_pred CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECCH-----------HHHHHHHHHHHHcCcccCce-
Confidence 589999999999877662 222 678999999842 11111111 111000001
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
+..+.++.+..+ ++.++|+|+|.--+|+...++ ..+ ...+++
T Consensus 283 -v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~-------------------------~~i-----------a~~l~~ 324 (378)
T PRK15001 283 -CEFMINNALSGV-EPFRFNAVLCNPPFHQQHALT-------------------------DNV-----------AWEMFH 324 (378)
T ss_pred -EEEEEccccccC-CCCCEEEEEECcCcccCccCC-------------------------HHH-----------HHHHHH
Confidence 122346666554 667899999998888743221 111 123566
Q ss_pred HHHHHhccCceEEEEe
Q 044727 221 FRSEELKTEGRMVLNF 236 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~ 236 (380)
.-.+.|+|||.+++..
T Consensus 325 ~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 325 HARRCLKINGELYIVA 340 (378)
T ss_pred HHHHhcccCCEEEEEE
Confidence 6678899999999985
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.67 E-value=0.00043 Score=64.65 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=84.4
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcch--HHHhhhhcCCCCCCcc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSF--YERLKTERGHDDFGSC 140 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~~~~~~~~~~~ 140 (380)
.-+|+|+|||.|+|++.+.++ -.+|+..|+...=-..+++...-. ...+...+.+....--
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-----------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-----------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-----------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 469999999999999988321 378888887542111111100000 0000000000000111
Q ss_pred eeeccCCCcccCCC-CCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLF-PPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 141 f~~~vpgSFy~~l~-p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
| +-++|++.-. +...+|+++-..++| .+|+. +...++
T Consensus 98 ~---~~~D~~~~~~~~~~~fD~i~D~~~~~---~l~~~------------------------------------~R~~~~ 135 (213)
T TIGR03840 98 I---FCGDFFALTAADLGPVDAVYDRAALI---ALPEE------------------------------------MRQRYA 135 (213)
T ss_pred E---EEccCCCCCcccCCCcCEEEechhhc---cCCHH------------------------------------HHHHHH
Confidence 2 2356654322 134578888777776 23332 233457
Q ss_pred HHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 220 KFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
+.-.+-|+|||++++.++...+.. ..-|-|.-+++|+++.+.. + |+|+.++
T Consensus 136 ~~l~~lLkpgG~~ll~~~~~~~~~---------------------------~~gpp~~~~~~eL~~~f~~-~-~~i~~~~ 186 (213)
T TIGR03840 136 AHLLALLPPGARQLLITLDYDQSE---------------------------MAGPPFSVSPAEVEALYGG-H-YEIELLE 186 (213)
T ss_pred HHHHHHcCCCCeEEEEEEEcCCCC---------------------------CCCcCCCCCHHHHHHHhcC-C-ceEEEEe
Confidence 777999999998777776442111 0125578899999999963 3 8888777
Q ss_pred EEe
Q 044727 300 TSH 302 (380)
Q Consensus 300 ~~~ 302 (380)
..+
T Consensus 187 ~~~ 189 (213)
T TIGR03840 187 SRD 189 (213)
T ss_pred ecc
Confidence 554
No 67
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00018 Score=66.52 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=91.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHH-HhhhhcCCCCCCcce
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYE-RLKTERGHDDFGSCF 141 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~~~~~~~~~~~f 141 (380)
-.-++++|||||+|=-.. +..|.-.|.+-| |.-.|-. +.+ +.+ ++.+.. -..|
T Consensus 77 K~~vLEvgcGtG~Nfkfy----------------~~~p~~svt~lD-pn~~mee-------~~~ks~~-E~k~~~-~~~f 130 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY----------------PWKPINSVTCLD-PNEKMEE-------IADKSAA-EKKPLQ-VERF 130 (252)
T ss_pred ccceEEecccCCCCcccc----------------cCCCCceEEEeC-CcHHHHH-------HHHHHHh-hccCcc-eEEE
Confidence 367899999999996543 122567788877 3311111 111 111 111010 1257
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+.|-+-+. -| +++.|+|.++...+|- |. .+ +. .-|+.
T Consensus 131 vva~ge~l-~~-l~d~s~DtVV~TlvLC--Sv-----e~-------------------~~---------------k~L~e 167 (252)
T KOG4300|consen 131 VVADGENL-PQ-LADGSYDTVVCTLVLC--SV-----ED-------------------PV---------------KQLNE 167 (252)
T ss_pred EeechhcC-cc-cccCCeeeEEEEEEEe--cc-----CC-------------------HH---------------HHHHH
Confidence 77666665 22 3999999999887763 22 11 11 11777
Q ss_pred HHHHhccCceEEEEeccCCCcch--hHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHT--GVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~--~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
-.+-|+|||++++.=-|++++.. .+|+...+-+-.+...|-.. --|..+.++++. |++..++
T Consensus 168 ~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~l---------------trd~~e~Leda~-f~~~~~k 231 (252)
T KOG4300|consen 168 VRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVL---------------TRDTGELLEDAE-FSIDSCK 231 (252)
T ss_pred HHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEE---------------ehhHHHHhhhcc-cccchhh
Confidence 78999999999999988887653 33333333333333333221 226667788776 8888877
Q ss_pred EEeec
Q 044727 300 TSHIS 304 (380)
Q Consensus 300 ~~~~~ 304 (380)
-+..+
T Consensus 232 r~~~~ 236 (252)
T KOG4300|consen 232 RFNFG 236 (252)
T ss_pred cccCC
Confidence 66533
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.65 E-value=0.00058 Score=69.17 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=89.0
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
-.++|+|||+|..++.+.... |+..++.-|+-. ++...-.++... .+..++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~---------------P~~~~iGIEI~~----------~~i~~a~~ka~~-~gL~NV~-- 175 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN---------------PNKLFIGIEIHT----------PSIEQVLKQIEL-LNLKNLL-- 175 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC---------------CCCCEEEEECCH----------HHHHHHHHHHHH-cCCCcEE--
Confidence 489999999999888773221 778999999843 121111111000 1123432
Q ss_pred ccCCCcc--cCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFH--GRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 144 ~vpgSFy--~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
.+.++.. -..+|++++|.++..+...| |.. .| ++. -...||+.
T Consensus 176 ~i~~DA~~ll~~~~~~s~D~I~lnFPdPW----~Kk------------rH----------------RRl---v~~~fL~e 220 (390)
T PRK14121 176 IINYDARLLLELLPSNSVEKIFVHFPVPW----DKK------------PH----------------RRV---ISEDFLNE 220 (390)
T ss_pred EEECCHHHhhhhCCCCceeEEEEeCCCCc----ccc------------ch----------------hhc---cHHHHHHH
Confidence 2345542 24689999999998776666 211 00 000 12456888
Q ss_pred HHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEEEE
Q 044727 222 RSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETS 301 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e~~ 301 (380)
-++.|+|||.+.+.+=- .+....++..+..-+...-+.. -+.|.+.. -+|..-....| -.|-++...
T Consensus 221 ~~RvLkpGG~l~l~TD~--------~~y~~~~~e~~~~~~~~~~~~~--~~~~~~i~--TkyE~r~~~~G-~~Iy~l~~~ 287 (390)
T PRK14121 221 ALRVLKPGGTLELRTDS--------ELYFEFSLELFLKLPKAKIEIK--KNAQLEVS--SKYEDRWKKQN-KDIYDLRIY 287 (390)
T ss_pred HHHHcCCCcEEEEEEEC--------HHHHHHHHHHHHhCCCceeecc--cCCCCCCC--CHHHHHHHHCC-CCEEEEEEE
Confidence 89999999999998831 2233333444433332222111 12233333 35555566667 455555544
Q ss_pred e
Q 044727 302 H 302 (380)
Q Consensus 302 ~ 302 (380)
.
T Consensus 288 ~ 288 (390)
T PRK14121 288 N 288 (390)
T ss_pred e
Confidence 3
No 69
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.62 E-value=0.0012 Score=62.13 Aligned_cols=100 Identities=27% Similarity=0.340 Sum_probs=67.9
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
+.-+|+|+|+|+|..+..++ +++ |.++++.-|||.. ++. .+. . + +--|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~----~~~--~-~--rv~~ 147 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQ----AKE--A-D--RVEF 147 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCC----HHH--T-T--TEEE
T ss_pred CccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhc----ccc--c-c--cccc
Confidence 44689999999999888773 323 7899999999850 111 111 1 1 2233
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+||+|+ ..+|. .|+++-++.||=.++ +|-..+|+.
T Consensus 148 ---~~gd~f-~~~P~--~D~~~l~~vLh~~~d---------------------------------------~~~~~iL~~ 182 (241)
T PF00891_consen 148 ---VPGDFF-DPLPV--ADVYLLRHVLHDWSD---------------------------------------EDCVKILRN 182 (241)
T ss_dssp ---EES-TT-TCCSS--ESEEEEESSGGGS-H---------------------------------------HHHHHHHHH
T ss_pred ---ccccHH-hhhcc--ccceeeehhhhhcch---------------------------------------HHHHHHHHH
Confidence 889999 88888 999999999964322 123455899
Q ss_pred HHHHhccC--ceEEEEecc
Q 044727 222 RSEELKTE--GRMVLNFIG 238 (380)
Q Consensus 222 Ra~eL~pg--G~l~~~~~g 238 (380)
-++.|+|| |++++.=.-
T Consensus 183 ~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 183 AAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHSEECTTEEEEEEEEE
T ss_pred HHHHhCCCCCCeEEEEeec
Confidence 99999999 998887554
No 70
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.62 E-value=0.00027 Score=67.41 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeccCCCcc--hhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhc
Q 044727 213 IDFTSFLKFRSEELKTEGRMVLNFIGNDKYH--TGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIERE 290 (380)
Q Consensus 213 ~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~--~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~ 290 (380)
+|...||.+-.+-|+|||++++++.-|.-.+ +.+ .+.+.+...|-.|- ..+-=|.+++|+..+++.+
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i--~~~E~vl~ivp~Gt---------h~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI--FLAEIVLRIVPKGT---------HTWEKFINPEELTSILNAN 240 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc--cHHHHHHHhcCCCC---------cCHHHcCCHHHHHHHHHhc
Confidence 4667789999999999999999999887111 011 12222233555554 2344467899999999999
Q ss_pred CceeEeEEE
Q 044727 291 GSFNIHQLE 299 (380)
Q Consensus 291 GsF~I~~~e 299 (380)
+ +.+..+.
T Consensus 241 ~-~~v~~v~ 248 (282)
T KOG1270|consen 241 G-AQVNDVV 248 (282)
T ss_pred C-cchhhhh
Confidence 7 7776664
No 71
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.62 E-value=0.00021 Score=65.40 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhh---hhcCCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLK---TERGHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~---~~~~~~~~~ 138 (380)
...+|+|+|||+|..++.+.... |..+|+.-|... ......+ ...+ ..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~-----------~~l~~A~~~~~~~~---l~ 95 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLG-----------KKIAFLREVAAELG---LK 95 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcH-----------HHHHHHHHHHHHcC---CC
Confidence 36899999999999988873321 457889888742 1111111 1111 12
Q ss_pred cceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 139 SCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 139 ~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
+ +.-+.++..+- -+++++|++++.. .. ++..|
T Consensus 96 ~--i~~~~~d~~~~-~~~~~fDlV~~~~-----------~~----------------------------------~~~~~ 127 (187)
T PRK00107 96 N--VTVVHGRAEEF-GQEEKFDVVTSRA-----------VA----------------------------------SLSDL 127 (187)
T ss_pred C--EEEEeccHhhC-CCCCCccEEEEcc-----------cc----------------------------------CHHHH
Confidence 2 22355666443 2367899999742 00 23346
Q ss_pred HHHHHHHhccCceEEEEec
Q 044727 219 LKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~ 237 (380)
++..++-|+|||++++...
T Consensus 128 l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 128 VELCLPLLKPGGRFLALKG 146 (187)
T ss_pred HHHHHHhcCCCeEEEEEeC
Confidence 7888999999999998864
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.60 E-value=0.00026 Score=58.67 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=25.9
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
..+|+|+|||+|..+..+.+.. |..+|+..|+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~---------------~~~~v~~vD~s 52 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV---------------PNGRVYAIERN 52 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC---------------CCceEEEEcCC
Confidence 3599999999999998884332 45788999974
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.59 E-value=0.00038 Score=62.61 Aligned_cols=124 Identities=12% Similarity=-0.001 Sum_probs=67.8
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+.+|+|+|||+|..++.+.. .. + +|+..|+-. ......+......... +
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~--------~~-------~--~v~~vD~s~-----------~~~~~a~~~~~~~~~~---~ 68 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKG--------KG-------K--CILTTDINP-----------FAVKELRENAKLNNVG---L 68 (179)
T ss_pred CCeEEEeCCChhHHHHHHHh--------cC-------C--EEEEEECCH-----------HHHHHHHHHHHHcCCc---e
Confidence 46899999999998877632 11 2 788888832 1111111110001011 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
..+.++++..+ .+++|+++|+..+|.....+.. + .|.+- .+. .. ..-...+..||+.-
T Consensus 69 ~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~--~-----~~~~~-~~~-~~-----------~~~~~~~~~~l~~~ 126 (179)
T TIGR00537 69 DVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR--G-----DWLDV-AID-GG-----------KDGRKVIDRFLDEL 126 (179)
T ss_pred EEEEccccccc--CCcccEEEECCCCCCCcchhcc--c-----chhhh-hhh-cC-----------CchHHHHHHHHHhH
Confidence 22447776643 4599999999888765432211 0 00000 000 00 00012356688888
Q ss_pred HHHhccCceEEEEeccC
Q 044727 223 SEELKTEGRMVLNFIGN 239 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~ 239 (380)
.+.|+|||++++...+.
T Consensus 127 ~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 127 PEILKEGGRVQLIQSSL 143 (179)
T ss_pred HHhhCCCCEEEEEEecc
Confidence 99999999999987543
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.58 E-value=0.00016 Score=64.82 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=65.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|..++.+.. .+ |..+|+..|.-. ..+ ....... ..++ ..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~--------~~-------~~~~v~~vDi~~---~a~----~~a~~n~-~~n~---~~~-- 82 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAK--------RG-------PDAKVTAVDINP---DAL----ELAKRNA-ERNG---LEN-- 82 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHH--------TS-------TCEEEEEEESBH---HHH----HHHHHHH-HHTT---CTT--
T ss_pred cCCeEEEecCChHHHHHHHHH--------hC-------CCCEEEEEcCCH---HHH----HHHHHHH-HhcC---ccc--
Confidence 357899999999999988722 22 667899999832 111 0000001 1111 122
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+..+..+.++.+- +.++|+++|.-=+|+-. ..- ..-+..|++.
T Consensus 83 v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~----------------------------~~~--------~~~~~~~i~~ 125 (170)
T PF05175_consen 83 VEVVQSDLFEALP-DGKFDLIVSNPPFHAGG----------------------------DDG--------LDLLRDFIEQ 125 (170)
T ss_dssp EEEEESSTTTTCC-TTCEEEEEE---SBTTS----------------------------HCH--------HHHHHHHHHH
T ss_pred ccccccccccccc-ccceeEEEEccchhccc----------------------------ccc--------hhhHHHHHHH
Confidence 3445677776554 89999999863322210 000 1124556777
Q ss_pred HHHHhccCceEEEEec
Q 044727 222 RSEELKTEGRMVLNFI 237 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~ 237 (380)
-.+.|+|||.+++..-
T Consensus 126 a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 126 ARRYLKPGGRLFLVIN 141 (170)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHhccCCCEEEEEee
Confidence 7899999999988664
No 75
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.56 E-value=0.0011 Score=62.64 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=37.1
Q ss_pred cCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 044727 151 GRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEG 230 (380)
Q Consensus 151 ~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG 230 (380)
..+=+++|||+|.+.-|+||+ |+.+|.+.-.+.||+.|
T Consensus 93 ~L~g~e~SVDlI~~Aqa~HWF------------------------------------------dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 93 DLLGGEESVDLITAAQAVHWF------------------------------------------DLERFYKEAYRVLRKDG 130 (261)
T ss_pred cccCCCcceeeehhhhhHHhh------------------------------------------chHHHHHHHHHHcCCCC
Confidence 344469999999999999993 45666777799999988
Q ss_pred eEEEEeccCC
Q 044727 231 RMVLNFIGND 240 (380)
Q Consensus 231 ~l~~~~~g~~ 240 (380)
-+++...-++
T Consensus 131 g~iavW~Y~d 140 (261)
T KOG3010|consen 131 GLIAVWNYND 140 (261)
T ss_pred CEEEEEEccC
Confidence 6666666553
No 76
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.55 E-value=0.00018 Score=63.85 Aligned_cols=109 Identities=16% Similarity=0.052 Sum_probs=65.5
Q ss_pred cCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSE 224 (380)
Q Consensus 145 vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 224 (380)
+-|+..+-.++++++|++++++++||+.+. ..+|+.-++
T Consensus 31 ~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~-----------------------------------------~~~l~ei~r 69 (160)
T PLN02232 31 IEGDAIDLPFDDCEFDAVTMGYGLRNVVDR-----------------------------------------LRAMKEMYR 69 (160)
T ss_pred EEechhhCCCCCCCeeEEEecchhhcCCCH-----------------------------------------HHHHHHHHH
Confidence 336776777899999999999999996432 123666799
Q ss_pred HhccCceEEEEeccCCCcc-h-hHHHHHHHHHHHHHHccCcccccccccccC----cccCCHHHHHHHHHhcCceeEeEE
Q 044727 225 ELKTEGRMVLNFIGNDKYH-T-GVFELMGMVLNDMVYEGLIEVSKLESFHFP----MYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 225 eL~pgG~l~~~~~g~~~~~-~-~~~~~l~~al~~mv~eG~i~~e~~d~f~~P----~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
.|||||.+++.-++..+.. . ..+..... .-+..-|.+... .+.+..- ..+++++|+.+++++.| |+..+.
T Consensus 70 vLkpGG~l~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 70 VLKPGSRVSILDFNKSNQSVTTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred HcCcCeEEEEEECCCCChHHHHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 9999999998877654211 0 11111100 000000111111 1112111 24689999999999999 875443
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.51 E-value=0.00021 Score=67.17 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=69.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhh---hhcCCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLK---TERGHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~---~~~~~~~~~ 138 (380)
++.+|+|+|||+|..++.+.... |..+++..|.-. ......+ ...+ ..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~-----------~~~~~a~~~~~~~~---~~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISP-----------EALAVARKNAARLG---LD 137 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCH-----------HHHHHHHHHHHHcC---CC
Confidence 34699999999998888774321 457888888732 1111111 1111 11
Q ss_pred cceeeccCCCcccCCCCCCccceEEcccccccccCC---CccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHH
Q 044727 139 SCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRM---PKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDF 215 (380)
Q Consensus 139 ~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~---P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~ 215 (380)
+ +.-+.+++.. .++++++|++++.--.+..+.. +..+...+ |.... .-......++
T Consensus 138 ~--~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e-----------------~~~~~-~~~~~~~~~~ 196 (251)
T TIGR03534 138 N--VTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHE-----------------PRLAL-FGGEDGLDFY 196 (251)
T ss_pred e--EEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcC-----------------CHHHH-cCCCcHHHHH
Confidence 1 1224577755 5688999999985333322211 11110000 00000 0011123567
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 044727 216 TSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
..|++.-.+.|+|||.+++..
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE
Confidence 788999999999999999865
No 78
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00029 Score=67.15 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEec
Q 044727 200 PFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 200 ~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
+.+.++..+-+..-++..+++.-++-|||||.+.+...
T Consensus 134 ~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 134 ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred cChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 44466777788888999999999999999999998874
No 79
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.42 E-value=0.0021 Score=60.15 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeE
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNI 295 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I 295 (380)
..+++.-++-|+|||.+++.++...+.. ..-|-|..+++|+++.+. +.|+|
T Consensus 135 ~~~~~~l~~lL~pgG~~~l~~~~~~~~~---------------------------~~gPp~~~~~~el~~~~~--~~~~i 185 (218)
T PRK13255 135 ERYVQQLAALLPAGCRGLLVTLDYPQEE---------------------------LAGPPFSVSDEEVEALYA--GCFEI 185 (218)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEeCCcc---------------------------CCCCCCCCCHHHHHHHhc--CCceE
Confidence 3446677899999997666554332111 012446889999999995 22888
Q ss_pred eEEEEEe
Q 044727 296 HQLETSH 302 (380)
Q Consensus 296 ~~~e~~~ 302 (380)
+.++..+
T Consensus 186 ~~~~~~~ 192 (218)
T PRK13255 186 ELLERQD 192 (218)
T ss_pred EEeeecc
Confidence 8877554
No 80
>PTZ00146 fibrillarin; Provisional
Probab=97.41 E-value=0.0018 Score=63.16 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=24.7
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
.+|||+|||+|..|..+...+ + ++-.||..|+.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiV-----------G---~~G~VyAVD~s 166 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLV-----------G---PEGVVYAVEFS 166 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-----------C---CCCEEEEEECc
Confidence 699999999999988774433 1 34578888763
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=97.40 E-value=0.0013 Score=63.73 Aligned_cols=120 Identities=9% Similarity=-0.007 Sum_probs=68.9
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..++.+... . +..+|+..|+-. ++-.+.+ ... . ...+
T Consensus 65 ~grVLDLGcGsGilsl~la~r--------~-------~~~~V~gVDisp-~al~~Ar----------~n~--~--~v~~- 113 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHR--------C-------KPEKIVCVELNP-EFARIGK----------RLL--P--EAEW- 113 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHh--------C-------CCCEEEEEECCH-HHHHHHH----------HhC--c--CCEE-
Confidence 368999999999877765221 1 237888889842 1111111 100 0 1123
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHH--HHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEI--DFTSFLK 220 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~--D~~~FL~ 220 (380)
+-+++..- .+..++|+++|.-..+++..... .+. ..|..|.. -.+ .+..||+
T Consensus 114 --v~~D~~e~-~~~~kFDlIIsNPPF~~l~~~d~--~~~---~~~~GG~~------------------g~~~l~~~~~l~ 167 (279)
T PHA03411 114 --ITSDVFEF-ESNEKFDVVISNPPFGKINTTDT--KDV---FEYTGGEF------------------EFKVMTLGQKFA 167 (279)
T ss_pred --EECchhhh-cccCCCcEEEEcCCccccCchhh--hhh---hhhccCcc------------------ccccccHHHHHh
Confidence 34677543 35678999999988888542111 000 01110000 001 2567899
Q ss_pred HHHHHhccCceEEEEeccC
Q 044727 221 FRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g~ 239 (380)
..+.-|+|+|.+.+.+-|+
T Consensus 168 ~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 168 DVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred hhHheecCCceEEEEEecc
Confidence 9999999999888876554
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.39 E-value=0.00039 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
...+|+|+|||+|..++.+.... |..+|+..|.-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~---------------~~~~v~~vD~s 64 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF---------------PSLQVTAIERN 64 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC---------------CCCEEEEEECC
Confidence 35799999999999998883321 45788888873
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.34 E-value=0.0011 Score=64.45 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=67.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGS 139 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~ 139 (380)
+.+|+|+|||+|..++.+.... |..+|+..|+.. ... ...+. ..+.. ..-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~---------------~~~~v~avDis~----------~al-~~A~~n~~~~~~~-~~i 174 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF---------------PEAEVDAVDISP----------DAL-AVAEINIERHGLE-DRV 174 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC---------------CCCEEEEEECCH----------HHH-HHHHHHHHHcCCC-CcE
Confidence 4789999999999888873321 457899999842 111 11111 11100 011
Q ss_pred ceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHH----HHHH--HHHHH
Q 044727 140 CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVH----KAYL--DQFEI 213 (380)
Q Consensus 140 ~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~----~ay~--~Q~~~ 213 (380)
.| +.+++.+. +|+.++|+++|. |+.+.... + ... ++++. .|.. +.--.
T Consensus 175 ~~---~~~D~~~~-~~~~~fD~Iv~N---------PPy~~~~~---------~--~~l--~~~~~~ep~~al~gg~dGl~ 228 (284)
T TIGR03533 175 TL---IQSDLFAA-LPGRKYDLIVSN---------PPYVDAED---------M--ADL--PAEYHHEPELALASGEDGLD 228 (284)
T ss_pred EE---EECchhhc-cCCCCccEEEEC---------CCCCCccc---------h--hhC--CHhhhcCHHHHhcCCCcHHH
Confidence 23 44676554 477789999986 44432210 0 000 11110 0000 00113
Q ss_pred HHHHHHHHHHHHhccCceEEEEec
Q 044727 214 DFTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 214 D~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
....|++.-.+.|+|||++++.+.
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 446688888999999999998875
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.33 E-value=0.001 Score=60.26 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhccCceEEEEeccC
Q 044727 214 DFTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 214 D~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
+...+|+.-.+.|+|||++++..+..
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEccC
Confidence 56677888899999999999976543
No 85
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.29 E-value=0.00066 Score=63.34 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=79.3
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCC--CCCCc
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGH--DDFGS 139 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~--~~~~~ 139 (380)
+..+.+|.|||-|+-|-.++..+ --+|-+.|. . +.|.+.++...+. .....
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~----------------f~~VDlVEp-~----------~~Fl~~a~~~l~~~~~~v~~ 107 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV----------------FDEVDLVEP-V----------EKFLEQAKEYLGKDNPRVGE 107 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-----------------SEEEEEES------------HHHHHHHHHHTCCGGCCEEE
T ss_pred CcceEEecccccchhHHHHHHHh----------------cCEeEEecc-C----------HHHHHHHHHHhcccCCCcce
Confidence 46899999999999886552111 012222221 1 2333333222110 12235
Q ss_pred ceeeccCCCcccCCCCC-CccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 140 CFIAAAPGSFHGRLFPP-CFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 140 ~f~~~vpgSFy~~l~p~-~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
+|.+|+- +| -|+ +.+|+||.=||+..| +| .||..|
T Consensus 108 ~~~~gLQ-~f----~P~~~~YDlIW~QW~lghL-------TD--------------------------------~dlv~f 143 (218)
T PF05891_consen 108 FYCVGLQ-DF----TPEEGKYDLIWIQWCLGHL-------TD--------------------------------EDLVAF 143 (218)
T ss_dssp EEES-GG-G--------TT-EEEEEEES-GGGS--------H--------------------------------HHHHHH
T ss_pred EEecCHh-hc----cCCCCcEeEEEehHhhccC-------CH--------------------------------HHHHHH
Confidence 6666543 33 464 799999987776664 33 489999
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
|++..+.|+|||.+++= .|.+. .|. ..+|. .=-...||.+.++.+++++| ++|.+.
T Consensus 144 L~RCk~~L~~~G~IvvK----EN~~~---------------~~~---~~~D~-~DsSvTRs~~~~~~lF~~AG-l~~v~~ 199 (218)
T PF05891_consen 144 LKRCKQALKPNGVIVVK----ENVSS---------------SGF---DEFDE-EDSSVTRSDEHFRELFKQAG-LRLVKE 199 (218)
T ss_dssp HHHHHHHEEEEEEEEEE----EEEES---------------SSE---EEEET-TTTEEEEEHHHHHHHHHHCT--EEEEE
T ss_pred HHHHHHhCcCCcEEEEE----ecCCC---------------CCC---cccCC-ccCeeecCHHHHHHHHHHcC-CEEEEe
Confidence 99999999999988862 12210 010 01111 12345688999999999999 888776
Q ss_pred EE
Q 044727 299 ET 300 (380)
Q Consensus 299 e~ 300 (380)
+.
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 86
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.24 E-value=0.0014 Score=60.44 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=34.6
Q ss_pred CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEE
Q 044727 154 FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMV 233 (380)
Q Consensus 154 ~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~ 233 (380)
.|++++|+++-|=.+++|+.. .|+..++..-...|+|||.||
T Consensus 102 ~P~~~FDLIV~SEVlYYL~~~--------------------------------------~~L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 102 WPEGRFDLIVLSEVLYYLDDA--------------------------------------EDLRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp --SS-EEEEEEES-GGGSSSH--------------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCeeEEEEehHhHcCCCH--------------------------------------HHHHHHHHHHHHHhCCCCEEE
Confidence 389999999999999997652 245566777789999999999
Q ss_pred EEec
Q 044727 234 LNFI 237 (380)
Q Consensus 234 ~~~~ 237 (380)
+...
T Consensus 144 ~g~~ 147 (201)
T PF05401_consen 144 FGHA 147 (201)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9775
No 87
>PRK04266 fibrillarin; Provisional
Probab=97.22 E-value=0.0037 Score=58.92 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.5
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
..+|+|+|||+|..|+.+...+ +.-.|+.-|+-
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~ 105 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFA 105 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECC
Confidence 3699999999999988773322 23578888874
No 88
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.19 E-value=0.00063 Score=70.23 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=47.8
Q ss_pred cCCCcccCCCCCCccceEEccccc-ccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHGRLFPPCFLNLVYSSFCL-HWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 145 vpgSFy~~l~p~~svdl~~Ss~al-hWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
+-|+- ..+||++++|++|++-|+ .|.+.- | +| |----
T Consensus 169 ~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~~---------------g-~~-------------------------l~evd 206 (506)
T PF03141_consen 169 VLGSQ-RLPFPSNAFDMVHCSRCLIPWHPND---------------G-FL-------------------------LFEVD 206 (506)
T ss_pred hhccc-cccCCccchhhhhcccccccchhcc---------------c-ce-------------------------eehhh
Confidence 44555 889999999999999886 454332 1 11 11127
Q ss_pred HHhccCceEEEEeccCC---C-cchhHHHHHHHHHHHHHHcc
Q 044727 224 EELKTEGRMVLNFIGND---K-YHTGVFELMGMVLNDMVYEG 261 (380)
Q Consensus 224 ~eL~pgG~l~~~~~g~~---~-~~~~~~~~l~~al~~mv~eG 261 (380)
|.|+|||.++++-.-.. . .....|+.+.+....|-.+-
T Consensus 207 RvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~ 248 (506)
T PF03141_consen 207 RVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKK 248 (506)
T ss_pred hhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999877432 1 11156666665555555543
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.17 E-value=0.0011 Score=51.41 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=60.3
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeec
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAA 144 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~ 144 (380)
+|+|+|||.|.++..+.. .+..+++..|+..+-....-+. .... ......|+
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~---------~~~~-~~~~~~~~-- 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKA---------AAAL-LADNVEVL-- 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHH---------Hhcc-cccceEEE--
Confidence 589999999998776622 0247888888743211111100 0000 00012232
Q ss_pred cCCCcccCCC-CCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHGRLF-PPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 145 vpgSFy~~l~-p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
-+++..... +..++|+++....+++. . .+...+++.-.
T Consensus 53 -~~~~~~~~~~~~~~~d~i~~~~~~~~~--------~--------------------------------~~~~~~l~~~~ 91 (107)
T cd02440 53 -KGDAEELPPEADESFDVIISDPPLHHL--------V--------------------------------EDLARFLEEAR 91 (107)
T ss_pred -EcChhhhccccCCceEEEEEccceeeh--------h--------------------------------hHHHHHHHHHH
Confidence 244444433 67789999999888885 0 12334466777
Q ss_pred HHhccCceEEEE
Q 044727 224 EELKTEGRMVLN 235 (380)
Q Consensus 224 ~eL~pgG~l~~~ 235 (380)
+-|+|||.++++
T Consensus 92 ~~l~~~g~~~~~ 103 (107)
T cd02440 92 RLLKPGGVLVLT 103 (107)
T ss_pred HHcCCCCEEEEE
Confidence 889999999876
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.16 E-value=0.0009 Score=61.79 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=45.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGS 139 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~ 139 (380)
..+|+|+|||+|..|..+...+ . +.-+|+..|.-. ......+. ..+ . ..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~-------------~-~~g~V~~iD~~~-----------~~~~~a~~~l~~~~-~-~~~ 125 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI-------------E-RRGKVYTVEIVK-----------ELAIYAAQNIERLG-Y-WGV 125 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc-------------C-CCCEEEEEeCCH-----------HHHHHHHHHHHHcC-C-CCc
Confidence 4799999999999997773322 0 235788888732 11111111 111 0 011
Q ss_pred -ceeeccCCCcccCCCCCCccceEEccccccc
Q 044727 140 -CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHW 170 (380)
Q Consensus 140 -~f~~~vpgSFy~~l~p~~svdl~~Ss~alhW 170 (380)
.+ +-|++.+-+.+..++|.+++..++++
T Consensus 126 v~~---~~~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 126 VEV---YHGDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred EEE---EECCcccCCccCCCccEEEEccCcch
Confidence 23 34676554555679999999887765
No 91
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.16 E-value=0.0016 Score=60.43 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=43.7
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFG 138 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~ 138 (380)
...+|+|+|||+|.+|..+.... .++.+|+..|.-. ......+. ..+.+ +
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~-----------~~~~~A~~~~~~~g~~--~ 129 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP-----------ELAEKAERRLRKLGLD--N 129 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-----------HHHHHHHHHHHHCCCC--C
Confidence 34799999999999998763321 1346788888732 11111111 11101 1
Q ss_pred cceeeccCCCcccCCCCCCccceEEcccc
Q 044727 139 SCFIAAAPGSFHGRLFPPCFLNLVYSSFC 167 (380)
Q Consensus 139 ~~f~~~vpgSFy~~l~p~~svdl~~Ss~a 167 (380)
..+ +.|+...-+.+...+|++++..+
T Consensus 130 v~~---~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 130 VIV---IVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred eEE---EECCcccCCcccCCCCEEEEcCC
Confidence 233 34676555555678999987644
No 92
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.07 E-value=0.0015 Score=60.61 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
++..+|||+|||++..+..+ . ....|+--||-..+ +.+
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n------------------------~~V 108 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPN------------------------PRV 108 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS------------------------TTE
T ss_pred CCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCC------------------------CCE
Confidence 55689999999998776322 1 13677777885300 111
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
-+ -+.-.-+++++|+|+++-..+|.= .||..||+
T Consensus 109 ta----cdia~vPL~~~svDv~VfcLSLMG------------------------------------------Tn~~~fi~ 142 (219)
T PF05148_consen 109 TA----CDIANVPLEDESVDVAVFCLSLMG------------------------------------------TNWPDFIR 142 (219)
T ss_dssp EE----S-TTS-S--TT-EEEEEEES---S------------------------------------------S-HHHHHH
T ss_pred EE----ecCccCcCCCCceeEEEEEhhhhC------------------------------------------CCcHHHHH
Confidence 11 233456679999999998877642 16777888
Q ss_pred HHHHHhccCceEEEEec
Q 044727 221 FRSEELKTEGRMVLNFI 237 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~ 237 (380)
-=.|.|||||.|.+.=.
T Consensus 143 EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 143 EANRVLKPGGILKIAEV 159 (219)
T ss_dssp HHHHHEEEEEEEEEEEE
T ss_pred HHHheeccCcEEEEEEe
Confidence 88999999999988743
No 93
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.06 E-value=0.0055 Score=56.23 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCcccCC--CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 147 GSFHGRL--FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSE 224 (380)
Q Consensus 147 gSFy~~l--~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 224 (380)
|+..+-| ||++|+|.++-+-+||=+.+ |..+. .+
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL-------------------------------------------~E 97 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL-------------------------------------------EE 97 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH-------------------------------------------HH
Confidence 4444333 79999999999999998655 33322 33
Q ss_pred HhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcc------cCCHHHHHHHHHhcCceeEeEE
Q 044727 225 ELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMY------NPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 225 eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y------~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
-|+-|...+++|+-- ..|..- .++.-.|..+..+ .+..+|| +-|..++++..++.| ++|.+-
T Consensus 98 mlRVgr~~IVsFPNF-----g~W~~R----~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~ 165 (193)
T PF07021_consen 98 MLRVGRRAIVSFPNF-----GHWRNR----LQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEER 165 (193)
T ss_pred HHHhcCeEEEEecCh-----HHHHHH----HHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEE
Confidence 477888999998633 223332 3343447666653 3333444 469999999999999 899888
Q ss_pred EEEeecC
Q 044727 299 ETSHISW 305 (380)
Q Consensus 299 e~~~~~~ 305 (380)
..+...+
T Consensus 166 ~~~~~~~ 172 (193)
T PF07021_consen 166 VFLDGGR 172 (193)
T ss_pred EEEcCCC
Confidence 7776554
No 94
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.05 E-value=0.0012 Score=62.46 Aligned_cols=152 Identities=17% Similarity=0.095 Sum_probs=88.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCc
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGS 139 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~ 139 (380)
-.+|+|+|||-|..|..+ .+ .-..|+..|+.. .+ .+-.+. +.| ..-
T Consensus 60 g~~vLDvGCGgG~Lse~m--------Ar---------~Ga~VtgiD~se----------~~-I~~Ak~ha~e~g---v~i 108 (243)
T COG2227 60 GLRVLDVGCGGGILSEPL--------AR---------LGASVTGIDASE----------KP-IEVAKLHALESG---VNI 108 (243)
T ss_pred CCeEEEecCCccHhhHHH--------HH---------CCCeeEEecCCh----------HH-HHHHHHhhhhcc---ccc
Confidence 389999999999666555 22 138999999854 22 221221 111 011
Q ss_pred ceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 044727 140 CFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFL 219 (380)
Q Consensus 140 ~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL 219 (380)
-| .++.-.+.....+++|+|.|.=.|+- +|.. . .|+
T Consensus 109 ~y---~~~~~edl~~~~~~FDvV~cmEVlEH---v~dp-----------------------~---------------~~~ 144 (243)
T COG2227 109 DY---RQATVEDLASAGGQFDVVTCMEVLEH---VPDP-----------------------E---------------SFL 144 (243)
T ss_pred cc---hhhhHHHHHhcCCCccEEEEhhHHHc---cCCH-----------------------H---------------HHH
Confidence 13 23444455555689999987666554 5442 1 268
Q ss_pred HHHHHHhccCceEEEEeccCCCcch-hHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 220 KFRSEELKTEGRMVLNFIGNDKYHT-GVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 220 ~~Ra~eL~pgG~l~~~~~g~~~~~~-~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
+..++-+||||.++++++-|..... ...-..+-+++ ++-.|--+-+ . +-.++|+...+...+ |++...
T Consensus 145 ~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~---k------~irp~El~~~~~~~~-~~~~~~ 213 (243)
T COG2227 145 RACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYR---K------FIKPAELIRWLLGAN-LKIIDR 213 (243)
T ss_pred HHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHH---H------hcCHHHHHHhcccCC-ceEEee
Confidence 9999999999999999998874331 00011122222 3333321111 1 235778888887766 666655
Q ss_pred EE
Q 044727 299 ET 300 (380)
Q Consensus 299 e~ 300 (380)
.-
T Consensus 214 ~g 215 (243)
T COG2227 214 KG 215 (243)
T ss_pred cc
Confidence 43
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.04 E-value=0.0012 Score=60.98 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
...+|+|+|||+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 3589999999999998754
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=97.02 E-value=0.0067 Score=56.59 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=84.5
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..++.+.. . ...+++..|+.. ..+.. ...... ..+ ....+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~---~~l~~----a~~n~~-~~~---~~~~~- 88 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISR---RAVRS----ARLNAL-LAG---VDVDV- 88 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCH---HHHHH----HHHHHH-HhC---CeeEE-
Confidence 36999999999998876621 1 114778888743 11110 000000 111 11122
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+-+++.. .++.+++|++++.--.+..+... ..++....+|+.+ . --..++..|++.-
T Consensus 89 --~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~------------~~~~~~~~~l~~a 145 (223)
T PRK14967 89 --RRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------P------------DGRAVLDRLCDAA 145 (223)
T ss_pred --EECchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------C------------cHHHHHHHHHHHH
Confidence 3477755 46788999999864322221110 0000000001100 0 0123567788888
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcC
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREG 291 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~G 291 (380)
.+.|+|||++++....... +.+++..+...| +.-+.+....+|+ .+..-.....+++.|
T Consensus 146 ~~~Lk~gG~l~~~~~~~~~--------~~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 146 PALLAPGGSLLLVQSELSG--------VERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred HHhcCCCcEEEEEEecccC--------HHHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 8999999999987654321 122333343334 3344445555664 222223446677777
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.97 E-value=0.0043 Score=61.12 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCcc
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGSC 140 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~~ 140 (380)
.+|+|+|||+|..++.+... + |..+|+..|+.. ... ...+. ..+.. ..-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~--------~-------p~~~V~avDis~----------~al-~~A~~n~~~~~l~-~~i~ 187 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA--------F-------PDAEVDAVDISP----------DAL-AVAEINIERHGLE-DRVT 187 (307)
T ss_pred CEEEEEechhhHHHHHHHHH--------C-------CCCEEEEEeCCH----------HHH-HHHHHHHHHhCCC-CcEE
Confidence 68999999999988877322 1 568899999842 111 11111 11100 0112
Q ss_pred eeeccCCCcccCCCCCCccceEEcc
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSS 165 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss 165 (380)
| +-+++.+. +|++++|+++|.
T Consensus 188 ~---~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 188 L---IESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred E---EECchhhh-CCCCCccEEEEC
Confidence 3 44777554 467789999986
No 98
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.95 E-value=0.0029 Score=58.78 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=44.9
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..|..+...+ .+..+|+.-|.-. ++-...+ +.+. ..+ ..+ +
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~-~~~~~a~------~~l~-~~g---~~~--v 129 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIP-ELAEKAK------KTLK-KLG---YDN--V 129 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCH-HHHHHHH------HHHH-HcC---CCC--e
Confidence 4799999999999997763321 1235777777621 1111111 0011 111 112 1
Q ss_pred eccCCCcccCCCCCCccceEEccccc
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCL 168 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~al 168 (380)
.-+-|+....+.+.+.+|++++..++
T Consensus 130 ~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 130 EVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred EEEECCcccCCCcCCCcCEEEECCCc
Confidence 22447776666677889999887664
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.95 E-value=0.0037 Score=63.92 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=43.0
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhh-cCCCCCCccee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTE-RGHDDFGSCFI 142 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~-~~~~~~~~~f~ 142 (380)
.+|+|+|||+|..++.+... . |..+|+..|+.. .+. +..+.+ .. ...+-.|
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~--------~-------p~a~VtAVDiS~----------~AL-e~AreNa~~-~g~rV~f- 304 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALE--------R-------PDAFVRASDISP----------PAL-ETARKNAAD-LGARVEF- 304 (423)
T ss_pred CEEEEEeChhhHHHHHHHHh--------C-------CCCEEEEEECCH----------HHH-HHHHHHHHH-cCCcEEE-
Confidence 58999999999998877322 1 567899999842 111 111111 00 1111223
Q ss_pred eccCCCcccCCCC-CCccceEEcc
Q 044727 143 AAAPGSFHGRLFP-PCFLNLVYSS 165 (380)
Q Consensus 143 ~~vpgSFy~~l~p-~~svdl~~Ss 165 (380)
+-|++.+..+| ..++|+++|+
T Consensus 305 --i~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 305 --AHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred --EEcchhccccccCCCccEEEEC
Confidence 44777665554 4689999995
No 100
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.92 E-value=0.0032 Score=60.14 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
++.++|+|+|||.+..+... + -.|+--||-. .. ..+
T Consensus 179 ~~~~vIaD~GCGEakiA~~~-------------------~-~kV~SfDL~a-----------~~-------------~~V 214 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASSE-------------------R-HKVHSFDLVA-----------VN-------------ERV 214 (325)
T ss_pred cCceEEEecccchhhhhhcc-------------------c-cceeeeeeec-----------CC-------------Cce
Confidence 66899999999998765411 2 4555567632 10 122
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
-+ -+.-+-++++.|+|+++...+|+= .||..|++
T Consensus 215 ~~----cDm~~vPl~d~svDvaV~CLSLMg------------------------------------------tn~~df~k 248 (325)
T KOG3045|consen 215 IA----CDMRNVPLEDESVDVAVFCLSLMG------------------------------------------TNLADFIK 248 (325)
T ss_pred ee----ccccCCcCccCcccEEEeeHhhhc------------------------------------------ccHHHHHH
Confidence 22 345567889999999887665531 26778888
Q ss_pred HHHHHhccCceEEEEecc
Q 044727 221 FRSEELKTEGRMVLNFIG 238 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~g 238 (380)
--.+.|+|||.+++.=.-
T Consensus 249 Ea~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 249 EANRILKPGGLLYIAEVK 266 (325)
T ss_pred HHHHHhccCceEEEEehh
Confidence 889999999999988653
No 101
>PLN03075 nicotianamine synthase; Provisional
Probab=96.92 E-value=0.0042 Score=60.86 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=64.5
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
.+-+|||+|||.|+.|..++.. ... |..++..-|.-. +-+.+-+.+-. ...+ -...-.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa------~~~-------p~~~~~giD~d~-~ai~~Ar~~~~------~~~g-L~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK------HHL-------PTTSFHNFDIDP-SANDVARRLVS------SDPD-LSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH------hcC-------CCCEEEEEeCCH-HHHHHHHHHhh------hccC-ccCCcEE
Confidence 5789999999999988776332 211 557788888742 22222221110 0011 0012345
Q ss_pred eeccCCCcccCCC-CCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLF-PPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 142 ~~~vpgSFy~~l~-p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
.. |+--+ +. +.+.+|++|+. +||-..+.++ ..+ |+
T Consensus 182 ~~---~Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k------------------------~~v---------------L~ 217 (296)
T PLN03075 182 HT---ADVMD-VTESLKEYDVVFLA-ALVGMDKEEK------------------------VKV---------------IE 217 (296)
T ss_pred EE---Cchhh-cccccCCcCEEEEe-cccccccccH------------------------HHH---------------HH
Confidence 43 44323 23 24789999999 7666443211 112 77
Q ss_pred HHHHHhccCceEEEEe
Q 044727 221 FRSEELKTEGRMVLNF 236 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~ 236 (380)
.-++.|+|||.+++.+
T Consensus 218 ~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 218 HLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHhcCCCcEEEEec
Confidence 7789999999999988
No 102
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.90 E-value=0.0064 Score=62.44 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=73.4
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|.-|+.+...+ +..+|+..|.-.+= +.......+ ..| .. +-+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~-------l~~~~~n~~-r~g---~~-~~v 291 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHR-------LKRVYENLK-RLG---LT-IKA 291 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHH-------HHHHHHHHH-HcC---CC-eEE
Confidence 3799999999999999874332 23688888884311 111111111 111 11 222
Q ss_pred eccCCCcccCCC--CCCccceEEc---ccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLF--PPCFLNLVYS---SFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 143 ~~vpgSFy~~l~--p~~svdl~~S---s~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
..+.|+.....+ +.+++|.++. .++..-+.+.|.... .+ + +..+ ....+.-..
T Consensus 292 ~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------~~--------~-~~~~-----~~l~~lQ~~ 349 (426)
T TIGR00563 292 ETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------LR--------K-PRDI-----AELAELQSE 349 (426)
T ss_pred EEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh--------cC--------C-HHHH-----HHHHHHHHH
Confidence 223454433222 6778999985 344444455555311 11 0 2222 233334466
Q ss_pred HHHHHHHHhccCceEEEEeccCC
Q 044727 218 FLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+|..=++-|||||+|+.++..-.
T Consensus 350 lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCC
Confidence 78888999999999999988765
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.81 E-value=0.0068 Score=58.80 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=66.1
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhh---hcCCCCCCcc
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKT---ERGHDDFGSC 140 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~---~~~~~~~~~~ 140 (380)
.+|+|+|||+|..++.+.... |..+|+..|+.. ... ...+. ..+.. ..-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~----------~al-~~a~~n~~~~~~~-~~v~ 168 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISP----------DAL-AVAEENAEKNQLE-HRVE 168 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCH----------HHH-HHHHHHHHHcCCC-CcEE
Confidence 689999999998887773321 457899999842 111 10111 11100 0123
Q ss_pred eeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 141 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
| +.|+++.. +|++++|+++|. |+.+....- ... + .+.... |..+.-. -.---.+...|+.
T Consensus 169 ~---~~~d~~~~-~~~~~fDlIvsN---------PPyi~~~~~-~~~-~-~~~~~e---P~~AL~g-g~dgl~~~~~ii~ 228 (284)
T TIGR00536 169 F---IQSNLFEP-LAGQKIDIIVSN---------PPYIDEEDL-ADL-P-NVVRFE---PLLALVG-GDDGLNILRQIIE 228 (284)
T ss_pred E---EECchhcc-CcCCCccEEEEC---------CCCCCcchh-hcC-C-cccccC---cHHHhcC-CCcHHHHHHHHHH
Confidence 3 44777654 466689999985 222221100 000 0 000000 1100000 0001236677888
Q ss_pred HHHHHhccCceEEEEec
Q 044727 221 FRSEELKTEGRMVLNFI 237 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~ 237 (380)
.-.+.|+|||++++.+.
T Consensus 229 ~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 229 LAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHhccCCCEEEEEEC
Confidence 88899999999998885
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.80 E-value=0.016 Score=52.86 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=35.0
Q ss_pred CccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccC
Q 044727 189 KRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGL 262 (380)
Q Consensus 189 kg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~ 262 (380)
.+.|+|..+. .+...|+....-|+|||++|++.. ..+.+..++..|..-|.
T Consensus 103 ~daiFIGGg~---------------~i~~ile~~~~~l~~ggrlV~nai--------tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 103 PDAIFIGGGG---------------NIEEILEAAWERLKPGGRLVANAI--------TLETLAKALEALEQLGG 153 (187)
T ss_pred CCEEEECCCC---------------CHHHHHHHHHHHcCcCCeEEEEee--------cHHHHHHHHHHHHHcCC
Confidence 3567777764 334458888899999999999984 34455555666655554
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.80 E-value=0.0054 Score=63.06 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=68.9
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|.-|+.+.+.. +...|+..|+-. .. +....+... ..| ....+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~---~~----l~~~~~n~~-~~g---~~~~~- 297 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDA---QR----LERVRENLQ-RLG---LKATV- 297 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCH---HH----HHHHHHHHH-HcC---CCeEE-
Confidence 4689999999999998774432 226788888743 00 011111111 111 11123
Q ss_pred eccCCCccc--CCCCCCccceEEc---ccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHG--RLFPPCFLNLVYS---SFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 143 ~~vpgSFy~--~l~p~~svdl~~S---s~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
+.++... ..++++++|.+++ .+...-+.+-|.... . . .++-. ..+.+....
T Consensus 298 --~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~--------~-------~---~~~~l----~~l~~~q~~ 353 (427)
T PRK10901 298 --IVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW--------L-------R---RPEDI----AALAALQSE 353 (427)
T ss_pred --EEcCcccchhhcccCCCCEEEECCCCCcccccccCccccc--------c-------C---CHHHH----HHHHHHHHH
Confidence 3355532 2245678999983 122222223333211 0 0 11111 233445567
Q ss_pred HHHHHHHHhccCceEEEEeccCC
Q 044727 218 FLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+|..-.+.|+|||+|+.++..-.
T Consensus 354 iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCC
Confidence 88888999999999999987544
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.75 E-value=0.006 Score=58.25 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhccCceEEEEe
Q 044727 213 IDFTSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 213 ~D~~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
.++..|++.-.+-|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 466778888889999999999965
No 107
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.68 E-value=0.018 Score=53.36 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=89.9
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCC-CCcce--
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDD-FGSCF-- 141 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~-~~~~f-- 141 (380)
+|+++|||||--+..+...+ |.+++.-+|+..+-+.++-.-+.. .+..+ .++..
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~--------~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAE--------AGLPNVRPPLALD 84 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHh--------cCCcccCCCeEee
Confidence 69999999999888885544 779999899877655554332211 00000 01111
Q ss_pred ------eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHH
Q 044727 142 ------IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDF 215 (380)
Q Consensus 142 ------~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~ 215 (380)
..+.|.. ++..++|.+++.+.+|-. |-.. +
T Consensus 85 v~~~~w~~~~~~~-----~~~~~~D~i~~~N~lHI~---p~~~------------------------~------------ 120 (204)
T PF06080_consen 85 VSAPPWPWELPAP-----LSPESFDAIFCINMLHIS---PWSA------------------------V------------ 120 (204)
T ss_pred cCCCCCccccccc-----cCCCCcceeeehhHHHhc---CHHH------------------------H------------
Confidence 1111111 267899999999999983 2221 1
Q ss_pred HHHHHHHHHHhccCceEEEEeccCC---Cc--chhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhc
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGND---KY--HTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIERE 290 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~~---~~--~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~ 290 (380)
..+++.=++.|+|||.|++--+=.. .+ +..-|| ..|+ .-+.-|-.|..+++.++-+..
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD---~sLr--------------~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFD---ASLR--------------SRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHH---HHHh--------------cCCCCcCccCHHHHHHHHHHC
Confidence 1235556899999999887654221 11 212333 2233 124447779999999999999
Q ss_pred CceeEeE
Q 044727 291 GSFNIHQ 297 (380)
Q Consensus 291 GsF~I~~ 297 (380)
| +++..
T Consensus 184 G-L~l~~ 189 (204)
T PF06080_consen 184 G-LELEE 189 (204)
T ss_pred C-CccCc
Confidence 9 55443
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.62 E-value=0.0031 Score=51.92 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=62.5
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhh-hhccCcchHHHhhhhcCCCCCCccee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNT-VSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~-lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
.+|+|+|||+|..++.+.... ..+++..|+ |.+.. +.+. ... ..+ ...+..++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~----------------~~~~~gvdi--~~~~~~~a~~------~~~-~~~-~~~~~~~~ 55 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG----------------AARVTGVDI--DPEAVELARR------NLP-RNG-LDDRVEVI 55 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC----------------TCEEEEEES--SHHHHHHHHH------HCH-HCT-TTTTEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC----------------CCeEEEEEE--CHHHHHHHHH------HHH-Hcc-CCceEEEE
Confidence 589999999999888773331 378888888 32221 1110 000 111 00122332
Q ss_pred eccCCCcccCC--CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRL--FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLK 220 (380)
Q Consensus 143 ~~vpgSFy~~l--~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~ 220 (380)
. +++..-. ++++++|+++++ |+...... + .... .++...|++
T Consensus 56 ~---~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~~~----------~------~~~~--------~~~~~~~~~ 99 (117)
T PF13659_consen 56 V---GDARDLPEPLPDGKFDLIVTN---------PPYGPRSG----------D------KAAL--------RRLYSRFLE 99 (117)
T ss_dssp E---SHHHHHHHTCTTT-EEEEEE-----------STTSBTT--------------------G--------GCHHHHHHH
T ss_pred E---CchhhchhhccCceeEEEEEC---------CCCccccc----------c------chhh--------HHHHHHHHH
Confidence 2 5554444 788999999886 32221100 0 0000 115668899
Q ss_pred HHHHHhccCceEEEEec
Q 044727 221 FRSEELKTEGRMVLNFI 237 (380)
Q Consensus 221 ~Ra~eL~pgG~l~~~~~ 237 (380)
.-.+-|+|||.+++.+.
T Consensus 100 ~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 100 AAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHEEEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEEeC
Confidence 99999999999999864
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.62 E-value=0.0052 Score=64.59 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=66.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
+.+|+|+|||+|..++.+.... |..+|+..|+.. +.-.+.+ .... ..+.. .. +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~------~N~~-~~~l~--~~--v 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAK------SNAI-KYEVT--DR--I 191 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHH------HHHH-HcCCc--cc--e
Confidence 4689999999999998774332 558899999842 1111111 0000 11100 11 1
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHH-HHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYL-DQFEIDFTSFLKF 221 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~-~Q~~~D~~~FL~~ 221 (380)
.-+-|+++.. ++.+++|+++|.--....+..+....+. .+ | . |. .+.+. +.--..+..+++.
T Consensus 192 ~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v-----~~----~----E-P~--~AL~gg~dGl~~~~~il~~ 254 (506)
T PRK01544 192 QIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIET-----IN----Y----E-PS--IALFAEEDGLQAYFIIAEN 254 (506)
T ss_pred eeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchh-----hc----c----C-cH--HHhcCCccHHHHHHHHHHH
Confidence 1244776553 4667899999963222222211110000 00 0 0 00 00000 0011345567777
Q ss_pred HHHHhccCceEEEEe
Q 044727 222 RSEELKTEGRMVLNF 236 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~ 236 (380)
-.+.|+|||++++..
T Consensus 255 a~~~L~~gG~l~lEi 269 (506)
T PRK01544 255 AKQFLKPNGKIILEI 269 (506)
T ss_pred HHHhccCCCEEEEEE
Confidence 788999999999874
No 110
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.59 E-value=0.0039 Score=60.70 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHHHhccCceEEEEeccC
Q 044727 218 FLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
++..-.+.|+|||+++++.+..
T Consensus 241 ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeCcH
Confidence 3555578899999999987654
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.50 E-value=0.0085 Score=61.77 Aligned_cols=130 Identities=9% Similarity=-0.007 Sum_probs=74.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|.-|+.+.... .+..+|+..|+-. +.| ....+.++ ..| ..++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~---~rl----~~~~~n~~-r~g---~~~v-- 290 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISR---EKI----QLVEKHAK-RLK---LSSI-- 290 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCH---HHH----HHHHHHHH-HcC---CCeE--
Confidence 3689999999999999884332 1347899999843 111 11111111 112 1121
Q ss_pred eccCCCcccCC-CCCCccceEEc---ccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRL-FPPCFLNLVYS---SFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 143 ~~vpgSFy~~l-~p~~svdl~~S---s~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
..+-++...-. +.++++|.|+. .+.+..+.+.|...... +++ -.....+.-...
T Consensus 291 ~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~------------------~~~----~~~~l~~~Q~~i 348 (431)
T PRK14903 291 EIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRV------------------NKE----DFKKLSEIQLRI 348 (431)
T ss_pred EEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhC------------------CHH----HHHHHHHHHHHH
Confidence 11223432111 23567899874 34555556555542210 122 123445556778
Q ss_pred HHHHHHHhccCceEEEEeccCCC
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDK 241 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~ 241 (380)
|..-++-|+|||.|+.++....+
T Consensus 349 L~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 349 VSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHhcCCCCEEEEEECCCCh
Confidence 99999999999999999987653
No 112
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.45 E-value=0.0079 Score=59.90 Aligned_cols=48 Identities=27% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCCC--CccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 044727 153 LFPP--CFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEG 230 (380)
Q Consensus 153 l~p~--~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG 230 (380)
.+++ ..+|+|-+-+|||..=. ++ +-.+.||+.-++.|+|||
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fe--------------------------se-----------~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFE--------------------------SE-----------EKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGS--------------------------SH-----------HHHHHHHHHHHHTEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcC--------------------------CH-----------HHHHHHHHHHHHhcCCCC
Confidence 3444 49999999999999322 11 234678999999999999
Q ss_pred eEEEEec
Q 044727 231 RMVLNFI 237 (380)
Q Consensus 231 ~l~~~~~ 237 (380)
.++.+++
T Consensus 181 ~FIgT~~ 187 (331)
T PF03291_consen 181 YFIGTTP 187 (331)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999997
No 113
>PRK00811 spermidine synthase; Provisional
Probab=96.43 E-value=0.021 Score=55.61 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=17.3
Q ss_pred CCceEEEeecCCCCccchHH
Q 044727 61 PDCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~ 80 (380)
+++.+|+|+|||+|..+..+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~ 94 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREV 94 (283)
T ss_pred CCCCEEEEEecCchHHHHHH
Confidence 56789999999999987766
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.0077 Score=58.87 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=66.0
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCc-cee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGS-CFI 142 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~f~ 142 (380)
.+|||+|||-|..++.+.+. + |..++.+.|. |+-.|=.+=.. + ..++ ..+ ..
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~--------~-------p~~~vtmvDv---n~~Av~~ar~N----l-~~N~---~~~~~v- 212 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKK--------S-------PQAKLTLVDV---NARAVESARKN----L-AANG---VENTEV- 212 (300)
T ss_pred CcEEEeCCCccHHHHHHHHh--------C-------CCCeEEEEec---CHHHHHHHHHh----H-HHcC---CCccEE-
Confidence 49999999999999877322 2 7899999997 32222111000 1 1121 122 22
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+-.+-|+.+.. ++|+|+|+ |+.-.. +- + ...+. ..++..=
T Consensus 213 --~~s~~~~~v~~--kfd~IisN---------PPfh~G----------~~----v--~~~~~-----------~~~i~~A 252 (300)
T COG2813 213 --WASNLYEPVEG--KFDLIISN---------PPFHAG----------KA----V--VHSLA-----------QEIIAAA 252 (300)
T ss_pred --EEecccccccc--cccEEEeC---------CCccCC----------cc----h--hHHHH-----------HHHHHHH
Confidence 23566677766 89999885 554322 10 0 11111 1345556
Q ss_pred HHHhccCceEEEEeccCCCc
Q 044727 223 SEELKTEGRMVLNFIGNDKY 242 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~ 242 (380)
++.|++||.|.+..-|..++
T Consensus 253 ~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 253 ARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred HHhhccCCEEEEEEcCCCCh
Confidence 88999999999988754444
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.35 E-value=0.019 Score=59.39 Aligned_cols=128 Identities=11% Similarity=-0.035 Sum_probs=71.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..|+.+...+ . ...+|+..|+-..= +.......+ ..| ..+ +
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~----~----------~~~~V~avD~s~~~-------l~~~~~~~~-~~g---~~~--v 303 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM----Q----------NRGQITAVDRYPQK-------LEKIRSHAS-ALG---ITI--I 303 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh----C----------CCcEEEEEECCHHH-------HHHHHHHHH-HhC---CCe--E
Confidence 3689999999999998774432 0 23588999984311 111111111 112 112 2
Q ss_pred eccCCCcccCCCCCCccceEEc----ccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYS----SFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSF 218 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~S----s~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~F 218 (380)
..+-++. ..+.|++++|.++. +..-+|- +-|..... . .++.. .+..+.-..+
T Consensus 304 ~~~~~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~----------------~--~~~~~----~~l~~~q~~i 359 (445)
T PRK14904 304 ETIEGDA-RSFSPEEQPDAILLDAPCTGTGVLG-RRAELRWK----------------L--TPEKL----AELVGLQAEL 359 (445)
T ss_pred EEEeCcc-cccccCCCCCEEEEcCCCCCcchhh-cCcchhhc----------------C--CHHHH----HHHHHHHHHH
Confidence 2234555 33447788999873 2222222 22222110 0 12121 2334456678
Q ss_pred HHHHHHHhccCceEEEEeccCCC
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDK 241 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~ 241 (380)
|..=++-|+|||+|+.++..-.+
T Consensus 360 L~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999999999999999987653
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.28 E-value=0.014 Score=60.19 Aligned_cols=128 Identities=15% Similarity=0.045 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|.-|+.+...+ .+..+|+..|+-.+ . +.......+ ..| ..+ +
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~---~----l~~~~~n~~-~~g---~~~--v 303 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEH---K----LKLIEENAK-RLG---LTN--I 303 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHH---H----HHHHHHHHH-HcC---CCe--E
Confidence 3689999999999999874432 03468888898431 1 111111111 111 112 2
Q ss_pred eccCCCcccC--CCCCCccceEEcc---cccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGR--LFPPCFLNLVYSS---FCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 143 ~~vpgSFy~~--l~p~~svdl~~Ss---~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
..+-+++..- .++ +++|++++- +....+.+.|.... .+ .+... ....+--..
T Consensus 304 ~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~--------~~----------~~~~~----~~l~~~q~~ 360 (444)
T PRK14902 304 ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKY--------NK----------TKEDI----ESLQEIQLE 360 (444)
T ss_pred EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhh--------cC----------CHHHH----HHHHHHHHH
Confidence 2234555332 133 789999863 23333333333211 10 11111 122333356
Q ss_pred HHHHHHHHhccCceEEEEeccCC
Q 044727 218 FLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+|+.=.+.|+|||+|+.++..-.
T Consensus 361 iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 361 ILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred HHHHHHHHcCCCCEEEEEcCCCC
Confidence 78888899999999998876443
No 117
>PRK14968 putative methyltransferase; Provisional
Probab=96.25 E-value=0.079 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCceEEEEec
Q 044727 214 DFTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 214 D~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
.+..|++.-.+.|+|||.+++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 456788999999999999988763
No 118
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.15 E-value=0.016 Score=53.05 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=25.6
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
...+|+|+|||+|..++.+.... .+..+|+.-|.-
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~ 74 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKD 74 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECC
Confidence 34799999999999888763221 134688888883
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.02 E-value=0.034 Score=53.16 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=25.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
+.+|+|+|||+|..++.+.... |..+|+..|.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---------------~~~~v~~vDi 118 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---------------DGIELHAADI 118 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---------------CCCEEEEEEC
Confidence 4689999999999998874332 4468888887
No 120
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.90 E-value=0.15 Score=49.88 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=40.4
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCccc--CCHHHHHHHHHhcCcee
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYN--PCVEEVRQVIEREGSFN 294 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~--ps~eE~~~~ie~~GsF~ 294 (380)
|+--+..|.|||.|+.+. .+ -. +-.+.++.+|...- + -.||.+ ||.+|..++++..| |+
T Consensus 232 l~gl~~al~pgG~lIyTg--QP-wH-PQle~IAr~LtsHr-~-----------g~~WvMRrRsq~EmD~Lv~~aG-F~ 292 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTG--QP-WH-PQLEMIARVLTSHR-D-----------GKAWVMRRRSQAEMDQLVEAAG-FE 292 (311)
T ss_pred HHHHHHHhCCCcEEEEcC--CC-CC-cchHHHHHHHhccc-C-----------CCceEEEecCHHHHHHHHHHcC-Cc
Confidence 666689999999988764 22 11 23456666665321 1 236776 69999999999999 66
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.87 E-value=0.049 Score=56.12 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhccCceEEEEeccCC
Q 044727 211 FEIDFTSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 211 ~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+.+.-..+|..=++-|||||+|+.++..-.
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 344557789999999999999998886544
No 122
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.78 E-value=0.065 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCceEEEEeccC
Q 044727 215 FTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 215 ~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
...+|+.-++.|+|||++++.+...
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCC
Confidence 4557777789999999999988654
No 123
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.75 E-value=0.009 Score=57.82 Aligned_cols=131 Identities=18% Similarity=0.145 Sum_probs=83.6
Q ss_pred hHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecC
Q 044727 29 SYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLND 108 (380)
Q Consensus 29 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nD 108 (380)
-|++.+..=...-.+.+|.+.+.+... +....++|.|||-|.-+.. . |-..++..|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~------------------~-p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGV------------------N-PLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcC------------------C-Ccceeeecc
Confidence 466666653344445667777766633 3358899999999864321 2 447778888
Q ss_pred CCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCC
Q 044727 109 LPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLN 188 (380)
Q Consensus 109 Lp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~n 188 (380)
+-. .++.. .+ ..+ . ...++ .+.-..++++.|+|...|...+||||.--.
T Consensus 73 ~c~-------~l~~~----ak-~~~-~-~~~~~-----ad~l~~p~~~~s~d~~lsiavihhlsT~~R------------ 121 (293)
T KOG1331|consen 73 LCT-------GLLGG----AK-RSG-G-DNVCR-----ADALKLPFREESFDAALSIAVIHHLSTRER------------ 121 (293)
T ss_pred hhh-------hhccc----cc-cCC-C-ceeeh-----hhhhcCCCCCCccccchhhhhhhhhhhHHH------------
Confidence 743 11111 11 111 0 01223 455678889999999999999999876422
Q ss_pred CccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCC
Q 044727 189 KRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 189 kg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+..+ |+.-.++|+|||.+.+..-+..
T Consensus 122 -----------R~~~---------------l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 122 -----------RERA---------------LEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred -----------HHHH---------------HHHHHHHhcCCCceEEEEehhh
Confidence 1112 5555899999999999888765
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.06 Score=52.39 Aligned_cols=124 Identities=17% Similarity=0.126 Sum_probs=68.3
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhh-hhcCCCCCCc-cee
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLK-TERGHDDFGS-CFI 142 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~-~~~~~~~~~~-~f~ 142 (380)
+|+|+|||||..++.+.... |...|+..|+.. ..+. -.+ +... .+..+ .++
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~----------~Al~-~A~~Na~~-~~l~~~~~~ 165 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP----------DALA-LARENAER-NGLVRVLVV 165 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH----------HHHH-HHHHHHHH-cCCccEEEE
Confidence 89999999999998883332 568999999942 1111 011 1100 11112 222
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHH-HHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQ-FEIDFTSFLKF 221 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q-~~~D~~~FL~~ 221 (380)
. ++.+..+-. .+|+++|+ |+.+..+. +...++-+. - .| ....+..- --....+|+..
T Consensus 166 --~-~dlf~~~~~--~fDlIVsN---------PPYip~~~--~~~~~~~~~---~--EP-~~Al~~g~dGl~~~~~i~~~ 223 (280)
T COG2890 166 --Q-SDLFEPLRG--KFDLIVSN---------PPYIPAED--PELLPEVVR---Y--EP-LLALVGGGDGLEVYRRILGE 223 (280)
T ss_pred --e-eecccccCC--ceeEEEeC---------CCCCCCcc--cccChhhhc---c--CH-HHHHccCccHHHHHHHHHHh
Confidence 2 366666655 89999985 77776530 111110000 0 01 01111111 12356677888
Q ss_pred HHHHhccCceEEEEec
Q 044727 222 RSEELKTEGRMVLNFI 237 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~ 237 (380)
=.+.|+|||.+++...
T Consensus 224 a~~~l~~~g~l~le~g 239 (280)
T COG2890 224 APDILKPGGVLILEIG 239 (280)
T ss_pred hHHHcCCCcEEEEEEC
Confidence 8888999998888774
No 125
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.53 E-value=0.084 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccCceEEEEec
Q 044727 215 FTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 215 ~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
+..+|+.-.+.|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 45567777888999999999975
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.44 E-value=0.032 Score=58.68 Aligned_cols=138 Identities=18% Similarity=0.149 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCch
Q 044727 35 APSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDF 114 (380)
Q Consensus 35 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDF 114 (380)
..|++.++...|.+.-....+.. .+.-.++|+|||.|..++.+... .|+..++.-|.-.
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~~~--- 381 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEVYL--- 381 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEeeH---
Confidence 37888888888777644333321 23468999999999988877222 2778888888743
Q ss_pred hhhhccCcchHHHhhhhcCCCCCCcceeeccCCCc--ccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccE
Q 044727 115 NTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSF--HGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDV 192 (380)
Q Consensus 115 n~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSF--y~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i 192 (380)
+.+-+.+.. .. . ....|+.+ +++++ ....||++|||-++-.+.=-| |+.-- .|.++
T Consensus 382 ~~~~~~~~~----~~-~---~~l~N~~~--~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkrh--------~krRl 439 (506)
T PRK01544 382 NGVANVLKL----AG-E---QNITNFLL--FPNNLDLILNDLPNNSLDGIYILFPDPW----IKNKQ--------KKKRI 439 (506)
T ss_pred HHHHHHHHH----HH-H---cCCCeEEE--EcCCHHHHHHhcCcccccEEEEECCCCC----CCCCC--------ccccc
Confidence 122221111 11 1 12245443 33444 467789999999998876666 33210 12222
Q ss_pred EEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 044727 193 CVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 193 ~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
. .+ .||+.=++-|+|||.+.+.+
T Consensus 440 ~------~~---------------~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 440 F------NK---------------ERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred c------CH---------------HHHHHHHHhcCCCCEEEEEc
Confidence 1 12 35777799999999999887
No 127
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.44 E-value=0.046 Score=54.37 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=92.9
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
..-..+|.|-|.|..+-.+++. + |.+..+=-|+|. +-..-+.+ . ++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~--------f-------p~ik~infdlp~-----v~~~a~~~----------~-~g--- 222 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK--------Y-------PHIKGINFDLPF-----VLAAAPYL----------A-PG--- 222 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh--------C-------CCCceeecCHHH-----HHhhhhhh----------c-CC---
Confidence 4678999999999988877442 2 678888778764 11111110 0 01
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+-=+.|++++- .|..- ++|--|+||= ++| +|...||++
T Consensus 223 V~~v~gdmfq~-~P~~d--aI~mkWiLhd-------wtD--------------------------------edcvkiLkn 260 (342)
T KOG3178|consen 223 VEHVAGDMFQD-TPKGD--AIWMKWILHD-------WTD--------------------------------EDCVKILKN 260 (342)
T ss_pred cceeccccccc-CCCcC--eEEEEeeccc-------CCh--------------------------------HHHHHHHHH
Confidence 22266999999 88887 7776666654 222 488899999
Q ss_pred HHHHhccCceEEEEec-cC-C--C---cch--hHHHHHHHHHHHHHHc-cCcccccccccccCcccCCHHHHHHHHHhcC
Q 044727 222 RSEELKTEGRMVLNFI-GN-D--K---YHT--GVFELMGMVLNDMVYE-GLIEVSKLESFHFPMYNPCVEEVRQVIEREG 291 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~-g~-~--~---~~~--~~~~~l~~al~~mv~e-G~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~G 291 (380)
..+.|+|||.+++.=. -+ . . .+. ...+.+ +-...+ |+ .|+.+|++..+.++|
T Consensus 261 C~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l----m~~~~~~Gk--------------ert~~e~q~l~~~~g 322 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL----MLTQTSGGK--------------ERTLKEFQALLPEEG 322 (342)
T ss_pred HHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHH----HHHHhccce--------------eccHHHHHhcchhhc
Confidence 9999999999987633 22 1 1 111 223333 222222 32 368999999999999
Q ss_pred ceeEeEEEEE
Q 044727 292 SFNIHQLETS 301 (380)
Q Consensus 292 sF~I~~~e~~ 301 (380)
|.+-..-..
T Consensus 323 -F~~~~~~~~ 331 (342)
T KOG3178|consen 323 -FPVCMVALT 331 (342)
T ss_pred -CceeEEEec
Confidence 887655443
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.35 E-value=0.059 Score=51.77 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEeccCC
Q 044727 210 QFEIDFTSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 210 Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+..+.-..+|+.=.+-|+|||+|+.++....
T Consensus 173 ~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 173 EISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 3444556689999999999999999987655
No 129
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.34 E-value=0.12 Score=47.50 Aligned_cols=113 Identities=24% Similarity=0.411 Sum_probs=64.6
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCc-ceee
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGS-CFIA 143 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~f~~ 143 (380)
.++|+|||.|...+.+.. .. |+..++.-|.-. +.+.+.+.. ... .+ ..| .++.
T Consensus 20 l~lEIG~G~G~~l~~~A~--------~~-------Pd~n~iGiE~~~---~~v~~a~~~----~~~-~~---l~Nv~~~~ 73 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--------RN-------PDINFIGIEIRK---KRVAKALRK----AEK-RG---LKNVRFLR 73 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--------HS-------TTSEEEEEES-H---HHHHHHHHH----HHH-HT---TSSEEEEE
T ss_pred eEEEecCCCCHHHHHHHH--------HC-------CCCCEEEEecch---HHHHHHHHH----HHh-hc---ccceEEEE
Confidence 899999999998887722 22 789999988843 222222111 111 11 134 4444
Q ss_pred ccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 144 ~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
+=...+...++|++||+-++=.+-=-| |+.-- .|.++ . .+ .||..-+
T Consensus 74 ~da~~~l~~~~~~~~v~~i~i~FPDPW----pK~rH--------~krRl----~--~~---------------~fl~~~~ 120 (195)
T PF02390_consen 74 GDARELLRRLFPPGSVDRIYINFPDPW----PKKRH--------HKRRL----V--NP---------------EFLELLA 120 (195)
T ss_dssp S-CTTHHHHHSTTTSEEEEEEES---------SGGG--------GGGST----T--SH---------------HHHHHHH
T ss_pred ccHHHHHhhcccCCchheEEEeCCCCC----cccch--------hhhhc----C--Cc---------------hHHHHHH
Confidence 344555678899999998887665545 22100 11111 1 22 3577789
Q ss_pred HHhccCceEEEEe
Q 044727 224 EELKTEGRMVLNF 236 (380)
Q Consensus 224 ~eL~pgG~l~~~~ 236 (380)
+.|+|||.+.+.+
T Consensus 121 ~~L~~gG~l~~~T 133 (195)
T PF02390_consen 121 RVLKPGGELYFAT 133 (195)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHcCCCCEEEEEe
Confidence 9999999998887
No 130
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.24 E-value=0.058 Score=51.29 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.1
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
...+|+|+|||+|..++.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCCEEEEeCCcHHHHHHHH
Confidence 3579999999999766544
No 131
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.13 E-value=0.24 Score=46.47 Aligned_cols=164 Identities=23% Similarity=0.241 Sum_probs=89.8
Q ss_pred HhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCc
Q 044727 43 KTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLP 122 (380)
Q Consensus 43 ~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~ 122 (380)
...|.|.+.+..+.. +..-+|++-|||.|...+.+. ++ -.+|+..|+...=-...|+...
T Consensus 21 ~~~p~L~~~~~~l~~---~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~ 80 (218)
T PF05724_consen 21 EPNPALVEYLDSLAL---KPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENN 80 (218)
T ss_dssp TSTHHHHHHHHHHTT---STSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCT
T ss_pred CCCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhc
Confidence 345666666665321 335799999999999987772 21 2788888886411111111100
Q ss_pred chHHHhhhhcCCCCCCcc------eeeccCCCcccCCCCC--CccceEEcccccccccCCCccccccCCCCCCCCccEEE
Q 044727 123 SFYERLKTERGHDDFGSC------FIAAAPGSFHGRLFPP--CFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCV 194 (380)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~------f~~~vpgSFy~~l~p~--~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~ 194 (380)
. .... ...... -+.-+-|+||.-- |. +++|+++=-.+|+= +|
T Consensus 81 ~------~~~~-~~~~~~~~~~~~~i~~~~gDfF~l~-~~~~g~fD~iyDr~~l~A---lp------------------- 130 (218)
T PF05724_consen 81 L------EPTV-TSVGGFKRYQAGRITIYCGDFFELP-PEDVGKFDLIYDRTFLCA---LP------------------- 130 (218)
T ss_dssp T------EEEC-TTCTTEEEETTSSEEEEES-TTTGG-GSCHHSEEEEEECSSTTT---S--------------------
T ss_pred c------CCCc-ccccceeeecCCceEEEEcccccCC-hhhcCCceEEEEeccccc---CC-------------------
Confidence 0 0000 000000 1122458888722 22 25788888777764 33
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccC
Q 044727 195 AKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFP 274 (380)
Q Consensus 195 ~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 274 (380)
|+.++.|.+| -++-|+|||.+++.++-.... ...-|
T Consensus 131 ------p~~R~~Ya~~-----------l~~ll~p~g~~lLi~l~~~~~---------------------------~~~GP 166 (218)
T PF05724_consen 131 ------PEMRERYAQQ-----------LASLLKPGGRGLLITLEYPQG---------------------------EMEGP 166 (218)
T ss_dssp ------GGGHHHHHHH-----------HHHCEEEEEEEEEEEEES-CS---------------------------CSSSS
T ss_pred ------HHHHHHHHHH-----------HHHHhCCCCcEEEEEEEcCCc---------------------------CCCCc
Confidence 3355666664 377899999965555421100 12246
Q ss_pred cccCCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 275 MYNPCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 275 ~Y~ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
=|.-+.+||++++. .+ |+|+.++..+
T Consensus 167 Pf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 167 PFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp S----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred CCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 66678999999998 44 9999999854
No 132
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.08 E-value=0.021 Score=56.68 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=67.6
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
+.-+|+|.|||||..|+..... | + ..|+.-|- +.+. .....+...++ +..+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA------------G---A-~~V~aVe~-----S~ia----~~a~~iv~~N~---~~~i- 110 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA------------G---A-RKVYAVEA-----SSIA----DFARKIVKDNG---LEDV- 110 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh------------C---c-ceEEEEec-----hHHH----HHHHHHHHhcC---ccce-
Confidence 3479999999999988876222 1 2 44444332 2222 22222333333 1222
Q ss_pred eeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 142 IAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 142 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
+--+.|.-.+-.+|-..||+++|-|.=+||-.- . =+...|-+
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~E-s-------------------------------------MldsVl~A 152 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYE-S-------------------------------------MLDSVLYA 152 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHHh-h-------------------------------------hhhhhhhh
Confidence 333778888888899999999999988886431 1 12233889
Q ss_pred HHHHhccCceEE
Q 044727 222 RSEELKTEGRMV 233 (380)
Q Consensus 222 Ra~eL~pgG~l~ 233 (380)
|-+.|+|||.++
T Consensus 153 RdkwL~~~G~i~ 164 (346)
T KOG1499|consen 153 RDKWLKEGGLIY 164 (346)
T ss_pred hhhccCCCceEc
Confidence 999999999886
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.85 E-value=0.1 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 044727 217 SFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~ 236 (380)
.|++.-++-|+|||.+++..
T Consensus 167 ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcC
Confidence 45777789999999999883
No 134
>PRK04457 spermidine synthase; Provisional
Probab=94.85 E-value=0.089 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccCceEEEEeccCC
Q 044727 217 SFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
.|++.-.+.|+|||++++...++.
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 567788889999999999887664
No 135
>PLN02366 spermidine synthase
Probab=94.47 E-value=0.37 Score=47.56 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.1
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 044727 217 SFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~ 236 (380)
.|++.-.+.|+|||.++...
T Consensus 187 ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 187 PFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHHHHHhcCCCcEEEECc
Confidence 45777788999999998754
No 136
>PRK03612 spermidine synthase; Provisional
Probab=94.35 E-value=0.29 Score=51.76 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHH
Q 044727 218 FLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIE 288 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie 288 (380)
|++.-.+.|+|||.++++...+... -+.+.++.+.|.+.|. .-. .-..++|.| .+..-.+-
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf-~v~-~~~~~vps~----g~w~f~~a 457 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGL-ATT-PYHVNVPSF----GEWGFVLA 457 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCC-EEE-EEEeCCCCc----chhHHHee
Confidence 4666678899999999886433211 1233444555555565 221 122345666 35554444
No 137
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.19 E-value=0.27 Score=47.66 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=71.4
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccC-cchHHHhhhhcCCCCCCcce
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSL-PSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-~~~~~~~~~~~~~~~~~~~f 141 (380)
.-.|+|+|||+|.-|+.++..+ |+..|...|+.. -.-.| ..+-+++.- . +.+-
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------------~~~~v~AiD~S~-----~Ai~La~eN~qr~~l----~--g~i~ 202 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------------PQCTVTAIDVSK-----AAIKLAKENAQRLKL----S--GRIE 202 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------------CCceEEEEeccH-----HHHHHHHHHHHHHhh----c--CceE
Confidence 4479999999999999886655 345666666532 00000 000011100 0 0111
Q ss_pred ee--ccCCCcccCC-CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHH-------
Q 044727 142 IA--AAPGSFHGRL-FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQF------- 211 (380)
Q Consensus 142 ~~--~vpgSFy~~l-~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~------- 211 (380)
+. -.-++-|... .+.+.+|+++|+ |+.+.+.. |.+ + .|+| ..|..-.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsN---------PPYI~~dD-----~~~-l-------~~eV-~~yEp~lALdGg~e 259 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSN---------PPYIRKDD-----NRQ-L-------KPEV-RLYEPKLALDGGLE 259 (328)
T ss_pred EEecccccccccccccccCceeEEecC---------CCcccccc-----hhh-c-------Cchh-eecCchhhhccccc
Confidence 11 0123333333 788899999885 66654421 110 0 1112 1122111
Q ss_pred -HHHHHHHHHHHHHHhccCceEEEEeccCCCcc
Q 044727 212 -EIDFTSFLKFRSEELKTEGRMVLNFIGNDKYH 243 (380)
Q Consensus 212 -~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~ 243 (380)
-.-+.+|+..-.+-|+|||.+.+.+.++...+
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~ 292 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELVERKEHS 292 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEecccccCc
Confidence 12356778888999999999999999886433
No 138
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.15 Score=47.61 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
...+|+|+|||+|.+|..+
T Consensus 72 ~g~~VLEIGtGsGY~aAvl 90 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVL 90 (209)
T ss_pred CCCeEEEECCCchHHHHHH
Confidence 3589999999999999877
No 139
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.86 E-value=0.13 Score=51.01 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCccchHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~ 81 (380)
..+|+|+|||+|.+++.+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCEEEEEeCCccHHHHHHH
Confidence 4799999999999998873
No 140
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.68 E-value=0.08 Score=54.94 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=58.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|+.+...++..- +. + -..+||.-.- |.-.... + .... +. +.|... |
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~----~~----~---~a~~VyAVEk--n~~A~~~--l---~~~v-~~---n~w~~~-V 243 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGA----RA----G---GAVKVYAVEK--NPNAVVT--L---QKRV-NA---NGWGDK-V 243 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTH----HH----C---CESEEEEEES--STHHHHH--H---HHHH-HH---TTTTTT-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHH----Hh----C---CCeEEEEEcC--CHhHHHH--H---HHHH-Hh---cCCCCe-E
Confidence 58999999999999987755541 11 1 1367776554 2210000 0 0000 11 223222 3
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
--+.|+. +.+-++..+|+++|= ||=. +-+ |. ..|++ |.+|
T Consensus 244 ~vi~~d~-r~v~lpekvDIIVSE----lLGs----fg~-------nE---------l~pE~---------------Lda~ 283 (448)
T PF05185_consen 244 TVIHGDM-REVELPEKVDIIVSE----LLGS----FGD-------NE---------LSPEC---------------LDAA 283 (448)
T ss_dssp EEEES-T-TTSCHSS-EEEEEE-------BT----TBT-------TT---------SHHHH---------------HHHG
T ss_pred EEEeCcc-cCCCCCCceeEEEEe----ccCC----ccc-------cc---------cCHHH---------------HHHH
Confidence 3366777 777788899999984 3321 222 11 14556 8889
Q ss_pred HHHhccCceEE
Q 044727 223 SEELKTEGRMV 233 (380)
Q Consensus 223 a~eL~pgG~l~ 233 (380)
.+-|+|||.++
T Consensus 284 ~rfLkp~Gi~I 294 (448)
T PF05185_consen 284 DRFLKPDGIMI 294 (448)
T ss_dssp GGGEEEEEEEE
T ss_pred HhhcCCCCEEe
Confidence 99999999876
No 141
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=93.66 E-value=0.26 Score=46.54 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcc
Q 044727 44 TKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPS 123 (380)
Q Consensus 44 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~ 123 (380)
.-|.|.+.+..+.. ++..+|++.|||.|.+...+.++ -.+|+..|+...=-...|+...-
T Consensus 28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA~~-----------------G~~V~GvDlS~~Ai~~~~~e~~~ 87 (226)
T PRK13256 28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFLSK-----------------GVKVIGIELSEKAVLSFFSQNTI 87 (226)
T ss_pred CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHHhC-----------------CCcEEEEecCHHHHHHHHHHcCC
Confidence 34555554444322 23479999999999999988321 36788888864222222222110
Q ss_pred hHHHhh-----hhcCCCCCCcceeeccCCCcccCCCC---CCccceEEcccccccccCCCccccccCCCCCCCCccEEEc
Q 044727 124 FYERLK-----TERGHDDFGSCFIAAAPGSFHGRLFP---PCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVA 195 (380)
Q Consensus 124 ~~~~~~-----~~~~~~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~ 195 (380)
...... ...+ . .-.+ +-|+|++.-.+ -+.+|+|+=..+|+=|
T Consensus 88 ~~~~~~~~~~~~~~~-~--~i~~---~~gD~f~l~~~~~~~~~fD~VyDra~~~Al------------------------ 137 (226)
T PRK13256 88 NYEVIHGNDYKLYKG-D--DIEI---YVADIFNLPKIANNLPVFDIWYDRGAYIAL------------------------ 137 (226)
T ss_pred Ccceecccccceecc-C--ceEE---EEccCcCCCccccccCCcCeeeeehhHhcC------------------------
Confidence 000000 0000 0 1123 34788764321 2467777766666542
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCc
Q 044727 196 KTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPM 275 (380)
Q Consensus 196 ~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~ 275 (380)
||+.+..|.++ -++-|+|||.+++.++-.+.. ..-|-
T Consensus 138 ----pp~~R~~Y~~~-----------l~~lL~pgg~llll~~~~~~~----------------------------~~GPP 174 (226)
T PRK13256 138 ----PNDLRTNYAKM-----------MLEVCSNNTQILLLVMEHDKK----------------------------SQTPP 174 (226)
T ss_pred ----CHHHHHHHHHH-----------HHHHhCCCcEEEEEEEecCCC----------------------------CCCCC
Confidence 34455555553 467799999999988622100 12344
Q ss_pred ccCCHHHHHHHHHhcCceeEeEEEE
Q 044727 276 YNPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 276 Y~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
+.-+.+|+++.+... |+|+.++.
T Consensus 175 f~v~~~e~~~lf~~~--~~i~~l~~ 197 (226)
T PRK13256 175 YSVTQAELIKNFSAK--IKFELIDS 197 (226)
T ss_pred CcCCHHHHHHhccCC--ceEEEeee
Confidence 555678999988633 67766653
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=93.36 E-value=0.17 Score=48.09 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=25.7
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
..+|+|+|||+|..++.+...+. ..+..+|+.-|+-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~------------~~~~~~V~aVEID 85 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM------------YAKPREIVCVELN 85 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc------------cCCCcEEEEEECC
Confidence 47999999999998887744331 0124678888873
No 143
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.19 E-value=0.76 Score=41.08 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=28.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGN 112 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 112 (380)
+..+|+|+|||.|.-|..+++.. .+.-.|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 56999999999999998774433 14588999999754
No 144
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.04 E-value=0.32 Score=45.55 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=83.8
Q ss_pred eccCCCCCcchHHHhcHHHHHHHHH---hhHHHHHHHHhhhccC--CCCceEEEeecCCCCccchHHHHHHHHHHHHHhh
Q 044727 19 LFMNGGEGDNSYANNSAPSREATLK---TKPLLHESLFDLYCNG--FPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICS 93 (380)
Q Consensus 19 l~M~gG~g~~sY~~nS~~Q~~~~~~---~~~~l~~ai~~~~~~~--~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~ 93 (380)
+...|| -.+|-..|.. -....+ .--+|-+.+.+..... ...+++++|+||=+..|.+.-
T Consensus 6 i~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~------------- 69 (219)
T PF11968_consen 6 IEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST------------- 69 (219)
T ss_pred HHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-------------
Confidence 445565 5677666554 222222 2233333344333222 224599999999887776543
Q ss_pred hcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceeeccCCCcccCCCC---CCccceEEccccccc
Q 044727 94 RLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIAAAPGSFHGRLFP---PCFLNLVYSSFCLHW 170 (380)
Q Consensus 94 ~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhW 170 (380)
.+-+.|.--||-+.+ +.+. --+|.++..| ++++|+|..|.-|.+
T Consensus 70 -----~~~fdvt~IDLns~~------------------------~~I~----qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 70 -----SGWFDVTRIDLNSQH------------------------PGIL----QQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred -----cCceeeEEeecCCCC------------------------CCce----eeccccCCCCCCcccceeEEEEEEEEee
Confidence 134778888983300 1122 1478888886 789999999999988
Q ss_pred ccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCce-----EEEEeccCC
Q 044727 171 LSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGR-----MVLNFIGND 240 (380)
Q Consensus 171 ls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~-----l~~~~~g~~ 240 (380)
||.... +-+. |++-.+-|+|+|. |++.++-+.
T Consensus 117 ---VP~p~~--------------------RG~M---------------l~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 117 ---VPDPKQ--------------------RGEM---------------LRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred ---CCCHHH--------------------HHHH---------------HHHHHHHhCCCCccCcceEEEEeCchH
Confidence 665411 1112 7777888999999 998887553
No 145
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.00 E-value=0.1 Score=48.68 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=14.8
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
-.+|+|+|||+|.+|..+
T Consensus 73 g~~VLeIGtGsGY~aAll 90 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALL 90 (209)
T ss_dssp T-EEEEES-TTSHHHHHH
T ss_pred CCEEEEecCCCcHHHHHH
Confidence 489999999999999988
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.88 E-value=0.2 Score=51.82 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
..+|+|+|||+|..|+.+
T Consensus 298 ~~~VLDlgcGtG~~sl~l 315 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPL 315 (443)
T ss_pred CCEEEEEeccCCHHHHHH
Confidence 369999999999988877
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.80 E-value=1.2 Score=42.06 Aligned_cols=171 Identities=24% Similarity=0.272 Sum_probs=86.9
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
-.++|+|||.|...+.+. ++ .|+.-++.-+.-.+= +-+.+. ... +.+ ..|+.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~~---v~~~l~----k~~-~~~---l~Nlri~ 103 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVPG---VAKALK----KIK-ELG---LKNLRLL 103 (227)
T ss_pred cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehHH---HHHHHH----HHH-HcC---CCcEEEE
Confidence 479999999998777662 22 266666666653311 111111 111 111 1132222
Q ss_pred cc-CCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AA-PGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 144 ~v-pgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
-. .-.+...++|++|+|=++=.+.=-| |+.-- +|.+|. .+ .||+.-
T Consensus 104 ~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH--------~KRRl~------~~---------------~fl~~~ 150 (227)
T COG0220 104 CGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRH--------HKRRLT------QP---------------EFLKLY 150 (227)
T ss_pred cCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccc--------cccccC------CH---------------HHHHHH
Confidence 11 1123366677779998887776666 33211 223331 12 358888
Q ss_pred HHHhccCceEEEEeccCCCcchhHHHH-HHHHHHHHHHccCcccccccccccCcc-cCCHHHHHHHHHhcCceeEeEEEE
Q 044727 223 SEELKTEGRMVLNFIGNDKYHTGVFEL-MGMVLNDMVYEGLIEVSKLESFHFPMY-NPCVEEVRQVIEREGSFNIHQLET 300 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~Y-~ps~eE~~~~ie~~GsF~I~~~e~ 300 (380)
++-|+|||.+.+.+ +. . ..++. +......--.....+.+ .+. +.|.. .+...||..-....| -.|..++.
T Consensus 151 a~~Lk~gG~l~~aT---D~-~-~y~e~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~T~yE~k~~~~g-~~i~~l~~ 222 (227)
T COG0220 151 ARKLKPGGVLHFAT---DN-E-EYFEWMMLEVLEHPPFLKFESED-LHY-NLPPPDNNPVTEYEQKFRRLG-HPVYDLEF 222 (227)
T ss_pred HHHccCCCEEEEEe---cC-H-HHHHHHHHHHHhcchhhhccccc-ccc-ccccccCCCCcHHHHHHHhCC-CceEEEEE
Confidence 99999999999987 21 1 22333 22222210001122221 111 23333 356678888888888 56666554
Q ss_pred E
Q 044727 301 S 301 (380)
Q Consensus 301 ~ 301 (380)
.
T Consensus 223 ~ 223 (227)
T COG0220 223 I 223 (227)
T ss_pred E
Confidence 3
No 148
>PLN02672 methionine S-methyltransferase
Probab=92.73 E-value=0.25 Score=56.32 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhccCceEEEEeccCC
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
.+++..-.+.|+|||+|++.+..+.
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccH
Confidence 5567777889999999999987654
No 149
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.67 E-value=0.61 Score=46.33 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=41.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcce
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCF 141 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 141 (380)
...+|+|+|||+|.=|..+++.+.. . . ..+..+--|+.. ..+......-.. ..++.+=
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~----~------~-~~~~Y~plDIS~----------~~L~~a~~~L~~-~~~p~l~ 133 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALER----Q------K-KSVDYYALDVSR----------SELQRTLAELPL-GNFSHVR 133 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHh----c------C-CCceEEEEECCH----------HHHHHHHHhhhh-ccCCCeE
Confidence 4568999999999999988777631 1 1 237888888854 222221111110 1235566
Q ss_pred eeccCCCcc
Q 044727 142 IAAAPGSFH 150 (380)
Q Consensus 142 ~~~vpgSFy 150 (380)
+.++.|+|.
T Consensus 134 v~~l~gdy~ 142 (319)
T TIGR03439 134 CAGLLGTYD 142 (319)
T ss_pred EEEEEecHH
Confidence 777788883
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.24 E-value=1.9 Score=44.04 Aligned_cols=28 Identities=7% Similarity=-0.035 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEec
Q 044727 210 QFEIDFTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 210 Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
...+++..++..-.+-|+|||.+++...
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3456777778888889999999987653
No 151
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=92.17 E-value=0.59 Score=46.61 Aligned_cols=147 Identities=17% Similarity=0.232 Sum_probs=79.6
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
--.|+|.|||+|..|+..++.= .-.||.-.-.. +....+.+...+. -.--+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEAS~---------MAqyA~~Lv~~N~----~~~rI 228 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEASE---------MAQYARKLVASNN----LADRI 228 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC----------------cceEEEEehhH---------HHHHHHHHHhcCC----ccceE
Confidence 4689999999999998773321 13344332211 1111111211110 12345
Q ss_pred eccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
..+||-. +.+-.+..+|+++|- |-.- -.+| ++=++.+|.+|
T Consensus 229 tVI~GKi-EdieLPEk~DviISE---------PMG~------mL~N-----------------------ERMLEsYl~Ar 269 (517)
T KOG1500|consen 229 TVIPGKI-EDIELPEKVDVIISE---------PMGY------MLVN-----------------------ERMLESYLHAR 269 (517)
T ss_pred EEccCcc-ccccCchhccEEEec---------cchh------hhhh-----------------------HHHHHHHHHHH
Confidence 5689998 566666778988762 3221 0111 24577889999
Q ss_pred HHHhccCceEEEEeccCC--Ccch-hH-HHHHH---------------HHHHHHHHccCcccccccccccCcccC
Q 044727 223 SEELKTEGRMVLNFIGND--KYHT-GV-FELMG---------------MVLNDMVYEGLIEVSKLESFHFPMYNP 278 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~--~~~~-~~-~~~l~---------------~al~~mv~eG~i~~e~~d~f~~P~Y~p 278 (380)
+-|+|.|.|+=++.--- |-+. .+ .+... ..|.--+-+|+..+--+|+|.+-+...
T Consensus 270 -k~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA 343 (517)
T KOG1500|consen 270 -KWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMA 343 (517)
T ss_pred -hhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeec
Confidence 99999999875543211 2111 01 11111 123333345677777788887776654
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.16 E-value=0.049 Score=52.57 Aligned_cols=54 Identities=13% Similarity=-0.092 Sum_probs=33.7
Q ss_pred eccCCCCCcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHH
Q 044727 19 LFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 19 l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 82 (380)
|.|.|=.-...|.+|-..+..++..+...+. .....+|+|+|||+|..|..+..
T Consensus 9 l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 9 LERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred HHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHH
Confidence 4444444455666766666665544333221 12346899999999999988844
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.95 E-value=0.19 Score=45.12 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPG 111 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~ 111 (380)
+..+|++||||+|--++.+... . ....|+++|++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE 79 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S-
T ss_pred CCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch
Confidence 4589999999999888877322 0 237899999853
No 154
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=1.6 Score=40.09 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcc
Q 044727 44 TKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPS 123 (380)
Q Consensus 44 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~ 123 (380)
+++.|++...++.. ..+.-++|+|||+|--|-.+.+.+. |.+..+..|+- -. .
T Consensus 28 LlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiN--p~--------A 80 (209)
T KOG3191|consen 28 LLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDIN--PE--------A 80 (209)
T ss_pred HHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCC--HH--------H
Confidence 56667777776643 2378899999999988877766552 44777788872 11 1
Q ss_pred hHHHhhhhcCCCCCCcceeeccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHH
Q 044727 124 FYERLKTERGHDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSV 203 (380)
Q Consensus 124 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~ 203 (380)
....+.+..- +.+-+--|-.|+..-|-+ +++|+..= .|+.+.+.. +.|- ....
T Consensus 81 ~~~Tl~TA~~----n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~-------~~i~------~~~i 133 (209)
T KOG3191|consen 81 LEATLETARC----NRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSD-------EEIG------DEGI 133 (209)
T ss_pred HHHHHHHHHh----cCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCc-------ccch------hHHH
Confidence 1111112111 112233345666666666 88887542 355544311 1110 1123
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhccCceEEEEeccCC
Q 044727 204 HKAYL--DQFEIDFTSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 204 ~~ay~--~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
..+|+ +--+.=..+||..=-.-|.|-|.+++.+.-++
T Consensus 134 ~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 134 ASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred HHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 33444 33333455666666667777887777776543
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.13 E-value=0.39 Score=47.56 Aligned_cols=114 Identities=20% Similarity=0.242 Sum_probs=65.5
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC---CCchhhhhccCcchHHHhhhhcCCCCCCcc
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP---GNDFNTVSKSLPSFYERLKTERGHDDFGSC 140 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp---~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 140 (380)
-.++|||||-|.-.+--- +. -.-+++..|.. .||--.-++.+... -+ + --+...
T Consensus 119 ~~~~~LgCGKGGDLlKw~--------kA--------gI~~~igiDIAevSI~qa~~RYrdm~~r---~~--~--~~f~a~ 175 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWD--------KA--------GIGEYIGIDIAEVSINQARKRYRDMKNR---FK--K--FIFTAV 175 (389)
T ss_pred cccceeccCCcccHhHhh--------hh--------cccceEeeehhhccHHHHHHHHHHHHhh---hh--c--ccceeE
Confidence 578899999999766541 11 12455555654 33333333321110 00 0 012334
Q ss_pred eeeccCCCcccCC-----CCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHH
Q 044727 141 FIAAAPGSFHGRL-----FPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDF 215 (380)
Q Consensus 141 f~~~vpgSFy~~l-----~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~ 215 (380)
|++ +-+|+++| +++-++|++=+=+|+|+. +.+ -+ -.
T Consensus 176 f~~--~Dc~~~~l~d~~e~~dp~fDivScQF~~HYa------Fet-------------------ee------------~a 216 (389)
T KOG1975|consen 176 FIA--ADCFKERLMDLLEFKDPRFDIVSCQFAFHYA------FET-------------------EE------------SA 216 (389)
T ss_pred EEE--eccchhHHHHhccCCCCCcceeeeeeeEeee------ecc-------------------HH------------HH
Confidence 444 34555443 255559999999999982 111 01 12
Q ss_pred HHHHHHHHHHhccCceEEEEeccC
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
..+|+.-++.|+|||.++-+++-.
T Consensus 217 r~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEecCcH
Confidence 345888899999999999988643
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=91.01 E-value=0.52 Score=47.67 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.6
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 044727 217 SFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~ 236 (380)
.|++.-.+-|+|||.|++.-
T Consensus 249 EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 249 ELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHHHHHhcCCCcEEEEec
Confidence 46777788999999998874
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=90.46 E-value=0.58 Score=41.50 Aligned_cols=71 Identities=10% Similarity=-0.033 Sum_probs=41.0
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|+|||+|..|..+++. ..+++.-|+-. ++ ...++.... . ..++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-----------------~~~v~~vE~~~-~~----------~~~~~~~~~-~-~~~v-- 61 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-----------------AARVTAIEIDP-RL----------APRLREKFA-A-ADNL-- 61 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-----------------CCeEEEEECCH-HH----------HHHHHHHhc-c-CCCE--
Confidence 368999999999999987432 14566667632 11 111111100 0 0111
Q ss_pred eccCCCcccCCCCCCccceEEcc
Q 044727 143 AAAPGSFHGRLFPPCFLNLVYSS 165 (380)
Q Consensus 143 ~~vpgSFy~~l~p~~svdl~~Ss 165 (380)
-.+-+++.+-.+++.++|.++|.
T Consensus 62 ~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 62 TVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred EEEECchhcCCccccCCCEEEEC
Confidence 12458887777777778888775
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=90.18 E-value=1.1 Score=42.96 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcC
Q 044727 213 IDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREG 291 (380)
Q Consensus 213 ~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~G 291 (380)
..+.+|++.-.+-|.|||+|++.=- -|+.-..+.+..-. -..|.--.+-.+|.+..++.+.+
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvEPQ--------pWksY~kaar~~e~---------~~~ny~~i~lkp~~f~~~l~q~~ 247 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVEPQ--------PWKSYKKAARRSEK---------LAANYFKIFLKPEDFEDWLNQIV 247 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEcCC--------chHHHHHHHHHHHH---------hhcCccceecCHHHHHhhhhhhh
Confidence 3688899999999999999998631 23333333332201 01233334557888888887653
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.67 E-value=1 Score=49.42 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEec
Q 044727 212 EIDFTSFLKFRSEELKTEGRMVLNFI 237 (380)
Q Consensus 212 ~~D~~~FL~~Ra~eL~pgG~l~~~~~ 237 (380)
.+|+...+..-.+-|+|||.++++..
T Consensus 632 ~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 632 QRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 45666677777889999999988764
No 160
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=87.41 E-value=4.6 Score=38.77 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=74.1
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
.+|+|.|.|||..|..+...+ + |+-+|+--|.-. ||-.+.+. .+. ..+..+ ...+..
T Consensus 96 ~rVlEAGtGSG~lt~~La~~v-------g-------~~G~v~tyE~r~-d~~k~A~~--Nl~-----~~~l~d-~v~~~~ 152 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAV-------G-------PEGHVTTYEIRE-DFAKTARE--NLS-----EFGLGD-RVTLKL 152 (256)
T ss_pred CEEEEcccCchHHHHHHHHhh-------C-------CCceEEEEEecH-HHHHHHHH--HHH-----Hhcccc-ceEEEe
Confidence 799999999999999884443 1 556777666532 44333221 110 001110 112211
Q ss_pred ccCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 144 ~vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
|+..+-.++. .+|.++= ++|. |.++ |..-+
T Consensus 153 ---~Dv~~~~~~~-~vDav~L--------Dmp~-----------------------PW~~---------------le~~~ 182 (256)
T COG2519 153 ---GDVREGIDEE-DVDAVFL--------DLPD-----------------------PWNV---------------LEHVS 182 (256)
T ss_pred ---cccccccccc-ccCEEEE--------cCCC-----------------------hHHH---------------HHHHH
Confidence 7777777777 7777651 3333 3334 77889
Q ss_pred HHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCccccccc
Q 044727 224 EELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLE 269 (380)
Q Consensus 224 ~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d 269 (380)
..|+|||.+++-.+ .++.+...+..|-+.|.++.+.++
T Consensus 183 ~~Lkpgg~~~~y~P--------~veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 183 DALKPGGVVVVYSP--------TVEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHhCCCcEEEEEcC--------CHHHHHHHHHHHHhcCccchhhhe
Confidence 99999999988774 344555555555555766665433
No 161
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=86.91 E-value=0.8 Score=39.57 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 42 LKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 42 ~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
.++..++...++... ....+.+|+|+|||.|+.|..+...+ ... .+..+|+.-|.
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~~l----~~~-------~~~~~v~~iD~ 61 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAHLL----CNS-------SPNLRVLGIDC 61 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHHHH----Hhc-------CCCCeEEEEEC
Confidence 445555555554321 12457999999999999999985522 110 14588888886
No 162
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=86.57 E-value=0.46 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.6
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
+..+|+|+|||||-.|+.. .+. | + ..++..|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa--------~kL----G---A-~~v~g~Di 193 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAA--------AKL----G---A-KKVVGVDI 193 (300)
T ss_pred CCCEEEEecCChhHHHHHH--------HHc----C---C-ceEEEecC
Confidence 5689999999999998877 222 2 2 66888887
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=86.49 E-value=0.67 Score=43.80 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=25.1
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPG 111 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~ 111 (380)
+..+|+|+|||||..|..+++. ..-+|+.-|.-.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----------------ga~~v~avD~~~ 108 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----------------GAKEVYGVDVGY 108 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----------------CCCEEEEEeCCH
Confidence 3468999999999999877322 125788888754
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.35 E-value=0.79 Score=45.14 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
+.+|+|+|||+|..++.+
T Consensus 174 ~~~VLDl~cG~G~~sl~l 191 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHC 191 (315)
T ss_pred CCEEEEccCCCCHHHHHH
Confidence 478999999999999877
No 165
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=84.74 E-value=4.1 Score=39.60 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=66.0
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCccee
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFI 142 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 142 (380)
..+|+|-.||+|..-+..+..+.+.-... ++.+++..|+ |........+....+... ...+-
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~--------~~~~i~G~ei--~~~~~~la~~nl~l~~~~--------~~~~~ 108 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKI--------KEINIYGIEI--DPEAVALAKLNLLLHGID--------NSNIN 108 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHH--------CCEEEEEEES---HHHHHHHHHHHHHTTHH--------CBGCE
T ss_pred cceeechhhhHHHHHHHHHHhhccccccc--------ccceeEeecC--cHHHHHHHHhhhhhhccc--------ccccc
Confidence 47899999999999888877664331111 5699999998 444433332222111111 11000
Q ss_pred eccCCCcc-cCCCC-CCccceEEcc--cccc-cccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHH
Q 044727 143 AAAPGSFH-GRLFP-PCFLNLVYSS--FCLH-WLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTS 217 (380)
Q Consensus 143 ~~vpgSFy-~~l~p-~~svdl~~Ss--~alh-Wls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~ 217 (380)
. ..++.+ ..... ...+|++++. +... | ....+... .-|.++ . ++.. ..|+ .
T Consensus 109 i-~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~---~~~~~~---~-----~~~~--------~~~~-~ 164 (311)
T PF02384_consen 109 I-IQGDSLENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD---ERFKKY---F-----PPKS--------NAEY-A 164 (311)
T ss_dssp E-EES-TTTSHSCTST--EEEEEEE--CTCES----STGGGCTT---CCCTTC---S-----SSTT--------EHHH-H
T ss_pred c-cccccccccccccccccccccCCCCcccccc---cccccccc---cccccc---C-----CCcc--------chhh-h
Confidence 1 223433 33333 5789998875 1111 3 01111100 111111 0 0100 1233 3
Q ss_pred HHHHHHHHhccCceEEEEecc
Q 044727 218 FLKFRSEELKTEGRMVLNFIG 238 (380)
Q Consensus 218 FL~~Ra~eL~pgG~l~~~~~g 238 (380)
|+..--+-|++||++++.++.
T Consensus 165 Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 165 FIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp HHHHHHHTEEEEEEEEEEEEH
T ss_pred hHHHHHhhcccccceeEEecc
Confidence 888888999999999998873
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=84.37 E-value=12 Score=36.26 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=27.5
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
++++|--.|||||-=.--+.-.+ .+.... ..+..++|+..|+-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l----~e~~~~--~~~~~~~I~AtDId 138 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLL----LEALGK--LAGFRVKILATDID 138 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHH----HHHhcc--ccCCceEEEEEECC
Confidence 58999999999996544332222 332211 12245999999984
No 167
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=84.31 E-value=0.77 Score=45.10 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=14.9
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
..+|+|+|||||-.++..
T Consensus 162 g~~vLDvG~GSGILaiaA 179 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAA 179 (295)
T ss_dssp TSEEEEES-TTSHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHH
Confidence 369999999999998877
No 168
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=84.12 E-value=4.4 Score=39.15 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=16.8
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
+..+++|+|.|+|.-|..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l 112 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERL 112 (265)
T ss_pred cCCceEEecCCCcHHHHHH
Confidence 4578999999999999877
No 169
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=84.11 E-value=1.5 Score=42.26 Aligned_cols=82 Identities=30% Similarity=0.430 Sum_probs=54.9
Q ss_pred CccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 044727 157 CFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 157 ~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
...|.+.|++||-=.++-++ .|.+ =|++-+.-|||||.|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~-----------------------------~y~~--------al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD-----------------------------EYRR--------ALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH-----------------------------HHHH--------HHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHH-----------------------------HHHH--------HHHHHHHHcCCCcEEEEEE
Confidence 35999999999876554322 2222 2777799999999999988
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEEE
Q 044727 237 IGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 299 (380)
Q Consensus 237 ~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~e 299 (380)
...... +. +..-.+|.+.-+.+.+++.|++.| |.|...+
T Consensus 200 ~l~~t~-------------------Y~----vG~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 200 VLGSTY-------------------YM----VGGHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp ESS-SE-------------------EE----ETTEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred EcCcee-------------------EE----ECCEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 754311 10 001247888889999999999999 9999888
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=83.91 E-value=1.1 Score=44.55 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=23.0
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
...+|+|+|||+|....++.... +..+++..|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~---------------~~~~~~atDI 146 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE---------------YGWRFVGSDI 146 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC---------------CCCEEEEEeC
Confidence 35899999999995555442111 3478888888
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.82 E-value=0.52 Score=43.32 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
.-+|+|+|||||..++..
T Consensus 46 g~~V~DlG~GTG~La~ga 63 (198)
T COG2263 46 GKTVLDLGAGTGILAIGA 63 (198)
T ss_pred CCEEEEcCCCcCHHHHHH
Confidence 357999999999999876
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=82.37 E-value=0.6 Score=44.63 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCccchHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~ 81 (380)
..+|+|+|||+|..|..+.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~ 48 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELA 48 (258)
T ss_pred cCeEEEEeCccCHHHHHHH
Confidence 4789999999999999884
No 173
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=81.18 E-value=1.4 Score=43.19 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=18.0
Q ss_pred ceEEEeecCCCCccchHHHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQ 83 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ 83 (380)
.-+|+|+|||+|..|..++..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~ 57 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL 57 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh
Confidence 468999999999999888653
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.83 E-value=1.1 Score=42.60 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
+-.-+..|+|||.+.++.=--+...+ | .+- ..--|..+..=|++.++..| |++..+
T Consensus 208 ~~~aa~~L~~gGlfaFSvE~l~~~~~--f--------------~l~-------ps~RyAH~~~YVr~~l~~~G-l~~i~~ 263 (287)
T COG4976 208 FAGAAGLLAPGGLFAFSVETLPDDGG--F--------------VLG-------PSQRYAHSESYVRALLAASG-LEVIAI 263 (287)
T ss_pred HHHHHHhcCCCceEEEEecccCCCCC--e--------------ecc-------hhhhhccchHHHHHHHHhcC-ceEEEe
Confidence 44558999999999998632110000 0 000 11235566777899999999 999888
Q ss_pred EEEe
Q 044727 299 ETSH 302 (380)
Q Consensus 299 e~~~ 302 (380)
+-..
T Consensus 264 ~~tt 267 (287)
T COG4976 264 EDTT 267 (287)
T ss_pred eccc
Confidence 7543
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=80.73 E-value=0.63 Score=44.25 Aligned_cols=21 Identities=10% Similarity=-0.103 Sum_probs=17.6
Q ss_pred CceEEEeecCCCCccchHHHH
Q 044727 62 DCIRFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~ 82 (380)
...+|+|+|||+|..|..+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999988743
No 176
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=79.50 E-value=6.4 Score=41.21 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCceEEEEeccCC
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
..+|..=++-|||||+||-++..-.
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCC
Confidence 4568888899999999999987655
No 177
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=79.35 E-value=1.6 Score=40.25 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.4
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
..+|+|+|||+|..++.+
T Consensus 54 ~~~vLDl~~GsG~l~l~~ 71 (199)
T PRK10909 54 DARCLDCFAGSGALGLEA 71 (199)
T ss_pred CCEEEEcCCCccHHHHHH
Confidence 359999999999988865
No 178
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=77.73 E-value=7.1 Score=30.85 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHhccCceEEEEeccCC
Q 044727 219 LKFRSEELKTEGRMVLNFIGND 240 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~ 240 (380)
+....+.|+|||.+++......
T Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 138 LRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred HHHHHHhcCCCcEEEEEeccCC
Confidence 5555778999999999988765
No 179
>PRK04148 hypothetical protein; Provisional
Probab=74.81 E-value=8.3 Score=33.49 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=14.4
Q ss_pred CceEEEeecCCCCc-cchHH
Q 044727 62 DCIRFTDMGCSSGP-NAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~-Ns~~~ 80 (380)
+..+|+|+|||+|. .+..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L 35 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL 35 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH
Confidence 34789999999996 54444
No 180
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.00 E-value=3.7 Score=39.09 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Q 044727 48 LHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGN 112 (380)
Q Consensus 48 l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 112 (380)
|++|+.....+ .+-.+++|+|+|||..|..++++ -.-.||.-|.-.|
T Consensus 67 L~~ale~F~l~--~k~kv~LDiGsSTGGFTd~lLq~----------------gAk~VyavDVG~~ 113 (245)
T COG1189 67 LEKALEEFELD--VKGKVVLDIGSSTGGFTDVLLQR----------------GAKHVYAVDVGYG 113 (245)
T ss_pred HHHHHHhcCcC--CCCCEEEEecCCCccHHHHHHHc----------------CCcEEEEEEccCC
Confidence 44555544332 45689999999999999887433 1267888887653
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=70.87 E-value=4.4 Score=40.95 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=16.0
Q ss_pred eEEEeecCCCCccchHHH
Q 044727 64 IRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~ 81 (380)
.+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999998883
No 182
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=69.46 E-value=5 Score=40.82 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCCcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcce
Q 044727 24 GEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILH 103 (380)
Q Consensus 24 G~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~ 103 (380)
..+.-.|+-|...-+.+...+...+.. .....+|+|++||+|..++.+.... +.-.
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~ 83 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYALET---------------GVEK 83 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHHHHC---------------CCCE
Confidence 335678999988877666555544421 0123689999999999999883332 2247
Q ss_pred EEecCC
Q 044727 104 AFLNDL 109 (380)
Q Consensus 104 v~~nDL 109 (380)
|+.+|.
T Consensus 84 V~a~Di 89 (382)
T PRK04338 84 VTLNDI 89 (382)
T ss_pred EEEEeC
Confidence 899998
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=68.66 E-value=4.8 Score=36.69 Aligned_cols=20 Identities=15% Similarity=-0.085 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCccchHHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~ 82 (380)
..+++|++||+|..++.+++
T Consensus 50 g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh
Confidence 36899999999999988844
No 184
>PRK11524 putative methyltransferase; Provisional
Probab=67.49 E-value=10 Score=36.69 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccCceEEEEe
Q 044727 215 FTSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 215 ~~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
+..+|..-.+.|||||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888899999999999864
No 185
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=66.61 E-value=5.4 Score=40.93 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCccchHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~ 81 (380)
..+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999873
No 186
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=66.49 E-value=6.6 Score=36.22 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.3
Q ss_pred EEEeecCCCCccchHH
Q 044727 65 RFTDMGCSSGPNAFLP 80 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~ 80 (380)
+|+|||||-|..-..+
T Consensus 70 ~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQL 85 (227)
T ss_pred ceeeccCCchHHHHHH
Confidence 9999999999765554
No 187
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=64.06 E-value=23 Score=33.33 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=27.6
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
.++-+|+++|.+.|.-|+.+...+ + ...+++-.|..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l-------------~-~~g~l~tiE~~ 93 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL-------------P-DDGRLTTIERD 93 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC-------------C-CCCeEEEEeCC
Confidence 357899999999999999985554 1 14677777773
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=62.87 E-value=14 Score=35.71 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=38.6
Q ss_pred ceEEEeecCCCCccchHHHHHHH------------HHHHHHhhhcCCCCCcceEEecCCCCCchhhhh
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVI------------EALDTICSRLKHKPPILHAFLNDLPGNDFNTVS 118 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii------------~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 118 (380)
.-+|+++|+|.|..|..+++..- ..+++.. .....++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhc
Confidence 58999999999999999987643 2333332 1234699999998887888754
No 189
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=61.82 E-value=5.9 Score=38.03 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=36.8
Q ss_pred CCceEEEeecCCCCccchHHHH--------------HHHHHHHHHhhhcCCCCCcceEEecCCCCC------chhhhhcc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTL--------------QVIEALDTICSRLKHKPPILHAFLNDLPGN------DFNTVSKS 120 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N------DFn~lf~~ 120 (380)
+.|-+|+|+|||-=|.++..|. .+++.+.......+ +...+.+.|+-++ |-.-||+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLLSDPPKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSHTTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeeeccCCCCCcchhhHHHH
Confidence 4589999999999888874332 23333333322222 4577777788744 77789999
Q ss_pred CcchHH
Q 044727 121 LPSFYE 126 (380)
Q Consensus 121 l~~~~~ 126 (380)
+|-+.+
T Consensus 181 lp~le~ 186 (251)
T PF07091_consen 181 LPCLER 186 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 190
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=61.06 E-value=20 Score=33.29 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=13.3
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
.-+++|||||.|.-.+..
T Consensus 43 ~dvF~DlGSG~G~~v~~a 60 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQA 60 (205)
T ss_dssp T-EEEEES-TTSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 479999999999876654
No 191
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=60.76 E-value=34 Score=32.74 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.0
Q ss_pred eEEEeecCCCCccchHHHHHH
Q 044727 64 IRFTDMGCSSGPNAFLPTLQV 84 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~i 84 (380)
-+|++-|.|+|..|..+...+
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHh
Confidence 799999999999999996655
No 192
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=60.13 E-value=10 Score=38.17 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.6
Q ss_pred eEEEeecCCCCccchHHH
Q 044727 64 IRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~ 81 (380)
.+|+|++||+|..|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la 225 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA 225 (362)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 469999999999999663
No 193
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=58.83 E-value=11 Score=37.95 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=15.6
Q ss_pred eEEEeecCCCCccchHHH
Q 044727 64 IRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~ 81 (380)
.+|+|+|||+|..|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA 216 (353)
T ss_pred CcEEEEeccccHHHHHHH
Confidence 369999999999999663
No 194
>PLN02823 spermine synthase
Probab=58.59 E-value=53 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=15.9
Q ss_pred CCceEEEeecCCCCccchHH
Q 044727 61 PDCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~ 80 (380)
++|-+|+-+|+|.|..+..+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~ 121 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREV 121 (336)
T ss_pred CCCCEEEEECCCchHHHHHH
Confidence 46789999999999766544
No 195
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.58 E-value=6.5 Score=34.96 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.4
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
+..+++|+|||+|-.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 3478999999999888544
No 196
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=54.80 E-value=20 Score=36.41 Aligned_cols=29 Identities=10% Similarity=-0.080 Sum_probs=24.0
Q ss_pred cCCCcccCCCCCCccceEEcccccccccC
Q 044727 145 APGSFHGRLFPPCFLNLVYSSFCLHWLSR 173 (380)
Q Consensus 145 vpgSFy~~l~p~~svdl~~Ss~alhWls~ 173 (380)
+-+.|-..+|+++++|++.+.-+.+..++
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~ 193 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD 193 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCc
Confidence 55889899999999999998887777433
No 197
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=52.73 E-value=13 Score=37.35 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhhhcc-----CCCCceEEEeecCCCCccchHHH
Q 044727 44 TKPLLHESLFDLYCN-----GFPDCIRFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 44 ~~~~l~~ai~~~~~~-----~~~~~~~IaD~GCs~G~Ns~~~~ 81 (380)
+.=.|++++..+..+ ....-.+++|+|||+|.-|-.++
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 334566766655432 12234799999999999997773
No 198
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=52.50 E-value=53 Score=31.62 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred cCCCccc--CCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHG--RLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFR 222 (380)
Q Consensus 145 vpgSFy~--~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~R 222 (380)
+.|+.|+ +=|+++|+|+++ .+.|.. .- .-+.|++.|-+.|
T Consensus 190 ilGD~~e~V~~~~D~sfDaIi--------HDPPRf-S~----------------------AgeLYseefY~El------- 231 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAII--------HDPPRF-SL----------------------AGELYSEEFYREL------- 231 (287)
T ss_pred ecccHHHHHhcCCccccceEe--------eCCCcc-ch----------------------hhhHhHHHHHHHH-------
Confidence 5577775 348999999985 345543 21 2266776555554
Q ss_pred HHHhccCceEEEEeccCC
Q 044727 223 SEELKTEGRMVLNFIGND 240 (380)
Q Consensus 223 a~eL~pgG~l~~~~~g~~ 240 (380)
++-|+|||+|+=-+..++
T Consensus 232 ~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 232 YRILKRGGRLFHYVGNPG 249 (287)
T ss_pred HHHcCcCCcEEEEeCCCC
Confidence 788999999987766554
No 199
>PRK13699 putative methylase; Provisional
Probab=51.61 E-value=29 Score=32.61 Aligned_cols=21 Identities=19% Similarity=0.070 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 044727 216 TSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
..+|..-.+.|||||.+++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777889999999887643
No 200
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=51.42 E-value=7.4 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.8
Q ss_pred ceEEEeecCCCCccchHH
Q 044727 63 CIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~ 80 (380)
...+||+|||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 378999999999877654
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=50.64 E-value=8 Score=32.64 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=14.1
Q ss_pred EEEeecCCCCccchHH
Q 044727 65 RFTDMGCSSGPNAFLP 80 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~ 80 (380)
+|+|+||+.|..|+.+
T Consensus 1 ~vlDiGa~~G~~~~~~ 16 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF 16 (143)
T ss_pred CEEEccCCccHHHHHH
Confidence 5899999999988776
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=50.43 E-value=16 Score=35.40 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=14.8
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
.|.+|+|+|||.|.-+...
T Consensus 33 ~P~~vLD~GsGpGta~wAa 51 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAA 51 (274)
T ss_pred CCceEEEecCChHHHHHHH
Confidence 5789999999999754433
No 203
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=49.94 E-value=15 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhccCceEEEEe
Q 044727 213 IDFTSFLKFRSEELKTEGRMVLNF 236 (380)
Q Consensus 213 ~D~~~FL~~Ra~eL~pgG~l~~~~ 236 (380)
..+.+|++.-+.-|+|||.|++.-
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeC
Confidence 467888999999999999999975
No 204
>PHA03297 envelope glycoprotein L; Provisional
Probab=48.01 E-value=2.5 Score=37.18 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=39.5
Q ss_pred CCceEEEeecCCCCcc------chHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC----CCchhhh
Q 044727 61 PDCIRFTDMGCSSGPN------AFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP----GNDFNTV 117 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~N------s~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp----~NDFn~l 117 (380)
++|-||++-.||+|+. |...+.++.+.+....-+..+++||+-+.+.|-+ .|-|-.+
T Consensus 38 gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvvi 104 (185)
T PHA03297 38 GEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAVI 104 (185)
T ss_pred CCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHHH
Confidence 5689999999999985 3345566665554433334468899999999966 4555543
No 205
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=47.06 E-value=80 Score=30.72 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCc
Q 044727 213 IDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGS 292 (380)
Q Consensus 213 ~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~Gs 292 (380)
+++-.+|..-.+-||||| +..-+|+--.. ++ ++ + +. +-.....|.||++.+++.-|
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG--~WIN~GPLlyh---~~-------~~---~-~~-------~~~sveLs~eEi~~l~~~~G- 234 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGG--YWINFGPLLYH---FE-------PM---S-IP-------NEMSVELSLEEIKELIEKLG- 234 (270)
T ss_pred HHHHHHHHHHHHHhccCC--EEEecCCcccc---CC-------CC---C-CC-------CCcccCCCHHHHHHHHHHCC-
Confidence 466677999999999999 44455553111 00 00 0 00 11126678999999999999
Q ss_pred eeEeEEEE
Q 044727 293 FNIHQLET 300 (380)
Q Consensus 293 F~I~~~e~ 300 (380)
|++++-+.
T Consensus 235 F~~~~~~~ 242 (270)
T PF07942_consen 235 FEIEKEES 242 (270)
T ss_pred CEEEEEEE
Confidence 99988776
No 206
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=46.93 E-value=9.3 Score=32.09 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=14.8
Q ss_pred CceEEEeecCCCCccchHH
Q 044727 62 DCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~ 80 (380)
++...+|+|||-|-..-.+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred CCCceEEccCCchHHHHHH
Confidence 4678999999998665554
No 207
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=46.61 E-value=43 Score=32.96 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeccC
Q 044727 212 EIDFTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 212 ~~D~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
=.-++.+|..-...|+|||+|++..+-.
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 3568899999999999999999988743
No 208
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=45.09 E-value=24 Score=34.70 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=24.7
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
.+++|.+||.|.-|..+++.+ ++...|+.-|.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~--------------~~~g~VigiD~ 52 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERL--------------GPKGRLIAIDR 52 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhC--------------CCCCEEEEEcC
Confidence 699999999999999986553 13466777776
No 209
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=44.24 E-value=12 Score=35.26 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.4
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
++-+|+|+||++|.-++.+...+ ++..+++..|..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d 102 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDID 102 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence 46899999999999988774332 134688888873
No 210
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=43.81 E-value=12 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.1
Q ss_pred EEEeecCCCCccchHHHH
Q 044727 65 RFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~ 82 (380)
+|+|.-||.|.||+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~ 19 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR 19 (163)
T ss_dssp EEEETT-TTSHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHH
Confidence 699999999999999943
No 211
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=43.44 E-value=29 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=25.2
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
.+++|...|||||-=.--+.= .+.+... .....++|+..|+-
T Consensus 115 ~~irIWSAgCStGEEpYSlAm----ll~e~~~---~~~~~~~I~atDIs 156 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAM----TLADTLG---TAPGRWKVFASDID 156 (287)
T ss_pred CCEEEEEccccCCHHHHHHHH----HHHHhhc---ccCCCcEEEEEECC
Confidence 469999999999954332211 2222211 11125899999995
No 212
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=42.77 E-value=25 Score=37.10 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=28.0
Q ss_pred CceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
...+|+|.|||+|...+.++..+... . +...-+..++..|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~----~---~~~~~~~~i~g~DI 71 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEI----N---YFKEVELNIYFADI 71 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhc----C---Ccccceeeeeeech
Confidence 46899999999999988886665211 0 00112577788777
No 213
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.51 E-value=58 Score=29.40 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhccCceEEEEecc
Q 044727 203 VHKAYLDQFEIDF-----TSFLKFRSEELKTEGRMVLNFIG 238 (380)
Q Consensus 203 ~~~ay~~Q~~~D~-----~~FL~~Ra~eL~pgG~l~~~~~g 238 (380)
+...|++.+-+.| ..+|+...+-|||||+|-++++-
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 5566666655544 57999999999999999999874
No 214
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=39.37 E-value=44 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCccchHHHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQ 83 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ 83 (380)
-.+|+|+||+.|.=|.-.++.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CCEEEEccCCCChHHHHHHHh
Confidence 479999999999877666443
No 215
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=39.36 E-value=24 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHccCcccccccccccCcccCCH
Q 044727 245 GVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCV 280 (380)
Q Consensus 245 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~ 280 (380)
-+...+.+.+.+||.+|+|+-|+.-+-|+=|-|+|.
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 345667888999999999999999999999999864
No 216
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=37.96 E-value=35 Score=31.07 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=24.5
Q ss_pred EEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 65 RFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
+|+|+|+|-|--.+.+ +|.. |+.++++-|=
T Consensus 51 ~~lDiGSGaGfPGipL------aI~~---------p~~~~~LvEs 80 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPL------AIAR---------PDLQVTLVES 80 (184)
T ss_dssp EEEEETSTTTTTHHHH------HHH----------TTSEEEEEES
T ss_pred eEEecCCCCCChhHHH------HHhC---------CCCcEEEEeC
Confidence 8999999999999888 4332 7788998885
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.02 E-value=22 Score=32.55 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHccCcccccccccccCcccCCHH
Q 044727 248 ELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVE 281 (380)
Q Consensus 248 ~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~e 281 (380)
-.+.+++..||.+|+|..|++-+-|+=|-||+.+
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 3678889999999999999999999999999754
No 218
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=35.54 E-value=31 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHccCcccc
Q 044727 246 VFELMGMVLNDMVYEGLIEVS 266 (380)
Q Consensus 246 ~~~~l~~al~~mv~eG~i~~e 266 (380)
+=..|.++|++|+.+|.|+++
T Consensus 11 lG~aL~dtLDeli~~~~I~p~ 31 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQ 31 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHHHHHcCCCCHH
Confidence 345789999999999999986
No 219
>PF14904 FAM86: Family of unknown function
Probab=33.52 E-value=49 Score=27.30 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=25.3
Q ss_pred HHHHHHHhhHHHHHh--hChhHHHHHHHHHHHH
Q 044727 328 ADNIRAVSESLLANH--FGSAIMDDLFHRFTIK 358 (380)
Q Consensus 328 a~~iRA~~ep~l~~h--fge~i~delf~r~~~~ 358 (380)
.++.|+|...++..+ .+.++.|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 457788888888854 6789999999999875
No 220
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=33.20 E-value=17 Score=23.99 Aligned_cols=15 Identities=33% Similarity=0.798 Sum_probs=8.9
Q ss_pred CcccCCHHHHHHHHH
Q 044727 274 PMYNPCVEEVRQVIE 288 (380)
Q Consensus 274 P~Y~ps~eE~~~~ie 288 (380)
|++.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999888764
No 221
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=33.14 E-value=43 Score=24.96 Aligned_cols=30 Identities=30% Similarity=0.676 Sum_probs=24.0
Q ss_pred cccccCcccCCHHHHHHHHH----hcCceeEeEEE
Q 044727 269 ESFHFPMYNPCVEEVRQVIE----REGSFNIHQLE 299 (380)
Q Consensus 269 d~f~~P~Y~ps~eE~~~~ie----~~GsF~I~~~e 299 (380)
.+|.+|+|..|+||-..+-+ ..| |.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 36899999999999887776 346 8887764
No 222
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=32.83 E-value=27 Score=32.39 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.7
Q ss_pred CceEEEeecCCCCccchHHHHHH
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQV 84 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~i 84 (380)
++-+|+++||++|.-|+.+...+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 47899999999999999985443
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=31.96 E-value=80 Score=29.64 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.8
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
+.+++|+|+|-|--.+.+. |-. |+.+|.+-|=
T Consensus 68 ~~~~~DIGSGaGfPGipLA------I~~---------p~~~vtLles 99 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA------IAF---------PDLKVTLLES 99 (215)
T ss_pred CCEEEEeCCCCCCchhhHH------Hhc---------cCCcEEEEcc
Confidence 5799999999999999883 221 6678877774
No 224
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=30.62 E-value=1.3e+02 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=35.3
Q ss_pred CCceEEEeecCCCCccchHHHHHH------------HHHHHHHhhhcCCCCCcceEEecCCCCCc
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQV------------IEALDTICSRLKHKPPILHAFLNDLPGND 113 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~i------------i~~i~~~~~~~~~~~p~~~v~~nDLp~ND 113 (380)
..+-+|+++|-|||..|..+++.. +..+.++.+.. +-..-.||++.|.-.-|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEecccccCC
Confidence 347899999999999999887753 33444443211 11135899998876666
No 225
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=30.30 E-value=47 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.390 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHH
Q 044727 247 FELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIE 288 (380)
Q Consensus 247 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie 288 (380)
...+..+|+.|-..|.|+++|-|....|.+.|+. .-+.+|.
T Consensus 13 ~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 13 QHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 3466777899999999999999999999999864 3455554
No 226
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.04 E-value=35 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHccCccccccc
Q 044727 252 MVLNDMVYEGLIEVSKLE 269 (380)
Q Consensus 252 ~al~~mv~eG~i~~e~~d 269 (380)
..|.+|.+.|.|+++++.
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 346888899999999764
No 227
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=27.71 E-value=94 Score=30.43 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHH
Q 044727 212 EIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVR 284 (380)
Q Consensus 212 ~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~ 284 (380)
.+|+...+..-.+-|+|||.|+++...+. .+ .+.+.+++.+-+.+ -+-.+.+..|-=||+.++-+
T Consensus 214 ~~~y~~L~~~a~~ll~~gG~l~~~scs~~-i~---~~~l~~~~~~~a~~----~~~~~~~~~p~df~~~~~~~ 278 (286)
T PF10672_consen 214 ERDYKKLLRRAMKLLKPGGLLLTCSCSHH-IS---PDFLLEAVAEAARE----VEFIERLGQPPDFPDIDPDS 278 (286)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEE--TT-S----HHHHHHHHHHHHHH----CEEEEEEE------------
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCcc-cC---HHHHHHHHHHhCcc----ceEeeeeccccccccccccc
Confidence 35666667777788999999887765443 21 12333333333222 23334567777777765433
No 228
>smart00400 ZnF_CHCC zinc finger.
Probab=27.38 E-value=48 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.6
Q ss_pred eEEEeecCCCCccchHHHHHH
Q 044727 64 IRFTDMGCSSGPNAFLPTLQV 84 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~i 84 (380)
-..=++||+.|.+.+.++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999999887765
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=26.96 E-value=57 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.6
Q ss_pred EEEeecCCCCccchHHH
Q 044727 65 RFTDMGCSSGPNAFLPT 81 (380)
Q Consensus 65 ~IaD~GCs~G~Ns~~~~ 81 (380)
+|+|+=||+|..|+.+.
T Consensus 199 ~vlDlycG~G~fsl~la 215 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA 215 (352)
T ss_dssp EEEEES-TTTCCHHHHH
T ss_pred cEEEEeecCCHHHHHHH
Confidence 79999999999999883
No 230
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=26.36 E-value=25 Score=32.41 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLP 110 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 110 (380)
.++++|...|||||-=.--+.= .+.+... +..+-.++|+.+|+-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAm----ll~e~~~--~~~~~~~~I~atDi~ 73 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAM----LLLELLP--GALGWDFRILATDIS 73 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHH----HHHHHH---S-TT-SEEEEEEES-
T ss_pred CCCeEEEECCCCCChhHHHHHH----HHHHHhc--ccCCCceEEEEEECC
Confidence 3689999999999964333211 1222111 111225999999994
No 231
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=26.11 E-value=1.4e+02 Score=32.25 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=41.2
Q ss_pred EEEccCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCC----Ccch--hHHHHHH-------H
Q 044727 192 VCVAKTCSPFSVHK------AYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGND----KYHT--GVFELMG-------M 252 (380)
Q Consensus 192 i~~~~~s~~~~~~~------ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~----~~~~--~~~~~l~-------~ 252 (380)
|++...+ |++|.+ +|++||+||.-.=|.|-.+ .|.. |.-. .|++.+. .
T Consensus 390 iHVNGD~-PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~ftspvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 390 IHVNGDD-PEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTFTSPVMYKEVEARESVPDL 456 (913)
T ss_pred EEeCCCC-HHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccccChhHHHHHHhhhcccHH
Confidence 6666776 888776 4999999996555554333 2332 1111 2232221 1
Q ss_pred HHHHHHHccCccccccccc
Q 044727 253 VLNDMVYEGLIEVSKLESF 271 (380)
Q Consensus 253 al~~mv~eG~i~~e~~d~f 271 (380)
-+.+|++||++++|++..+
T Consensus 457 ya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred HHHHHHhcccccHHHHHHH
Confidence 2678999999999987554
No 232
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=26.04 E-value=50 Score=34.54 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.2
Q ss_pred CCceEEEeecCCCCccchHHHHH
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQ 83 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~ 83 (380)
.+-.-++|+|.|||-.|+..+..
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHh
Confidence 34578999999999999866543
No 233
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=25.84 E-value=1e+02 Score=29.90 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHHHhcCceeEeEE
Q 044727 219 LKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQL 298 (380)
Q Consensus 219 L~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~ie~~GsF~I~~~ 298 (380)
++.=...|.||..|+++-...+... ...+.+ .++-. .-..|.+.||.+|+...+. | |++..=
T Consensus 173 v~~l~d~lapGS~L~ish~t~d~~p-~~~~~~----~~~~~----------~~~~~~~~Rs~~ei~~~f~--g-~elveP 234 (267)
T PF04672_consen 173 VARLRDALAPGSYLAISHATDDGAP-ERAEAL----EAVYA----------QAGSPGRPRSREEIAAFFD--G-LELVEP 234 (267)
T ss_dssp HHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHH----HHHHH----------HCCS----B-HHHHHHCCT--T-SEE-TT
T ss_pred HHHHHHhCCCCceEEEEecCCCCCH-HHHHHH----HHHHH----------cCCCCceecCHHHHHHHcC--C-CccCCC
Confidence 4444668999999999998765222 111222 22212 2367999999999999996 5 665443
Q ss_pred EEEe-ecCCc
Q 044727 299 ETSH-ISWSV 307 (380)
Q Consensus 299 e~~~-~~~~~ 307 (380)
-+.. ..|.+
T Consensus 235 Glv~~~~WrP 244 (267)
T PF04672_consen 235 GLVPVPRWRP 244 (267)
T ss_dssp -SEEGGGSS-
T ss_pred ceecccccCC
Confidence 3333 34655
No 234
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=25.42 E-value=35 Score=33.37 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.3
Q ss_pred HhhHHHHHHH-HhhhccCCCCceEEEeecCCCCccchHH
Q 044727 43 KTKPLLHESL-FDLYCNGFPDCIRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 43 ~~~~~l~~ai-~~~~~~~~~~~~~IaD~GCs~G~Ns~~~ 80 (380)
.+.+.+.+++ ..+.. .--+|+||||++|--.+..
T Consensus 100 dl~~~l~~e~~~~~~~----~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSF----SGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHhhhheEe----cCceeEecCCcccccchhh
Confidence 4566667665 32321 2368999999998776655
No 235
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=25.29 E-value=1.2e+02 Score=28.66 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCceEEEEeccC
Q 044727 217 SFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 217 ~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
.|++...+.|+|||.+++.....
T Consensus 172 ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 172 EFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEET
T ss_pred HHHHHHHhhcCCCcEEEEEccCc
Confidence 46888899999999999998443
No 236
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=25.28 E-value=71 Score=23.62 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCce
Q 044727 205 KAYLDQFEIDFTSFLKFRSEELKTEGR 231 (380)
Q Consensus 205 ~ay~~Q~~~D~~~FL~~Ra~eL~pgG~ 231 (380)
+.+++-|..||..++......||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778889999999999999999774
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.07 E-value=93 Score=29.58 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=18.9
Q ss_pred CceEEEeecCCCCccchHHHHH
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQ 83 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~ 83 (380)
+...|+|+|.|.|..|..+.+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~ 51 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKR 51 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcc
Confidence 4589999999999999988544
No 238
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=25.06 E-value=1.4e+02 Score=30.11 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCceEEEEeccCCCcchhHHHHHHHHHHHHHHccCcccccccccccCcccCC
Q 044727 216 TSFLKFRSEELKTEGRMVLNFIGNDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPC 279 (380)
Q Consensus 216 ~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps 279 (380)
+.||+.-++....||+.++-.+.-+..+ .+.=+|..-|..| +...|+|+.+
T Consensus 219 RdFLk~VhecVa~GGkvlIPvFALGRAQ-ElCiLLd~YWERm------------~lk~Piyfs~ 269 (501)
T KOG1136|consen 219 RDFLKKVHECVARGGKVLIPVFALGRAQ-ELCILLDDYWERM------------NLKVPIYFSS 269 (501)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeecchHH-HHHHHHHHHHHhh------------ccCCCccccc
Confidence 4579999999999999999988666443 2223445556655 3467888753
No 239
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=1.2e+02 Score=30.89 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCceEEEeecCCCCccchHHHHHH
Q 044727 61 PDCIRFTDMGCSSGPNAFLPTLQV 84 (380)
Q Consensus 61 ~~~~~IaD~GCs~G~Ns~~~~~~i 84 (380)
|.+..|+++|.|+|..+.-++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHH
Confidence 678999999999997655544444
No 240
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=24.76 E-value=70 Score=32.52 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=42.6
Q ss_pred CcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEE
Q 044727 26 GDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAF 105 (380)
Q Consensus 26 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~ 105 (380)
+...||-.+.+-|.+.-.+.....+... ....++|+|+-||+|.-++...+.+ . ..-+|+
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e~-------------~-ga~~Vv 73 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHEI-------------E-GVREVF 73 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhhC-------------C-CCCEEE
Confidence 4589999888888766544433332111 0124899999999999999884442 0 125788
Q ss_pred ecCC
Q 044727 106 LNDL 109 (380)
Q Consensus 106 ~nDL 109 (380)
+||+
T Consensus 74 ~nD~ 77 (374)
T TIGR00308 74 ANDI 77 (374)
T ss_pred EEeC
Confidence 9998
No 241
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=24.76 E-value=1.5e+02 Score=27.19 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 044727 153 LFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRSEELKTEGRM 232 (380)
Q Consensus 153 l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l 232 (380)
..|.+.+|+|++=+.|-.++..-. ...++.-++.|+|||.|
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~~~---------------------------------------~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPETQ---------------------------------------QRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp ------EEEEEE-SSGGGS-HHHH---------------------------------------HHHHHHHGGGEEEEEEE
T ss_pred CcccCCccEEEecCEEEEeCHHHH---------------------------------------HHHHHHHHHHcCCCCEE
Confidence 446778899999998887543211 12377779999999999
Q ss_pred EEE
Q 044727 233 VLN 235 (380)
Q Consensus 233 ~~~ 235 (380)
++.
T Consensus 172 ~lG 174 (196)
T PF01739_consen 172 FLG 174 (196)
T ss_dssp EE-
T ss_pred EEe
Confidence 875
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=23.74 E-value=7.5e+02 Score=24.77 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred eEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhccCcchHHHhhhhcCCCCCCcceee
Q 044727 64 IRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDLPGNDFNTVSKSLPSFYERLKTERGHDDFGSCFIA 143 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 143 (380)
.+|+|+=++-|.=|..+.+.. ......|+.+|...+-...|...+.- .| ..++=+.
T Consensus 158 e~VlD~cAAPGGKTthla~~~-------------~~~~~iV~A~D~~~~Rl~~l~~nl~R--------lG---~~nv~~~ 213 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELM-------------ENEGAIVVAVDVSPKRLKRLRENLKR--------LG---VRNVIVV 213 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhc-------------CCCCceEEEEcCCHHHHHHHHHHHHH--------cC---CCceEEE
Confidence 899999999999998885443 11236679999865333333333321 12 1222222
Q ss_pred ccCCCcccCCCCCC-ccceEEcccccccccCCCccccccCCCCCCCCcc-EEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044727 144 AAPGSFHGRLFPPC-FLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRD-VCVAKTCSPFSVHKAYLDQFEIDFTSFLKF 221 (380)
Q Consensus 144 ~vpgSFy~~l~p~~-svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~-i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~ 221 (380)
-.-++.+....+.. .+|-+. =+.|+.-.. .+.|.. +.-..+ +..+.+.-.-| ..+|..
T Consensus 214 ~~d~~~~~~~~~~~~~fD~iL--------lDaPCSg~G-----~irr~Pd~~~~~~--~~~i~~l~~lQ-----~~iL~~ 273 (355)
T COG0144 214 NKDARRLAELLPGGEKFDRIL--------LDAPCSGTG-----VIRRDPDVKWRRT--PEDIAELAKLQ-----KEILAA 273 (355)
T ss_pred ecccccccccccccCcCcEEE--------ECCCCCCCc-----ccccCccccccCC--HHHHHHHHHHH-----HHHHHH
Confidence 22333333344443 366552 345554221 111100 111111 22222221112 456888
Q ss_pred HHHHhccCceEEEEeccCCCc
Q 044727 222 RSEELKTEGRMVLNFIGNDKY 242 (380)
Q Consensus 222 Ra~eL~pgG~l~~~~~g~~~~ 242 (380)
=.+-|||||.|+-++....+.
T Consensus 274 a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 274 ALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred HHHhcCCCCEEEEEccCCchh
Confidence 899999999999999887643
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=23.52 E-value=38 Score=31.45 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhcCceeEeEEEEEe
Q 044727 278 PCVEEVRQVIEREGSFNIHQLETSH 302 (380)
Q Consensus 278 ps~eE~~~~ie~~GsF~I~~~e~~~ 302 (380)
...+++|..+.+.| |.|..-+++.
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv~ 126 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLVE 126 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEEe
Confidence 47889999999999 9998877653
No 244
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=23.52 E-value=76 Score=29.90 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=29.1
Q ss_pred cCCCcccCCCCCCccceEEcccccccccCCCccccccCCCCCCCCccEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044727 145 APGSFHGRLFPPCFLNLVYSSFCLHWLSRMPKELVSECGIPLLNKRDVCVAKTCSPFSVHKAYLDQFEIDFTSFLKFRS 223 (380)
Q Consensus 145 vpgSFy~~l~p~~svdl~~Ss~alhWls~~P~~~~~~~~~~~~nkg~i~~~~~s~~~~~~~ay~~Q~~~D~~~FL~~Ra 223 (380)
-||-+|+..||.+-+- +|..|.+. -|-+...+ + +-.+|..+|...||.=-+
T Consensus 133 ~~~~~~N~~fpg~~ia-------------MP~~L~~~---------~v~y~dGt-~-----at~~q~a~DVv~FL~w~a 183 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAIA-------------MPPPLSDG---------QVEYDDGT-P-----ATVDQMAKDVVNFLAWAA 183 (219)
T ss_dssp STTSEEETTSTTSEES-------------S--TSSTT---------SS-BTTTB---------HHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCccc-------------chhhhhhh---------cccccCCC-c-----chHHHHHHHHHHHHHHHc
Confidence 5788888888875543 46666552 12122111 3 334899999999997433
No 245
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.06 E-value=1e+02 Score=27.62 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHccCcccccccccccCcccCCHHHHHHHH----HhcCceeEeEEEEEeec
Q 044727 247 FELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVI----EREGSFNIHQLETSHIS 304 (380)
Q Consensus 247 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~Y~ps~eE~~~~i----e~~GsF~I~~~e~~~~~ 304 (380)
.+.+..+|.+|.++|++..-+-..-.+-+|-++++|....| .+.| +.-.-+.+++..
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg-~~nti~TlYElt 128 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG-QLNTICTLYELT 128 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC-cCCCceEEEEec
Confidence 35677889999999998774444556788999999988876 4566 333334445433
No 246
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=22.78 E-value=3e+02 Score=30.67 Aligned_cols=97 Identities=15% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeccCCCcch-hHHHHHHHHHHHHHHccCccc--ccccccccCcccC-
Q 044727 203 VHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHT-GVFELMGMVLNDMVYEGLIEV--SKLESFHFPMYNP- 278 (380)
Q Consensus 203 ~~~ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~~~~~~-~~~~~l~~al~~mv~eG~i~~--e~~d~f~~P~Y~p- 278 (380)
+...|+.. |.++|.+|.-.=.+.++++ +|+|.++..+ ...++|..|+++=.. .+|.- =-+.+..-|+-..
T Consensus 199 ~~aiyqAr----f~kYL~~RGl~~~~~~~v~-afLGDgEmDEpes~gAi~~A~re~Ld-NlifVincNlQrLDgpVrgng 272 (887)
T COG2609 199 IQAIYQAR----FLKYLEARGLKDTSDQKVW-AFLGDGEMDEPESRGAITEAAREKLD-NLIFVINCNLQRLDGPVRGNG 272 (887)
T ss_pred HHHHHHHH----HHHHHHhcCCcCCCCCeEE-EEecCcccCCchhhHHHHHHHHhcCC-ceEEEEecchhhcCCcccCCc
Confidence 56677765 5567888876666666654 5777774433 567788777663211 11110 0001122355444
Q ss_pred -CHHHHHHHHHhcCceeEeEEEEEeecCCc
Q 044727 279 -CVEEVRQVIEREGSFNIHQLETSHISWSV 307 (380)
Q Consensus 279 -s~eE~~~~ie~~GsF~I~~~e~~~~~~~~ 307 (380)
-..|+..+++-.| |.|+++.- -..|+.
T Consensus 273 kiiqelE~~FrgAG-W~VikviW-g~~wd~ 300 (887)
T COG2609 273 KIIQELEGIFRGAG-WNVIKVIW-GRRWDE 300 (887)
T ss_pred hhHHHHHHHhccCC-ceEEEEEe-cccHHH
Confidence 6789999999999 88876642 244543
No 247
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=22.62 E-value=6e+02 Score=28.00 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.4
Q ss_pred ceEEEeecCCCCccchHHHH
Q 044727 63 CIRFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~ 82 (380)
...++|-+||+|...+....
T Consensus 191 ~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred CCeEEccCCCccHHHHHHHH
Confidence 47899999999988876643
No 248
>PLN02476 O-methyltransferase
Probab=22.54 E-value=50 Score=32.20 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.3
Q ss_pred CceEEEeecCCCCccchHHHH
Q 044727 62 DCIRFTDMGCSSGPNAFLPTL 82 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~ 82 (380)
++-+|+|+||++|.-|+.+..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 468999999999999998844
No 249
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.18 E-value=1e+02 Score=30.63 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEEeccC
Q 044727 206 AYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 206 ay~~Q~~~D~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
.|-.+==..++.+|..--+.|+|||+|++..|-.
T Consensus 214 I~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 214 IYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred eeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 3444445689999999999999999999988743
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=22.04 E-value=90 Score=30.88 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeccC
Q 044727 212 EIDFTSFLKFRSEELKTEGRMVLNFIGN 239 (380)
Q Consensus 212 ~~D~~~FL~~Ra~eL~pgG~l~~~~~g~ 239 (380)
=.-+..+|..-..-|+|||+|++..+-.
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 3568889999999999999999988743
No 251
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.94 E-value=1.3e+02 Score=28.25 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=15.8
Q ss_pred eEEEeecCCCCccchHH
Q 044727 64 IRFTDMGCSSGPNAFLP 80 (380)
Q Consensus 64 ~~IaD~GCs~G~Ns~~~ 80 (380)
.+|+|+=-|.|..|.++
T Consensus 50 ~tVid~~PGgGy~TrI~ 66 (238)
T COG4798 50 ATVIDLIPGGGYFTRIF 66 (238)
T ss_pred CEEEEEecCCccHhhhh
Confidence 79999999999999887
No 252
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.24 E-value=56 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=13.9
Q ss_pred cCcccCCHHHHHHHHH
Q 044727 273 FPMYNPCVEEVRQVIE 288 (380)
Q Consensus 273 ~P~Y~ps~eE~~~~ie 288 (380)
+|++.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999998775
No 253
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=21.18 E-value=4.9e+02 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=26.7
Q ss_pred cceeeeccCCCCCcchHHHhcHHHHHHHHHhhHHHHHHHHhhhccCCCCceEEEeecCCCCcc
Q 044727 14 QVEQVLFMNGGEGDNSYANNSAPSREATLKTKPLLHESLFDLYCNGFPDCIRFTDMGCSSGPN 76 (380)
Q Consensus 14 ~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~N 76 (380)
++...-+..|. +..++......|++++..+..++++ . +-.+.++|+|.|-|-+
T Consensus 186 ~l~Glh~h~gs-~~~~~~~~~~~~~~~~~~~~~~~~~----~-----g~~~~~idiGGG~~v~ 238 (398)
T TIGR03099 186 DFQGFHIFAGS-QNLNAEAIIEAQAKTLALALRLAES----A-----PAPVRVINIGGGFGIP 238 (398)
T ss_pred eEEEEEecccc-cCCCHHHHHHHHHHHHHHHHHHHHH----h-----CCCCCEEEeCCcccCC
Confidence 34444334443 3333433334455544444443332 1 2246799999998754
No 254
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=21.16 E-value=98 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=17.3
Q ss_pred CceEEEeecCCCCccchHHHHHH
Q 044727 62 DCIRFTDMGCSSGPNAFLPTLQV 84 (380)
Q Consensus 62 ~~~~IaD~GCs~G~Ns~~~~~~i 84 (380)
.+++|+++|.|+|.+..-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 36999999999998877766655
No 255
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=20.59 E-value=85 Score=29.01 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.3
Q ss_pred ceEEEeecCCCCccchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 044727 63 CIRFTDMGCSSGPNAFLPTLQVIEALDTICSRLKHKPPILHAFLNDL 109 (380)
Q Consensus 63 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 109 (380)
..+|+|.-||.|+.|+.+... . +.-.|+.+|+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~--------~-------~~~~V~A~d~ 133 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKH--------G-------KAKRVYAVDL 133 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHH--------T--------SSEEEEEES
T ss_pred ceEEEEccCCccHHHHHHhhh--------c-------CccEEEEecC
Confidence 479999999999999997321 1 2367999999
Done!