BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044728
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ----AVNVFYVVDASGNPVK 392
ISL ++ G L+ V R+F EN +++T E +R S+ F +D PV
Sbjct: 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIE--SRPSRLNKDEYEFFTYLDKRTKPVL 91
Query: 393 SETIESVRKEIGLTILRVKDDAYSKSPP------QESGRFS 427
I+S+R +IG T+ + D + P QE RF+
Sbjct: 92 GSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFA 132
>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
Length = 192
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 27/178 (15%)
Query: 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEA-------T 176
+H I G DRPG+ +EV +++ CN++ + + ++ I+ T
Sbjct: 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVET 64
Query: 177 GLPI--DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHK---ERRLHQMMYADRDY 231
LP+ D + +KR + D + V V+S K + Q +A R
Sbjct: 65 TLPLLGQQHDLITMMKRTSPH----DHQTHAYTVEVYVESDDKLGLTEKFTQ-FFAQRQI 119
Query: 232 DMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLL-----FDAVCTLTDMQ 284
M S SA SK + E ++ + ++ R L+ FDA+CT D+Q
Sbjct: 120 GM---ASLSAQTISKDKLHSEQ--NQFHIAISARVDSGCNLMQLQEEFDALCTALDVQ 172
>pdb|3BQJ|A Chain A, Va387 Polypeptide
Length = 304
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 170 YITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMY-AD 228
Y +E P+ PD + KI+ +L + D R+ VS S H +L + Y D
Sbjct: 87 YDPTEEIPAPLGTPDFVGKIQGMLTQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTD 146
Query: 229 RDYDMNYAES 238
+ D+ ++
Sbjct: 147 TNNDLQTGQN 156
>pdb|2OBR|A Chain A, Crystal Structures Of P Domain Of Norovirus Va387
pdb|2OBS|A Chain A, Crystal Structures Of P Domain Of Norovirus Va387 In
Complex With Blood Group Trisaccharides Type A
pdb|2OBT|A Chain A, Crystal Structures Of P Domain Of Norovirus Va387 In
Complex With Blood Group Trisaccharides Type B
Length = 327
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 170 YITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMY-AD 228
Y +E P+ PD + KI+ +L + D R+ VS S H +L + Y D
Sbjct: 99 YDPTEEIPAPLGTPDFVGKIQGMLTQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTD 158
Query: 229 RDYDMNYAES 238
+ D+ ++
Sbjct: 159 TNNDLQTGQN 168
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAE 369
L L C DRAG++S V+ ENG ++ A+
Sbjct: 9 LTLSCPDRAGIVSAVSTFLFENGQNILDAQ 38
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAE 369
L L C+D G++S+V+ NG ++ AE
Sbjct: 10 LSLACQDAPGIVSEVSTFLFNNGANIVEAE 39
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 345 EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESV 399
ED G L ++ F G++++R E G + F+ +DA G+ S +++
Sbjct: 210 EDHPGALXEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADAL 264
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 180 IDDPDTLAKIKR--LLLYVLKGDRDKRSANTAVSVDSTHKERR 220
++D + LA++K+ +L ++ G+ K NT ++ TH+E+R
Sbjct: 327 LEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKR 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,150,389
Number of Sequences: 62578
Number of extensions: 468691
Number of successful extensions: 1332
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 11
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)