Query 044728
Match_columns 450
No_of_seqs 334 out of 2076
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.9E-28 4.1E-33 273.3 23.5 164 243-407 661-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 5.8E-28 1.3E-32 270.3 23.6 163 245-408 687-879 (884)
3 PRK01759 glnD PII uridylyl-tra 99.9 7.8E-26 1.7E-30 252.4 25.2 174 21-197 662-853 (854)
4 PRK05007 PII uridylyl-transfer 99.9 9.7E-26 2.1E-30 252.4 24.0 175 22-199 687-880 (884)
5 COG2844 GlnD UTP:GlnB (protein 99.9 5.5E-26 1.2E-30 241.4 19.9 165 244-409 669-863 (867)
6 PRK00275 glnD PII uridylyl-tra 99.9 1.7E-25 3.7E-30 250.5 24.8 179 21-200 686-888 (895)
7 TIGR01693 UTase_glnD [Protein- 99.9 2.7E-25 5.8E-30 249.2 23.6 165 244-408 653-850 (850)
8 PRK00275 glnD PII uridylyl-tra 99.9 1E-24 2.2E-29 244.2 26.2 183 123-331 702-886 (895)
9 PRK04374 PII uridylyl-transfer 99.9 6.3E-24 1.4E-28 236.5 25.1 176 21-198 674-867 (869)
10 PRK03381 PII uridylyl-transfer 99.9 4.6E-24 9.9E-29 236.0 22.6 154 245-404 586-773 (774)
11 PRK03059 PII uridylyl-transfer 99.9 6.5E-24 1.4E-28 236.8 23.6 173 21-198 663-855 (856)
12 PRK04374 PII uridylyl-transfer 99.9 1.1E-23 2.4E-28 234.6 24.5 181 120-330 685-866 (869)
13 PRK03381 PII uridylyl-transfer 99.9 1.4E-23 3E-28 232.2 23.3 169 22-194 586-773 (774)
14 PRK05092 PII uridylyl-transfer 99.9 2.3E-23 5.1E-28 235.2 24.8 179 22-201 718-918 (931)
15 COG2844 GlnD UTP:GlnB (protein 99.9 1.2E-23 2.5E-28 223.8 19.8 175 21-198 669-862 (867)
16 TIGR01693 UTase_glnD [Protein- 99.9 2.3E-23 5E-28 233.7 23.4 175 21-197 653-849 (850)
17 PRK03059 PII uridylyl-transfer 99.9 4.6E-23 1E-27 230.0 24.7 181 120-330 673-854 (856)
18 PRK05092 PII uridylyl-transfer 99.9 1.3E-22 2.8E-27 229.2 26.1 190 119-332 726-916 (931)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 6.2E-20 1.3E-24 143.8 10.1 72 338-409 2-74 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 9.6E-20 2.1E-24 141.7 10.1 69 337-405 1-70 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 7.4E-19 1.6E-23 137.7 9.8 71 338-409 1-74 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 3.9E-17 8.4E-22 128.0 11.2 75 259-333 1-75 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 4.4E-16 9.6E-21 121.2 10.5 69 125-194 1-69 (72)
24 PRK11589 gcvR glycine cleavage 99.7 1.1E-15 2.4E-20 141.4 13.7 141 256-404 5-163 (190)
25 cd04896 ACT_ACR-like_3 ACT dom 99.6 2E-15 4.4E-20 118.4 10.5 72 126-199 1-74 (75)
26 cd04925 ACT_ACR_2 ACT domain-c 99.6 9.7E-15 2.1E-19 115.1 11.0 73 126-199 1-74 (74)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.2E-14 2.6E-19 114.3 10.7 71 260-330 2-73 (73)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.4E-14 3.1E-19 114.2 10.9 72 260-331 1-73 (74)
29 cd04927 ACT_ACR-like_2 Second 99.5 6E-14 1.3E-18 111.2 11.2 70 261-331 2-72 (76)
30 cd04900 ACT_UUR-like_1 ACT dom 99.5 5.2E-14 1.1E-18 110.6 10.7 71 126-197 2-73 (73)
31 cd04927 ACT_ACR-like_2 Second 99.5 8.8E-14 1.9E-18 110.2 10.3 68 339-406 2-70 (76)
32 cd04928 ACT_TyrKc Uncharacteri 99.5 1.8E-13 3.8E-18 105.3 9.7 65 37-103 2-67 (68)
33 PRK11589 gcvR glycine cleavage 99.5 7E-13 1.5E-17 122.9 15.1 151 34-198 6-167 (190)
34 COG2716 GcvR Glycine cleavage 99.5 3.4E-13 7.4E-18 119.9 9.7 141 257-405 3-161 (176)
35 PRK00227 glnD PII uridylyl-tra 99.4 1.3E-12 2.9E-17 142.1 15.8 132 260-407 547-690 (693)
36 cd04928 ACT_TyrKc Uncharacteri 99.4 1.1E-12 2.4E-17 100.9 9.9 65 260-330 2-67 (68)
37 cd04926 ACT_ACR_4 C-terminal 99.3 2.1E-11 4.5E-16 95.5 10.5 68 37-105 2-69 (72)
38 cd04926 ACT_ACR_4 C-terminal 99.3 2.4E-11 5.1E-16 95.2 10.4 67 260-327 2-68 (72)
39 PRK00227 glnD PII uridylyl-tra 99.2 3.1E-10 6.7E-15 123.8 18.9 144 125-330 546-690 (693)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.3E-10 2.8E-15 89.9 10.3 69 338-406 1-69 (70)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.8E-10 4E-15 89.1 10.4 69 260-329 1-69 (70)
42 COG2716 GcvR Glycine cleavage 99.1 9.5E-10 2.1E-14 98.1 10.5 154 34-197 3-163 (176)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 2E-08 4.3E-13 77.2 10.3 69 126-196 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 2.4E-08 5.2E-13 76.7 10.3 69 338-406 1-69 (70)
45 COG4747 ACT domain-containing 98.7 1.2E-07 2.5E-12 79.4 10.6 114 37-173 4-118 (142)
46 PF13740 ACT_6: ACT domain; PD 98.6 3.2E-07 6.9E-12 72.5 10.4 66 125-198 2-67 (76)
47 PF13740 ACT_6: ACT domain; PD 98.6 4.3E-07 9.2E-12 71.8 10.3 64 259-329 2-65 (76)
48 COG4747 ACT domain-containing 98.4 1.1E-05 2.4E-10 67.7 13.2 125 261-408 5-131 (142)
49 cd04894 ACT_ACR-like_1 ACT dom 98.4 1.9E-06 4.1E-11 63.9 7.1 67 37-106 1-67 (69)
50 PF01842 ACT: ACT domain; Int 98.3 2.9E-06 6.4E-11 64.2 8.3 48 37-84 1-50 (66)
51 cd04870 ACT_PSP_1 CT domains f 98.3 2.8E-06 6E-11 66.9 8.0 65 127-198 1-65 (75)
52 cd04870 ACT_PSP_1 CT domains f 98.3 2.8E-06 6.2E-11 66.8 8.0 62 261-328 1-62 (75)
53 PF01842 ACT: ACT domain; Int 98.3 3.7E-06 8E-11 63.6 8.1 63 338-405 1-63 (66)
54 cd04893 ACT_GcvR_1 ACT domains 98.3 5.5E-06 1.2E-10 65.6 9.2 62 260-328 2-63 (77)
55 cd04893 ACT_GcvR_1 ACT domains 98.3 4.9E-06 1.1E-10 65.9 8.9 64 126-197 2-65 (77)
56 PRK07431 aspartate kinase; Pro 98.2 0.002 4.2E-08 70.4 31.0 258 43-369 278-554 (587)
57 cd04894 ACT_ACR-like_1 ACT dom 98.1 1.7E-05 3.7E-10 58.9 6.8 67 126-196 1-67 (69)
58 cd04875 ACT_F4HF-DF N-terminal 98.0 1.2E-05 2.5E-10 63.1 6.1 65 339-405 1-65 (74)
59 cd04872 ACT_1ZPV ACT domain pr 98.0 2.4E-05 5.3E-10 63.4 7.2 67 126-198 2-68 (88)
60 cd04872 ACT_1ZPV ACT domain pr 98.0 2.7E-05 5.8E-10 63.2 7.3 64 260-328 2-65 (88)
61 cd04869 ACT_GcvR_2 ACT domains 97.9 8E-05 1.7E-09 59.1 8.7 65 127-198 1-71 (81)
62 cd04869 ACT_GcvR_2 ACT domains 97.9 8.4E-05 1.8E-09 58.9 8.8 61 262-328 2-68 (81)
63 PRK00194 hypothetical protein; 97.9 5.8E-05 1.3E-09 61.4 7.7 48 259-306 3-50 (90)
64 PRK00194 hypothetical protein; 97.9 6.5E-05 1.4E-09 61.1 7.7 50 36-85 3-52 (90)
65 cd04875 ACT_F4HF-DF N-terminal 97.8 0.00013 2.7E-09 57.1 8.5 35 261-295 1-35 (74)
66 PRK13010 purU formyltetrahydro 97.8 0.00052 1.1E-08 68.1 14.2 117 36-160 9-128 (289)
67 PF13291 ACT_4: ACT domain; PD 97.7 0.00023 5E-09 56.4 8.8 63 338-405 7-71 (80)
68 TIGR00655 PurU formyltetrahydr 97.7 0.0011 2.4E-08 65.5 15.1 116 38-160 2-119 (280)
69 PF13291 ACT_4: ACT domain; PD 97.7 0.00033 7.2E-09 55.5 9.2 63 125-194 6-70 (80)
70 PRK13010 purU formyltetrahydro 97.5 0.0022 4.8E-08 63.6 13.8 107 259-369 9-125 (289)
71 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0014 3E-08 50.9 9.1 61 340-405 2-63 (74)
72 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0015 3.3E-08 50.6 9.4 61 128-195 2-63 (74)
73 COG3830 ACT domain-containing 97.4 0.00024 5.2E-09 57.2 4.6 68 125-198 3-70 (90)
74 PRK13011 formyltetrahydrofolat 97.4 0.005 1.1E-07 61.1 15.0 116 36-160 7-124 (286)
75 PRK06027 purU formyltetrahydro 97.4 0.0053 1.1E-07 60.9 14.9 104 258-366 5-118 (286)
76 PRK06027 purU formyltetrahydro 97.3 0.0076 1.6E-07 59.8 15.0 48 35-82 5-54 (286)
77 TIGR00655 PurU formyltetrahydr 97.3 0.0085 1.8E-07 59.3 15.1 105 261-370 2-117 (280)
78 PRK13011 formyltetrahydrofolat 97.2 0.0089 1.9E-07 59.3 14.8 106 259-370 7-122 (286)
79 cd04908 ACT_Bt0572_1 N-termina 97.2 0.0034 7.3E-08 47.8 8.7 46 338-385 2-47 (66)
80 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0046 9.9E-08 47.0 8.9 62 340-406 1-67 (73)
81 COG3830 ACT domain-containing 97.1 0.0007 1.5E-08 54.5 4.0 68 36-104 3-70 (90)
82 cd04877 ACT_TyrR N-terminal AC 97.0 0.0037 8.1E-08 48.8 8.1 59 339-405 2-60 (74)
83 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0058 1.3E-07 46.4 9.0 61 128-195 1-66 (73)
84 PRK06737 acetolactate synthase 97.0 0.0051 1.1E-07 48.5 8.6 63 338-405 3-66 (76)
85 cd04909 ACT_PDH-BS C-terminal 97.0 0.0046 9.9E-08 47.3 8.2 62 338-406 2-65 (69)
86 cd04889 ACT_PDH-BS-like C-term 97.0 0.0025 5.5E-08 46.7 6.3 46 128-173 1-47 (56)
87 cd04877 ACT_TyrR N-terminal AC 97.0 0.0043 9.3E-08 48.4 7.9 58 127-194 2-59 (74)
88 PRK08178 acetolactate synthase 97.0 0.011 2.3E-07 48.7 10.2 83 261-357 10-94 (96)
89 cd04889 ACT_PDH-BS-like C-term 97.0 0.0024 5.1E-08 46.9 6.0 46 340-385 1-47 (56)
90 COG0788 PurU Formyltetrahydrof 97.0 0.0031 6.8E-08 60.7 8.1 43 35-77 6-50 (287)
91 cd04878 ACT_AHAS N-terminal AC 96.9 0.0088 1.9E-07 45.2 9.3 61 339-405 2-64 (72)
92 CHL00100 ilvH acetohydroxyacid 96.9 0.0038 8.3E-08 57.2 8.3 64 338-405 3-66 (174)
93 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0038 8.3E-08 47.5 7.0 46 126-173 2-47 (66)
94 PRK08178 acetolactate synthase 96.9 0.0058 1.3E-07 50.2 8.2 64 337-405 8-71 (96)
95 cd04888 ACT_PheB-BS C-terminal 96.9 0.0076 1.7E-07 46.8 8.5 62 127-195 2-65 (76)
96 cd04888 ACT_PheB-BS C-terminal 96.8 0.0095 2.1E-07 46.2 8.9 63 339-405 2-65 (76)
97 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.0093 2E-07 46.0 8.5 63 338-405 1-65 (79)
98 PRK13562 acetolactate synthase 96.8 0.0071 1.5E-07 48.5 7.6 65 338-405 3-67 (84)
99 CHL00100 ilvH acetohydroxyacid 96.8 0.0098 2.1E-07 54.5 9.4 65 126-198 3-69 (174)
100 PRK06737 acetolactate synthase 96.8 0.0091 2E-07 47.1 8.0 64 126-197 3-68 (76)
101 cd04909 ACT_PDH-BS C-terminal 96.7 0.015 3.2E-07 44.4 9.1 47 126-172 2-50 (69)
102 COG0788 PurU Formyltetrahydrof 96.7 0.009 1.9E-07 57.6 9.2 66 258-328 6-73 (287)
103 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.0073 1.6E-07 45.4 7.1 44 340-383 2-47 (71)
104 TIGR00119 acolac_sm acetolacta 96.7 0.012 2.5E-07 53.2 9.2 64 338-405 2-65 (157)
105 cd04905 ACT_CM-PDT C-terminal 96.6 0.018 3.8E-07 45.6 9.0 66 338-405 2-68 (80)
106 TIGR00119 acolac_sm acetolacta 96.6 0.016 3.4E-07 52.3 9.5 65 126-198 2-68 (157)
107 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.015 3.4E-07 44.7 8.3 61 127-194 2-64 (79)
108 PRK13562 acetolactate synthase 96.6 0.013 2.7E-07 47.0 7.6 65 126-197 3-69 (84)
109 cd04878 ACT_AHAS N-terminal AC 96.5 0.022 4.8E-07 42.9 8.8 60 127-194 2-63 (72)
110 PRK11895 ilvH acetolactate syn 96.5 0.022 4.8E-07 51.6 9.6 65 126-198 3-69 (161)
111 PRK11895 ilvH acetolactate syn 96.5 0.022 4.8E-07 51.6 9.6 62 338-405 3-66 (161)
112 cd04882 ACT_Bt0572_2 C-termina 96.4 0.016 3.5E-07 43.3 7.3 36 339-374 1-36 (65)
113 PRK11152 ilvM acetolactate syn 96.4 0.024 5.1E-07 44.8 8.2 61 338-405 4-66 (76)
114 cd04903 ACT_LSD C-terminal ACT 96.3 0.022 4.8E-07 42.9 7.6 33 340-372 2-34 (71)
115 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.015 3.2E-07 43.8 6.3 46 128-173 2-49 (71)
116 cd04874 ACT_Af1403 N-terminal 96.2 0.035 7.7E-07 41.9 8.2 47 127-173 2-49 (72)
117 cd04876 ACT_RelA-SpoT ACT dom 96.2 0.044 9.6E-07 40.1 8.5 61 340-405 1-62 (71)
118 PRK11152 ilvM acetolactate syn 96.2 0.032 6.9E-07 44.0 7.8 63 126-197 4-68 (76)
119 PRK08577 hypothetical protein; 96.0 0.073 1.6E-06 46.7 10.4 77 24-105 42-122 (136)
120 cd04902 ACT_3PGDH-xct C-termin 96.0 0.024 5.3E-07 43.4 6.5 44 340-383 2-47 (73)
121 PRK08577 hypothetical protein; 96.0 0.056 1.2E-06 47.5 9.5 65 337-405 56-122 (136)
122 cd04901 ACT_3PGDH C-terminal A 95.9 0.0094 2E-07 45.3 3.7 44 340-383 2-45 (69)
123 cd04874 ACT_Af1403 N-terminal 95.9 0.066 1.4E-06 40.4 8.4 35 339-373 2-36 (72)
124 PRK07431 aspartate kinase; Pro 95.9 3.6 7.8E-05 45.1 27.6 191 34-291 346-554 (587)
125 cd04884 ACT_CBS C-terminal ACT 95.9 0.065 1.4E-06 41.3 8.4 61 340-405 2-65 (72)
126 cd04902 ACT_3PGDH-xct C-termin 95.9 0.038 8.3E-07 42.2 7.0 46 128-173 2-49 (73)
127 cd04882 ACT_Bt0572_2 C-termina 95.8 0.021 4.5E-07 42.7 5.4 34 128-161 2-35 (65)
128 cd04884 ACT_CBS C-terminal ACT 95.8 0.06 1.3E-06 41.5 8.1 34 128-161 2-35 (72)
129 cd04903 ACT_LSD C-terminal ACT 95.8 0.031 6.7E-07 42.1 6.3 46 128-173 2-49 (71)
130 cd04905 ACT_CM-PDT C-terminal 95.8 0.11 2.4E-06 41.0 9.6 48 126-173 2-50 (80)
131 cd02116 ACT ACT domains are co 95.8 0.072 1.6E-06 36.9 7.8 35 340-374 1-35 (60)
132 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.089 1.9E-06 38.5 8.5 46 128-173 1-47 (71)
133 cd04901 ACT_3PGDH C-terminal A 95.7 0.014 3E-07 44.4 4.0 45 262-306 2-46 (69)
134 cd04880 ACT_AAAH-PDT-like ACT 95.7 0.092 2E-06 40.8 8.6 63 341-405 3-66 (75)
135 cd04883 ACT_AcuB C-terminal AC 95.7 0.085 1.8E-06 40.3 8.3 62 338-407 2-65 (72)
136 cd04904 ACT_AAAH ACT domain of 95.6 0.08 1.7E-06 41.4 7.9 62 339-404 2-64 (74)
137 cd04931 ACT_PAH ACT domain of 95.5 0.089 1.9E-06 42.9 8.2 65 338-405 15-80 (90)
138 PF13710 ACT_5: ACT domain; PD 95.5 0.057 1.2E-06 40.9 6.5 56 134-197 1-58 (63)
139 PRK04435 hypothetical protein; 95.4 0.077 1.7E-06 47.3 8.3 74 27-105 60-134 (147)
140 cd04898 ACT_ACR-like_4 ACT dom 95.3 0.026 5.6E-07 43.9 4.2 66 339-405 2-72 (77)
141 PRK04435 hypothetical protein; 95.3 0.16 3.5E-06 45.3 9.8 69 120-194 64-133 (147)
142 cd04898 ACT_ACR-like_4 ACT dom 95.2 0.044 9.4E-07 42.6 5.0 70 128-197 3-74 (77)
143 PF13710 ACT_5: ACT domain; PD 95.2 0.099 2.2E-06 39.6 7.0 56 346-405 1-56 (63)
144 cd02116 ACT ACT domains are co 95.1 0.11 2.5E-06 35.9 7.0 34 39-72 1-34 (60)
145 PRK06635 aspartate kinase; Rev 95.1 0.51 1.1E-05 49.0 14.5 108 37-157 263-375 (404)
146 TIGR00656 asp_kin_monofn aspar 95.1 0.74 1.6E-05 47.8 15.7 106 35-155 259-370 (401)
147 PRK07334 threonine dehydratase 95.0 0.12 2.7E-06 53.7 9.6 65 337-406 326-395 (403)
148 PRK07334 threonine dehydratase 95.0 0.15 3.2E-06 53.1 10.1 66 123-195 324-394 (403)
149 cd04883 ACT_AcuB C-terminal AC 94.9 0.2 4.4E-06 38.2 8.3 46 37-82 2-49 (72)
150 TIGR00656 asp_kin_monofn aspar 94.5 2.1 4.6E-05 44.4 17.1 101 257-368 258-371 (401)
151 PRK11899 prephenate dehydratas 94.4 0.18 3.8E-06 49.9 8.3 53 337-390 194-247 (279)
152 cd04929 ACT_TPH ACT domain of 94.3 0.27 5.8E-06 38.5 7.7 49 340-389 3-52 (74)
153 PRK06635 aspartate kinase; Rev 93.8 0.79 1.7E-05 47.6 12.5 103 258-369 261-375 (404)
154 cd04871 ACT_PSP_2 ACT domains 93.6 0.047 1E-06 43.9 2.2 61 339-405 1-71 (84)
155 cd04885 ACT_ThrD-I Tandem C-te 93.6 0.48 1E-05 36.1 7.7 60 128-195 1-61 (68)
156 PRK10872 relA (p)ppGpp synthet 93.5 0.35 7.6E-06 54.0 9.5 63 338-405 667-731 (743)
157 cd04871 ACT_PSP_2 ACT domains 93.4 0.049 1.1E-06 43.8 2.1 62 127-196 1-72 (84)
158 PRK10872 relA (p)ppGpp synthet 93.1 0.47 1E-05 52.9 9.8 64 124-194 665-730 (743)
159 TIGR00719 sda_beta L-serine de 93.1 0.41 9E-06 45.2 8.1 48 336-383 147-196 (208)
160 cd04880 ACT_AAAH-PDT-like ACT 93.0 1 2.2E-05 34.8 9.0 64 128-195 2-66 (75)
161 cd04885 ACT_ThrD-I Tandem C-te 92.9 0.58 1.3E-05 35.6 7.3 31 263-294 2-32 (68)
162 PF13840 ACT_7: ACT domain ; P 92.8 0.46 9.9E-06 36.1 6.6 47 122-173 3-53 (65)
163 PRK06291 aspartate kinase; Pro 92.6 4.2 9.1E-05 43.2 15.8 108 35-157 320-433 (465)
164 PRK11092 bifunctional (p)ppGpp 92.6 0.57 1.2E-05 52.2 9.5 64 337-405 626-690 (702)
165 PRK08210 aspartate kinase I; R 92.5 4.2 9.2E-05 42.2 15.4 99 35-155 270-372 (403)
166 TIGR00719 sda_beta L-serine de 92.5 0.55 1.2E-05 44.4 8.1 54 120-173 143-198 (208)
167 COG0077 PheA Prephenate dehydr 92.2 0.56 1.2E-05 46.2 7.9 54 337-391 194-248 (279)
168 cd04931 ACT_PAH ACT domain of 92.1 1.3 2.8E-05 36.1 8.8 68 259-330 14-82 (90)
169 PRK11092 bifunctional (p)ppGpp 92.1 0.74 1.6E-05 51.3 9.6 63 125-194 626-689 (702)
170 PRK09034 aspartate kinase; Rev 91.9 4.8 0.0001 42.6 15.1 108 36-158 308-421 (454)
171 PRK10622 pheA bifunctional cho 91.9 0.63 1.4E-05 48.2 8.3 53 337-390 297-350 (386)
172 PRK08210 aspartate kinase I; R 91.9 2.8 6.1E-05 43.6 13.2 97 257-367 269-372 (403)
173 PRK08818 prephenate dehydrogen 91.8 0.46 1E-05 48.9 7.2 50 337-387 295-345 (370)
174 TIGR00691 spoT_relA (p)ppGpp s 91.8 0.79 1.7E-05 51.0 9.5 64 337-405 610-674 (683)
175 PRK09034 aspartate kinase; Rev 91.4 4.5 9.8E-05 42.9 14.3 107 258-372 307-423 (454)
176 TIGR00691 spoT_relA (p)ppGpp s 91.3 1 2.2E-05 50.2 9.6 64 124-194 609-673 (683)
177 COG1707 ACT domain-containing 91.2 0.76 1.7E-05 41.4 6.8 37 127-163 4-40 (218)
178 PRK06291 aspartate kinase; Pro 90.8 6.6 0.00014 41.8 14.8 102 257-369 319-433 (465)
179 PRK11790 D-3-phosphoglycerate 90.6 0.51 1.1E-05 49.3 6.1 60 337-400 338-397 (409)
180 cd04930 ACT_TH ACT domain of t 90.5 0.88 1.9E-05 38.9 6.5 50 337-386 41-91 (115)
181 PRK06545 prephenate dehydrogen 90.5 1.7 3.7E-05 44.5 9.8 50 337-386 290-339 (359)
182 cd04904 ACT_AAAH ACT domain of 90.4 1.5 3.3E-05 34.1 7.3 47 127-173 2-49 (74)
183 PRK11790 D-3-phosphoglycerate 90.2 1.2 2.6E-05 46.6 8.4 52 122-173 335-386 (409)
184 cd04906 ACT_ThrD-I_1 First of 90.0 2.5 5.4E-05 33.8 8.4 60 127-195 3-64 (85)
185 PRK06382 threonine dehydratase 90.0 4 8.6E-05 42.6 12.2 67 122-195 327-398 (406)
186 COG0527 LysC Aspartokinases [A 89.7 19 0.0004 38.2 16.9 120 34-173 305-430 (447)
187 PRK09181 aspartate kinase; Val 89.4 14 0.00029 39.5 15.8 105 35-158 328-437 (475)
188 COG0317 SpoT Guanosine polypho 89.3 1.5 3.1E-05 48.6 8.5 65 123-194 625-690 (701)
189 TIGR00657 asp_kinases aspartat 89.1 17 0.00037 38.2 16.3 108 35-157 301-413 (441)
190 PRK06545 prephenate dehydrogen 88.9 1.4 3.1E-05 45.0 7.9 53 121-173 286-338 (359)
191 PRK06382 threonine dehydratase 88.7 2.1 4.5E-05 44.6 9.0 68 335-407 328-400 (406)
192 PRK12483 threonine dehydratase 88.6 16 0.00035 39.4 15.8 141 258-412 344-509 (521)
193 PRK06349 homoserine dehydrogen 88.6 1.9 4E-05 45.4 8.6 65 337-405 348-412 (426)
194 PF13840 ACT_7: ACT domain ; P 88.5 1.5 3.2E-05 33.3 5.7 45 257-306 4-52 (65)
195 COG1707 ACT domain-containing 88.5 1.5 3.3E-05 39.5 6.6 37 38-74 4-41 (218)
196 COG0317 SpoT Guanosine polypho 87.7 2.6 5.7E-05 46.7 9.2 74 249-328 616-691 (701)
197 PLN02551 aspartokinase 87.7 22 0.00048 38.4 16.1 113 35-160 365-482 (521)
198 PRK09436 thrA bifunctional asp 87.6 13 0.00029 42.4 15.2 114 34-158 313-432 (819)
199 TIGR00657 asp_kinases aspartat 87.5 15 0.00033 38.6 14.7 101 258-369 301-413 (441)
200 cd04906 ACT_ThrD-I_1 First of 87.3 4.9 0.00011 32.0 8.4 66 339-410 3-69 (85)
201 PRK09181 aspartate kinase; Val 87.1 8.5 0.00018 41.1 12.5 101 258-369 328-436 (475)
202 PRK09084 aspartate kinase III; 86.9 27 0.00059 36.9 16.1 103 35-151 305-413 (448)
203 PRK12483 threonine dehydratase 86.6 19 0.00041 38.9 14.9 116 35-157 344-473 (521)
204 PLN02317 arogenate dehydratase 86.5 3 6.5E-05 43.0 8.3 67 337-405 283-364 (382)
205 PRK09436 thrA bifunctional asp 86.4 11 0.00025 42.9 13.8 102 257-369 313-431 (819)
206 cd04932 ACT_AKiii-LysC-EC_1 AC 86.3 6.1 0.00013 30.8 8.3 61 339-405 3-67 (75)
207 cd04929 ACT_TPH ACT domain of 86.3 5.3 0.00011 31.2 7.8 47 127-173 2-49 (74)
208 PLN02551 aspartokinase 85.8 34 0.00073 37.0 16.3 105 257-371 364-481 (521)
209 PRK14646 hypothetical protein; 85.6 10 0.00022 34.1 10.4 92 271-364 8-102 (155)
210 PRK14630 hypothetical protein; 85.5 7.3 0.00016 34.6 9.3 77 268-348 6-85 (143)
211 KOG2663 Acetolactate synthase, 85.4 1.6 3.6E-05 41.9 5.4 46 261-306 79-126 (309)
212 TIGR01127 ilvA_1Cterm threonin 85.0 15 0.00032 37.8 12.8 65 124-195 304-373 (380)
213 COG0440 IlvH Acetolactate synt 84.6 3.9 8.5E-05 37.0 7.1 67 125-198 4-71 (163)
214 PRK14636 hypothetical protein; 84.5 9.1 0.0002 35.2 9.7 80 269-349 4-87 (176)
215 PRK14634 hypothetical protein; 84.5 12 0.00026 33.7 10.3 77 270-348 7-88 (155)
216 PRK08198 threonine dehydratase 84.4 7.3 0.00016 40.5 10.3 39 122-160 324-362 (404)
217 cd04930 ACT_TH ACT domain of t 84.2 3 6.4E-05 35.6 6.0 49 125-173 41-90 (115)
218 COG0440 IlvH Acetolactate synt 84.1 3.3 7.2E-05 37.4 6.5 63 338-405 5-68 (163)
219 TIGR01127 ilvA_1Cterm threonin 84.0 6.2 0.00013 40.6 9.5 68 336-408 304-376 (380)
220 cd04935 ACT_AKiii-DAPDC_1 ACT 83.9 6.3 0.00014 30.7 7.3 56 345-405 12-67 (75)
221 KOG2663 Acetolactate synthase, 83.8 2.8 6E-05 40.4 6.1 38 123-160 75-112 (309)
222 PRK08818 prephenate dehydrogen 83.5 2.6 5.7E-05 43.4 6.4 49 124-173 294-343 (370)
223 PRK06349 homoserine dehydrogen 83.1 4.8 0.0001 42.3 8.3 54 120-173 343-396 (426)
224 COG0077 PheA Prephenate dehydr 83.0 5.8 0.00013 39.1 8.2 50 124-173 193-243 (279)
225 PRK11899 prephenate dehydratas 82.8 7.5 0.00016 38.5 9.1 49 125-173 194-243 (279)
226 PRK13581 D-3-phosphoglycerate 82.3 3.2 6.9E-05 44.9 6.8 61 337-401 452-514 (526)
227 PRK14645 hypothetical protein; 82.0 16 0.00034 32.9 10.0 90 269-362 8-102 (154)
228 PRK08198 threonine dehydratase 81.9 9.1 0.0002 39.8 9.8 66 35-106 326-396 (404)
229 PRK13581 D-3-phosphoglycerate 81.3 3.7 7.9E-05 44.4 6.8 54 120-173 447-502 (526)
230 TIGR01327 PGDH D-3-phosphoglyc 81.2 3 6.5E-05 45.0 6.1 61 337-401 451-513 (525)
231 PRK09224 threonine dehydratase 80.9 53 0.0012 35.3 15.4 137 258-406 327-486 (504)
232 PRK08961 bifunctional aspartat 80.1 54 0.0012 37.7 16.0 103 35-153 321-429 (861)
233 PRK11898 prephenate dehydratas 80.1 7.4 0.00016 38.6 8.0 66 338-405 197-264 (283)
234 PRK09224 threonine dehydratase 79.6 45 0.00097 35.9 14.3 117 35-159 327-456 (504)
235 PLN02550 threonine dehydratase 79.6 29 0.00062 38.1 12.8 140 260-413 418-580 (591)
236 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.4 19 0.00042 26.3 8.4 32 127-158 3-37 (66)
237 COG2150 Predicted regulator of 79.0 5.6 0.00012 35.8 6.0 33 339-371 95-129 (167)
238 COG0527 LysC Aspartokinases [A 78.9 21 0.00047 37.7 11.4 119 257-386 305-431 (447)
239 PLN02550 threonine dehydratase 78.6 74 0.0016 35.0 15.6 114 36-157 417-543 (591)
240 PRK09466 metL bifunctional asp 78.6 92 0.002 35.7 17.0 104 35-156 316-425 (810)
241 PRK10820 DNA-binding transcrip 78.2 5.4 0.00012 43.0 6.9 43 339-386 2-44 (520)
242 PRK14637 hypothetical protein; 77.5 26 0.00057 31.3 10.0 76 269-348 7-86 (151)
243 TIGR01327 PGDH D-3-phosphoglyc 77.1 5 0.00011 43.4 6.2 54 120-173 446-501 (525)
244 PRK09084 aspartate kinase III; 76.7 29 0.00062 36.8 11.7 99 257-363 304-413 (448)
245 cd04913 ACT_AKii-LysC-BS-like_ 76.2 15 0.00033 27.3 7.2 42 132-173 9-51 (75)
246 COG2150 Predicted regulator of 76.1 4.8 0.0001 36.2 4.7 40 31-70 90-129 (167)
247 cd04937 ACT_AKi-DapG-BS_2 ACT 76.1 26 0.00057 25.9 8.3 28 127-154 3-33 (64)
248 PRK08526 threonine dehydratase 75.9 44 0.00096 34.8 12.7 67 122-195 323-394 (403)
249 cd04919 ACT_AK-Hom3_2 ACT doma 75.9 29 0.00062 25.5 8.5 34 127-160 3-39 (66)
250 PRK14647 hypothetical protein; 75.8 33 0.00072 30.9 10.2 85 272-362 10-99 (159)
251 cd04890 ACT_AK-like_1 ACT doma 75.6 20 0.00043 26.2 7.5 51 345-403 11-61 (62)
252 TIGR01268 Phe4hydrox_tetr phen 75.2 11 0.00024 39.5 7.9 53 337-390 16-69 (436)
253 PRK14631 hypothetical protein; 74.7 40 0.00087 30.9 10.6 92 271-364 9-119 (174)
254 PRK14640 hypothetical protein; 74.6 35 0.00077 30.5 10.0 88 272-365 8-100 (152)
255 COG4492 PheB ACT domain-contai 74.4 14 0.00031 32.2 6.9 48 35-82 71-119 (150)
256 PF05088 Bac_GDH: Bacterial NA 73.9 31 0.00066 42.0 12.0 131 22-158 473-610 (1528)
257 PRK00092 ribosome maturation p 72.9 42 0.0009 30.0 10.1 74 272-349 9-87 (154)
258 PRK08961 bifunctional aspartat 72.4 87 0.0019 36.1 15.0 102 257-365 320-429 (861)
259 cd04922 ACT_AKi-HSDH-ThrA_2 AC 72.2 20 0.00044 26.2 6.8 44 339-384 3-49 (66)
260 PRK14643 hypothetical protein; 71.8 49 0.0011 30.1 10.3 92 272-365 11-107 (164)
261 PRK14639 hypothetical protein; 71.6 39 0.00085 29.8 9.4 85 276-365 3-91 (140)
262 PRK14638 hypothetical protein; 71.2 48 0.001 29.6 10.0 86 272-362 10-100 (150)
263 cd04932 ACT_AKiii-LysC-EC_1 AC 70.8 43 0.00094 26.0 8.6 44 126-173 2-48 (75)
264 cd04919 ACT_AK-Hom3_2 ACT doma 70.2 37 0.00081 24.8 7.9 34 339-372 3-39 (66)
265 cd04924 ACT_AK-Arch_2 ACT doma 69.9 40 0.00086 24.5 8.5 46 126-173 2-50 (66)
266 PRK10622 pheA bifunctional cho 69.7 24 0.00051 36.7 8.8 50 124-173 296-346 (386)
267 PRK14633 hypothetical protein; 68.7 60 0.0013 29.0 10.1 87 272-364 6-96 (150)
268 PRK08526 threonine dehydratase 68.6 82 0.0018 32.9 12.6 71 335-410 324-399 (403)
269 cd04868 ACT_AK-like ACT domain 68.6 11 0.00024 26.4 4.5 32 339-370 2-36 (60)
270 cd04912 ACT_AKiii-LysC-EC-like 68.1 32 0.0007 26.4 7.4 61 339-405 3-67 (75)
271 cd04913 ACT_AKii-LysC-BS-like_ 68.0 14 0.00031 27.4 5.3 27 344-370 9-35 (75)
272 TIGR01270 Trp_5_monoox tryptop 67.6 16 0.00034 38.6 7.0 50 337-386 31-82 (464)
273 cd04935 ACT_AKiii-DAPDC_1 ACT 67.1 57 0.0012 25.3 9.0 56 133-195 12-67 (75)
274 cd04891 ACT_AK-LysC-DapG-like_ 66.9 18 0.00039 25.5 5.5 41 344-384 8-49 (61)
275 PF05088 Bac_GDH: Bacterial NA 65.8 3.3E+02 0.0072 33.6 22.2 178 23-201 328-569 (1528)
276 PRK14632 hypothetical protein; 65.4 67 0.0014 29.4 9.9 74 272-349 10-87 (172)
277 cd04934 ACT_AK-Hom3_1 CT domai 64.6 33 0.00072 26.5 6.7 53 346-405 13-65 (73)
278 cd04933 ACT_AK1-AT_1 ACT domai 64.2 30 0.00066 27.2 6.5 39 344-386 11-49 (78)
279 cd04912 ACT_AKiii-LysC-EC-like 64.0 44 0.00095 25.7 7.4 30 37-66 2-34 (75)
280 cd04891 ACT_AK-LysC-DapG-like_ 63.9 21 0.00046 25.1 5.3 42 132-173 8-50 (61)
281 TIGR02079 THD1 threonine dehyd 63.7 1.2E+02 0.0025 31.8 12.7 67 122-195 322-390 (409)
282 COG3283 TyrR Transcriptional r 63.5 19 0.00042 37.0 6.4 59 339-405 2-60 (511)
283 PRK09466 metL bifunctional asp 63.0 92 0.002 35.7 12.5 101 257-368 315-425 (810)
284 cd04916 ACT_AKiii-YclM-BS_2 AC 62.6 57 0.0012 23.7 8.4 34 127-160 3-39 (66)
285 COG0779 Uncharacterized protei 61.6 87 0.0019 28.2 9.6 92 270-365 8-104 (153)
286 cd04937 ACT_AKi-DapG-BS_2 ACT 61.4 18 0.00039 26.9 4.6 28 339-366 3-33 (64)
287 PRK08841 aspartate kinase; Val 61.1 2.1E+02 0.0046 29.7 15.4 112 48-198 266-377 (392)
288 cd04868 ACT_AK-like ACT domain 60.8 15 0.00033 25.6 4.0 32 127-158 2-36 (60)
289 cd04924 ACT_AK-Arch_2 ACT doma 60.8 48 0.001 24.0 6.9 45 339-385 3-50 (66)
290 PF02576 DUF150: Uncharacteris 60.2 48 0.0011 29.0 7.8 70 276-348 2-75 (141)
291 PRK08639 threonine dehydratase 59.6 1.2E+02 0.0027 31.6 12.1 69 121-195 332-401 (420)
292 cd04892 ACT_AK-like_2 ACT doma 58.8 62 0.0013 22.9 8.2 32 127-158 2-36 (65)
293 PRK11898 prephenate dehydratas 58.0 50 0.0011 32.7 8.3 50 124-173 195-246 (283)
294 COG3978 Acetolactate synthase 57.4 83 0.0018 25.0 7.6 65 125-198 3-69 (86)
295 COG4492 PheB ACT domain-contai 57.0 63 0.0014 28.3 7.5 53 121-173 68-121 (150)
296 cd04916 ACT_AKiii-YclM-BS_2 AC 56.2 62 0.0013 23.5 6.8 34 339-372 3-39 (66)
297 TIGR01124 ilvA_2Cterm threonin 54.3 1.6E+02 0.0035 31.6 12.0 109 258-374 324-455 (499)
298 TIGR02079 THD1 threonine dehyd 54.1 79 0.0017 33.0 9.5 68 34-107 323-392 (409)
299 COG3978 Acetolactate synthase 53.0 48 0.001 26.3 5.6 47 337-383 3-51 (86)
300 cd04892 ACT_AK-like_2 ACT doma 52.5 30 0.00065 24.6 4.5 32 339-370 2-36 (65)
301 cd04936 ACT_AKii-LysC-BS-like_ 50.6 89 0.0019 22.2 7.9 30 128-157 3-35 (63)
302 PRK14646 hypothetical protein; 49.8 1.4E+02 0.0031 26.8 9.1 63 350-413 9-71 (155)
303 PTZ00324 glutamate dehydrogena 49.8 1E+02 0.0022 36.0 9.9 88 14-101 204-299 (1002)
304 cd04923 ACT_AK-LysC-DapG-like_ 49.7 92 0.002 22.1 7.9 31 127-157 2-35 (63)
305 cd04921 ACT_AKi-HSDH-ThrA-like 49.5 46 0.00099 25.5 5.3 34 339-372 3-39 (80)
306 TIGR01124 ilvA_2Cterm threonin 48.8 2.6E+02 0.0056 30.1 12.5 66 122-195 322-387 (499)
307 PRK00907 hypothetical protein; 48.0 87 0.0019 25.6 6.8 66 335-405 15-84 (92)
308 PLN02317 arogenate dehydratase 47.5 1.2E+02 0.0026 31.5 9.2 38 125-162 283-320 (382)
309 PF04083 Abhydro_lipase: Parti 47.3 52 0.0011 24.8 5.0 33 54-86 2-34 (63)
310 cd04920 ACT_AKiii-DAPDC_2 ACT 47.3 1.1E+02 0.0025 22.5 8.1 27 127-153 2-31 (63)
311 PRK08639 threonine dehydratase 46.6 1.1E+02 0.0025 31.9 9.3 68 34-107 334-403 (420)
312 TIGR01268 Phe4hydrox_tetr phen 46.4 93 0.002 32.8 8.4 49 125-173 16-65 (436)
313 PRK14635 hypothetical protein; 46.4 1.4E+02 0.0031 26.9 8.7 94 267-365 3-102 (162)
314 PRK08841 aspartate kinase; Val 46.0 1.4E+02 0.0031 31.0 9.7 95 257-369 256-350 (392)
315 cd04933 ACT_AK1-AT_1 ACT domai 45.6 37 0.0008 26.8 4.2 37 133-173 12-48 (78)
316 PRK14634 hypothetical protein; 44.9 1.6E+02 0.0036 26.3 8.8 62 350-412 9-70 (155)
317 TIGR01270 Trp_5_monoox tryptop 44.6 46 0.001 35.2 5.8 53 121-173 27-81 (464)
318 PRK14644 hypothetical protein; 43.4 2.2E+02 0.0047 25.0 9.1 64 278-348 6-74 (136)
319 cd04936 ACT_AKii-LysC-BS-like_ 42.6 53 0.0011 23.4 4.5 31 339-369 2-35 (63)
320 cd04923 ACT_AK-LysC-DapG-like_ 41.6 56 0.0012 23.3 4.5 31 339-369 2-35 (63)
321 cd04914 ACT_AKi-DapG-BS_1 ACT 41.1 45 0.00097 25.2 3.9 31 37-67 2-33 (67)
322 cd04918 ACT_AK1-AT_2 ACT domai 40.3 1.5E+02 0.0033 21.9 8.3 34 127-160 3-38 (65)
323 cd04921 ACT_AKi-HSDH-ThrA-like 40.1 1.6E+02 0.0036 22.3 8.5 34 126-159 2-38 (80)
324 PRK14641 hypothetical protein; 39.9 2.6E+02 0.0056 25.6 9.3 76 281-362 20-104 (173)
325 PRK05925 aspartate kinase; Pro 39.8 4.8E+02 0.01 27.6 16.6 102 36-155 300-404 (440)
326 cd04890 ACT_AK-like_1 ACT doma 36.7 55 0.0012 23.7 3.7 37 133-173 11-47 (62)
327 cd04934 ACT_AK-Hom3_1 CT domai 36.5 2E+02 0.0043 22.1 7.0 54 133-195 12-65 (73)
328 cd04920 ACT_AKiii-DAPDC_2 ACT 36.3 1.7E+02 0.0038 21.5 6.5 41 339-384 2-46 (63)
329 PRK10820 DNA-binding transcrip 36.0 42 0.00091 36.2 4.2 35 127-161 2-36 (520)
330 COG3603 Uncharacterized conser 35.7 1.9E+02 0.0042 24.9 7.1 40 120-159 58-100 (128)
331 PRK14645 hypothetical protein; 35.5 3.2E+02 0.007 24.5 9.1 62 350-412 11-72 (154)
332 cd07247 SgaA_N_like N-terminal 34.7 1.4E+02 0.0031 23.9 6.4 51 34-90 60-110 (114)
333 PF04083 Abhydro_lipase: Parti 34.1 1.1E+02 0.0023 23.1 4.9 33 277-309 2-34 (63)
334 cd04915 ACT_AK-Ectoine_2 ACT d 32.4 1.3E+02 0.0027 22.5 5.2 34 38-71 4-39 (66)
335 COG2061 ACT-domain-containing 32.2 3.8E+02 0.0083 24.2 8.9 31 260-290 6-36 (170)
336 PRK14632 hypothetical protein; 32.2 3.9E+02 0.0085 24.4 9.3 90 49-151 10-99 (172)
337 cd04914 ACT_AKi-DapG-BS_1 ACT 32.1 73 0.0016 24.0 3.8 43 127-173 3-46 (67)
338 cd07261 Glo_EDI_BRP_like_11 Th 31.5 98 0.0021 24.9 4.9 52 35-90 59-110 (114)
339 PRK00907 hypothetical protein; 31.3 1.9E+02 0.004 23.7 6.2 66 36-107 17-86 (92)
340 PRK02001 hypothetical protein; 30.2 3.7E+02 0.008 24.1 8.5 66 277-349 12-79 (152)
341 COG0779 Uncharacterized protei 29.4 4.1E+02 0.0088 23.9 8.6 91 46-151 7-100 (153)
342 PRK14636 hypothetical protein; 29.4 4.3E+02 0.0092 24.2 9.0 61 350-411 7-67 (176)
343 cd04915 ACT_AK-Ectoine_2 ACT d 28.0 2.5E+02 0.0055 20.8 7.3 33 126-158 3-37 (66)
344 cd04907 ACT_ThrD-I_2 Second of 27.8 3E+02 0.0065 21.6 7.2 69 339-413 3-71 (81)
345 PRK14637 hypothetical protein; 24.3 5.1E+02 0.011 23.1 8.6 60 348-410 8-67 (151)
346 PRK14638 hypothetical protein; 23.8 5.2E+02 0.011 23.0 9.3 92 48-151 9-101 (150)
347 cd04917 ACT_AKiii-LysC-EC_2 AC 23.6 2.9E+02 0.0063 20.0 8.4 27 126-152 2-31 (64)
348 PRK02047 hypothetical protein; 22.9 4.1E+02 0.0088 21.5 6.9 65 36-106 16-84 (91)
349 cd07247 SgaA_N_like N-terminal 22.4 3E+02 0.0065 21.9 6.3 51 257-313 60-110 (114)
350 cd04918 ACT_AK1-AT_2 ACT domai 22.4 3.2E+02 0.007 20.0 8.9 35 261-295 3-39 (65)
351 PRK14631 hypothetical protein; 21.8 6.2E+02 0.013 23.1 9.1 62 351-413 11-88 (174)
352 PF02576 DUF150: Uncharacteris 21.4 3.7E+02 0.008 23.4 6.9 56 354-412 2-57 (141)
353 cd08359 Glo_EDI_BRP_like_22 Th 21.0 2.5E+02 0.0054 22.6 5.5 50 35-90 66-115 (119)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.9e-28 Score=273.26 Aligned_cols=164 Identities=23% Similarity=0.408 Sum_probs=148.6
Q ss_pred CCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHH
Q 044728 243 GRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQR 321 (450)
Q Consensus 243 ~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ 321 (450)
...+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|++++|.++. ++++++
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 3457889999999999999999999999999999999999999999999998 69999999999999999885 458899
Q ss_pred HHHHHHHHHhcc--------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728 322 VINCLEAAIKRR--------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR 373 (450)
Q Consensus 322 l~~~L~~~L~~r--------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~ 373 (450)
|++.|.++|..+ . ...|+|||.|.|||||||+|+++|.++|++|++|||+|+
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 999999887421 0 024899999999999999999999999999999999999
Q ss_pred CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728 374 GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI 407 (450)
Q Consensus 374 g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~ 407 (450)
|++|+|+|||++.+|.|++++++++|+++|++++
T Consensus 820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999776699999998754
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=5.8e-28 Score=270.25 Aligned_cols=163 Identities=26% Similarity=0.416 Sum_probs=148.7
Q ss_pred CCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHH
Q 044728 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVI 323 (450)
Q Consensus 245 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~ 323 (450)
.+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||++|+|+|. +|+++|+|+|++.+|.++. ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 678899999999999999999999999999999999999999999999987 6799999999999999885 45889999
Q ss_pred HHHHHHHhcc---------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728 324 NCLEAAIKRR---------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG 374 (450)
Q Consensus 324 ~~L~~~L~~r---------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g 374 (450)
+.|.++|..+ . +..|+|||.|.|||||||+|+++|+++|++|++|||+|+|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999888422 0 1248999999999999999999999999999999999999
Q ss_pred ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728 375 SQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL 408 (450)
Q Consensus 375 ~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l 408 (450)
++|+|+|||++.+|.|++++.+++|+++|++++-
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999997788999999998663
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=7.8e-26 Score=252.36 Aligned_cols=174 Identities=26% Similarity=0.345 Sum_probs=148.0
Q ss_pred CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728 21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI 99 (450)
Q Consensus 21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i 99 (450)
..+|.|.+++..+.++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|.+.+|.++.+ +.+++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~-~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEF-DRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCH-HHHHHH
Confidence 357899999999999999999999999999999999999999999999987 899999999999999998853 455555
Q ss_pred HH----HhCcCccCCC-----------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728 100 QQ----SLGPRARSFR-----------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN 162 (450)
Q Consensus 100 ~~----~L~~~~~~~~-----------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~ 162 (450)
++ +|.+...... ..+.+| +++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|.|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 54 4543321100 011133 457888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
+++.|+|||++ .+|.+++++++ +.|+++|.++|
T Consensus 821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999 68999977666 99999998776
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=9.7e-26 Score=252.40 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=149.3
Q ss_pred CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHH----
Q 044728 22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVS---- 96 (450)
Q Consensus 22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~---- 96 (450)
.+|.|.+++..++++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|.+.+|.++++ +.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence 57899999999999999999999999999999999999999999999987 678999999999999998853 344
Q ss_pred HHHHHHhCcCccCC------C------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728 97 ERIQQSLGPRARSF------R------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN 162 (450)
Q Consensus 97 ~~i~~~L~~~~~~~------~------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~ 162 (450)
+.|+++|.+..... + ..+.+| +++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 44455554432110 0 011123 457888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhc
Q 044728 163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKG 199 (450)
Q Consensus 163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~ 199 (450)
+++.|+|||++ ..|.+++ +++.+.|+++|..+|..
T Consensus 846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999 6889886 77889999999998864
No 5
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-26 Score=241.37 Aligned_cols=165 Identities=28% Similarity=0.412 Sum_probs=148.0
Q ss_pred CCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHH
Q 044728 244 RSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRV 322 (450)
Q Consensus 244 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l 322 (450)
.++|.|.+...+..+.|+|+|+++|+|.||+.++.++...|+||++|+|+|+ +|+++|+|+|.+++|.++++ ++...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~-dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEE-DRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccch-hHHHHH
Confidence 5678898888888899999999999999999999999999999999999985 89999999999999999884 477888
Q ss_pred HHHHHHHHhc---------cC----------C----------CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728 323 INCLEAAIKR---------RT----------S----------EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR 373 (450)
Q Consensus 323 ~~~L~~~L~~---------r~----------~----------~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~ 373 (450)
+..|.+++.. +. | +.|+|||++.||||||++|+++|++++++|++|||+|+
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 8888777621 10 1 24899999999999999999999999999999999999
Q ss_pred CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccc
Q 044728 374 GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILR 409 (450)
Q Consensus 374 g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~ 409 (450)
||+|+|+|||++..|.+++++.++.+.+.+.++++.
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888888999988886653
No 6
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=250.46 Aligned_cols=179 Identities=22% Similarity=0.349 Sum_probs=149.4
Q ss_pred CCCCEEEEeecCC---CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCC-chHH
Q 044728 21 MNPPRVTVDNTSN---RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLS-EDDV 95 (450)
Q Consensus 21 ~~~p~V~i~~~~~---~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~-~~~~ 95 (450)
...|.|.+++... +++++|+|+++||||||++||++|..+|+||++|+|+| .+|+++|+|+|++++|.++. ++++
T Consensus 686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r 765 (895)
T PRK00275 686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPAR 765 (895)
T ss_pred CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHH
Confidence 3468888888776 58999999999999999999999999999999999986 78999999999999999854 3345
Q ss_pred HHHHHHH----hCcCccCC-------------CCcceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEE
Q 044728 96 SERIQQS----LGPRARSF-------------RSLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGA 156 (450)
Q Consensus 96 ~~~i~~~----L~~~~~~~-------------~~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A 156 (450)
+++|++. |.+..... ...+..| .++.+.++|+|+|+++||||||++|+++|+.+|+||++|
T Consensus 766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A 845 (895)
T PRK00275 766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845 (895)
T ss_pred HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence 5555554 44332100 0011123 346778999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhcc
Q 044728 157 EVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGD 200 (450)
Q Consensus 157 ~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~ 200 (450)
+|+|.|+++.|+|+|++ .+|.++.+++++++|+++|.++|.++
T Consensus 846 kI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 846 KIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999 68999988889999999999999753
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=2.7e-25 Score=249.24 Aligned_cols=165 Identities=26% Similarity=0.377 Sum_probs=149.0
Q ss_pred CCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHHH
Q 044728 244 RSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQRV 322 (450)
Q Consensus 244 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l 322 (450)
...|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++.+|.++.+++++++|
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 356888888877799999999999999999999999999999999999995 5899999999999999988877789999
Q ss_pred HHHHHHHHhcc------------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728 323 INCLEAAIKRR------------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 323 ~~~L~~~L~~r------------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
++.|.++|..+ . +..|+|+|.+.|||||||+|+++|+++|++|++|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 99998887321 0 014899999999999999999999999999999999
Q ss_pred eecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728 371 TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL 408 (450)
Q Consensus 371 ~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l 408 (450)
+|+|++++|+|||++..|.|+++++++.|+++|+++++
T Consensus 813 ~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~ 850 (850)
T TIGR01693 813 TTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA 850 (850)
T ss_pred EecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998888999999988653
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1e-24 Score=244.25 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=157.0
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCC-CHHHHHHHHHHHHHhhhcc
Q 044728 123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPID-DPDTLAKIKRLLLYVLKGD 200 (450)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~-~~~~~~~l~~~L~~~l~~~ 200 (450)
.+.++|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.++
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999875 789999999999 5788753 4589999999999999986
Q ss_pred ccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHH
Q 044728 201 RDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTL 280 (450)
Q Consensus 201 ~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L 280 (450)
.+.. ... .+|..... + ....+|.|.+++..+.++|+|+|+++||||||++|+++|
T Consensus 781 ~~~~-~~~---------~~~~~~~~---~------------~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L 835 (895)
T PRK00275 781 DDYP-TII---------QRRVPRQL---K------------HFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF 835 (895)
T ss_pred Cccc-hhh---------hhhhhhhc---c------------CCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence 6421 111 11211110 1 123479999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 044728 281 TDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK 331 (450)
Q Consensus 281 ~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~ 331 (450)
+.+|+||++|+|.|.+|+++|+|+|++.+|.++.+++++++|+++|.++|.
T Consensus 836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998887789999999998884
No 9
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=6.3e-24 Score=236.55 Aligned_cols=176 Identities=23% Similarity=0.275 Sum_probs=144.9
Q ss_pred CCCCEEEEee-cCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCc-hHHHH
Q 044728 21 MNPPRVTVDN-TSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSE-DDVSE 97 (450)
Q Consensus 21 ~~~p~V~i~~-~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~ 97 (450)
...|.|.+.. .+.+++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+... .++.+
T Consensus 674 ~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~ 753 (869)
T PRK04374 674 IGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAA 753 (869)
T ss_pred CCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHH
Confidence 3467787765 77789999999999999999999999999999999999997 889999999999998864222 23555
Q ss_pred HHHHHhCcCccC-CC------------Ccceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728 98 RIQQSLGPRARS-FR------------SLRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN 162 (450)
Q Consensus 98 ~i~~~L~~~~~~-~~------------~~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~ 162 (450)
.|+++|.+.... .+ ..+.+|. ++.+.+.|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|
T Consensus 754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g 833 (869)
T PRK04374 754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFG 833 (869)
T ss_pred HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecC
Confidence 666667653210 00 0111343 46778899999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
+++.|+|+|++ .+|.++.++++ +.|+++|.++|.
T Consensus 834 ~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 834 ERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred CEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999 68888866666 999999988874
No 10
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=4.6e-24 Score=236.04 Aligned_cols=154 Identities=27% Similarity=0.376 Sum_probs=135.4
Q ss_pred CCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHH
Q 044728 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVIN 324 (450)
Q Consensus 245 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~ 324 (450)
.++.|.+.+.. .+.++|+|+++||||||++|+++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+. .++++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence 46788888888 899999999999999999999999999999999999999999999999999888754 3566777
Q ss_pred HHHHHHhc----------c--C----------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728 325 CLEAAIKR----------R--T----------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 325 ~L~~~L~~----------r--~----------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
.|.++|.. + . ...|+|+|.+.||||||++|+++|+++|+||++|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 77665521 1 0 013899999999999999999999999999999999
Q ss_pred eecCceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728 371 TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIG 404 (450)
Q Consensus 371 ~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~ 404 (450)
.|.|++++|+|||++.+|.++++. +++|+++|+
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999876 778887775
No 11
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=6.5e-24 Score=236.82 Aligned_cols=173 Identities=17% Similarity=0.252 Sum_probs=141.8
Q ss_pred CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728 21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI 99 (450)
Q Consensus 21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i 99 (450)
...|.|.+++.+.++.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ...++.+++|
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i 741 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV 741 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence 357888899999999999999999999999999999999999999999986 88999999999998877 3344455555
Q ss_pred ----HHHhCcCccCC----CC---------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 100 ----QQSLGPRARSF----RS---------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 100 ----~~~L~~~~~~~----~~---------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
+++|.+..... .. .+..|. ++...+.|+|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 45554432100 00 111233 466778999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 161 HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 161 ~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
.++++.|+|+|++. ++.+++++++|++.|.++|.
T Consensus 822 ~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 LGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999652 24577899999999988764
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=234.56 Aligned_cols=181 Identities=23% Similarity=0.248 Sum_probs=152.2
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
.+..+.+.|.|+++|+||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +.|.+ ++++++|++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence 566789999999999999999999999999999999999984 899999999999 46653 3578889999999999
Q ss_pred ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHH
Q 044728 199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVC 278 (450)
Q Consensus 199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~ 278 (450)
|+.+... . .+|.+.. ..+ .+..+|.|.+++..+.++|+|+|+++||||||++|++
T Consensus 761 ~~~~~~~----~-------~~~~~~~--~~~------------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~ 815 (869)
T PRK04374 761 GDLQKVR----P-------ARRAVPR--QLR------------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH 815 (869)
T ss_pred CCCCccc----c-------ccccCcc--ccc------------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence 8653210 1 1110000 001 2345799999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 279 TLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 279 ~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
+|+.+|+||++|+|.|.+|+++|+|+|++.+|.++.++++ +.|+++|.++|
T Consensus 816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l 866 (869)
T PRK04374 816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL 866 (869)
T ss_pred HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 9999999999999999999999999999999998776644 89999998876
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.4e-23 Score=232.24 Aligned_cols=169 Identities=24% Similarity=0.275 Sum_probs=143.0
Q ss_pred CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 044728 22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQ 101 (450)
Q Consensus 22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~ 101 (450)
.+|.|.+++.. ++.++|+|+++||||||++||++|..+||||++|+|+|.+|+++|+|+|.++.|.+...+++.+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 67899999888 99999999999999999999999999999999999999999999999999998886655557778888
Q ss_pred HhCcCccC--C---C------C------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728 102 SLGPRARS--F---R------S------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN 162 (450)
Q Consensus 102 ~L~~~~~~--~---~------~------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~ 162 (450)
+|.+.... . . . .+..|. ++...+.|+|+|.++||||||++|+++|+++|+||++|+|+|.|
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 88764210 0 0 0 011233 35666789999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
+++.|+|+|++ .+|.+++++ ++.|+++|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 689988654 677777663
No 14
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.3e-23 Score=235.18 Aligned_cols=179 Identities=28% Similarity=0.363 Sum_probs=151.8
Q ss_pred CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHH
Q 044728 22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQ 100 (450)
Q Consensus 22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~ 100 (450)
.++.|.+++..++++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|++++|.++.+++.+++|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 55788899999999999999999999999999999999999999999987 78999999999999998776666666665
Q ss_pred HHh----CcCccCC-----C-Cc-----------ceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 044728 101 QSL----GPRARSF-----R-SL-----------RRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW 159 (450)
Q Consensus 101 ~~L----~~~~~~~-----~-~~-----------~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 159 (450)
+.| .+...+. . .+ ...++++.+.+.|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 554 3221100 0 01 1123346777899999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhccc
Q 044728 160 THNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDR 201 (450)
Q Consensus 160 t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~~ 201 (450)
|.++++.|+|+|++ .+|.++.++++++.|+++|.++|.++.
T Consensus 878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999 689999888899999999999997643
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-23 Score=223.78 Aligned_cols=175 Identities=22% Similarity=0.295 Sum_probs=142.7
Q ss_pred CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728 21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI 99 (450)
Q Consensus 21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i 99 (450)
..+|+|.++..++.+.++|+||+||+|.||+.+|.++...|+||++|+|+| .+||++|+|+|.+++|.++..+ +...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~d-r~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEED-RRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchh-HHHHH
Confidence 467999999999999999999999999999999999999999999999986 8899999999999999988743 44444
Q ss_pred HHHhC----cCccCCCC------------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728 100 QQSLG----PRARSFRS------------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH 161 (450)
Q Consensus 100 ~~~L~----~~~~~~~~------------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~ 161 (450)
+..|. .....++. .+..|. ++.....|+++|.+.||||||+.++++|+++|++|++|+|+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 44332 22111110 111233 3667789999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 162 NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 162 ~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
|++++|+|+|++ ..|.++. ++..+.+.+.|.+++.
T Consensus 828 GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 828 GERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhc
Confidence 999999999999 6898884 4455666666655554
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.91 E-value=2.3e-23 Score=233.69 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=147.9
Q ss_pred CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728 21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS-SDGEWFMDVFHVTDQNGNKLSEDDVSERI 99 (450)
Q Consensus 21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~i 99 (450)
...|.|.+++....++++|+|+++||||||++|+++|..+|+||++|+|+ |.+|+++|+|+|.+.+|.++.+++.+++|
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 35789999987778999999999999999999999999999999999998 58999999999999999988776555555
Q ss_pred H----HHhCcCccCC-----C----------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044728 100 Q----QSLGPRARSF-----R----------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 100 ~----~~L~~~~~~~-----~----------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
+ ++|.+..... . ..+.+| +++.+..+|+|+|.|.||||||++|+++|+++|+||++|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 5 4554422100 0 011123 45788889999999999999999999999999999999999
Q ss_pred EeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 159 WTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 159 ~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
.|.++++.|+|+|++ ..|.++++ ++++.|+++|.++|
T Consensus 813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999 58888876 78899999998765
No 17
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=4.6e-23 Score=230.04 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=150.0
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
.+..+.+.|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +.|. ..+++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHHc
Confidence 566789999999999999999999999999999999999875 899999999999 4565 4467899999999999999
Q ss_pred ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHH
Q 044728 199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVC 278 (450)
Q Consensus 199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~ 278 (450)
++.+.. .+ +.+| ... ..+ .+..++.|.+++..+.++|+|+|+++||||||++|++
T Consensus 751 ~~~~~~-~~---------~~~~-~~~--~~~------------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~ 805 (856)
T PRK03059 751 EQAPLP-EP---------SKGR-LSR--QVK------------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR 805 (856)
T ss_pred CCCCcc-hh---------hccc-ccc--ccc------------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence 865321 00 0111 010 001 2335789999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 279 TLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 279 ~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
+|+.+|+||++|+|+|.+|+++|+|+|.+.. ..+++++++|++.|.++|
T Consensus 806 ~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 806 VLAEHRVSVHTAKINTLGERVEDTFLIDGSG---LSDNRLQIQLETELLDAL 854 (856)
T ss_pred HHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---CCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999996433 445568999999998876
No 18
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=1.3e-22 Score=229.16 Aligned_cols=190 Identities=24% Similarity=0.391 Sum_probs=160.6
Q ss_pred ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 119 VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 119 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
..+..+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|++ ..|.++.+++++++|++.|.+++
T Consensus 726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999998 5889999999999 57887777889999999999999
Q ss_pred hccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHH
Q 044728 198 KGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAV 277 (450)
Q Consensus 198 ~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~ 277 (450)
.++.+.. ..+ .+|.... .. ...+..+|.|.++|..+.++|+|.|+++||||||++|+
T Consensus 805 ~~~~~~~---~~~-------~~r~~~~----~~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~ 861 (931)
T PRK05092 805 SGEVRLP---EAL-------AKRTKPK----KR---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLT 861 (931)
T ss_pred cCCCCCc---ccc-------ccccCcc----cc---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHH
Confidence 8765331 111 1110000 00 01233579999999999999999999999999999999
Q ss_pred HHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044728 278 CTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR 332 (450)
Q Consensus 278 ~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~ 332 (450)
++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.+++.++.|+++|.++|..
T Consensus 862 ~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 862 RALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred HHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988877889999999998853
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=6.2e-20 Score=143.83 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=67.2
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChH-HHHHHHHHHhhcccc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSE-TIESVRKEIGLTILR 409 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~-~~~~L~~~l~~~~l~ 409 (450)
|+|||.++|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|.|+.++ ++++|+++|.+++=+
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999999999999999999864 778999999886533
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=9.6e-20 Score=141.73 Aligned_cols=69 Identities=22% Similarity=0.416 Sum_probs=64.8
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKS-ETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~-~~~~~L~~~l~~ 405 (450)
.|+|||.++|||||||+|+++|+++|++|++|||+|+|++++|+|||++.+|.|+++ +.+++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 379999999999999999999999999999999999999999999999999999976 577899998864
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=7.4e-19 Score=137.73 Aligned_cols=71 Identities=18% Similarity=0.425 Sum_probs=65.8
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHhhcccc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT--TRGSQAVNVFYVVDASGNPVKS-ETIESVRKEIGLTILR 409 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~--T~g~~a~D~F~v~~~~g~~l~~-~~~~~L~~~l~~~~l~ 409 (450)
|+|||.+.|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|.++++ ++++.|+++|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999999 888999876 5789999999987653
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.73 E-value=3.9e-17 Score=128.03 Aligned_cols=75 Identities=68% Similarity=1.153 Sum_probs=71.4
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR 333 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r 333 (450)
+|+|+|.|+||||||++|+++|+++|++|.+|+|.|.++++.|+|||++.+|.++.++++.++|+++|.++|.+|
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999999999998888999999999988764
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=4.4e-16 Score=121.19 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 68999998989899988874
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.66 E-value=1.1e-15 Score=141.44 Aligned_cols=141 Identities=11% Similarity=0.153 Sum_probs=110.8
Q ss_pred CCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh----
Q 044728 256 DKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK---- 331 (450)
Q Consensus 256 ~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~---- 331 (450)
...+.+|+++|+||||++++++++|+++||||.+.+....+|++.-++.|. +.+ ...++|+..|...-.
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence 346789999999999999999999999999999999999999998888884 222 256778887754321
Q ss_pred ----ccC--------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc--eeeeEEEEEeCCCCCCChHHHH
Q 044728 332 ----RRT--------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS--QAVNVFYVVDASGNPVKSETIE 397 (450)
Q Consensus 332 ----~r~--------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~--~a~D~F~v~~~~g~~l~~~~~~ 397 (450)
++. +.++.++|.+.|||||+++||++|+++|+||...+..|++. ...+.|.+.-...-|.+ ...+
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence 121 12389999999999999999999999999999999999995 67788877666555543 2234
Q ss_pred HHHHHHh
Q 044728 398 SVRKEIG 404 (450)
Q Consensus 398 ~L~~~l~ 404 (450)
.|+++|.
T Consensus 157 ~L~~~l~ 163 (190)
T PRK11589 157 NIEQAFK 163 (190)
T ss_pred HHHHHHH
Confidence 4444444
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2e-15 Score=118.36 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=67.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhc
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW--THNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKG 199 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~ 199 (450)
|+++|.++||||||++|+++|+++|++|++|+|. |.|+++.|+|+| + ..|.++.++++++.|+++|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 999999999999 6 5788898999999999999988753
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=9.7e-15 Score=115.10 Aligned_cols=73 Identities=63% Similarity=1.017 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCC-CCCCCCHHHHHHHHHHHHHhhhc
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEAT-GLPIDDPDTLAKIKRLLLYVLKG 199 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~-g~~i~~~~~~~~l~~~L~~~l~~ 199 (450)
|+|+|.++||||||++|+++|+.+|+||++|+++|.++++.|+|+|++ .+ |.++.+++++++|++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999999 45 77787888999999999988864
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.2e-14 Score=114.27 Aligned_cols=71 Identities=25% Similarity=0.405 Sum_probs=65.4
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
++|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|++++|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999998 79999999999999988877778999999997753
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.4e-14 Score=114.18 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=66.7
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCC-CCCCCcHHHHHHHHHHHHHHHh
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVD-GNPISSEAERQRVINCLEAAIK 331 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~~L~ 331 (450)
|+|+|+++||||||++++++|+++|+||++|+|.|.+|+++|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999987 7777777789999999988763
No 29
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=6e-14 Score=111.15 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=63.3
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK 331 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~ 331 (450)
.++|+++||||||++++++|+++|+||++|+|.| .+|+++|+|+|++++|. ..+++++++++++|.++|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999997 68999999999998777 4455689999999988874
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=5.2e-14 Score=110.57 Aligned_cols=71 Identities=27% Similarity=0.469 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
+.|+|+++||||||++++++|+.+|+||++|+|+|. +|++.|+|+|++ ..|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 699999999999 57888877889999999998764
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=8.8e-14 Score=110.19 Aligned_cols=68 Identities=29% Similarity=0.479 Sum_probs=60.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT-RGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T-~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
++||.+.||||||++|+++|+++|+||..|+|.| .++++.|+|||++..|...++++.++++++|.++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~ 70 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV 70 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999996 8999999999999977744446777888888764
No 32
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.49 E-value=1.8e-13 Score=105.28 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=56.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHh
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSL 103 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L 103 (450)
.+|+|+++||||||++++++|..+|+||++|+|+| .+|+++|+|+|.+.+|. .+..+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence 58999999999999999999999999999999986 78999999999999887 3344555666554
No 33
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.49 E-value=7e-13 Score=122.88 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=106.6
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc---CC
Q 044728 34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR---SF 110 (450)
Q Consensus 34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~---~~ 110 (450)
..+.+|+|+++||||+.+.++++|+++||||.+.+++..+|++.-++.| .+. |.....++..|..... +.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~----~~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS----WNAITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC----hhHHHHHHHHHHhhhhhcCeE
Confidence 4678999999999999999999999999999999999988887766666 222 3356677777755431 11
Q ss_pred CCcceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC------eEEEEEEEeecCCCCCCCC
Q 044728 111 RSLRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS------RMASVVYITSEATGLPIDD 182 (450)
Q Consensus 111 ~~~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~------~~~d~f~V~~~~~g~~i~~ 182 (450)
...++.-. -......+.++|.+.||||+++.+|++|+++|+||.+-+..|.+. .....|.+.-+ .+.
T Consensus 79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~---- 153 (190)
T PRK11589 79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ---- 153 (190)
T ss_pred EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC----
Confidence 11111000 011222589999999999999999999999999999998888653 23444455542 222
Q ss_pred HHHHHHHHHHHHHhhh
Q 044728 183 PDTLAKIKRLLLYVLK 198 (450)
Q Consensus 183 ~~~~~~l~~~L~~~l~ 198 (450)
..+.|+++|.+...
T Consensus 154 --~~~~L~~~l~~l~~ 167 (190)
T PRK11589 154 --DAANIEQAFKALCT 167 (190)
T ss_pred --CHHHHHHHHHHHHH
Confidence 24667777765444
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.45 E-value=3.4e-13 Score=119.86 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=113.9
Q ss_pred CceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh-----
Q 044728 257 KGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK----- 331 (450)
Q Consensus 257 ~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~----- 331 (450)
.+|++|++++.||||+...+++...++||||+++|+...++.+..+..|. |. ++...+|+..|...=+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCeE
Confidence 46789999999999999999999999999999999999999888777776 33 3477888888854211
Q ss_pred ---ccC--------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHH
Q 044728 332 ---RRT--------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ--AVNVFYVVDASGNPVKSETIES 398 (450)
Q Consensus 332 ---~r~--------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~--a~D~F~v~~~~g~~l~~~~~~~ 398 (450)
.|. +..+.++|.+.|||||+.+||++|.++||||++....|+... ..-.|+++-.-+.|.+ -....
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence 121 125899999999999999999999999999999999998643 6778999777777776 34456
Q ss_pred HHHHHhh
Q 044728 399 VRKEIGL 405 (450)
Q Consensus 399 L~~~l~~ 405 (450)
|+++|++
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 6665553
No 35
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=142.07 Aligned_cols=132 Identities=14% Similarity=0.220 Sum_probs=108.5
Q ss_pred EEEEEEe-cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-----
Q 044728 260 TVVNLRC-PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR----- 333 (450)
Q Consensus 260 t~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r----- 333 (450)
-.++|.. +|+||++.+++++|+.+|++|.+|++.+ +|.+...|.|....|.+.++. .+++.+...+.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 621 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQ----EFLQAYKSGVYSELPDPA 621 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChH----HHHHHHHHhhcCCCCccc
Confidence 3678888 9999999999999999999999999999 888899999999889888665 4444444444322
Q ss_pred --CCC----ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728 334 --TSE----GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI 407 (450)
Q Consensus 334 --~~~----~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~ 407 (450)
.|+ .+++||++.||||+|+.|+++|. +|.+|+++|.|..++|+||+.. +..+.++.+++..++
T Consensus 622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~~ 690 (693)
T PRK00227 622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-------GFDRATVERDVTRVL 690 (693)
T ss_pred CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-------cccHHHHHHHHHHHH
Confidence 122 47999999999999999999999 9999999999999999999971 123567777776654
No 36
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.43 E-value=1.1e-12 Score=100.90 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
.+|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++.+|. ..+.|+++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 479999999999999999999999999999999975 8999999999998775 2345666665544
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.1e-11 Score=95.53 Aligned_cols=68 Identities=31% Similarity=0.574 Sum_probs=62.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCc
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGP 105 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~ 105 (450)
++|+|+++||||+|++|+++|.++|+||+.|.++|.+++++|+|+|.+++|.++ +.+.+++|+++|..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999988889999999999998877 56788999999864
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.4e-11 Score=95.21 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=60.9
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLE 327 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 327 (450)
+.|+|+++||||+|++++++|+.+|+||.+|++.|.+++++|+|+|.++++.+. +++++++++++|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 579999999999999999999999999999999998889999999999988877 5568888888774
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.24 E-value=3.1e-10 Score=123.77 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=118.3
Q ss_pred eEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhccccc
Q 044728 125 HTTIELTG-RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDK 203 (450)
Q Consensus 125 ~t~i~v~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~~d~ 203 (450)
...++|.. +|++|+|++++++|+.+|++|++|++.+ +|.+...|.|.+ ..|.+. ++ ..+++.+..++.|+.+.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence 36788888 9999999999999999999999999999 889999999999 577765 45 66888888888887643
Q ss_pred cccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhC
Q 044728 204 RSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDM 283 (450)
Q Consensus 204 ~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~ 283 (450)
. . ..+|.+.|.. ++++|.+.||||+++.++++|.
T Consensus 620 ~---------------------------~-----------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~-- 653 (693)
T PRK00227 620 P---------------------------A-----------PGITATFWHG------NILEVRTEDRRGALGALLGVLP-- 653 (693)
T ss_pred c---------------------------c-----------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh--
Confidence 1 0 1246666653 6899999999999999999999
Q ss_pred CceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 284 QYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 284 glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
+|..|++.|.|..++|.|++.+. ..+.+++.++..+|
T Consensus 654 --~~~~~~~~~~g~~~~~~~~~~~~--------~~r~~~~~~~~~~~ 690 (693)
T PRK00227 654 --DLLWITASTPGATMIVQAALKPG--------FDRATVERDVTRVL 690 (693)
T ss_pred --hhhhHhhcCCCcceEEEEEecCc--------ccHHHHHHHHHHHH
Confidence 89999999999999999999821 13566777766654
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.21 E-value=1.3e-10 Score=89.93 Aligned_cols=69 Identities=45% Similarity=0.734 Sum_probs=63.3
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
|.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+++..++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999889999999999999986656778899988764
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=1.8e-10 Score=89.09 Aligned_cols=69 Identities=26% Similarity=0.440 Sum_probs=62.9
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA 329 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 329 (450)
|.+.|+++|+||+|++++++|+.+|++|.++++.+.++.+.|+|++.+++|.+. +.++++++++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999998889999999999988884 556899999998765
No 42
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.07 E-value=9.5e-10 Score=98.06 Aligned_cols=154 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc---CC
Q 044728 34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR---SF 110 (450)
Q Consensus 34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~---~~ 110 (450)
..+.+|+++++||||+...+++...+.||||.+.++...++.+.-+..| .|. |+-..+++.+|..... +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence 4578999999999999999999999999999999999987766544333 333 6678899999866542 11
Q ss_pred CCcceeee-c-cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHH
Q 044728 111 RSLRRSVG-V-QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTL 186 (450)
Q Consensus 111 ~~~~r~v~-~-~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~ 186 (450)
....|.-. - ......+.+.|.+.||||++.++|.+|..+|+||++-.-.|. .+.....|...- .-+-|. .-..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i 152 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI 152 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence 11111110 1 356678899999999999999999999999999998887774 344555665544 223333 1345
Q ss_pred HHHHHHHHHhh
Q 044728 187 AKIKRLLLYVL 197 (450)
Q Consensus 187 ~~l~~~L~~~l 197 (450)
..|++++++..
T Consensus 153 ~~l~~~f~al~ 163 (176)
T COG2716 153 SALRDAFEALC 163 (176)
T ss_pred HHHHHHHHHHH
Confidence 67777776543
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.88 E-value=2e-08 Score=77.22 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=60.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV 196 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (450)
+.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..+.|++.. ..+... +++++++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998778999999998 455554 567889999988764
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.87 E-value=2.4e-08 Score=76.74 Aligned_cols=69 Identities=35% Similarity=0.688 Sum_probs=60.9
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
+.+.|.+.|+||+|++|+.+|+++|++|.++++.|.+++..++|++..+++.+.++++.+.+++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998889999999999888776556778888887653
No 45
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.73 E-value=1.2e-07 Score=79.36 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=89.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCccee
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRS 116 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~ 116 (450)
-+|+|+..|+||-|+.++..|.+.|+||..-.|.-.+.+-+-..+|.+++ .-.++|.+.. +
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-----------~A~~~Lee~g-F------- 64 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-----------EAHSVLEEAG-F------- 64 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-----------HHHHHHHHCC-c-------
Confidence 58999999999999999999999999999888876666655556653322 3466776654 1
Q ss_pred eeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEee
Q 044728 117 VGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITS 173 (450)
Q Consensus 117 v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~ 173 (450)
.-....++-|...|+||-|+.|+++|.++++|+.+++.++. ...+.-+|.+.+
T Consensus 65 ----~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 65 ----TVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred ----EEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 11225678899999999999999999999999999999986 455666666655
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.64 E-value=3.2e-07 Score=72.54 Aligned_cols=66 Identities=23% Similarity=0.453 Sum_probs=55.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+|++.|+||||+++.++++|+++|+||.+.+..+.++++..++.|+-+ ++..++++++|.++..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999872 3567888888876544
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.61 E-value=4.3e-07 Score=71.81 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=53.3
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA 329 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 329 (450)
+.+|+|.|+||||++++++++|+++|+||.+.+..+.+|.+.-.+.|.-+ ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988888743 34678888888764
No 48
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.38 E-value=1.1e-05 Score=67.65 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=90.9
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC-CCceE
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT-SEGIS 339 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~-~~~t~ 339 (450)
+|.|+..++||-|+.++..|..+|+||..-.|.-+++.-.-.+.|.++ ++.. +.|+++ +-+ ....+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~----~~Lee~--gF~Vr~~dV 71 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAH----SVLEEA--GFTVRETDV 71 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHH----HHHHHC--CcEEEeeeE
Confidence 688999999999999999999999999999998887766655666532 1122 233321 000 12357
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL 408 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l 408 (450)
+-|...|+||-|..|+.+|.++++|+.++..-+. .+.|.-.|.+ +++++..++|.++..
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi 131 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI 131 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999887544 4556655554 234566666666444
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=1.9e-06 Score=63.92 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=54.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcC
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR 106 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~ 106 (450)
++|+|.|||+.||-.++++++.+.|++|..+.++|++.|++-.|+|...... + .-++..+++.|.+.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999998764322 1 12455667766543
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.33 E-value=2.9e-06 Score=64.17 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=39.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEe
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGE--WFMDVFHVTD 84 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g--~~~d~F~V~~ 84 (450)
+.|.|.++||||+|++++++|.++|+||..+.+.+..+ +.+..+.+.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 57899999999999999999999999999999987443 4544444333
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=2.8e-06 Score=66.87 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=53.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
+++|.|+||||+.++++++|+++|+||.+.+..+.++++...|.+.-+ .+. ..+.+++.|....+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888888888888763 221 24667777766554
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=2.8e-06 Score=66.82 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=50.4
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA 328 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 328 (450)
+|+|.|+||||+.++++++|+++|+||.+.+..+.++++.-.|.+.-+.+. ..+.|+++|+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence 378999999999999999999999999999988888888778888755432 24566666654
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.30 E-value=3.7e-06 Score=63.61 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=46.0
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
|.+.|..+||||+|++|+++|+++|+||..+.+.+.++.....|.+...+ ....+++.++|.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-----EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-----GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-----CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999998887433333332221 1344555555543
No 54
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.29 E-value=5.5e-06 Score=65.63 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=48.9
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA 328 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 328 (450)
.+|++.|+||||+.+++++.|+++|+||.+.+..+.+|.+.-.+.+..+ +. ..+.|++.|.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence 5789999999999999999999999999999999988877555555422 11 34566666654
No 55
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.29 E-value=4.9e-06 Score=65.90 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=51.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
.+|++.|+||||+.+.|+++|+++|+||.+.+.++.++++.....+.- + . ...+.|++.|.+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~----~---~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S----W---DAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c----c---ccHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998888876666665 2 1 12467777776533
No 56
>PRK07431 aspartate kinase; Provisional
Probab=98.24 E-value=0.002 Score=70.40 Aligned_cols=258 Identities=14% Similarity=0.209 Sum_probs=148.2
Q ss_pred cCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccC
Q 044728 43 SANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQA 121 (450)
Q Consensus 43 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~ 121 (450)
.++.+|+++++...|.+.|+||.--..+. ..+..--+|.|.+.+- ....+.+++ |..... ... ...
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~-----~~~--i~~ 344 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG-----GAE--VLV 344 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC-----CCc--EEE
Confidence 57899999999999999999999766543 2333222466633211 111122222 211110 001 123
Q ss_pred CCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 122 ALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 122 ~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+...|.+.+. +.||+++++..+|++.|++|.... + ....-.|.|.. +..++..+.|++.+.
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~ 410 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFE 410 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence 456788888885 899999999999999999996555 2 12233344443 223455556666664
Q ss_pred ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEE-ecCCcChHHHHH
Q 044728 199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLR-CPDRPKLLFDAV 277 (450)
Q Consensus 199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~-~~DrpGLl~~i~ 277 (450)
-+... ..+.+++ ...+ ..+.--+. ...+...|++. .+++||+++++.
T Consensus 411 ~~~~~---------------~~~~~~~---~~~~------------~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~if 458 (587)
T PRK07431 411 LEDSQ---------------IEINPTA---SGQD------------EPEVRGVA--LDRNQAQLAIRNVPDRPGMAASIF 458 (587)
T ss_pred cCCcc---------------cccCccc---cCCC------------CCcEEEEE--ccCCEEEEEECCCCCCccHHHHHH
Confidence 32210 0000110 0001 11111111 12234445443 578899999999
Q ss_pred HHHHhCCceEEEEEEEe-cC--CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC--------CCceEEEEeeC-
Q 044728 278 CTLTDMQYVVYHATVIA-ES--PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT--------SEGISLELCCE- 345 (450)
Q Consensus 278 ~~L~~~glnI~~A~I~t-~~--g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~--------~~~t~iev~~~- 345 (450)
..|+++|++|..-.... .+ |..--.|.+... ...++.+.+.+ +.++. ..-..|.+.+.
T Consensus 459 ~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~---------~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~g 528 (587)
T PRK07431 459 GALAEANISVDMIVQSQRCRSDGTRDISFTVPKE---------DREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGAG 528 (587)
T ss_pred HHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH---------HHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECCC
Confidence 99999999998764422 12 233334555431 22233222222 22111 23467888886
Q ss_pred --CCcchHHHHHHHHHHCCceEEEEE
Q 044728 346 --DRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 346 --DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.+||+++++.++|++.||+|....
T Consensus 529 m~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 529 MPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred ccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 889999999999999999997765
No 57
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.7e-05 Score=58.91 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=58.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV 196 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (450)
++|+|.++|+.||=.+|++++.+.|++|..+.+.|.|..+--+|+|... . ..+ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999873 2 223 35899999998764
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=1.2e-05 Score=63.06 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=46.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+|.+.++||||++++||++|+++|+||...+..+.. ....|++.-....|-.+...++|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999988742 22357775443333211235666665554
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=2.4e-05 Score=63.42 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=52.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
.++++.|+|+||++++|+++|+++|+||.+.+..+.++++...+.+.-+ +... ..+.|++.|..+..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988887777777752 1011 24677777766443
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=2.7e-05 Score=63.17 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=49.0
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA 328 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 328 (450)
..|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+. ... ..+.|++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~----~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNL----DFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCC----CHHHHHHHHHH
Confidence 36899999999999999999999999999999988888776666666432 011 24556665554
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.89 E-value=8e-05 Score=59.06 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=48.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN------SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~------~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
++++.|+|+||++++|+++|+++|+||.+.+..+.+ +.....+.+.-+ .+ . ...++++.|..+..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l~~ 71 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEELCD 71 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999876 445555555552 11 1 24667777765443
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.89 E-value=8.4e-05 Score=58.91 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=45.8
Q ss_pred EEEEecCCcChHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728 262 VNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES------PEAYQEYYIRHVDGNPISSEAERQRVINCLEA 328 (450)
Q Consensus 262 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 328 (450)
|+|.|+|+||+++++++.|+++|+||.+.+..+.+ +.+.-.+.+.-+.+ . ...+|++.|..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~----~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--T----DLDALREELEE 68 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--C----CHHHHHHHHHH
Confidence 78999999999999999999999999999998865 45554555554422 1 24556665554
No 63
>PRK00194 hypothetical protein; Validated
Probab=97.87 E-value=5.8e-05 Score=61.37 Aligned_cols=48 Identities=4% Similarity=0.045 Sum_probs=41.8
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR 306 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~ 306 (450)
...|+|.|+||||+++++++.|+++|+||.+.+-.+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 468999999999999999999999999999998888877766555554
No 64
>PRK00194 hypothetical protein; Validated
Probab=97.85 E-value=6.5e-05 Score=61.06 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=42.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQ 85 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~ 85 (450)
.+.|+|.|+||||+++.++++|++.|+||.+.+..+.+|.+.-.+.+.-+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999998877776655555433
No 65
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00013 Score=57.12 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=32.7
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE 295 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~ 295 (450)
+|+|.|+||||+++++++.|+++|+||.+.+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 37899999999999999999999999999999874
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.78 E-value=0.00052 Score=68.05 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=67.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS--SDG-EWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS 112 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~-g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~ 112 (450)
...|+|.|+||||+.+.|+++|+++|+||.+.+.+ +.. .+++ .+.+.+.....++-.++.+.++..-.+.. +
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~~~~~l~~~l~~l~~~l~-l--- 83 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAASVDTFRQEFQPVAEKFD-M--- 83 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCCCHHHHHHHHHHHHHHhC-C---
Confidence 46899999999999999999999999999999997 333 3443 22222211112332333333333222111 0
Q ss_pred cceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 113 LRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 113 ~~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
.+..........|-|...-+..-|..|........++..=+-+.+
T Consensus 84 ---~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 84 ---QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred ---eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 111112222334555555556667777777776666655444444
No 67
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.72 E-value=0.00023 Score=56.42 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=49.5
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.|+|.+.||||+|++|++++++.|+||..+.+.+. ++.+.-.|.+.-.+ -+++.++.+.|..
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d-----~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD-----LEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS-----HHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC-----HHHHHHHHHHHHC
Confidence 579999999999999999999999999999999985 46677777775553 3577777777764
No 68
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.71 E-value=0.0011 Score=65.52 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=70.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcce
Q 044728 38 LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD--GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRR 115 (450)
Q Consensus 38 ~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r 115 (450)
.|+|.||||||+.+.++++|++.|+||.+.+.+.. +|++.=.+.+.-+ +..++.+++.+.++.++.....+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l------ 74 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEM------ 74 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCC------
Confidence 58999999999999999999999999999999974 4666534444333 22233343444444423222111
Q ss_pred eeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 116 SVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 116 ~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
.+..........|-|.+.-+-.-|..|......-.+++.=+-+.+
T Consensus 75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 122111122334555555556677777777776666655444444
No 69
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.68 E-value=0.00033 Score=55.51 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+...|.+.-. +.+.++.+.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999984 5677777776652 3456666666654
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.48 E-value=0.0022 Score=63.61 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=64.0
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hh--
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI--AESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IK-- 331 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~-- 331 (450)
..+|+|.|+||||+.+.+++.|+++|+||.+.+.. +..+.+.-.+.+.+...... ..+.|+++|.+. +.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence 45799999999999999999999999999999887 33343332323332211112 245566666543 21
Q ss_pred ---ccCCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEE
Q 044728 332 ---RRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 332 ---~r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
+...+...|-|-+--+..-|.+|-.....-.++.+-+-
T Consensus 85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~ 125 (289)
T PRK13010 85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVG 125 (289)
T ss_pred EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEE
Confidence 11122334444444445556667666666665544433
No 71
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.0014 Score=50.85 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=46.8
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
|.|.+.||||+|++|+.++++.|+||......+.. ..+.-.|.+.-.+ .++++++.+.|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~-----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS-----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC-----HHHHHHHHHHHhc
Confidence 78999999999999999999999999998887653 5566666664443 2456666666654
No 72
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.0015 Score=50.62 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=47.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
|.|.+.|+||+|++|+.++++.|+||.+....+. .+.+...|.+.-. +.++++++.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 6789999999999999999999999999888765 4566666666541 34666777777653
No 73
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00024 Score=57.22 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+|+|.|.||||+.+.++++|+++|+||++..-+-..|.....+.|.-+ .. ......+++.|....+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence 56899999999999999999999999999998776667888888877662 11 1223566666665444
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.39 E-value=0.005 Score=61.07 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=67.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCc
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSL 113 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~ 113 (450)
.+.|+|.|+||||+.+.++++|+++|+||.+.+.++ .++++.-.+.+..+.+. +...+.+.++..-.+.. +
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~l~~~l~-l---- 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAPIAARFG-M---- 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHHHHHHhC-c----
Confidence 468999999999999999999999999999999985 34555444555444442 22323333333222111 0
Q ss_pred ceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 114 RRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 114 ~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
...+.+ ......|.|.+.-+-.-|..|........++..=+-+.+
T Consensus 80 ~i~i~~--~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 80 QWELHD--PAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEEee--cccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 011111 111223444444455566666666666665554444444
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.37 E-value=0.0053 Score=60.94 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=64.1
Q ss_pred ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc---
Q 044728 258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--- 332 (450)
Q Consensus 258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--- 332 (450)
....|+|.|+||||+.++++++|+++|+||.+.+..+ .+|.+.-.+.+.- +..+. ..+.|+++|.+.-..
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999999999998 6775444444432 11111 256677666543211
Q ss_pred -----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEE
Q 044728 333 -----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT 366 (450)
Q Consensus 333 -----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~ 366 (450)
...+...|-|-+--+---|..|-.....-.++.+
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~ 118 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVE 118 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcE
Confidence 1122233333333334455555555555444433
No 76
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.29 E-value=0.0076 Score=59.81 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=40.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEE
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHV 82 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 82 (450)
..+.|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.=.+.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v 54 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF 54 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence 3578999999999999999999999999999999998 66754433443
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.28 E-value=0.0085 Score=59.25 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=67.9
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-----
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR----- 333 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r----- 333 (450)
.|+|.|+||||+.+.+++.|+++|+||.+.+.+.. +|++.=.+.+.-+ +... ..+.|+++|.+++..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999999999999998874 4666545555533 2112 2445666555522111
Q ss_pred ----CCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728 334 ----TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 334 ----~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
..+...|-|-+--+---|.+|-.....-.++.+-+-+
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 1223344444444555677777777776665544433
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.24 E-value=0.0089 Score=59.30 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc----
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR---- 332 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~---- 332 (450)
...|+|.|+||||+.+++++.|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|+++|.+.-..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 3579999999999999999999999999999998754 4555545555434332 245566666543211
Q ss_pred ---c-CCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728 333 ---R-TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 333 ---r-~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
+ ..+...|-|-+--+---|.+|...+..-.++.+-+-+
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v 122 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV 122 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence 1 1122344444444555677777777776665554444
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0034 Score=47.83 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=38.4
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD 385 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~ 385 (450)
..+.|...|+||.|++|++.|+++|+||.+..+.+.++. -+|.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 367889999999999999999999999999998776653 5566544
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0046 Score=46.96 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-----ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-----SQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-----~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
+.|..+|+||+|++|+++|+++|+||.+....... +.+.-.|.+... +.++.+.+.+.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence 46788999999999999999999999988765432 223323333222 124566777777653
No 81
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.05 E-value=0.0007 Score=54.55 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhC
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLG 104 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~ 104 (450)
..+|+|.++||||+.+.++++|+++|.||.+...+--+|++.=.+.|.-+. ...+-..+..+++....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~-~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK-EVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh-HhccHHHHHHHHHHHHH
Confidence 368999999999999999999999999999888877777665444443321 11222334444554443
No 82
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.05 E-value=0.0037 Score=48.78 Aligned_cols=59 Identities=22% Similarity=0.422 Sum_probs=43.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.|+|.+.||+|+|++|+.++++.|+||.+..+.+. +. -.|.+.-. +-+++..|.++|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~-----~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI-----EFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec-----CHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998775 22 22222222 12466677776664
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0058 Score=46.37 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=42.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-----NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
+.|..+|+||+|++|+.+++++|+||.+...... .+.....|.+... +.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998876643 2334444444431 33455666666543
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.03 E-value=0.0051 Score=48.50 Aligned_cols=63 Identities=11% Similarity=0.242 Sum_probs=45.9
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE-eCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVV-DASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~-~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.|.+...|+||+|++|+.+|++.|+||++..+.-..+...-.+-++ ..+ +...++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~-----~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT-----ENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC-----HHHHHHHHHHHhC
Confidence 57899999999999999999999999999998763333322223232 322 3466778777776
No 85
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0046 Score=47.28 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
+.+.+..+|+||.|++|++.|+++|+||.+....... ....-.|.++.. .+.+++.+.|.++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~ 65 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEA 65 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHc
Confidence 4678899999999999999999999999988766652 234445555422 2456777777664
No 86
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.99 E-value=0.0025 Score=46.69 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
+.+...|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999988765 66777777665
No 87
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.98 E-value=0.0043 Score=48.41 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=42.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+. +. ..|.+.- .+.+.+..+.+.|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHh
Confidence 47899999999999999999999999999999775 33 2222222 13456666666654
No 88
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.97 E-value=0.011 Score=48.67 Aligned_cols=83 Identities=7% Similarity=0.127 Sum_probs=54.6
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceE
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGIS 339 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~ 339 (450)
.|.++..|+||+++++++.|++.|+||.+-.+.-+ .....-...+.. + + ...+++.+.|.+.. .+
T Consensus 10 tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~-~~i~Qi~kQL~KLi-------dV 75 (96)
T PRK08178 10 ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----D-QRLEQMISQIEKLE-------DV 75 (96)
T ss_pred EEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----c-hHHHHHHHHHhCCc-------CE
Confidence 48999999999999999999999999999988654 332222222332 1 1 36777777776642 25
Q ss_pred EEEeeCCCcchHHH-HHHH
Q 044728 340 LELCCEDRAGLLSD-VTRI 357 (450)
Q Consensus 340 iev~~~DrpGLL~~-It~~ 357 (450)
++|.-.+...+++. +...
T Consensus 76 ikV~~l~~~~~v~~e~~~~ 94 (96)
T PRK08178 76 LKVRRNQSDPTMFNKIAVF 94 (96)
T ss_pred EEEEECCCchhHHHHHHHH
Confidence 66655544444443 4433
No 89
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.97 E-value=0.0024 Score=46.85 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=39.0
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEe
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVD 385 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~ 385 (450)
+++...|+||.|.+|+..|.++|+||.+..+.+.+ +++.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999987665 66777776644
No 90
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0031 Score=60.67 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=38.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEE
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD--GEWFM 77 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~g~~~ 77 (450)
....++|.|||++|+.+.|++.|++.||||.++..+++ .|+++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF 50 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF 50 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence 45799999999999999999999999999999999972 46554
No 91
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.95 E-value=0.0088 Score=45.22 Aligned_cols=61 Identities=18% Similarity=0.396 Sum_probs=44.7
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-Cc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GS-QAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+.+.+.|+||+|.+|+++|+++|++|.+....+. ++ .+.-.|.+ +.. + .+.+++.+.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EGD----D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-ECC----H-HHHHHHHHHHhC
Confidence 57889999999999999999999999999998775 33 33333433 221 2 456666676664
No 92
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.93 E-value=0.0038 Score=57.19 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=45.9
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
..+.|.+.|+||+|++|+.+|+++|+||++..+.+........+.+.-+.+ +...++|+++|.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~----~~~ieqL~kQL~K 66 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGD----DRTIEQLTKQLYK 66 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECC----HHHHHHHHHHHHH
Confidence 478999999999999999999999999999998653333333444443321 2235666666664
No 93
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0038 Score=47.50 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=38.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
..++|..+|+||.|++++.+|+++|+||.+..+...++. .++.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 467889999999999999999999999999998776553 5555543
No 94
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.90 E-value=0.0058 Score=50.17 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=49.5
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
..+|.+...|+||+|++|+..|++.|+||++..+.-.+....-.+.+.-.+ +..++++.+.|.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-----DQRLEQMISQIEK 71 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-----chHHHHHHHHHhC
Confidence 478999999999999999999999999999998875554443344443321 3567888888876
No 95
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.0076 Score=46.76 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=46.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHH-HHHHHHHHHHH
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPD-TLAKIKRLLLY 195 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~-~~~~l~~~L~~ 195 (450)
.+.+.+.|+||++++|+++|+++|+||......+. ++.+.-.|.+... +.+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 57899999999999999999999999999877553 3556666666541 223 56667666653
No 96
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0095 Score=46.21 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=46.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+.+.+.||||+|++|++.++++|+||......+.. +.+.=.|.+...+- +.+++++.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~----~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM----NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch----HHHHHHHHHHHhc
Confidence 578999999999999999999999999998875533 44555566643320 1256677777664
No 97
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0093 Score=45.98 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=44.2
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.|.+.+.|+||+|.+|+++|+++|++|+.....+.. +.+.=.| ++.. .+..+.+++.+.|.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i-~~~~----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVI-VTHE----TSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEE-EEcc----CCHHHHHHHHHHHHc
Confidence 4688999999999999999999999999999876543 3333233 3222 123455666666654
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.78 E-value=0.0071 Score=48.45 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+|.+...|+||+|++|+..|++.|+||.+..+........-.+-+.-..| ++...+++.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence 368899999999999999999999999999998755444444443433211 13466788887776
No 99
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.75 E-value=0.0098 Score=54.51 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=48.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+.+.+.|+||+|++|+++|+.+|+||.+-.+... .+...-++.+.. ++...+.|.+.|.+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence 578999999999999999999999999999998652 333333333332 22336788888877654
No 100
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.75 E-value=0.0091 Score=47.09 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=46.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEE-EEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMAS-VVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d-~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
..+.+...|+||.|++|+++|+..|.||.+-.+.- .+....- ++.+.. ++...++|.+.|.+..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999888763 3333333 333222 2456677777776543
No 101
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.015 Score=44.42 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-C-eEEEEEEEe
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-S-RMASVVYIT 172 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~-~~~d~f~V~ 172 (450)
+.+.+..+|+||.|+++++.|+++|+||.+....... + .....|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4678899999999999999999999999988877652 2 333344444
No 102
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.009 Score=57.59 Aligned_cols=66 Identities=12% Similarity=0.343 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728 258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEA 328 (450)
Q Consensus 258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 328 (450)
...++++.|||+||+.+.|++.|+.+|+||.++.-++. .|+++-...... ++.+. ..+.|++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcc----cHHHHHHHHHH
Confidence 45689999999999999999999999999999998863 455443333332 23332 34566666655
No 103
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.70 E-value=0.0073 Score=45.45 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=37.3
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEE
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYV 383 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v 383 (450)
+.+.+.|+||+|++|+++|+++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 455555655
No 104
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.68 E-value=0.012 Score=53.18 Aligned_cols=64 Identities=20% Similarity=0.394 Sum_probs=47.6
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.++.|...|+||.|++|+..|+++|+||++..+...++...-.+.+.-. | ++...++|.++|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~-~---d~~~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV-G---DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999877655333322322221 2 24567888888886
No 105
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.62 E-value=0.018 Score=45.61 Aligned_cols=66 Identities=21% Similarity=0.369 Sum_probs=47.0
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS-QAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.+.+...|+||.|++|...|+++|+||.+......+. ...-.|||... |. ..+.....+-+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence 45778889999999999999999999999998776643 45568888544 33 223344444444443
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.59 E-value=0.016 Score=52.32 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+++...|+||.|++|+++|+.+|+||.+..+.... +...-++.|.. ++...+++.+.|.+...
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence 4688999999999999999999999999998887653 33444455433 24567788888876553
No 107
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.015 Score=44.71 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=42.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
.+.+.+.|+||++++++.+|+++|+||.+....+.. +.+.-.+.+.. . +.+.++.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~-~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------T-SEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------C-CHHHHHHHHHHHH
Confidence 478889999999999999999999999998876542 33443443333 1 3445555555554
No 108
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.56 E-value=0.013 Score=47.01 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=47.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCe-EEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSR-MASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~-~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
..+.+...|+||.|++|+++|+..|+||.+-.+... ... ..-++.+.. | ++..++++.+.|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence 468899999999999999999999999999988654 322 333343331 1 3456677887777644
No 109
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.53 E-value=0.022 Score=42.94 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=43.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-N-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
.+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.-.|.+.. .+ ..++.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHh
Confidence 47788999999999999999999999999988765 3 34444444443 12 44555665554
No 110
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.47 E-value=0.022 Score=51.57 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=49.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
..+++...|+||.|++|+++|+.+|+||.+..+.... +...-++.|.. ++...+++...|.++..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999998876543 34444555543 34567788888876553
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.46 E-value=0.022 Score=51.59 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=46.6
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ--AVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~--a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
..+.|...|+||.|++|+..|+++|+||.+..+....+. ..-+|.+ +.+ +..++++.++|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~~-----~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SGD-----EQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-ECC-----HHHHHHHHHHHhc
Confidence 478999999999999999999999999999987654433 2233333 222 4567888888776
No 112
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.016 Score=43.26 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=31.2
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG 374 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g 374 (450)
++.+..+|+||-|++++.+|+++|+||.+.......
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988765443
No 113
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.39 E-value=0.024 Score=44.78 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=45.9
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.+.+...|+||.|++|+..|+..|.||++..+.-. ++...-++-+ . . +..+++|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhc
Confidence 578999999999999999999999999999998753 3334444444 2 2 3446677777765
No 114
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.022 Score=42.91 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=30.4
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT 372 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T 372 (450)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678999999999999999999999999988765
No 115
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.26 E-value=0.015 Score=43.78 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=38.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITS 173 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~ 173 (450)
+.+.+.|+||++++|+.+|+++|+||.+......+ +...-.|.+.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 67889999999999999999999999999987754 56666666633
No 116
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.19 E-value=0.035 Score=41.95 Aligned_cols=47 Identities=13% Similarity=0.352 Sum_probs=37.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
.+.+.++|+||.|++++..|+++|+||.+....+.+ +...-.|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 49 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG 49 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence 578899999999999999999999999988877653 44444444443
No 117
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.16 E-value=0.044 Score=40.14 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=43.7
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
|.+.+.|+||++.+|+..|.+++++|....+...+ +.+.-.|.+.... ..+...+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD-----LEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence 46789999999999999999999999999988766 3333344443332 2355666666653
No 118
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.15 E-value=0.032 Score=44.03 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
..+.+...|+||.|++++++|+..|.||.+-.+... ++...-++.|.+ + ...+.|.+.|.++.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhcCc
Confidence 578999999999999999999999999999988753 333444454432 2 34566777776543
No 119
>PRK08577 hypothetical protein; Provisional
Probab=96.03 E-value=0.073 Score=46.74 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=53.1
Q ss_pred CEEEEeecCCC--CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-c-CCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728 24 PRVTVDNTSNR--KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-D-GEWFMDVFHVTDQNGNKLSEDDVSERI 99 (450)
Q Consensus 24 p~V~i~~~~~~--~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V~~~~g~~~~~~~~~~~i 99 (450)
-.|.+.+.... ..+.+.|.+.|+||+|++++++|.+.|+||.+....+ . ++.+.-.|.+.-++. +..++.+
T Consensus 42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l 116 (136)
T PRK08577 42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEEL 116 (136)
T ss_pred CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHH
Confidence 35666655444 4789999999999999999999999999999988876 3 455544455543332 1133455
Q ss_pred HHHhCc
Q 044728 100 QQSLGP 105 (450)
Q Consensus 100 ~~~L~~ 105 (450)
.+.|..
T Consensus 117 ~~~L~~ 122 (136)
T PRK08577 117 EEELKK 122 (136)
T ss_pred HHHHHc
Confidence 555543
No 120
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.01 E-value=0.024 Score=43.36 Aligned_cols=44 Identities=30% Similarity=0.492 Sum_probs=35.3
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEee--cCceeeeEEEE
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT--RGSQAVNVFYV 383 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T--~g~~a~D~F~v 383 (450)
+-+...|+||.+++|++.|+++|+||.+..... .++.+.-+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 446889999999999999999999999888654 34556555555
No 121
>PRK08577 hypothetical protein; Provisional
Probab=95.99 E-value=0.056 Score=47.47 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=46.2
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+.+.|.+.|+||+|++|+++|+++|++|.+....+.. +.+.-.|.+.-.+. +.++.++.+.|..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence 57899999999999999999999999999999877654 33333333322221 1345666666654
No 122
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.89 E-value=0.0094 Score=45.30 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=34.9
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYV 383 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v 383 (450)
+-+.+.|+||+|.+|+.+|++.|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555555544544
No 123
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.89 E-value=0.066 Score=40.42 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=31.8
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR 373 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~ 373 (450)
.+.+...|+||.|++|++.|++++++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47789999999999999999999999998887665
No 124
>PRK07431 aspartate kinase; Provisional
Probab=95.87 E-value=3.6 Score=45.05 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=114.5
Q ss_pred CCeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc--
Q 044728 34 RKATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR-- 108 (450)
Q Consensus 34 ~~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~-- 108 (450)
.+...|+|.+. +.+|+++++..+|.+.|++|.-.. + .+..+ +|.|...+ .++..+.|++.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence 46678888874 899999999999999999996444 3 23332 25553322 13466777777743221
Q ss_pred -CCCC----cceeee-ccCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe-eC--CeEEEEEEEeecCCCC
Q 044728 109 -SFRS----LRRSVG-VQAALEHTTIELT-GRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HN--SRMASVVYITSEATGL 178 (450)
Q Consensus 109 -~~~~----~~r~v~-~~~~~~~t~i~v~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~--~~~~d~f~V~~~~~g~ 178 (450)
..|. ....|. .....+...|++. .++.+|+++++.+.|+++|++|..-.... .+ +...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 1111 000121 2345556666665 46889999999999999999998775432 12 23333455443
Q ss_pred CCCCHHHHHHHHHHHHHhhhccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCc
Q 044728 179 PIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKG 258 (450)
Q Consensus 179 ~i~~~~~~~~l~~~L~~~l~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~ 258 (450)
..+.+....+.+ +..+.+ ...+.+. .+
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------~~~i~~~----~~ 518 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------GAEVEDG----PA 518 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----CC
Confidence 122222222222 221110 0112221 23
Q ss_pred eEEEEEEec---CCcChHHHHHHHHHhCCceEEEEE
Q 044728 259 YTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHAT 291 (450)
Q Consensus 259 ~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~ 291 (450)
...|.|.|. .+||+++++..+|++.|++|+...
T Consensus 519 va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 519 IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 456777775 789999999999999999996554
No 125
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.86 E-value=0.065 Score=41.30 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=41.4
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cce-eeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQ-AVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~-a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.+.-+|+||-|++++..|+++|+||.+...... +.. ..-.+.++... +...++|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-----~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-----RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-----chHHHHHHHHHhC
Confidence 6788999999999999999999999998865544 222 22233332211 1235677777655
No 126
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.85 E-value=0.038 Score=42.25 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=37.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS 173 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~ 173 (450)
+.+...|+||.+++++..|+++|+||.+...... ++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4578999999999999999999999998887653 456666666654
No 127
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.84 E-value=0.021 Score=42.65 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH 161 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~ 161 (450)
+.+..+|+||-|++++.+|+++|+||.+...+..
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 6788899999999999999999999998887554
No 128
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.83 E-value=0.06 Score=41.51 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH 161 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~ 161 (450)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778999999999999999999999998876553
No 129
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.031 Score=42.08 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=36.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS 173 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~ 173 (450)
+.+.+.|+||.+++++..|+++|+||.+...... ++...-.+.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~ 49 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ 49 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence 6788999999999999999999999998887663 344444444444
No 130
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.79 E-value=0.11 Score=41.02 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=39.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
+.+.+..+|+||.|+++...|+++|+||.+....... +...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 4577788999999999999999999999998876653 34556777766
No 131
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.77 E-value=0.072 Score=36.94 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=31.4
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG 374 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g 374 (450)
|.+.+.|+||++++|+++|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987654
No 132
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.75 E-value=0.089 Score=38.47 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=36.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
+.+.+.|+||.++.++..|.+++++|.+..+...+ +.....|.+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 45778999999999999999999999999887655 33444454543
No 133
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.72 E-value=0.014 Score=44.36 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=36.3
Q ss_pred EEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728 262 VNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR 306 (450)
Q Consensus 262 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~ 306 (450)
+.+.+.|+||++++++..|+++|+||......+.+|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 577899999999999999999999998876555556666555554
No 134
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.68 E-value=0.092 Score=40.81 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=45.0
Q ss_pred EEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 341 ELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 341 ev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
-+...|+||-|++|...|+++|+||.+...... +....-.|||.-. |. ..+...+.+.+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~-~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GH-IDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence 345579999999999999999999999976644 3467778989554 43 122444555555554
No 135
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.67 E-value=0.085 Score=40.34 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=42.5
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI 407 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~ 407 (450)
+.+.+..+|+||.|..|+++|+++|+||.+....-. ++...=.|.+...+ .+++.+.|.+..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--------~~~~~~~L~~~G 65 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--------PRPIIEDLRRAG 65 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--------HHHHHHHHHHCC
Confidence 468889999999999999999999999998865432 23344344442211 125666666543
No 136
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.58 E-value=0.08 Score=41.35 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=44.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIG 404 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~ 404 (450)
.|-+...|+||-|++|-..|+.+|||+......... ..-+-.|||.-. | .+...+++-+.|.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~-~---~~~~~~~~l~~L~ 64 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE-V---DRGDLDQLISSLR 64 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE-c---ChHHHHHHHHHHH
Confidence 344556899999999999999999999998877554 446778999544 5 2233444444443
No 137
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.52 E-value=0.089 Score=42.93 Aligned_cols=65 Identities=20% Similarity=0.352 Sum_probs=47.4
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.|-+...|+||-|+++-..|+++|||+.+....... ..-+-.|||.-. |. . +...+++-+.|..
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~-~-~~~~~~~l~~L~~ 80 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK-S-APALDPIIKSLRN 80 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-C-CHHHHHHHHHHHH
Confidence 5666777999999999999999999999999887654 446678999544 54 2 3444444444443
No 138
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.47 E-value=0.057 Score=40.94 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 134 DRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 134 DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
|+||.|.+|+++|...|.||.+..+... ++...-++.+.. . +...+.|.+.|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhccC
Confidence 7899999999999999999999999873 444454554444 1 134566777776543
No 139
>PRK04435 hypothetical protein; Provisional
Probab=95.44 E-value=0.077 Score=47.35 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred EEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCc
Q 044728 27 TVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGP 105 (450)
Q Consensus 27 ~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~ 105 (450)
-+.....+..+.+.+.++|+||+|++|+.+|++.|+||....... .+|.+.-.|.|...+. ...++.|.+.|..
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~ 134 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN 134 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence 344444566789999999999999999999999999999888766 4576665666644321 1245556566544
No 140
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.026 Score=43.87 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=46.8
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cce--eeeEEEEEeCCCCCCC-hHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQ--AVNVFYVVDASGNPVK-SETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~--a~D~F~v~~~~g~~l~-~~~~~~L~~~l~~ 405 (450)
-+|+.+.-||-++|+||-+|..+|+.|.+|.|.-+ +++ .+-.|.+.+..+. ++ ...+.++.+.+..
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~ 72 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTK 72 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHH
Confidence 47899999999999999999999999999999632 344 4455666555433 44 2334555544443
No 141
>PRK04435 hypothetical protein; Provisional
Probab=95.27 E-value=0.16 Score=45.31 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=51.4
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
........|.+...|+||+|++|..+|+++|+||........ ++.+.-.|.+... + . ...++.|.+.|+
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~ 133 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLR 133 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHH
Confidence 346678899999999999999999999999999998876553 4556666666552 1 1 125566666664
No 142
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.18 E-value=0.044 Score=42.65 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=50.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL 197 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l 197 (450)
++++++-||-.|+|+|-+|+..|+-|.+|.|..+ +++-..+|.+.-...+..+..+..-.++.+.+...+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999753 667666664433122333444444466666665544
No 143
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.18 E-value=0.099 Score=39.61 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 346 DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 346 DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
|+||.|.+|+.+|...|+||++..+........-.+.++-. |. +...++|.+.|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhc
Confidence 78999999999999999999999998743332222333222 11 2345667777765
No 144
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.13 E-value=0.11 Score=35.88 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 044728 39 IKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD 72 (450)
Q Consensus 39 V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~ 72 (450)
|.|.++|++|++.+++++|.+.|++|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999998763
No 145
>PRK06635 aspartate kinase; Reviewed
Probab=95.09 E-value=0.51 Score=49.02 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=68.5
Q ss_pred EEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcc
Q 044728 37 TLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLR 114 (450)
Q Consensus 37 ~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~ 114 (450)
..|+|. ..++||.++++..+|.+.|+||.-...+. .+|+..-.|.|...+. +...+.|++.-.... .
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~~~~~~~------~ 331 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEEVKDEIG------A 331 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHHHHHHcC------c
Confidence 444444 47899999999999999999999655543 3334444566532111 112223333110000 0
Q ss_pred eeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728 115 RSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE 157 (450)
Q Consensus 115 r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~ 157 (450)
.. .....+...+++.+ +|.||.++++..+|+++|+||....
T Consensus 332 ~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 01 12345677788876 6899999999999999999998753
No 146
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.09 E-value=0.74 Score=47.77 Aligned_cols=106 Identities=18% Similarity=0.322 Sum_probs=68.5
Q ss_pred CeEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+...|+|. .++++|.++++..+|.+.|++|.--.....+... +|.|...+ -++..+.|++.+....
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~d-----~~~a~~~L~~~~~~~~---- 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDETD-----ADEAVRALKDQSGAAG---- 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHHH-----HHHHHHHHHHHHHhcC----
Confidence 34567777 6789999999999999999999744332122112 35552211 1223344444332111
Q ss_pred CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044728 112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMG 155 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~ 155 (450)
... .....+...|.+.+. ++||+++++..+|++.|+||..
T Consensus 328 --~~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 --LDR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred --Cce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 001 123556788888884 7899999999999999999984
No 147
>PRK07334 threonine dehydratase; Provisional
Probab=95.02 E-value=0.12 Score=53.73 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=49.6
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-----CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-----GSQAVNVFYVVDASGNPVKSETIESVRKEIGLT 406 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-----g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~ 406 (450)
...|+|.+.||||+|++|+++|++.++||.+....+. ++.+.-.|.|.-.+ .+++.++.+.|...
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d-----~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD-----AAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999998764 34444445443332 25677777777763
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.00 E-value=0.15 Score=53.13 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=50.4
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-----NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
.-...|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.+.- .+.++++++.+.|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 335899999999999999999999999999999998764 344444444443 134677777777765
No 149
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.91 E-value=0.2 Score=38.17 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=36.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEE
Q 044728 37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHV 82 (450)
Q Consensus 37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 82 (450)
+.+.+..+|+||.+..++.+|.+.|+||......- .++...-.|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 57899999999999999999999999999887642 33555433443
No 150
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.46 E-value=2.1 Score=44.38 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=67.2
Q ss_pred CceEEEEEE---ecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728 257 KGYTVVNLR---CPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR- 332 (450)
Q Consensus 257 ~~~t~v~V~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~- 332 (450)
.+...|.|. ..++||+++++..+|+++|++|..-...... .--+|.|.. +..+++.+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence 355678888 5788999999999999999999754322111 222355532 1233344444443211
Q ss_pred c------CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEE
Q 044728 333 R------TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRA 368 (450)
Q Consensus 333 r------~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~A 368 (450)
. .....+|.|.+. ++||+++++.++|++.||||...
T Consensus 327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 1 123456777775 79999999999999999999853
No 151
>PRK11899 prephenate dehydratase; Provisional
Probab=94.37 E-value=0.18 Score=49.93 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=43.3
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNP 390 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~ 390 (450)
.|.|-+...|+||.|+++-..|+++|||+.+....-.+ ..-+-+|||. -+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECCC
Confidence 45666666899999999999999999999999988654 5578899994 44654
No 152
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.32 E-value=0.27 Score=38.53 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=39.4
Q ss_pred EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCC
Q 044728 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGN 389 (450)
Q Consensus 340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~ 389 (450)
|-+...|+||-|+++-..|+.+|||+......... ...+-.|||.-. |.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC
Confidence 44556899999999999999999999999887654 447789999544 44
No 153
>PRK06635 aspartate kinase; Reviewed
Probab=93.85 E-value=0.79 Score=47.61 Aligned_cols=103 Identities=12% Similarity=0.209 Sum_probs=68.4
Q ss_pred ceEEEEEE-ecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hhc
Q 044728 258 GYTVVNLR-CPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IKR 332 (450)
Q Consensus 258 ~~t~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~~ 332 (450)
+...|+|. ..++||.++++..+|++.|+||........ +|..--.|.|.+ +..++..+.|.+. +.-
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 34445544 467899999999999999999996543322 234555566642 1233334444431 111
Q ss_pred c-C---CCceEEEEee---CCCcchHHHHHHHHHHCCceEEEEE
Q 044728 333 R-T---SEGISLELCC---EDRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 333 r-~---~~~t~iev~~---~DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
+ . ....++.|.+ .|+||++++|.++|++.||||....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 1 1 2346788876 5999999999999999999998853
No 154
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.60 E-value=0.047 Score=43.86 Aligned_cols=61 Identities=28% Similarity=0.387 Sum_probs=42.4
Q ss_pred EEEEeeCC-CcchHHHHHHHHHHCCceEEEEEEe-ec----C----ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCED-RAGLLSDVTRIFRENGLSVTRAEVT-TR----G----SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~D-rpGLL~~It~~l~~~gi~I~~AkI~-T~----g----~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
++.|.+.| ++|++++|+++|+++|+||...+-- .+ + .+..-.|.|+ |.+. ..+.|+++|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence 47889999 9999999999999999999765422 11 1 2345567775 3332 34566676664
No 155
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.55 E-value=0.48 Score=36.13 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=39.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE-EEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVV-YITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f-~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
+.|.-+|+||-|.+++.+++. |.||...+-...+.....++ .+.. .+++..+.+.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-------PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 357789999999999999999 99998775543321222222 2322 134566777776654
No 156
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.54 E-value=0.35 Score=53.96 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=48.8
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
..|.|.+.||+|||++|+.++++.++||..+.+.+.. ..+.-.|.|.-.+ -.++.++.+.|..
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~-----~~~L~~l~~~L~~ 731 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN-----LQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC-----HHHHHHHHHHHhc
Confidence 5899999999999999999999999999999987753 4455556554342 2466677776664
No 157
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.45 E-value=0.049 Score=43.76 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=43.8
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728 127 TIELTGRD-RPGLLSEVFAVLSDLKCNVMGAEVWTH---------NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV 196 (450)
Q Consensus 127 ~i~v~~~D-rpGLl~~i~~~L~~~glnI~~A~i~t~---------~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~ 196 (450)
.|+|.|+| ..|++++++++|+++|+||.+.+-.+. .......|.|+.+ +. + .+.+++.|.++
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~l 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLEL 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHHH
Confidence 37899999 999999999999999999976554321 1245567777752 11 2 35677777643
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.13 E-value=0.47 Score=52.94 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=49.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
-...|.|.+.||+|+|++|+.++++.++||.+..+.+. ++.+...|.|.- .+.+.+.++.+.|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 35688999999999999999999999999999998775 455555555543 13466777777765
No 159
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.08 E-value=0.41 Score=45.20 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=39.7
Q ss_pred CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 044728 336 EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYV 383 (450)
Q Consensus 336 ~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v 383 (450)
..+.+-+.-.|+||.+..|+.+|.++||||....+.-. |+.|.-+.-+
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 35678888899999999999999999999999998743 5666655555
No 160
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.04 E-value=1 Score=34.82 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=42.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
+.+..+|+||-|+++..+|+++|+||.+.......+ ...-.|++.- .|. . ++...+.+.+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-I-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-C-CCHHHHHHHHHHHH
Confidence 345568999999999999999999999986665433 4455666665 232 2 22344545455543
No 161
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.95 E-value=0.58 Score=35.65 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=27.1
Q ss_pred EEEecCCcChHHHHHHHHHhCCceEEEEEEEe
Q 044728 263 NLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA 294 (450)
Q Consensus 263 ~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 294 (450)
.|.-|||||-|.+++..++. |.||.+.+-..
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 57789999999999999999 99999875544
No 162
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.84 E-value=0.46 Score=36.09 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=37.2
Q ss_pred CCceEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 122 ALEHTTIELTGR----DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 122 ~~~~t~i~v~~~----DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
+.++..|+|.++ |.||++++++..|++.|+||.... | ...+.+.|..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 346778888887 799999999999999999998777 4 4456666665
No 163
>PRK06291 aspartate kinase; Provisional
Probab=92.60 E-value=4.2 Score=43.21 Aligned_cols=108 Identities=15% Similarity=0.257 Sum_probs=70.8
Q ss_pred CeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+...|+|.+. +.+|+++++..+|.+.|++|.-....+..... +|.|...+ -+...+.|++.+....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d-----~~~av~~L~~~~~~~~---- 388 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEAD-----LEKALKALRREFGEGL---- 388 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHH-----HHHHHHHHHHHHHHhc----
Confidence 3466777653 78999999999999999999865544432122 25553321 0223444555544211
Q ss_pred CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 044728 112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAE 157 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~ 157 (450)
...+ ....+...|.+.|. +++|+.+++..+|+..|+||....
T Consensus 389 --~~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 389 --VRDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred --Ccce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 0011 23455778888885 799999999999999999998443
No 164
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.58 E-value=0.57 Score=52.20 Aligned_cols=64 Identities=8% Similarity=0.163 Sum_probs=48.7
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS-QAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
...|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-|.-.+ -.++..|.+.|..
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-----~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD-----RVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence 358999999999999999999999999999999877653 445455554332 2466666666664
No 165
>PRK08210 aspartate kinase I; Reviewed
Probab=92.50 E-value=4.2 Score=42.24 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=66.3
Q ss_pred CeEEEEEEcCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCc
Q 044728 35 KATLIKVDSANK-RGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSL 113 (450)
Q Consensus 35 ~~~~V~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~ 113 (450)
+...|+|...+. ||.+++|..+|.+.|+||.-..++. . .. +|.+... ..+++++.|.....
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~i--s~~v~~~---------~~~~a~~~l~~~~~----- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EV--VFTVSDE---------DSEKAKEILENLGL----- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eE--EEEEcHH---------HHHHHHHHHHHhCC-----
Confidence 446777776554 9999999999999999999764442 2 22 3554321 12233444433210
Q ss_pred ceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044728 114 RRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMG 155 (450)
Q Consensus 114 ~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~ 155 (450)
.+ ....+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 11 13455777888874 8999999999999999999974
No 166
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.50 E-value=0.55 Score=44.35 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=44.5
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS 173 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~ 173 (450)
+..++...+.+.-.|+||....++.+|.++|+||...++... ++.+..+..+..
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 556677788888999999999999999999999999999875 455665555544
No 167
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.24 E-value=0.56 Score=46.17 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=44.3
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPV 391 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l 391 (450)
.|.|=+...|+||-|+++-.+|+.+|||+.+....-.+ .-.+-+|||. -+|..-
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD-~eg~~~ 248 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFID-IEGHID 248 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEE-EecCcC
Confidence 57777788899999999999999999999999987544 5588899994 445543
No 168
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.15 E-value=1.3 Score=36.06 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=44.1
Q ss_pred eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330 (450)
Q Consensus 259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L 330 (450)
.+-+.+..+|+||-|+++-..|+.+|+|+..-.-.-.. ...--.|+|. .+|. . ++ ..+.+.+.|.+.|
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~-~-~~-~~~~~l~~L~~~~ 82 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK-S-AP-ALDPIIKSLRNDI 82 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC-C-CH-HHHHHHHHHHHHh
Confidence 35566666999999999999999999999977665432 2222345554 3444 2 22 4555555555544
No 169
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.10 E-value=0.74 Score=51.32 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
...|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.+.- .+.+.+.+|-..|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 56888999999999999999999999999999987764 44455555543 13456777777765
No 170
>PRK09034 aspartate kinase; Reviewed
Probab=91.90 E-value=4.8 Score=42.64 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=66.9
Q ss_pred eEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728 36 ATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS 112 (450)
Q Consensus 36 ~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~ 112 (450)
.+.|+|. .++++|.++++.++|++.|++|.-. . .+... -+|.|.+.+ +.. ..+..+...|.....
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~~s-is~~v~~~~---~~~-a~~~~l~~el~~~~~---- 375 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGIDD-LSIIIRERQ---LTP-KKEDEILAEIKQELN---- 375 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCCcE-EEEEEeHHH---hhH-HHHHHHHHHHHHhhC----
Confidence 3556665 3678999999999999999999864 2 22222 236654322 110 011223222321110
Q ss_pred cceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEE
Q 044728 113 LRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 113 ~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
... .....+...|.+.+ .+.||+++++..+|+++|+||.....
T Consensus 376 -~~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 376 -PDE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred -Cce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 001 12345677888866 47899999999999999999987654
No 171
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=91.87 E-value=0.63 Score=48.20 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=43.3
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT-RGSQAVNVFYVVDASGNP 390 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T-~g~~a~D~F~v~~~~g~~ 390 (450)
.|.|-+...|+||.|+++-..|+.+|||+.+....- .+..-+-.|||.- +|..
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~-eg~~ 350 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV-QANL 350 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE-eCCC
Confidence 455667778999999999999999999999999884 4556888999944 4644
No 172
>PRK08210 aspartate kinase I; Reviewed
Probab=91.86 E-value=2.8 Score=43.58 Aligned_cols=97 Identities=10% Similarity=0.238 Sum_probs=66.3
Q ss_pred CceEEEEEEecCC-cChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--
Q 044728 257 KGYTVVNLRCPDR-PKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-- 333 (450)
Q Consensus 257 ~~~t~v~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-- 333 (450)
.+-..|+|...+. ||.++++...|+++|+||....... .. -+|.+.. ...+++.+.|.+. ...
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence 3455677776665 9999999999999999999773331 21 2355542 1334444444432 111
Q ss_pred -CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEE
Q 044728 334 -TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTR 367 (450)
Q Consensus 334 -~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~ 367 (450)
...-.+|.|.+. ++||+++++.++|++.||+|.+
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 123467777775 8999999999999999999975
No 173
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.85 E-value=0.46 Score=48.88 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=40.0
Q ss_pred ceEEEEeeC-CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCC
Q 044728 337 GISLELCCE-DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDAS 387 (450)
Q Consensus 337 ~t~iev~~~-DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~ 387 (450)
.+.|.+.-+ |+||.|++|+.+|+.+||||.+..+ .....-+..|||.-..
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 466777776 9999999999999999999999998 4444444459996654
No 174
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.84 E-value=0.79 Score=51.04 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=47.4
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
...|.|.+.||+|+|++|+.++++.++||.+..+.+.. ..+.-.|-|.-.+ -.++..+...|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-----~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN-----YKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence 35899999999999999999999999999999998764 3344344443332 2456666666653
No 175
>PRK09034 aspartate kinase; Reviewed
Probab=91.38 E-value=4.5 Score=42.86 Aligned_cols=107 Identities=11% Similarity=0.167 Sum_probs=68.7
Q ss_pred ceEEEEEEe---cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-
Q 044728 258 GYTVVNLRC---PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR- 333 (450)
Q Consensus 258 ~~t~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r- 333 (450)
+.+.|++.+ +++||+++++...|+++|++|.-. + .+..--+|.|.+.+ ... .....+.+.|...+...
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence 456677764 678999999999999999999875 2 22222346666421 100 01123333333222110
Q ss_pred ---CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 044728 334 ---TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTT 372 (450)
Q Consensus 334 ---~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T 372 (450)
...-..|.+.+. ++||++++|..+|++.||||....-.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 023467888654 899999999999999999999875433
No 176
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.31 E-value=1 Score=50.24 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=49.0
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+...+.+|-..|+
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 356888999999999999999999999999999997763 55544555443 13456677776665
No 177
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.20 E-value=0.76 Score=41.43 Aligned_cols=37 Identities=14% Similarity=0.408 Sum_probs=33.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS 163 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~ 163 (450)
-+.+.+.++||.|.++++.++++|.||..++.+..++
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~ 40 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKD 40 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhcc
Confidence 3678899999999999999999999999999988643
No 178
>PRK06291 aspartate kinase; Provisional
Probab=90.76 E-value=6.6 Score=41.76 Aligned_cols=102 Identities=10% Similarity=0.157 Sum_probs=68.6
Q ss_pred CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728 257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR- 332 (450)
Q Consensus 257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~- 332 (450)
.+...|.|.+. +.||+++++..+|+++|++|......+.. .--+|.|.. ...++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 35567888765 68999999999999999999865333322 222355542 1223333444443321
Q ss_pred cC------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728 333 RT------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 333 r~------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.. ..-.+|.|.+. +++|++.++..+|++.||+|....
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 11 23467888886 799999999999999999998544
No 179
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.55 E-value=0.51 Score=49.30 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=47.4
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVR 400 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~ 400 (450)
.+.|-+.-.|+||.++.|+..|+++|+||.+.+....|+.+.-+|-+ ++ ++.++-+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence 47888899999999999999999999999999999999777766655 33 33434444444
No 180
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.55 E-value=0.88 Score=38.86 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=41.0
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ-AVNVFYVVDA 386 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~-a~D~F~v~~~ 386 (450)
.+.|-+...|+||-|++|-..|+.+|||+........+.. -+-.|||.-.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 4667777799999999999999999999999998876544 5678888543
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.46 E-value=1.7 Score=44.50 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA 386 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~ 386 (450)
.+.+.|.-+||||-|+.|+..|.+.||||.+.+|.-.-+...-++.++..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~ 339 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK 339 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence 48899999999999999999999999999999997666666666666555
No 182
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=90.44 E-value=1.5 Score=34.06 Aligned_cols=47 Identities=9% Similarity=0.221 Sum_probs=36.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEee
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITS 173 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~ 173 (450)
.+.+..+|+||-|+++-..|+.+|+|+..-......+ ...=.|+|.-
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 3455668999999999999999999999888766543 3455777765
No 183
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.16 E-value=1.2 Score=46.56 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=44.6
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
......|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-+|.+..
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~ 386 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA 386 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence 3467888889999999999999999999999999999888877777665543
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.03 E-value=2.5 Score=33.77 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=37.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeecCCCCCCCC-HHHHHHHHHHHHH
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW-THNSRMASVVYITSEATGLPIDD-PDTLAKIKRLLLY 195 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~~~~~d~f~V~~~~~g~~i~~-~~~~~~l~~~L~~ 195 (450)
++.|.-+|+||-|++++.+|+ +.||....-. ...+.+.-.+.+.. + + ++..+++.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~------~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-A------NGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-C------CcHHHHHHHHHHHHH
Confidence 577888999999999999999 5555533222 22233333343433 1 2 3556777777654
No 185
>PRK06382 threonine dehydratase; Provisional
Probab=90.01 E-value=4 Score=42.58 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=48.3
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-----eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-----HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-----~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
....+.+.|.-+|+||-|++++..|.++|+||.+..... ..+...-.|.|... +++..+.|.+.|++
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 344778999999999999999999999999998876642 13445566666651 23444566666654
No 186
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.69 E-value=19 Score=38.21 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728 34 RKATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF 110 (450)
Q Consensus 34 ~~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~ 110 (450)
++.+.|+|.. ...+|..+++..+|.+.|+||.--........ -+|.|...+. +...+.+++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 4556666664 33459999999999999999985544432222 2366533221 2233444444432210
Q ss_pred CCcceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 111 RSLRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 111 ~~~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
......+...|.+++ ...||..+++..+|++.|+||.... + ....-.|.|..
T Consensus 376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~~ 430 (447)
T COG0527 376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVDE 430 (447)
T ss_pred -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEcc
Confidence 112345567777776 4778999999999999999999877 2 13444555554
No 187
>PRK09181 aspartate kinase; Validated
Probab=89.40 E-value=14 Score=39.53 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=66.7
Q ss_pred CeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+.+.|+|.+ .+.+|+.+++.++|.+.|++|. .+.+... .-+|.|... . + ..+++.+.|.....
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~----~-~~~~~~~~L~~~~~--- 393 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L----K-TLKRVIAELEKRYP--- 393 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h----H-HHHHHHHHHHHhcC---
Confidence 456667754 3789999999999999999997 3433221 123555332 1 1 12233333322110
Q ss_pred CcceeeeccCCCceEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 044728 112 SLRRSVGVQAALEHTTIELTGRD--RPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~D--rpGLl~~i~~~L~~~glnI~~A~i 158 (450)
...+ . ..+...|.++|.. +||+.+++..+|++.|+||..-..
T Consensus 394 --~~~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 394 --NAEV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred --CceE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 0012 1 2567888888754 899999999999999999976543
No 188
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=89.31 E-value=1.5 Score=48.60 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=48.3
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728 123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMA-SVVYITSEATGLPIDDPDTLAKIKRLLL 194 (450)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~-d~f~V~~~~~g~~i~~~~~~~~l~~~L~ 194 (450)
.-...|.|.+.||+|+|++|+.+|+..++||.+....+.+++.. -.|.+.- .+...+.+|-..|.
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~ 690 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK 690 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999888644433 3333333 23456666666664
No 189
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=89.11 E-value=17 Score=38.23 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=66.0
Q ss_pred CeEEEEEEcC-CC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728 35 KATLIKVDSA-NK-RGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS 112 (450)
Q Consensus 35 ~~~~V~V~~~-Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~ 112 (450)
+...|+|.+. .. +|.++++.+.|.+.|++|.-....+.. .. -.|.|...+- +...+.|........
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~~~~~~~----- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKSELNLSA----- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHHHHHhcC-----
Confidence 3455666542 23 799999999999999999866543332 11 1355433211 112222221111110
Q ss_pred cceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728 113 LRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE 157 (450)
Q Consensus 113 ~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~ 157 (450)
... .....+...|++.+ .+.||+++++..+|+.+|+||....
T Consensus 369 -~~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 -LSS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -cce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 001 12455677888865 4789999999999999999997665
No 190
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.93 E-value=1.4 Score=45.04 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
.-+..+.+.|.-+|+||-+++|+..|...|+||.+.+|....+....++.++-
T Consensus 286 ~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 286 AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 34578999999999999999999999999999999999776555555665554
No 191
>PRK06382 threonine dehydratase; Provisional
Probab=88.66 E-value=2.1 Score=44.65 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe----ec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728 335 SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT----TR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI 407 (450)
Q Consensus 335 ~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~----T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~ 407 (450)
.+.+.+.|.-+|+||-|.+|++.|.++|+||.+.... .. -+.+.=+|.|...+ ....++|.+.|.+..
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-----~~~~~~v~~~L~~~G 400 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-----QDHLDRILNALREMG 400 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-----HHHHHHHHHHHHHCC
Confidence 3467999999999999999999999999999877653 11 22344556664431 244457777777643
No 192
>PRK12483 threonine dehydratase; Reviewed
Probab=88.63 E-value=16 Score=39.43 Aligned_cols=141 Identities=10% Similarity=0.109 Sum_probs=87.5
Q ss_pred ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHH-HHHHHHHHHH-H-----
Q 044728 258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAER-QRVINCLEAA-I----- 330 (450)
Q Consensus 258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~-~~l~~~L~~~-L----- 330 (450)
....+.|.-+||||-|.+++..|... ||.+..-......-..+++.....+. +.. +.|.+.|.+. .
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~dl 416 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVLDL 416 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeEEC
Confidence 44578899999999999999999988 88776554432222333433332221 233 6677777532 0
Q ss_pred --------------hccCC---CceEEEEeeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCC
Q 044728 331 --------------KRRTS---EGISLELCCEDRAGLLSDVTRIFRE-NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392 (450)
Q Consensus 331 --------------~~r~~---~~t~iev~~~DrpGLL~~It~~l~~-~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~ 392 (450)
.++.+ +.-++.+.=+.|||-|.++++.|.. .+|.-.+=+. .|.....+| | |-.+.
T Consensus 417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~-v----gi~~~ 489 (521)
T PRK12483 417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVL-A----GLQVP 489 (521)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEE-E----EEeeC
Confidence 11222 3458889999999999999999986 3555444433 355555565 3 21122
Q ss_pred hHHHHHHHHHHhhccccccc
Q 044728 393 SETIESVRKEIGLTILRVKD 412 (450)
Q Consensus 393 ~~~~~~L~~~l~~~~l~~~~ 412 (450)
+++.+++.+.|.+.-....|
T Consensus 490 ~~~~~~~~~~l~~~gy~~~d 509 (521)
T PRK12483 490 EDERAALDAALAALGYPYWE 509 (521)
T ss_pred hhHHHHHHHHHHHCCCCeEE
Confidence 35567888888775555433
No 193
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.62 E-value=1.9 Score=45.36 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=47.1
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+.|.+...|+||.|++|+..|.++|++|.+..-....+....++++++.. ++.++++..++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 488999999999999999999999999999886544333455677777643 22344555555543
No 194
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=88.54 E-value=1.5 Score=33.30 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=33.4
Q ss_pred CceEEEEEEec----CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728 257 KGYTVVNLRCP----DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR 306 (450)
Q Consensus 257 ~~~t~v~V~~~----DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~ 306 (450)
.+...|.|.++ |.||+.++++..|++.|++|.... .+.-+.|.|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEe
Confidence 34567888887 799999999999999999998665 2333445555
No 195
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=88.54 E-value=1.5 Score=39.53 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=33.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCC
Q 044728 38 LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGE 74 (450)
Q Consensus 38 ~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g 74 (450)
-+.|.+.|+||.|.++++++++.|.||..|+.+. .+|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 4788899999999999999999999999999986 555
No 196
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=87.69 E-value=2.6 Score=46.65 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=50.6
Q ss_pred EEEEecc-CCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEE-EEEEecCCCCCCCcHHHHHHHHHHH
Q 044728 249 VTVESCT-DKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQ-EYYIRHVDGNPISSEAERQRVINCL 326 (450)
Q Consensus 249 V~v~~~~-~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d-~F~V~~~~g~~~~~~~~~~~l~~~L 326 (450)
|.|.... ..-...|.|.+.||+|+|++++.+|+..+.||......+.++.+.. .|.+.- .+-..+..+...|
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l 689 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARL 689 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHH
Confidence 3555543 3345689999999999999999999999999999988876443333 333331 1223556666555
Q ss_pred HH
Q 044728 327 EA 328 (450)
Q Consensus 327 ~~ 328 (450)
.+
T Consensus 690 ~~ 691 (701)
T COG0317 690 KQ 691 (701)
T ss_pred hc
Confidence 43
No 197
>PLN02551 aspartokinase
Probab=87.66 E-value=22 Score=38.44 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=67.6
Q ss_pred CeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+.+.|+|.+. +.+|.++++...|.+.|++|.-. .+.. .. -+|.|...+-. ..+.+.+.+++.+.+...
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe-~s-Is~~v~~~~~~--~~~~i~~~l~~l~~el~~--- 435 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE-VS-ISLTLDPSKLW--SRELIQQELDHLVEELEK--- 435 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC-CE-EEEEEehhHhh--hhhhHHHHHHHHHHHhhc---
Confidence 4467777654 68999999999999999999855 2322 11 13555332211 001011112221111110
Q ss_pred CcceeeeccCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 112 SLRRSVGVQAALEHTTIELTGR--DRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
...+ ....+...|.|+|. ..||+++++..+|+..|+||......+
T Consensus 436 --~~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 436 --IAVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred --CCeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 0011 23456777888764 688999999999999999998665433
No 198
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=87.62 E-value=13 Score=42.36 Aligned_cols=114 Identities=13% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728 34 RKATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF 110 (450)
Q Consensus 34 ~~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~ 110 (450)
++.+.|+|.+ +++||.++++..+|.+.|++|.-....+.. ..+ +|.|...+. +...+.|++.+......
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~sI-sf~V~~~d~-----~~av~~L~~~f~~el~~- 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YSI-SFCVPQSDA-----AKAKRALEEEFALELKE- 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ceE-EEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence 3556788865 478999999999999999999755544322 222 355543221 22334444444211100
Q ss_pred CCcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 044728 111 RSLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 111 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
..... .....+...|.+.+. ++||+++++..+|.+.|+||....-
T Consensus 385 -~~~~~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 385 -GLLEP--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred -CCcce--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 00001 123456788888885 7899999999999999999986543
No 199
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.54 E-value=15 Score=38.60 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=65.1
Q ss_pred ceEEEEEEecC-C-cChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-C
Q 044728 258 GYTVVNLRCPD-R-PKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-T 334 (450)
Q Consensus 258 ~~t~v~V~~~D-r-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-~ 334 (450)
+...|.|.+.+ . ||.++++..+|+++|++|......+. + .--.|.|... ..++..+.|....... .
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence 45567777644 3 79999999999999999986642222 2 1123555421 2222233333221111 1
Q ss_pred ------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728 335 ------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 335 ------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.....+.+.+. ++||++++|.+.|++.||||....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 23467888654 789999999999999999998775
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.25 E-value=4.9 Score=32.01 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=40.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe-ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccc
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT-TRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRV 410 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~-T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~ 410 (450)
++.|.-+||||=|++++++|+..+|+ ...-. ...+.+.-.+-+...+| .++.+++.+.|.+.....
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~--~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNIT--EFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKSAGYEV 69 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCcee--EEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHHCCCCe
Confidence 57888999999999999999955544 32222 11233333333433311 256678888888755544
No 201
>PRK09181 aspartate kinase; Validated
Probab=87.14 E-value=8.5 Score=41.07 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=68.7
Q ss_pred ceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-c
Q 044728 258 GYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-R 333 (450)
Q Consensus 258 ~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-r 333 (450)
+.+.|+|.+. +.||+.+++...|+++|++|. -+.+.. .--+|.|.+. . ...+++.+.|.+.+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~----~---~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS----L---KTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC----h---HHHHHHHHHHHHhcCCce
Confidence 5667777544 689999999999999999998 233322 2234566432 0 1334455555543321 1
Q ss_pred --CCCceEEEEeeCC--CcchHHHHHHHHHHCCceEEEEE
Q 044728 334 --TSEGISLELCCED--RAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 334 --~~~~t~iev~~~D--rpGLL~~It~~l~~~gi~I~~Ak 369 (450)
...-.+|.|.+.. +||+.+++.++|++.||||....
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 2345678888765 89999999999999999998755
No 202
>PRK09084 aspartate kinase III; Validated
Probab=86.92 E-value=27 Score=36.93 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=63.0
Q ss_pred CeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+...|+|.+ .+.+|.++++...|.+.|++|.-.. +.. . --+|.|...+-..-......+++.+.|....
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse-~-sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~---- 376 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE-V-SVSLTLDTTGSTSTGDTLLTQALLTELSQLC---- 376 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC-c-EEEEEEechhhhhhhhHHHHHHHHHHHhcCC----
Confidence 456777765 4789999999999999999998554 221 1 1235554322110000112233433343211
Q ss_pred CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCc
Q 044728 112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKC 151 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~gl 151 (450)
.+ .-..+...|.+.|. ++||+++++..+|...++
T Consensus 377 ----~i--~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 377 ----RV--EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred ----eE--EEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 11 23556788888885 789999999999987543
No 203
>PRK12483 threonine dehydratase; Reviewed
Probab=86.63 E-value=19 Score=38.90 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc----C
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR----S 109 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~----~ 109 (450)
....+.|..|||||-|.+++.+|... ||.+..-.. ..+.+ ..++..+-.+. ++..+.|.+.|.+..- +
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~dl 416 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPR----HDPRAQLLASLRAQGFPVLDL 416 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEEC
Confidence 45788999999999999999999988 888766654 33333 23433333222 2233677777765441 0
Q ss_pred CC-----Ccce-eeec-c-CCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEE
Q 044728 110 FR-----SLRR-SVGV-Q-AALEHTTIELTGRDRPGLLSEVFAVLSD-LKCNVMGAE 157 (450)
Q Consensus 110 ~~-----~~~r-~v~~-~-~~~~~t~i~v~~~DrpGLl~~i~~~L~~-~glnI~~A~ 157 (450)
.. ..-| -|.- . ....--.+.|.-|.|||-|.+++..|.. .+++-.+=+
T Consensus 417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR 473 (521)
T PRK12483 417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYR 473 (521)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeec
Confidence 00 0000 0111 1 1234567788889999999999999997 366554433
No 204
>PLN02317 arogenate dehydratase
Probab=86.52 E-value=3 Score=43.04 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.0
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ---------------AVNVFYVVDASGNPVKSETIESVRK 401 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~---------------a~D~F~v~~~~g~~l~~~~~~~L~~ 401 (450)
.|.|-+.-.|+||.|+++-.+|+.+|||+..........+ -+-.|||.-. |..- +...+..-+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e-g~~~-d~~~~~aL~ 360 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE-ASMA-DPRAQNALA 360 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE-cCcC-CHHHHHHHH
Confidence 3667777789999999999999999999999987765443 4569999544 5432 333333334
Q ss_pred HHhh
Q 044728 402 EIGL 405 (450)
Q Consensus 402 ~l~~ 405 (450)
.|.+
T Consensus 361 ~L~~ 364 (382)
T PLN02317 361 HLQE 364 (382)
T ss_pred HHHH
Confidence 4443
No 205
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.44 E-value=11 Score=42.92 Aligned_cols=102 Identities=9% Similarity=0.128 Sum_probs=68.8
Q ss_pred CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH---
Q 044728 257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI--- 330 (450)
Q Consensus 257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L--- 330 (450)
.+.+.|.|.+. .+||+++++..+|+++|++|......+. + .--+|.|... ..++..+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssS-e-~sIsf~V~~~---------d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSS-E-YSISFCVPQS---------DAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCC-C-ceEEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence 46678888765 6899999999999999999975543322 2 2224555531 2233333343332
Q ss_pred -hc-cC------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728 331 -KR-RT------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 331 -~~-r~------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.. .. ..-.+|.|.+. ++||++.++..+|.+.||||....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 21 11 23467888886 789999999999999999998654
No 206
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.34 E-value=6.1 Score=30.84 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred EEEEe---eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHH-HHHHHHhh
Q 044728 339 SLELC---CEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIE-SVRKEIGL 405 (450)
Q Consensus 339 ~iev~---~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~-~L~~~l~~ 405 (450)
.|+|. ..++||++++|...|+++||+|.... | ++ ..=.|-|... .+..++.+. +|.++|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence 45552 46889999999999999999999874 3 33 3334555432 222223333 66666665
No 207
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.27 E-value=5.3 Score=31.20 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=36.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
.+.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 345556899999999999999999999988877643 33555777765
No 208
>PLN02551 aspartokinase
Probab=85.79 E-value=34 Score=37.04 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH---HH
Q 044728 257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA---AI 330 (450)
Q Consensus 257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---~L 330 (450)
.+.+.|+|.+. +.||.++++...|+++|++|.-- .+. + .--+|.+...+-. ..+.+++.+.+ .|
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e-~sIs~~v~~~~~~------~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-E-VSISLTLDPSKLW------SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-C-CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence 35567888655 68999999999999999999866 222 2 2224566532211 11122222221 22
Q ss_pred hc--cC---CCceEEEEeeC--CCcchHHHHHHHHHHCCceEEEEEEe
Q 044728 331 KR--RT---SEGISLELCCE--DRAGLLSDVTRIFRENGLSVTRAEVT 371 (450)
Q Consensus 331 ~~--r~---~~~t~iev~~~--DrpGLL~~It~~l~~~gi~I~~AkI~ 371 (450)
.+ +. ....+|.|.+. .+||+++++.++|++.||||......
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 21 11 23456666654 68999999999999999999876633
No 209
>PRK14646 hypothetical protein; Provisional
Probab=85.63 E-value=10 Score=34.09 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeCCC
Q 044728 271 KLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCEDR 347 (450)
Q Consensus 271 GLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~Dr 347 (450)
.+...+..++..+|+.+.+..+...++ +++ .++|..++|..+.- +.++.+-+.+.+.|.. ..+..|.+||+++.=
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 456678888999999999999998765 555 44554444433433 3788898999888863 356789999998733
Q ss_pred cchHHHHHHHHHHCCce
Q 044728 348 AGLLSDVTRIFRENGLS 364 (450)
Q Consensus 348 pGLL~~It~~l~~~gi~ 364 (450)
---|..--.+-.-.|=.
T Consensus 86 dRpL~~~~df~r~~G~~ 102 (155)
T PRK14646 86 SDELTSERDFKTFKGFP 102 (155)
T ss_pred CCcCCCHHHHHHhCCCE
Confidence 33344444444444433
No 210
>PRK14630 hypothetical protein; Provisional
Probab=85.54 E-value=7.3 Score=34.56 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=56.3
Q ss_pred CCcChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceEEEEeeC-
Q 044728 268 DRPKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCE- 345 (450)
Q Consensus 268 DrpGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~iev~~~- 345 (450)
|.-.+-..+..++..+|+.+.+......++ ..+ .+++....|-.+ +.++.+-+.+...|....+..|.+||+++
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG 81 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPG 81 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence 445566778889999999999999877654 554 445544445333 37888888887777655577899999987
Q ss_pred -CCc
Q 044728 346 -DRA 348 (450)
Q Consensus 346 -Drp 348 (450)
|||
T Consensus 82 ldRp 85 (143)
T PRK14630 82 INRK 85 (143)
T ss_pred CCCc
Confidence 666
No 211
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.45 E-value=1.6 Score=41.90 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=36.9
Q ss_pred EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEe
Q 044728 261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQ--EYYIR 306 (450)
Q Consensus 261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d--~F~V~ 306 (450)
.|.+...|.||++.+|+++|+..|+||.+.-+--....++. +..++
T Consensus 79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~ 126 (309)
T KOG2663|consen 79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ 126 (309)
T ss_pred eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe
Confidence 58899999999999999999999999999877655444444 44454
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.03 E-value=15 Score=37.81 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=45.3
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe---e--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT---H--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t---~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
....+.|.-+|+||.|++++..++++|.||.+..-.. . .+.+.-.+.+... +++..+.|.+.|++
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3558899999999999999999999999999885442 1 2344444555441 23455666666653
No 213
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=84.56 E-value=3.9 Score=36.95 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=46.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
...+.+.-.|.||.|+++++.|+..|.||.+-.+.-. .....-+-.|.. | ++...+++...|.++..
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence 4567888899999999999999999999999888643 222333333333 2 23456777777776554
No 214
>PRK14636 hypothetical protein; Provisional
Probab=84.48 E-value=9.1 Score=35.20 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=56.6
Q ss_pred CcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC-
Q 044728 269 RPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE- 345 (450)
Q Consensus 269 rpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~- 345 (450)
.+-+...+..++..+|+.+.+..+...++..+-.++|..+++..+.- +.++.+-+.|...|.. ..+..|.+||+++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG 82 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSPG 82 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence 34566778888999999999999888765433344554443333433 3788999999888863 2467899999987
Q ss_pred -CCcc
Q 044728 346 -DRAG 349 (450)
Q Consensus 346 -DrpG 349 (450)
|||=
T Consensus 83 ldRpL 87 (176)
T PRK14636 83 IDRPL 87 (176)
T ss_pred CCCCC
Confidence 6663
No 215
>PRK14634 hypothetical protein; Provisional
Probab=84.47 E-value=12 Score=33.67 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=56.2
Q ss_pred cChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC-
Q 044728 270 PKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE- 345 (450)
Q Consensus 270 pGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~- 345 (450)
+.+..-+..++..+|+.+.+..+...++ +++ ..+|..+.|..++- +.++.+-+.+...|... .+..|.+||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 4566677788999999999999988754 555 45555455643433 37889999998888642 467899999987
Q ss_pred -CCc
Q 044728 346 -DRA 348 (450)
Q Consensus 346 -Drp 348 (450)
|||
T Consensus 85 ldRp 88 (155)
T PRK14634 85 IGDQ 88 (155)
T ss_pred CCCc
Confidence 666
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=84.38 E-value=7.3 Score=40.47 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
......+.|.-+|+||-|+++...++++|.||.+.....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 445678999999999999999999999999999887653
No 217
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.18 E-value=3 Score=35.62 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=38.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS 173 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~ 173 (450)
.+.+.+..+|+||-|+++-..|+.+|+|+..-......+. ..=.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 5677777799999999999999999999998887765433 344666664
No 218
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=84.11 E-value=3.3 Score=37.41 Aligned_cols=63 Identities=25% Similarity=0.386 Sum_probs=43.4
Q ss_pred eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe-ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT-TRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~-T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.++.+.-.|.||.|..++..|++.|+||++..+. |.-.....+=.+...+ +...+++.+.|..
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~-----~~~~EQi~kQL~k 68 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGD-----EQVLEQIIKQLNK 68 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCC-----cchHHHHHHHHHh
Confidence 4677888999999999999999999999998875 3333333222233222 2345666666665
No 219
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=84.03 E-value=6.2 Score=40.61 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=47.8
Q ss_pred CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe----e-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728 336 EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT----T-RGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL 408 (450)
Q Consensus 336 ~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~----T-~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l 408 (450)
+...+.|.-+||||.|.+|++.+++.|.||....-. + .-+.+.=.+.+.... .+..++|.+.|.+...
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-----~~~~~~i~~~L~~~G~ 376 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-----KEHLDEILKILRDMGY 376 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-----HHHHHHHHHHHHHcCC
Confidence 446899999999999999999999999999887533 1 123444444443331 3556788888876443
No 220
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.87 E-value=6.3 Score=30.72 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 345 EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 345 ~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.+.||++++|.++|+++||||...- + ++ ..=.|-|.... ..+.++..++|.++|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 4789999999999999999999874 2 33 22344443332 11333456677777765
No 221
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=83.80 E-value=2.8 Score=40.39 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
....+|.+...|.||.+++|+++|+..|.||.+--+--
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 34677888889999999999999999999999987754
No 222
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.47 E-value=2.6 Score=43.39 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=38.2
Q ss_pred ceEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 124 EHTTIELTGR-DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 124 ~~t~i~v~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
..+.+.+.-+ |+||.|++++..|+.+|+||.+-++.-.. ...-.|++.=
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEE
Confidence 5777888886 99999999999999999999999993222 2222377665
No 223
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.05 E-value=4.8 Score=42.28 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
+.....+.|.+...|+||.|++|+++|.++|+||.+.......+....++.++.
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 344557889999999999999999999999999998765543334455566666
No 224
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=82.97 E-value=5.8 Score=39.13 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=41.5
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS 173 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~ 173 (450)
..|.|-+..+|+||.|+++-++|+.+|+|...-......+. ..=.|+|.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 58888888899999999999999999999998887765544 455777765
No 225
>PRK11899 prephenate dehydratase; Provisional
Probab=82.82 E-value=7.5 Score=38.47 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=40.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS 173 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~ 173 (450)
.|.+.+..+|+||.|+++-.+|+.+|+|+.+-......+. ..=.|++.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 5777778899999999999999999999998888765444 555788876
No 226
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.28 E-value=3.2 Score=44.86 Aligned_cols=61 Identities=28% Similarity=0.521 Sum_probs=43.8
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee--cCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT--RGSQAVNVFYVVDASGNPVKSETIESVRK 401 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T--~g~~a~D~F~v~~~~g~~l~~~~~~~L~~ 401 (450)
.+.+=+.-.|+||.+..|+..|.+++|||...++.- .|+.+.-+|.+ ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 456666779999999999999999999999988764 34555555544 33455555555553
No 227
>PRK14645 hypothetical protein; Provisional
Probab=82.03 E-value=16 Score=32.90 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=61.4
Q ss_pred CcChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC
Q 044728 269 RPKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE 345 (450)
Q Consensus 269 rpGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~ 345 (450)
...+-..+..++..+|+.+.+..+...++ .++- ++|...+|..+.- +.++.+-+.+...|... .+..|.|||+++
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 85 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESP 85 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence 34566778889999999999999987764 5554 4444333433433 37888999998888643 467899999987
Q ss_pred --CCcchHHHHHHHHHHCC
Q 044728 346 --DRAGLLSDVTRIFRENG 362 (450)
Q Consensus 346 --DrpGLL~~It~~l~~~g 362 (450)
||| |...-.+-.-.|
T Consensus 86 GldRp--L~~~~df~r~~G 102 (154)
T PRK14645 86 GPKRP--LFTARHFERFAG 102 (154)
T ss_pred CCCCC--CCCHHHHHHhCC
Confidence 555 444444444444
No 228
>PRK08198 threonine dehydratase; Provisional
Probab=81.93 E-value=9.1 Score=39.77 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcC
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-----DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR 106 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-----~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~ 106 (450)
....+.|..+|+||-|+++...+.+.|.||.+....- ..+.+--.+.| +-.+ ++..+.|.+.|.+.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e~~~-----~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-ETRG-----PEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-EeCC-----HHHHHHHHHHHHHC
Confidence 3468999999999999999999999999999988752 22443322332 3221 33455666666543
No 229
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.33 E-value=3.7 Score=44.40 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=42.7
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS 173 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~ 173 (450)
+-.++...+.+...|+||.++.++..|.++|+||...++... ++.+..++.+..
T Consensus 447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~ 502 (526)
T PRK13581 447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD 502 (526)
T ss_pred EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence 445566777777899999999999999999999999998763 455666665544
No 230
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.17 E-value=3 Score=45.04 Aligned_cols=61 Identities=21% Similarity=0.508 Sum_probs=44.4
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT--TRGSQAVNVFYVVDASGNPVKSETIESVRK 401 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~--T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~ 401 (450)
.+.+=+.-.|+||.+..|+..|.+++|||...++. ..|+++.-++.+ ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 45566667899999999999999999999988876 345666655555 33555555555553
No 231
>PRK09224 threonine dehydratase; Reviewed
Probab=80.91 E-value=53 Score=35.32 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH------H-
Q 044728 258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA------I- 330 (450)
Q Consensus 258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~------L- 330 (450)
.-..+.|.-|||||-|.+++..|. +.||...+-.-.+.....+|+.....+. +...+.|.+.|++. +
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 345788999999999999999999 6888876544333223334444332221 11266777777542 0
Q ss_pred -------------hccCC---CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChH
Q 044728 331 -------------KRRTS---EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSE 394 (450)
Q Consensus 331 -------------~~r~~---~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~ 394 (450)
.++.+ +.-.+.+.=+.|||-|-++...|. -+-||...+=.-.|...--++ | |-.+.+.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~~ 474 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPDA 474 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecChh
Confidence 12222 235788999999999999999776 778888888653343222222 2 2111122
Q ss_pred HHHHHHHHHhhc
Q 044728 395 TIESVRKEIGLT 406 (450)
Q Consensus 395 ~~~~L~~~l~~~ 406 (450)
+.++|.+.+.+.
T Consensus 475 ~~~~~~~~l~~~ 486 (504)
T PRK09224 475 DEPEFEAFLDEL 486 (504)
T ss_pred hHHHHHHHHHHc
Confidence 456777777653
No 232
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=80.13 E-value=54 Score=37.74 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred CeEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+.+.|+|. ..+.+|.++++.+.|.+.|++|.-. .+.. .. -+|.+.+.+. ....+.++.+...|....
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse-~s-is~~i~~~~~--~~~~~~~~~l~~~l~~~~---- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE-TN-VTVSLDPSEN--LVNTDVLAALSADLSQIC---- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC-CE-EEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence 44667774 4578999999999999999999643 3322 11 1344433221 101223444444443211
Q ss_pred CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 044728 112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNV 153 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI 153 (450)
.+. ...+...|.|++. .+||+.+++..+|++.|+++
T Consensus 391 ----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 111 2345688888884 88999999999999977655
No 233
>PRK11898 prephenate dehydratase; Provisional
Probab=80.10 E-value=7.4 Score=38.56 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=45.6
Q ss_pred eEEEEeeC-CCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 338 ISLELCCE-DRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 338 t~iev~~~-DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
+.|-+.-. |+||-|+++-..|+++|||+......-.. ..-+-.|||.- +|.. ++...+++-+.|.+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~-eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV-EGHI-DDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE-EccC-CCHHHHHHHHHHHH
Confidence 44555554 46999999999999999999999877543 44677899954 4543 33344444454444
No 234
>PRK09224 threonine dehydratase; Reviewed
Probab=79.62 E-value=45 Score=35.91 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc----C
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR----S 109 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~----~ 109 (450)
.-..+.|.-|||||-|..++..|. +.||.+-+-.- ..+.+ .+|+..+-.+. ++-.+.|.+.|.+... +
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 357889999999999999999999 68888765543 22333 23443332221 1225567777755431 0
Q ss_pred CCC-----cce-eeec-c-CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 044728 110 FRS-----LRR-SVGV-Q-AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW 159 (450)
Q Consensus 110 ~~~-----~~r-~v~~-~-~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 159 (450)
... .-| -|.- . ...+.-.+.+.-|.|||-|.+...+|. -+.||..-+-.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 000 000 0111 1 122456788889999999999999777 67788777664
No 235
>PLN02550 threonine dehydratase
Probab=79.59 E-value=29 Score=38.13 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=86.1
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH------Hh-
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAA------IK- 331 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~------L~- 331 (450)
..+.|.-+||||-|.+++..|... ||.+..-.... +.+. +++..... ..+..++|.+.|++. |.
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l~~ 489 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVH-----TEQELQALKKRMESAQLRTVNLTS 489 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeCCC
Confidence 568899999999999999999986 77776544322 2222 22222221 224677777777642 10
Q ss_pred -------------ccC--CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHH
Q 044728 332 -------------RRT--SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETI 396 (450)
Q Consensus 332 -------------~r~--~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~ 396 (450)
.|. .+.-++.+.=+.|||-|..+.+.|... -||...+=...|+....+| | |-.+.+++.
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vl-v----Gi~v~~~e~ 563 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVL-V----GIQVPPEEM 563 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEE-E----EEeeCHHHH
Confidence 111 123578889999999999999988752 3444444434455544455 2 222223566
Q ss_pred HHHHHHHhhcccccccc
Q 044728 397 ESVRKEIGLTILRVKDD 413 (450)
Q Consensus 397 ~~L~~~l~~~~l~~~~~ 413 (450)
++|.+.|.+.-....|.
T Consensus 564 ~~l~~~l~~~gy~~~dl 580 (591)
T PLN02550 564 QEFKSRANALGYEYQDE 580 (591)
T ss_pred HHHHHHHHHcCCCeEEC
Confidence 78888887755555443
No 236
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.41 E-value=19 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=26.8
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEE
Q 044728 127 TIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 127 ~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
.|.+.| .+.||++++|..+|+++|+++.....
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 466666 48899999999999999999976644
No 237
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=79.03 E-value=5.6 Score=35.79 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=28.0
Q ss_pred EEEEee--CCCcchHHHHHHHHHHCCceEEEEEEe
Q 044728 339 SLELCC--EDRAGLLSDVTRIFRENGLSVTRAEVT 371 (450)
Q Consensus 339 ~iev~~--~DrpGLL~~It~~l~~~gi~I~~AkI~ 371 (450)
+||+.. .+.||+++.++..++++|++|..+-..
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 566655 567999999999999999999998744
No 238
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=78.85 E-value=21 Score=37.73 Aligned_cols=119 Identities=8% Similarity=0.082 Sum_probs=71.2
Q ss_pred CceEEEEEEecC---CcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh-c
Q 044728 257 KGYTVVNLRCPD---RPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK-R 332 (450)
Q Consensus 257 ~~~t~v~V~~~D---rpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~-~ 332 (450)
.+.+.|+|.+.. .+|..+++...|+++|+||..-........ -+|.+...+. +...+.|.+...+.+. -
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~~v 377 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLAEV 377 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcceE
Confidence 456677777543 459999999999999999975432222222 3466653211 1122333333332221 0
Q ss_pred cCC-CceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728 333 RTS-EGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA 386 (450)
Q Consensus 333 r~~-~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~ 386 (450)
... .--++.+.+. ..||+.+++.++|++.+|||.... -....=.|.|...
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~~ 431 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDEK 431 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEccH
Confidence 011 1245555554 789999999999999999999877 2233445667433
No 239
>PLN02550 threonine dehydratase
Probab=78.61 E-value=74 Score=34.97 Aligned_cols=114 Identities=9% Similarity=0.093 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc----CC
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR----SF 110 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~----~~ 110 (450)
...+.|..|||||-|.+++.+|... ||.+..-.- .-+.+. .++...-.+ .+-.+.|.+.|....- +.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~-----~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVHT-----EQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeCC-----HHHHHHHHHHHHHCCCCeEeCC
Confidence 4678999999999999999999986 888766543 223332 232223222 3456677777765541 10
Q ss_pred C-----Ccceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEE
Q 044728 111 R-----SLRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSD-LKCNVMGAE 157 (450)
Q Consensus 111 ~-----~~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~-~glnI~~A~ 157 (450)
. ..-|.+. -..-..--.+.+.-+.|||-|.+++.+|.. .+++-.+=+
T Consensus 489 ~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR 543 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR 543 (591)
T ss_pred CChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee
Confidence 0 0111111 111133556788899999999999998886 355554444
No 240
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=78.56 E-value=92 Score=35.65 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred CeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728 35 KATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR 111 (450)
Q Consensus 35 ~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~ 111 (450)
+.+.|+|.+. +.+|.++++..+|.+.|++|.--...+. +..+ .|.+... ..+.+.+.|.... .
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~si-s~~i~~~---------~~~~~~~~l~~~~-~-- 381 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQLL-QLAYTSE---------VADSALKLLDDAA-L-- 381 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-CcEE-EEEEeHH---------HHHHHHHHHHhhc-C--
Confidence 4556777665 7789999999999999999975543333 3221 2444321 1122233332211 0
Q ss_pred CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 044728 112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGA 156 (450)
Q Consensus 112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A 156 (450)
...+ ....+...|.+++. .++|+.+++..+|.+.|+++..-
T Consensus 382 --~~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 --PGEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred --CCcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0111 23566888999984 68999999999999999999543
No 241
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.22 E-value=5.4 Score=43.05 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=37.1
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA 386 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~ 386 (450)
.++|.+.||.|+..+|...|..++||+....|...| ..|+..+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~-----~~~~~~~ 44 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG-----RIYLNFA 44 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC-----eEEEeCC
Confidence 489999999999999999999999999999997664 3666444
No 242
>PRK14637 hypothetical protein; Provisional
Probab=77.46 E-value=26 Score=31.32 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=55.1
Q ss_pred CcChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC-CCceEEEEeeC-
Q 044728 269 RPKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT-SEGISLELCCE- 345 (450)
Q Consensus 269 rpGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~-~~~t~iev~~~- 345 (450)
--|....+..++..+|+.+.+.++...++ +.+-+| |....| ++- +.++.+-+.+...|..-. +..|.+||+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 36888899999999999999999998765 555444 433334 322 378888888887775422 35689999987
Q ss_pred -CCc
Q 044728 346 -DRA 348 (450)
Q Consensus 346 -Drp 348 (450)
|||
T Consensus 83 ldRp 86 (151)
T PRK14637 83 IERV 86 (151)
T ss_pred CCCC
Confidence 666
No 243
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.09 E-value=5 Score=43.36 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=42.3
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS 173 (450)
Q Consensus 120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~ 173 (450)
+-.++...+.+.-.|+||.+..++..|.++++||...++... ++.+..++.+..
T Consensus 446 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~ 501 (525)
T TIGR01327 446 DLEPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ 501 (525)
T ss_pred EEecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence 444566677777899999999999999999999999988764 456665665544
No 244
>PRK09084 aspartate kinase III; Validated
Probab=76.69 E-value=29 Score=36.77 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=62.2
Q ss_pred CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728 257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR- 332 (450)
Q Consensus 257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~- 332 (450)
.+...|+|.+. +.||.++++...|+++|++|.--. +. + .--+|.|...+-.. .....+.+.+.+.|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTTGSTS----TGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEechhhhh----hhhHHHHHHHHHHHhcC
Confidence 45667888754 689999999999999999998664 22 2 22346665422110 0112232333332321
Q ss_pred -cC---CCceEEEEeeC---CCcchHHHHHHHHHHCCc
Q 044728 333 -RT---SEGISLELCCE---DRAGLLSDVTRIFRENGL 363 (450)
Q Consensus 333 -r~---~~~t~iev~~~---DrpGLL~~It~~l~~~gi 363 (450)
+. +.-.+|.|.+. ++||+++++..+|++.++
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 11 23467888886 799999999999987433
No 245
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=76.18 E-value=15 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.4
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 132 GRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 132 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
.+|.||.++++...|+++|+||......... +...-.|.+..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH
Confidence 3789999999999999999999866443222 22333455544
No 246
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=76.09 E-value=4.8 Score=36.23 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=32.0
Q ss_pred cCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE
Q 044728 31 TSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS 70 (450)
Q Consensus 31 ~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 70 (450)
...-|..+|....++.||+++.+++.+++.||+|.++-..
T Consensus 90 ~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 90 LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 3344555666667889999999999999999999987664
No 247
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=76.09 E-value=26 Score=25.94 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=24.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 044728 127 TIELTGR---DRPGLLSEVFAVLSDLKCNVM 154 (450)
Q Consensus 127 ~i~v~~~---DrpGLl~~i~~~L~~~glnI~ 154 (450)
.|.+.+. +.||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677774 789999999999999999996
No 248
>PRK08526 threonine dehydratase; Provisional
Probab=75.92 E-value=44 Score=34.82 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=47.4
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-----SRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-----~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
......+.+.-+|+||-|++++..+...|.||....-.... +.+.-.+.+.. .+++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 44477889999999999999999999999999987765432 22333333333 135677777777653
No 249
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.92 E-value=29 Score=25.49 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=27.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 127 TIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 127 ~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
.|.+.+. ++||.++++..+|+++|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666664 789999999999999999998765433
No 250
>PRK14647 hypothetical protein; Provisional
Probab=75.75 E-value=33 Score=30.92 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC--C
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE--D 346 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~--D 346 (450)
+-..+..++..+|+.+.+..+...++ .++- ++|....|-.+ +.++.+-+.+...|... .+..|.+||+++ |
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lr-V~ID~~~gvsl---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLR-LFIDKEGGVNL---DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEE-EEEeCCCCCCH---HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 44566778899999999999998765 5554 44443334322 37899999998888643 467899999987 5
Q ss_pred CcchHHHHHHHHHHCC
Q 044728 347 RAGLLSDVTRIFRENG 362 (450)
Q Consensus 347 rpGLL~~It~~l~~~g 362 (450)
|| |...-..-.-.|
T Consensus 86 Rp--L~~~~~f~r~~G 99 (159)
T PRK14647 86 RP--LKKEADYERYAG 99 (159)
T ss_pred Cc--CCCHHHHHHhCC
Confidence 65 333334433333
No 251
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=75.61 E-value=20 Score=26.17 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHH
Q 044728 345 EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEI 403 (450)
Q Consensus 345 ~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l 403 (450)
.++||+.++|.++|+++|+++.... | ++ ..=.|++..... +...++|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~~----~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSLL----PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhhh----hHHHHHHHHhh
Confidence 3789999999999999999999873 3 33 444677754321 13445555544
No 252
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=75.15 E-value=11 Score=39.49 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=41.7
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNP 390 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~ 390 (450)
.+.|-+...|+||-|++|-++|+++|||+......... ..-+-.|||.-. |..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e-g~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD-EAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe-cCc
Confidence 35666777999999999999999999999998876543 445668999654 543
No 253
>PRK14631 hypothetical protein; Provisional
Probab=74.73 E-value=40 Score=30.92 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecC----------------CCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728 271 KLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHV----------------DGNPISSEAERQRVINCLEAAIKR- 332 (450)
Q Consensus 271 GLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~----------------~g~~~~~~~~~~~l~~~L~~~L~~- 332 (450)
-+...+.-+++.+|+.+.+..+...++ .++-+|+ ..+ .+..+.- +.++.+-+.+...|..
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I-D~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYI-DRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEE-ecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhccc
Confidence 355677788999999999999998765 5554444 322 1122332 3788899999888863
Q ss_pred -cCCCceEEEEeeCCCcchHHHHHHHHHHCCce
Q 044728 333 -RTSEGISLELCCEDRAGLLSDVTRIFRENGLS 364 (450)
Q Consensus 333 -r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~ 364 (450)
..+..|.+||+++-----|.....+-.-.|=.
T Consensus 87 d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~ 119 (174)
T PRK14631 87 DPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQ 119 (174)
T ss_pred ccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCe
Confidence 24678999999873333355555555554533
No 254
>PRK14640 hypothetical protein; Provisional
Probab=74.62 E-value=35 Score=30.51 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC--C
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE--D 346 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~--D 346 (450)
+...+..++..+|+.+.+..+...++ ..+ ..+|...+| ++- +.++.+-++|...|... .+..|.+||+++ |
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 45567778899999999999988654 555 444443444 332 47899999998888642 467899999987 5
Q ss_pred CcchHHHHHHHHHHCCceE
Q 044728 347 RAGLLSDVTRIFRENGLSV 365 (450)
Q Consensus 347 rpGLL~~It~~l~~~gi~I 365 (450)
|| |...-.+-.-.|=.|
T Consensus 84 Rp--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RP--LFKVAQFEKYVGQEA 100 (152)
T ss_pred Cc--CCCHHHHHHhCCCeE
Confidence 55 444444444444433
No 255
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=74.36 E-value=14 Score=32.18 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=40.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEE
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHV 82 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V 82 (450)
.-..+.++..||.|.|+++..++++.++||....+.. .+|.+--+..+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 4467889999999999999999999999999988875 67777555554
No 256
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=73.91 E-value=31 Score=42.03 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=83.3
Q ss_pred CCCEEEEeecC--CCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--c-C--CeEEEEEEEEeCCCCCCCchH
Q 044728 22 NPPRVTVDNTS--NRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--D-G--EWFMDVFHVTDQNGNKLSEDD 94 (450)
Q Consensus 22 ~~p~V~i~~~~--~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~-~--g~~~d~F~V~~~~g~~~~~~~ 94 (450)
++..+.+.... .++.+.++||.+.++..|.++..+|..+|+.|.+.+-+. . + .+.+..|.+..+.+..++..+
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 44666666433 346799999999999999999999999999999998763 2 3 256667888888877655556
Q ss_pred HHHHHHHHhCcCccCCCCcceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044728 95 VSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 95 ~~~~i~~~L~~~~~~~~~~~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
..+.+++++..... ..++++.-..-....=.++-+--||-.+++.|.+.|......+|
T Consensus 553 ~~~~~~~a~~~v~~------g~~e~D~~n~Lvl~agL~wrev~lLRA~~~Yl~Q~~~~~s~~~i 610 (1528)
T PF05088_consen 553 IRERFEEAFEAVWN------GRAENDGFNRLVLSAGLTWREVALLRAYARYLRQIGFPFSQEYI 610 (1528)
T ss_pred HHHHHHHHHHHHhc------CCCCCChHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 66677776643211 00000000000111111244456788888888888775444433
No 257
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=72.89 E-value=42 Score=30.01 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC--C
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE--D 346 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~--D 346 (450)
+-..+..++..+|+.+.+..+...++ ..+- .+|....| ++ -+.++.+-+.+...|... .+..|.+||+++ |
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~-V~Id~~~g--v~-iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLR-IYIDKEGG--ID-LDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 44566788999999999999998755 4443 44443334 22 247889999998888643 357899999987 5
Q ss_pred Ccc
Q 044728 347 RAG 349 (450)
Q Consensus 347 rpG 349 (450)
||=
T Consensus 85 RpL 87 (154)
T PRK00092 85 RPL 87 (154)
T ss_pred CcC
Confidence 553
No 258
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=72.38 E-value=87 Score=36.11 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=62.9
Q ss_pred CceEEEEEE---ecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728 257 KGYTVVNLR---CPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR- 332 (450)
Q Consensus 257 ~~~t~v~V~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~- 332 (450)
.+.+.|+|. ..+.+|.++++...|+++|++|.-- .+. + .--+|.+.+.+.. . .....+.+.+.|.. +..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e-~sis~~i~~~~~~-~-~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-E-TNVTVSLDPSENL-V-NTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-C-CEEEEEEcccccc-c-hHHHHHHHHHHHhh-cCcE
Confidence 356677775 3468999999999999999999754 222 2 2223555432210 0 01133333333332 100
Q ss_pred c-CCCceEEEEeeC---CCcchHHHHHHHHHHCCceE
Q 044728 333 R-TSEGISLELCCE---DRAGLLSDVTRIFRENGLSV 365 (450)
Q Consensus 333 r-~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I 365 (450)
. ...-.+|.|.+. .+||+++++..+|++.||++
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0 123467888886 88999999999999977654
No 259
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=72.17 E-value=20 Score=26.17 Aligned_cols=44 Identities=7% Similarity=0.045 Sum_probs=31.6
Q ss_pred EEEEee---CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE
Q 044728 339 SLELCC---EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVV 384 (450)
Q Consensus 339 ~iev~~---~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~ 384 (450)
+|.+.+ .+.||++++|.++|++.|+++....-.+. + ..=.|.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s-~-~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS-E-RNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-cEEEEEEe
Confidence 456666 38899999999999999999988754332 2 33345553
No 260
>PRK14643 hypothetical protein; Provisional
Probab=71.77 E-value=49 Score=30.06 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEec---CCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeCC
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRH---VDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCED 346 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~---~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~D 346 (450)
+..-+..++..+|+.+.+....+.++..+-..+|.+ .+|. ++- +.++.+.+.+.+.|.. ..+..|.+||+++.
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-vtl-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 88 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-LDF-DILIKANDLVSNKIDQFIKTSEKYLLEISSSG 88 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-cCH-HHHHHHHHHHHHHhCccCCCCCCeEEEecCCC
Confidence 455667788999999999999998654443555543 2332 332 3788899999888863 35678999999874
Q ss_pred CcchHHHHHHHHHHCCceE
Q 044728 347 RAGLLSDVTRIFRENGLSV 365 (450)
Q Consensus 347 rpGLL~~It~~l~~~gi~I 365 (450)
----|...-.+-.-.|=.|
T Consensus 89 leRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 89 IEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCHHHHHHhcCCeE
Confidence 3333544444444444433
No 261
>PRK14639 hypothetical protein; Provisional
Probab=71.57 E-value=39 Score=29.81 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=56.3
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC--CCcchH
Q 044728 276 AVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE--DRAGLL 351 (450)
Q Consensus 276 i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~--DrpGLL 351 (450)
+..++..+|+.+.+......++..+-.++|....| ++- +.++++-+.+.+.|... .+..|.+||+++ ||| |
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~Rp--L 77 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERK--L 77 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCc--C
Confidence 34567889999999999987654433455543334 332 47899999998888642 467899999987 555 4
Q ss_pred HHHHHHHHHCCceE
Q 044728 352 SDVTRIFRENGLSV 365 (450)
Q Consensus 352 ~~It~~l~~~gi~I 365 (450)
...-.+-.-.|-.|
T Consensus 78 ~~~~~f~r~~G~~v 91 (140)
T PRK14639 78 SKIEHFAKSIGELV 91 (140)
T ss_pred CCHHHHHHhCCCEE
Confidence 44444444444433
No 262
>PRK14638 hypothetical protein; Provisional
Probab=71.22 E-value=48 Score=29.59 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC--C
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE--D 346 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~--D 346 (450)
+-.-+..++..+|+.+.+......++ ..+- ++|..++|. ++- +.++.+-+.|...|... .+..|.+||+++ |
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lr-V~ID~~~G~-v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLR-IIIDNPVGY-VSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCC-cCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 44566778899999999999988754 5554 444434443 322 37889999998888632 457899999987 6
Q ss_pred CcchHHHHHHHHHHCC
Q 044728 347 RAGLLSDVTRIFRENG 362 (450)
Q Consensus 347 rpGLL~~It~~l~~~g 362 (450)
|| |...-..-.-.|
T Consensus 87 Rp--L~~~~~f~r~~G 100 (150)
T PRK14638 87 RP--LRGPKDYVRFTG 100 (150)
T ss_pred CC--CCCHHHHHHhCC
Confidence 66 333334433333
No 263
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.80 E-value=43 Score=25.99 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=32.2
Q ss_pred EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 126 TTIELT---GRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 126 t~i~v~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
+.|+|. .++.||++++|..+|+++|+||..-. + +. ..-.|.|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 345652 47889999999999999999998763 2 22 444566665
No 264
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.18 E-value=37 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=27.9
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTT 372 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T 372 (450)
+|.+.+. ++||++++|.++|++.|+++....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556665 789999999999999999998876544
No 265
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.93 E-value=40 Score=24.51 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=32.1
Q ss_pred EEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 126 TTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 126 t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
..|.+.|. +.+|+++++...|+++|+++.-....+.+ ..-.|.+..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 35666664 77899999999999999999876543322 223355544
No 266
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=69.74 E-value=24 Score=36.67 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=41.0
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
..|.+.+..+|+||.|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 467777777899999999999999999999988887544 44566788776
No 267
>PRK14633 hypothetical protein; Provisional
Probab=68.67 E-value=60 Score=28.96 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC--CC
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE--DR 347 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~--Dr 347 (450)
+-..+..++..+|+.+.+..+...++..+-+| |...+|-.+ +.++.+-+++...|.. -.+..|.+||+++ ||
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~l---ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSV---DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCH---HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 44567778999999999999887766655444 433444333 4789999999888863 2467899999987 55
Q ss_pred cchHHHHHHHHHHCCce
Q 044728 348 AGLLSDVTRIFRENGLS 364 (450)
Q Consensus 348 pGLL~~It~~l~~~gi~ 364 (450)
| |...-.+-.-.|=.
T Consensus 82 p--L~~~~~f~r~~G~~ 96 (150)
T PRK14633 82 Q--IFNIIQAQALVGFN 96 (150)
T ss_pred C--CCCHHHHHHhCCCe
Confidence 5 44455554444433
No 268
>PRK08526 threonine dehydratase; Provisional
Probab=68.64 E-value=82 Score=32.86 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=49.4
Q ss_pred CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-----ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccc
Q 044728 335 SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-----SQAVNVFYVVDASGNPVKSETIESVRKEIGLTILR 409 (450)
Q Consensus 335 ~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-----~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~ 409 (450)
.+...+.+.-+||||-|.+++..+.+.+.||....=.... ..+.=.+-+... +.++.++|.+.|.+....
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-----~~~~~~~~~~~l~~~g~~ 398 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-----GKEHQEEIRKILTEKGFN 398 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-----CHHHHHHHHHHHHHCCCC
Confidence 4567899999999999999999999999999876653322 222222323222 236788888888775544
Q ss_pred c
Q 044728 410 V 410 (450)
Q Consensus 410 ~ 410 (450)
.
T Consensus 399 ~ 399 (403)
T PRK08526 399 F 399 (403)
T ss_pred e
Confidence 3
No 269
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=68.56 E-value=11 Score=26.38 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=26.3
Q ss_pred EEEEeeCC---CcchHHHHHHHHHHCCceEEEEEE
Q 044728 339 SLELCCED---RAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 339 ~iev~~~D---rpGLL~~It~~l~~~gi~I~~AkI 370 (450)
.+++.+.+ .||.++++.++|++++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45555555 899999999999999999987754
No 270
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=68.09 E-value=32 Score=26.43 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=39.0
Q ss_pred EEEEee---CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCC-hHHHHHHHHHHhh
Q 044728 339 SLELCC---EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK-SETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~---~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~-~~~~~~L~~~l~~ 405 (450)
.+.+.+ .+.||++++|.++|++.||++...- | ++ ..=.|.|... .+.. +....+|.++|..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~~--~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDPT--KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEch--hhccchHHHHHHHHHHHh
Confidence 456643 5789999999999999999997763 3 22 2224545332 2222 2355677777765
No 271
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=67.96 E-value=14 Score=27.41 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.8
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728 344 CEDRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 344 ~~DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
..|+||.+++|.+.|++.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 358999999999999999999996653
No 272
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=67.64 E-value=16 Score=38.64 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=40.0
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-ee-eEEEEEeC
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ-AV-NVFYVVDA 386 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~-a~-D~F~v~~~ 386 (450)
.+.|=+...|+||-|+++-+.|+.+|||+..........+ .+ -.|||.-.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 3566667789999999999999999999999887765444 44 58889554
No 273
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.08 E-value=57 Score=25.26 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 133 RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 133 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
++.||+++++.++|+++|+||..-- + +. ..-.|.+... . .-+. .+.++.|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~-~-~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD-P-NGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc-c-cccc-hHHHHHHHHHHHh
Confidence 5889999999999999999998763 2 22 4445666652 1 1122 2356677777765
No 274
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.90 E-value=18 Score=25.52 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.4
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEE
Q 044728 344 CEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVV 384 (450)
Q Consensus 344 ~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~ 384 (450)
..|.||++++|.+.|+++|++|........+ +...=.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4688999999999999999999887553222 2233356553
No 275
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=65.76 E-value=3.3e+02 Score=33.59 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=115.0
Q ss_pred CCEEEEeecCCCCeEEEEEEcC-CC--cchHHHHHHHHHh-CCceEEEEEEE-ecCCeEEEEEEEEeCCCCC--CCchHH
Q 044728 23 PPRVTVDNTSNRKATLIKVDSA-NK--RGSLLELVQVLND-LDLIIRRAYIS-SDGEWFMDVFHVTDQNGNK--LSEDDV 95 (450)
Q Consensus 23 ~p~V~i~~~~~~~~~~V~V~~~-Dr--pGLl~~i~~~L~~-~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~--~~~~~~ 95 (450)
.+.+-++.+....+.-+.||.| || ..+-.+|-.+|.+ ++-...+-+.. ..+..+---|++....+.. ++..++
T Consensus 328 rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~l 407 (1528)
T PF05088_consen 328 RVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEAL 407 (1528)
T ss_pred ceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHH
Confidence 4677888888888888888874 33 3456777777766 45555555554 4556666667776666654 333333
Q ss_pred HHHHHHH-----------hCcCc-c-------------CC--------CC---------------cceeeec----cCCC
Q 044728 96 SERIQQS-----------LGPRA-R-------------SF--------RS---------------LRRSVGV----QAAL 123 (450)
Q Consensus 96 ~~~i~~~-----------L~~~~-~-------------~~--------~~---------------~~r~v~~----~~~~ 123 (450)
.+.|.++ |.... . ++ |. .+..+.+ ...+
T Consensus 408 e~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~ 487 (1528)
T PF05088_consen 408 EARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGP 487 (1528)
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCC
Confidence 3333322 21110 0 00 00 0011332 3345
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee---CC--eEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH---NS--RMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~~--~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
+...+.++.+.++..|+++.-+|...|+.|.+.+-+.. ++ ....-|.+.. ..+..+...+.++.+++.+..+..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999887763 22 3566788887 455545445667888888888877
Q ss_pred ccc
Q 044728 199 GDR 201 (450)
Q Consensus 199 ~~~ 201 (450)
|..
T Consensus 567 g~~ 569 (1528)
T PF05088_consen 567 GRA 569 (1528)
T ss_pred CCC
Confidence 654
No 276
>PRK14632 hypothetical protein; Provisional
Probab=65.35 E-value=67 Score=29.41 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC--CC
Q 044728 272 LLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE--DR 347 (450)
Q Consensus 272 Ll~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~--Dr 347 (450)
+-.-+..++..+|+.+.+..+...+++.+- .+|....|-.+ +.++.+-+.+...|.. -.+..|.|||+++ ||
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lr-V~ID~~~GV~l---dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVR-LFVDGPEGVTI---DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEE-EEEECCCCCCH---HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 455667788999999999997753344554 44443344333 4789999999888863 2467899999987 66
Q ss_pred cc
Q 044728 348 AG 349 (450)
Q Consensus 348 pG 349 (450)
|=
T Consensus 86 pL 87 (172)
T PRK14632 86 PF 87 (172)
T ss_pred cC
Confidence 63
No 277
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=64.59 E-value=33 Score=26.52 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 346 DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 346 DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
-.||++++|.+.|+++|+||...- + ++ ..=.|-+.. . .+.++.+++|.++|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 569999999999999999999874 2 33 222444432 2 2222356677777766
No 278
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.18 E-value=30 Score=27.25 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=29.3
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728 344 CEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA 386 (450)
Q Consensus 344 ~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~ 386 (450)
..+.||++++|.++|+++||+|.... | ++ ..=.|-|...
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~s 49 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPS 49 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhh
Confidence 35789999999999999999999874 3 33 3335666443
No 279
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=63.99 E-value=44 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEEEEE---cCCCcchHHHHHHHHHhCCceEEE
Q 044728 37 TLIKVD---SANKRGSLLELVQVLNDLDLIIRR 66 (450)
Q Consensus 37 ~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~ 66 (450)
+.|+|. .++.+|+.+++.++|.+.|++|.-
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 345553 478899999999999999999953
No 280
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.86 E-value=21 Score=25.14 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEee
Q 044728 132 GRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITS 173 (450)
Q Consensus 132 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~ 173 (450)
.+|.||.++++...|.++|++|........ ++...-.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 478899999999999999999977655322 222344555544
No 281
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=63.67 E-value=1.2e+02 Score=31.76 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW-THN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
+.....+.+.-+||||-|.+++..+...+.||...+-. ..+ +...-.+-+.. .+++..++|.+.|++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-------NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 44577889999999999999999777777799855544 222 22222222332 124566777777654
No 282
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=63.54 E-value=19 Score=36.95 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=42.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
.|+|.+.||-||..++-..|...+||+....|...| .-|+..++ ++.+..++|+.+|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~-----~IYln~p~---l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-----RIYLNFPE---LEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC-----eEEEeccc---cCHHHHHHHHHHHhc
Confidence 489999999999999999999999999999984333 24553332 222445555555553
No 283
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=63.04 E-value=92 Score=35.66 Aligned_cols=101 Identities=9% Similarity=0.025 Sum_probs=65.3
Q ss_pred CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH-Hhc
Q 044728 257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA-IKR 332 (450)
Q Consensus 257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~-L~~ 332 (450)
.+.+.|+|.+. +.||.++++..+|+++|++|..-...+ ++. .-.|.+.. ...+.+.+.|.+. ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~-s~~-sis~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP-DRQ-LLQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC-CCc-EEEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 45667788765 778999999999999999987554222 222 22344431 1223333444332 111
Q ss_pred cC---CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEE
Q 044728 333 RT---SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRA 368 (450)
Q Consensus 333 r~---~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~A 368 (450)
+. ..-.+|.|.+. .+||+..++..+|.+.+|++...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 11 23467888885 68999999999999999998554
No 284
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.58 E-value=57 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=27.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 127 TIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 127 ~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
.+.+.|. +.||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666664 789999999999999999998775433
No 285
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.65 E-value=87 Score=28.15 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=61.6
Q ss_pred cChHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC-
Q 044728 270 PKLLFDAVCTLTDMQYVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE- 345 (450)
Q Consensus 270 pGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~- 345 (450)
..++.-+..++..+|+.+.+.++...+ +.++-+|.=. ..|-.+ +.++++-+++...|... .+..|.+||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~-~g~v~l---ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDK-EGGVTL---DDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCC-CCCCCH---HHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 446667778899999999999999987 5666555433 322223 37889999998888743 356899999987
Q ss_pred -CCcchHHHHHHHHHHCCceE
Q 044728 346 -DRAGLLSDVTRIFRENGLSV 365 (450)
Q Consensus 346 -DrpGLL~~It~~l~~~gi~I 365 (450)
|||=.-.+=-..+....+.|
T Consensus 84 ldRpL~~~~~f~r~~G~~Vkv 104 (153)
T COG0779 84 LDRPLKTAEHFARFIGEKVKV 104 (153)
T ss_pred CCCCcCCHHHHHHhcCcEEEE
Confidence 78744333333333333333
No 286
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=61.37 E-value=18 Score=26.88 Aligned_cols=28 Identities=7% Similarity=0.353 Sum_probs=24.4
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEE
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVT 366 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~ 366 (450)
.|.+.+. +.||+++++..+|.+.||++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4566665 789999999999999999996
No 287
>PRK08841 aspartate kinase; Validated
Probab=61.10 E-value=2.1e+02 Score=29.72 Aligned_cols=112 Identities=11% Similarity=0.206 Sum_probs=67.3
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccCCCceEE
Q 044728 48 GSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTT 127 (450)
Q Consensus 48 GLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~~~~~t~ 127 (450)
+.++++.+.|.+.|+++.-- ++....+ .|.|.. ...++++..+.+. + ....+...
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i--~~~~~~~--~~~v~~---------~~~~~~~~~~~~~----------i--~~~~~~a~ 320 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNV--IEEADRA--QIVIKQ---------DACAKLKLVFDDK----------I--RNSESVSL 320 (392)
T ss_pred chHHHHHHHHHHcCCCEEEE--EecCCcE--EEEECH---------HHHHHHHHhCccc----------E--EEeCCEEE
Confidence 35789999999999888743 2222111 244421 1223333332211 1 12356788
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
|.+++...||+.+++..+|.+.|+||.... .++ ..-.|.|.. +..++..+.|++.+.
T Consensus 321 vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~---~s~-~~is~vv~~----------~~~~~av~~lH~~f~ 377 (392)
T PRK08841 321 LTLVGLEANGMVEHACNLLAQNGIDVRQCS---TEP-QSSMLVLDP----------ANVDRAANILHKTYV 377 (392)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCCEEEEE---CCC-cEEEEEEeH----------HHHHHHHHHHHHHHc
Confidence 999999999999999999999999995433 222 333344433 233555556666554
No 288
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.82 E-value=15 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=25.8
Q ss_pred EEEEEeCC---CcchHHHHHHHHHhCCceEEEEEE
Q 044728 127 TIELTGRD---RPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 127 ~i~v~~~D---rpGLl~~i~~~L~~~glnI~~A~i 158 (450)
.|++.+.+ .+|.++++..+|+++|++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35566554 899999999999999999976644
No 289
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.78 E-value=48 Score=24.02 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.3
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD 385 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~ 385 (450)
++.+.+. +.||+++++.+.|++.|+++......+.+ ..=.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 4556664 78999999999999999999887654422 222366643
No 290
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=60.23 E-value=48 Score=29.02 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=40.8
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC--CCc
Q 044728 276 AVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE--DRA 348 (450)
Q Consensus 276 i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~--Drp 348 (450)
+...+..+|+.+.+..+...++...-..+|.. ++. ++- +.++++-+.+...|.. -.+..|.+||+++ |||
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~l-ddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~ 75 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSL-DDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRP 75 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----H-HHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS-
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCH-HHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCc
Confidence 45678899999999999998765433344433 333 333 3778888888777754 2467899999987 454
No 291
>PRK08639 threonine dehydratase; Validated
Probab=59.62 E-value=1.2e+02 Score=31.60 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=43.6
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
.+.....+.+.-+||||-|.++...+...+.||...+-.. .+.....++..-. ..+++..++|.+.|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 3455788899999999999999996666666998775442 2211112222212 1134566777777764
No 292
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.83 E-value=62 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=26.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 044728 127 TIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 127 ~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
.|++.+. +.+|+++++...|+++|+++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999976544
No 293
>PRK11898 prephenate dehydratase; Provisional
Probab=57.96 E-value=50 Score=32.67 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=37.7
Q ss_pred ceEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEee
Q 044728 124 EHTTIELTGRD-RPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITS 173 (450)
Q Consensus 124 ~~t~i~v~~~D-rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~ 173 (450)
..+.+.+...+ +||.|+++-..|+.+|+|+..-......+ ...-.|+|.-
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 35666666655 69999999999999999999888766543 3445777765
No 294
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=57.36 E-value=83 Score=25.04 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=49.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK 198 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~ 198 (450)
.+.+.+.+.++|+.|.++-++-...|..|......+. ++++.--|.|.. ..++ +.|...|+++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 4678999999999999999999999999998888875 566666666654 2332 556677766554
No 295
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=57.01 E-value=63 Score=28.31 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=43.5
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEee
Q 044728 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMASVVYITS 173 (450)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~f~V~~ 173 (450)
....-..+.+.-.||.|.|+++-.++++.++||...+-.- .+|++.-+..+..
T Consensus 68 ~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 68 LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 3445677788889999999999999999999999887654 5788877777665
No 296
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.24 E-value=62 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=28.0
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTT 372 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T 372 (450)
++.+.+. ++||++++|...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 789999999999999999999886543
No 297
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=54.29 E-value=1.6e+02 Score=31.63 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=69.6
Q ss_pred ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH------H-
Q 044728 258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA------I- 330 (450)
Q Consensus 258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~------L- 330 (450)
.-..+.|.-|||||-|.+++.+|.. .||.+.+-.-.+.....+|+.....+ .+..+.|.+.|++. +
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~-----~~~~~~l~~~L~~~Gy~~~dls 396 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN-----PQERQEILARLNDGGYSVVDLT 396 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHcCCCeEECC
Confidence 4457889999999999999999997 57776655433332333444443222 23677777777642 0
Q ss_pred -------------hccCCC---ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728 331 -------------KRRTSE---GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG 374 (450)
Q Consensus 331 -------------~~r~~~---~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g 374 (450)
.++.+. .-+..+.=+-|||-|-++-.+| .-+-||...+=.-.|
T Consensus 397 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Yr~~~ 455 (499)
T TIGR01124 397 DDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHYRNHG 455 (499)
T ss_pred CCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEEecCC
Confidence 112222 3478888999999888876633 334477766654444
No 298
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=54.08 E-value=79 Score=32.97 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=45.7
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCc
Q 044728 34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS-SDG-EWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRA 107 (450)
Q Consensus 34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~ 107 (450)
+....+.|.-|||||-|.+++..+...+.||.+-+-. ..+ +++- ..+..+-.+ ++..++|.+.|.+..
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~-v~v~iE~~~-----~~h~~~i~~~L~~~G 392 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGP-ALIGIELND-----KEDFAGLLERMAAAD 392 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEE-EEEEEEeCC-----HHHHHHHHHHHHHCC
Confidence 3457899999999999999999888888899966654 222 3332 222223222 345677888887654
No 299
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=52.96 E-value=48 Score=26.34 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=41.1
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYV 383 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v 383 (450)
.|.+++.+.++|+.|.+|-++-...|..+-....++. ++++.--|-|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4789999999999999999999999999999888876 6777766766
No 300
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=52.52 E-value=30 Score=24.57 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=26.4
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEEEEEE
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVTRAEV 370 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI 370 (450)
.|++.+. +++|+++++.+.|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999977654
No 301
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=50.62 E-value=89 Score=22.20 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=24.9
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728 128 IELTG---RDRPGLLSEVFAVLSDLKCNVMGAE 157 (450)
Q Consensus 128 i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~ 157 (450)
+++.+ .+.||+++++...|+++|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 4779999999999999999997664
No 302
>PRK14646 hypothetical protein; Provisional
Probab=49.84 E-value=1.4e+02 Score=26.75 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccccccc
Q 044728 350 LLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD 413 (450)
Q Consensus 350 LL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~~~ 413 (450)
+...+..++.++|+.+........|..-.=..||...+|..++=..++.+.+++.+ +|++.|.
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~-~LD~~D~ 71 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASE-EIENSNL 71 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHH-HhCcCCC
Confidence 44556778889999999999998887655567785554555664577888888877 7777553
No 303
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=49.79 E-value=1e+02 Score=35.98 Aligned_cols=88 Identities=8% Similarity=0.109 Sum_probs=59.7
Q ss_pred HHHhhhc---CCCCEEEEeecCCC-CeEEEEE---EcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeC
Q 044728 14 FEKLVLR---MNPPRVTVDNTSNR-KATLIKV---DSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQ 85 (450)
Q Consensus 14 ~~~~~~~---~~~p~V~i~~~~~~-~~~~V~V---~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~ 85 (450)
|+.++.+ -..|.+.+...+.. ....+.| -.+...|+|..++..+..+||.+..+.+.+ .+|..+-+|+|...
T Consensus 204 y~~~~~~~~~~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 204 IQELLNRQVSSVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 5554442 23477777655522 2334444 347778999999999999999999999987 68888889999876
Q ss_pred CCCCCCchHHHHHHHH
Q 044728 86 NGNKLSEDDVSERIQQ 101 (450)
Q Consensus 86 ~g~~~~~~~~~~~i~~ 101 (450)
.+....+.++.+.+++
T Consensus 284 ~~~~~~~~~~~~~~~~ 299 (1002)
T PTZ00324 284 TADDNPDLSIEDRASL 299 (1002)
T ss_pred CCCCcccccHHHHHHh
Confidence 5543223345555555
No 304
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.69 E-value=92 Score=22.11 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=25.3
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728 127 TIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE 157 (450)
Q Consensus 127 ~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~ 157 (450)
.|++.+ .+.||+++++...|+++|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4779999999999999999997664
No 305
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=49.47 E-value=46 Score=25.49 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=27.3
Q ss_pred EEEEee---CCCcchHHHHHHHHHHCCceEEEEEEee
Q 044728 339 SLELCC---EDRAGLLSDVTRIFRENGLSVTRAEVTT 372 (450)
Q Consensus 339 ~iev~~---~DrpGLL~~It~~l~~~gi~I~~AkI~T 372 (450)
.|++.+ .+.+|+++++.+.|++.++++....-.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 466643 3789999999999999999998875443
No 306
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=48.83 E-value=2.6e+02 Score=30.09 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
......+.|.-+||||-|.+++.+|... ||...+-.-.+.....+|..-. +.+++..+.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 4457788899999999999999999984 6654443322222233443222 1134667778887764
No 307
>PRK00907 hypothetical protein; Provisional
Probab=47.96 E-value=87 Score=25.61 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE----eecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728 335 SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV----TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL 405 (450)
Q Consensus 335 ~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI----~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~ 405 (450)
|-.+.+.|.|.++++|...|.+++..+.-......+ +..|.-..=++.|+-.. .+++++|-++|.+
T Consensus 15 Pc~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats-----~eQld~iY~~L~~ 84 (92)
T PRK00907 15 PGTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES-----REQYDAAHQALRD 84 (92)
T ss_pred CCCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC-----HHHHHHHHHHHhh
Confidence 335899999999999999999999998876665555 44455444445454432 3677888888765
No 308
>PLN02317 arogenate dehydratase
Probab=47.46 E-value=1.2e+02 Score=31.52 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN 162 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~ 162 (450)
.|.|.+.-.|+||.|+++-.+|+.+|+|+.....-...
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~ 320 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQR 320 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecC
Confidence 57788888999999999999999999999988766543
No 309
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=47.25 E-value=52 Score=24.83 Aligned_cols=33 Identities=0% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 044728 54 VQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQN 86 (450)
Q Consensus 54 ~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~ 86 (450)
.......|+.+..=.|.|.|||.+..|-|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999876544
No 310
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.25 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=22.3
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceE
Q 044728 127 TIELTGR---DRPGLLSEVFAVLSDLKCNV 153 (450)
Q Consensus 127 ~i~v~~~---DrpGLl~~i~~~L~~~glnI 153 (450)
.|.+.|. +.||+++++.++|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4667774 77999999999999987776
No 311
>PRK08639 threonine dehydratase; Validated
Probab=46.65 E-value=1.1e+02 Score=31.88 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCc
Q 044728 34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DG-EWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRA 107 (450)
Q Consensus 34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~-g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~ 107 (450)
.....+.|.-|||||-|.+++..+...+.||.+-+-.- .+ +.. ..++..+-.+ .+..++|.+.|.+..
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~-~v~v~iE~~~-----~~h~~~i~~~L~~~G 403 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETG-PVLVGIELKD-----AEDYDGLIERMEAFG 403 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCce-EEEEEEEeCC-----HHHHHHHHHHHHHCC
Confidence 34578999999999999999997777777999876542 21 222 2222223222 345677888887654
No 312
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=46.45 E-value=93 Score=32.82 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS 173 (450)
Q Consensus 125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~ 173 (450)
.+.|.+..+|+||-|+++-.+|+.+|+|+......... ....-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 57788888999999999999999999999987766542 33345677765
No 313
>PRK14635 hypothetical protein; Provisional
Probab=46.40 E-value=1.4e+02 Score=26.90 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=57.7
Q ss_pred cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecC---CCCCCCcHHHHHHHHHHHHHHHhcc-CCCceEEEE
Q 044728 267 PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHV---DGNPISSEAERQRVINCLEAAIKRR-TSEGISLEL 342 (450)
Q Consensus 267 ~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~---~g~~~~~~~~~~~l~~~L~~~L~~r-~~~~t~iev 342 (450)
++..-+-.-+..++. .|+.+.+..+...++...-.++|... +|. +.- +.++.+.+.+...|... ....|.+||
T Consensus 3 ~~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~g-v~l-ddC~~vSr~is~~LD~~d~~~~Y~LEV 79 (162)
T PRK14635 3 VSEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGS-VSL-LECEQVSRKLKEELERISPDLDFTLKV 79 (162)
T ss_pred CcHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCC-cCH-HHHHHHHHHHHHHhCCCCCCCCeEEEE
Confidence 344445555566664 69999999998887654334444321 232 322 37889999998888642 235899999
Q ss_pred eeC--CCcchHHHHHHHHHHCCceE
Q 044728 343 CCE--DRAGLLSDVTRIFRENGLSV 365 (450)
Q Consensus 343 ~~~--DrpGLL~~It~~l~~~gi~I 365 (450)
+++ ||| |..--..-.-.|-.+
T Consensus 80 SSPGldRp--L~~~~~~~r~~G~~v 102 (162)
T PRK14635 80 SSAGAERK--LRLPEDLDRFRGIPV 102 (162)
T ss_pred cCCCCCCc--CCCHHHHHHhCCCEE
Confidence 987 555 444444444444443
No 314
>PRK08841 aspartate kinase; Validated
Probab=46.04 E-value=1.4e+02 Score=31.00 Aligned_cols=95 Identities=14% Similarity=0.250 Sum_probs=59.1
Q ss_pred CceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCC
Q 044728 257 KGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSE 336 (450)
Q Consensus 257 ~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~ 336 (450)
.+.+.|+|.+ +.++++.+.|+++|+++..-. +....+ .|.|.. ...++++..+...+ .....
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i-~~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKI-RNSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccE-EEeCC
Confidence 3455666644 357899999999999987542 221111 344431 12233322111100 01133
Q ss_pred ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEE
Q 044728 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
-.++.+.+...||+.+++.++|.+.||||...-
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999999999996544
No 315
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.65 E-value=37 Score=26.77 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 133 RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 133 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
++.||.+++|..+|+++|+||.-.. + ++ ..-.|.+..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 6889999999999999999998763 2 22 334565654
No 316
>PRK14634 hypothetical protein; Provisional
Probab=44.88 E-value=1.6e+02 Score=26.34 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccccc
Q 044728 350 LLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKD 412 (450)
Q Consensus 350 LL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~~ 412 (450)
+-.-+..++.++|+.+....+...|....=..||..+.|..++=..++.+.+++.. .|++.|
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~-~LD~~d 70 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGE-ALEASQ 70 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHH-Hhcccc
Confidence 34456667889999999999988876655566786666755665678888888876 777654
No 317
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=44.56 E-value=46 Score=35.23 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.5
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EE-EEEEEee
Q 044728 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MA-SVVYITS 173 (450)
Q Consensus 121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~-d~f~V~~ 173 (450)
...+.+.|.+..+|+||-|+++-++|+.+|+|+.....-...+. .. -.|+|.-
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 34456777777899999999999999999999998776654333 33 4676765
No 318
>PRK14644 hypothetical protein; Provisional
Probab=43.41 E-value=2.2e+02 Score=24.99 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=47.2
Q ss_pred HHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC--CCc
Q 044728 278 CTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE--DRA 348 (450)
Q Consensus 278 ~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~--Drp 348 (450)
.++..+|+.+.+......++ +++-+ +|. .. +-+.++.+-+.|...|.. ..+..|.+||+++ |||
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV-~Id-k~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp 74 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEV-ILN-SR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD 74 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEE-EEC-CC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC
Confidence 46789999999999998765 55544 442 21 124788898899888863 3467899999987 888
No 319
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=42.56 E-value=53 Score=23.43 Aligned_cols=31 Identities=10% Similarity=0.305 Sum_probs=25.6
Q ss_pred EEEEee---CCCcchHHHHHHHHHHCCceEEEEE
Q 044728 339 SLELCC---EDRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 339 ~iev~~---~DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.|.+.+ .+.||++++|...|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355554 4779999999999999999998775
No 320
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.65 E-value=56 Score=23.32 Aligned_cols=31 Identities=10% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEEee---CCCcchHHHHHHHHHHCCceEEEEE
Q 044728 339 SLELCC---EDRAGLLSDVTRIFRENGLSVTRAE 369 (450)
Q Consensus 339 ~iev~~---~DrpGLL~~It~~l~~~gi~I~~Ak 369 (450)
.|.+.+ .+.||+++++...|++.++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 3679999999999999999998775
No 321
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=41.11 E-value=45 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.6
Q ss_pred EEEEEEc-CCCcchHHHHHHHHHhCCceEEEE
Q 044728 37 TLIKVDS-ANKRGSLLELVQVLNDLDLIIRRA 67 (450)
Q Consensus 37 ~~V~V~~-~DrpGLl~~i~~~L~~~glnI~~A 67 (450)
..|+|.. ++.||..+++.+.|.+.|+||-=-
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3556664 577999999999999999999866
No 322
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.28 E-value=1.5e+02 Score=21.88 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=26.6
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 127 TIELTGR--DRPGLLSEVFAVLSDLKCNVMGAEVWT 160 (450)
Q Consensus 127 ~i~v~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t 160 (450)
.|.++|. ..+|+++++..+|++.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 468999999999999999997665444
No 323
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.11 E-value=1.6e+02 Score=22.27 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=27.0
Q ss_pred EEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEE
Q 044728 126 TTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEVW 159 (450)
Q Consensus 126 t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i~ 159 (450)
+.|++.+ .+.+|+++++..+|+++|+++......
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3466644 478899999999999999999866544
No 324
>PRK14641 hypothetical protein; Provisional
Probab=39.88 E-value=2.6e+02 Score=25.63 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=48.9
Q ss_pred HhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--C----CCceEEEEeeC--CCcchH
Q 044728 281 TDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--T----SEGISLELCCE--DRAGLL 351 (450)
Q Consensus 281 ~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~----~~~t~iev~~~--DrpGLL 351 (450)
..+|+.+.+..+...++ +.+-+ +|. .+|. ++- +.++.+-+.+.+.|... . ...|.|||+++ ||| |
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV-~ID-~~~g-v~l-DdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRp--L 93 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEV-LLD-ADTG-IRI-DQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEP--I 93 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEE-EEe-CCCC-CCH-HHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCc--C
Confidence 48899999999988754 55544 443 3333 222 37889999998888642 2 25899999987 555 3
Q ss_pred HHHHHHHHHCC
Q 044728 352 SDVTRIFRENG 362 (450)
Q Consensus 352 ~~It~~l~~~g 362 (450)
...-.+-.-.|
T Consensus 94 ~~~~~f~r~~G 104 (173)
T PRK14641 94 ILPRQYGRHVG 104 (173)
T ss_pred CCHHHHHHhCC
Confidence 33333333333
No 325
>PRK05925 aspartate kinase; Provisional
Probab=39.83 E-value=4.8e+02 Score=27.58 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=62.0
Q ss_pred eEEEEEEcC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcc
Q 044728 36 ATLIKVDSA-NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLR 114 (450)
Q Consensus 36 ~~~V~V~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~ 114 (450)
.+.|+|.+. ..+|.++++.+.|.+.|++|.-.. ++..+ -+|.|...+ .. ....+.|...|....
T Consensus 300 ~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~s---is~~i~~~~---~~-~~~~~~l~~~l~~~~------- 364 (440)
T PRK05925 300 QALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNLG---VYFTIDDDD---IS-EEYPQHLTDALSAFG------- 364 (440)
T ss_pred EEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCCE---EEEEEechh---cc-HHHHHHHHHHhcCCc-------
Confidence 345555432 256779999999999999996331 22222 135554322 11 223344444443321
Q ss_pred eeeeccCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEE
Q 044728 115 RSVGVQAALEHTTIELTGR--DRPGLLSEVFAVLSDLKCNVMG 155 (450)
Q Consensus 115 r~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~glnI~~ 155 (450)
.+ ....+...|.|+|. -.+|+++++..+|++.|+||..
T Consensus 365 -~i--~~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 -TV--SCEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred -eE--EEECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 11 23456778888874 2378999999999999999965
No 326
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=36.73 E-value=55 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 133 RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 133 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
.+++|+.+++..+|+++|+++.... | +. ..-.|.+..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 5789999999999999999998763 3 22 344566655
No 327
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=36.48 E-value=2e+02 Score=22.13 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728 133 RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY 195 (450)
Q Consensus 133 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~ 195 (450)
.-.||+++++.++|+++|+||.---. ++ ..-.|.+.. . .+. ++.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~---~-~~~-~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM---E-NAE-DTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh---h-hcC-hHHHHHHHHHHHH
Confidence 35689999999999999999987642 22 334455554 1 121 2256677777665
No 328
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.26 E-value=1.7e+02 Score=21.47 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=27.8
Q ss_pred EEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeE-EEEE
Q 044728 339 SLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNV-FYVV 384 (450)
Q Consensus 339 ~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~-F~v~ 384 (450)
++.+.+. +.||+++++.++|.+.++++. .+|.....+ |.|.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i-----~~~~s~~~is~vv~ 46 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV-----SQAANDLNLTFVVD 46 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE-----EEeCCCCeEEEEEe
Confidence 4556665 679999999999999877662 233344444 6663
No 329
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.04 E-value=42 Score=36.23 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH 161 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~ 161 (450)
.++|.|.||.|+..+|...|..+++|+....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999998764
No 330
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=35.70 E-value=1.9e+02 Score=24.86 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=32.8
Q ss_pred cCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEE
Q 044728 120 QAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVW 159 (450)
Q Consensus 120 ~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~ 159 (450)
..+.++..+.+.++ |-+|+|+.|.+.|++.|+.|.-...+
T Consensus 58 ~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty 100 (128)
T COG3603 58 QIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY 100 (128)
T ss_pred EecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec
Confidence 45677888888875 89999999999999999998765433
No 331
>PRK14645 hypothetical protein; Provisional
Probab=35.52 E-value=3.2e+02 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccccc
Q 044728 350 LLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKD 412 (450)
Q Consensus 350 LL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~~ 412 (450)
+-..+..++.++|+.+...++...|..-.=..||...+|..++=..++++.+.+.. +|++.|
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~-~LD~~d 72 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEA-ELDRLD 72 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-Hhcccc
Confidence 44456778889999999999987775544455675444556665678888888876 777654
No 332
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=34.67 E-value=1.4e+02 Score=23.86 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=36.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 044728 34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKL 90 (450)
Q Consensus 34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 90 (450)
.....+.+.+.| +......|..+|++|........++. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455677888888 67777888999999987654444222 3588999999854
No 333
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=34.11 E-value=1.1e+02 Score=23.08 Aligned_cols=33 Identities=12% Similarity=-0.074 Sum_probs=24.3
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEecCC
Q 044728 277 VCTLTDMQYVVYHATVIAESPEAYQEYYIRHVD 309 (450)
Q Consensus 277 ~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~ 309 (450)
...+...|+.+..=.+.|.||+.+..|.|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999998654
No 334
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=32.36 E-value=1.3e+02 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=25.4
Q ss_pred EEEEEcC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728 38 LIKVDSA--NKRGSLLELVQVLNDLDLIIRRAYISS 71 (450)
Q Consensus 38 ~V~V~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t 71 (450)
.|.|.+. .+||+.+++..+|.+.|+++.-....+
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555543 268999999999999999998544443
No 335
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=32.24 E-value=3.8e+02 Score=24.18 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=27.3
Q ss_pred EEEEEEecCCcChHHHHHHHHHhCCceEEEE
Q 044728 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHA 290 (450)
Q Consensus 260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A 290 (450)
..+.|.-+|+||-+..+-.=|+..|.||..-
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 4578889999999999999999999998853
No 336
>PRK14632 hypothetical protein; Provisional
Probab=32.23 E-value=3.9e+02 Score=24.36 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccCCCceEEE
Q 044728 49 SLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTI 128 (450)
Q Consensus 49 Ll~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~~~~~t~i 128 (450)
+-..+..++..+|+.+.+..+...+++.+-+|+ ..+.|-. -+.|+.+-+.+...+.. .++-.+.+.+
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~I-D~~~GV~---ldDC~~vSr~is~~LD~---------~d~i~~~Y~L 76 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRLFV-DGPEGVT---IDQCAEVSRHVGLALEV---------EDVISSAYVL 76 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEE-ECCCCCC---HHHHHHHHHHHHHHhcc---------cccCCCCeEE
Confidence 556677888999999999998754456665443 3334432 23566666666443310 0123457788
Q ss_pred EEEeCCCcchHHHHHHHHHhCCc
Q 044728 129 ELTGRDRPGLLSEVFAVLSDLKC 151 (450)
Q Consensus 129 ~v~~~DrpGLl~~i~~~L~~~gl 151 (450)
+|.+|.-.--|...-..-.-.|-
T Consensus 77 EVSSPGldRpL~~~~~f~r~iG~ 99 (172)
T PRK14632 77 EVSSPGLERPFFRAEQMSPYVGR 99 (172)
T ss_pred EEeCCCCCCcCCCHHHHHHhCCC
Confidence 88876444444444444444443
No 337
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=32.11 E-value=73 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.6
Q ss_pred EEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728 127 TIELTG-RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS 173 (450)
Q Consensus 127 ~i~v~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~ 173 (450)
.++|.+ ++.||.+++|.+.|+++|+||.--... .. .-.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEch
Confidence 455565 466999999999999999999988322 22 24465554
No 338
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.45 E-value=98 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKL 90 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 90 (450)
+...+.+...|...+ ..+...+.+.|.+|...-.....|+ .|++.|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 456777778775555 5566666789999986443334454 378899999854
No 339
>PRK00907 hypothetical protein; Provisional
Probab=31.34 E-value=1.9e+02 Score=23.69 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe----cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCc
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS----DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRA 107 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~ 107 (450)
.+-++|.+.+++++...|..++..+.-+.-..++.. .+.|..-++.|.-. +.+.++.|.+.|....
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at------s~eQld~iY~~L~~~~ 86 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE------SREQYDAAHQALRDHP 86 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC------CHHHHHHHHHHHhhCC
Confidence 378999999999999999999999887766666642 44566555555432 2457788888887643
No 340
>PRK02001 hypothetical protein; Validated
Probab=30.19 E-value=3.7e+02 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceEEEEeeC--CCcc
Q 044728 277 VCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCE--DRAG 349 (450)
Q Consensus 277 ~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~iev~~~--DrpG 349 (450)
..++..+|+.+.+..+... ..+-+ +| |.++. +.- +.++.+-++|.+.|... +..|.|||+++ |||=
T Consensus 12 e~~~~~~g~eLvdv~~~~~--~~lrV-~I-D~~~G-v~l-ddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRpL 79 (152)
T PRK02001 12 EELLEGPELFLVDLTISPD--NKIVV-EI-DGDEG-VWI-EDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSPL 79 (152)
T ss_pred HhhhhhcCcEEEEEEEEcC--CEEEE-EE-ECCCC-CCH-HHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCcC
Confidence 3456788999999987743 23433 34 33333 222 37899999998888643 47899999987 6663
No 341
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.44 E-value=4.1e+02 Score=23.88 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=55.4
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccCCCc
Q 044728 46 KRGSLLELVQVLNDLDLIIRRAYISSDG-EWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALE 124 (450)
Q Consensus 46 rpGLl~~i~~~L~~~glnI~~A~i~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~~~~ 124 (450)
-..++.-+-.++..+|+.+++..+...+ ++++-+|. +..|. ++ -+.++.+.+.+...... .++-.+
T Consensus 7 ~~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~i--d~~g~-v~-lddC~~vSr~is~~LD~---------edpi~~ 73 (153)
T COG0779 7 TEKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYI--DKEGG-VT-LDDCADVSRAISALLDV---------EDPIEG 73 (153)
T ss_pred HHHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEe--CCCCC-CC-HHHHHHHHHHHHHHhcc---------CCcccc
Confidence 3456777888999999999999999866 68886664 43333 22 22455555555433210 023346
Q ss_pred eEEEEEEeC--CCcchHHHHHHHHHhCCc
Q 044728 125 HTTIELTGR--DRPGLLSEVFAVLSDLKC 151 (450)
Q Consensus 125 ~t~i~v~~~--DrpGLl~~i~~~L~~~gl 151 (450)
.+.++|.+| ||| |......-.-.|-
T Consensus 74 ~Y~LEVSSPGldRp--L~~~~~f~r~~G~ 100 (153)
T COG0779 74 AYFLEVSSPGLDRP--LKTAEHFARFIGE 100 (153)
T ss_pred cEEEEeeCCCCCCC--cCCHHHHHHhcCc
Confidence 888898876 565 3333333333443
No 342
>PRK14636 hypothetical protein; Provisional
Probab=29.38 E-value=4.3e+02 Score=24.25 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccccc
Q 044728 350 LLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVK 411 (450)
Q Consensus 350 LL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~ 411 (450)
+-..+..++.++|+.+....+...|....=..||..+.|..++=..++++.+++.. +|++.
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~-~LD~~ 67 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSD-VFDEL 67 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-HhccC
Confidence 44567778899999999999888776654456675554445654577888888877 67654
No 343
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=28.03 E-value=2.5e+02 Score=20.82 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=25.9
Q ss_pred EEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEE
Q 044728 126 TTIELTGR--DRPGLLSEVFAVLSDLKCNVMGAEV 158 (450)
Q Consensus 126 t~i~v~~~--DrpGLl~~i~~~L~~~glnI~~A~i 158 (450)
..|.++|. .+||+++++..+|.+.|+++.....
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 35666663 3689999999999999999976543
No 344
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.80 E-value=3e+02 Score=21.60 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=45.1
Q ss_pred EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccccccc
Q 044728 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD 413 (450)
Q Consensus 339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~~~ 413 (450)
.+.|.=++|||-|.++.+.+. -+.||...+=.-.|.....+|.--. +.+.+.+++.+.|.+.-....|.
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~-----~~~~~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQ-----VPDADLDELKERLDALGYPYQEE 71 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEE-----eChHHHHHHHHHHHHcCCCeEEC
Confidence 466788999999999999994 3778877775545554444553211 11225678888887755544443
No 345
>PRK14637 hypothetical protein; Provisional
Probab=24.27 E-value=5.1e+02 Score=23.07 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccc
Q 044728 348 AGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRV 410 (450)
Q Consensus 348 pGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~ 410 (450)
-|.-..+..++.++|+.+...+....|..-.=..||....| ++=+.++++.+++.. .|+.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~iddC~~vSr~Is~-~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VGLDDCARVHRILVP-RLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHH-Hhcc
Confidence 47777889999999999999999988776444555744434 444567888887766 4443
No 346
>PRK14638 hypothetical protein; Provisional
Probab=23.85 E-value=5.2e+02 Score=22.97 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=54.2
Q ss_pred chHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccCCCceE
Q 044728 48 GSLLELVQVLNDLDLIIRRAYISSD-GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHT 126 (450)
Q Consensus 48 GLl~~i~~~L~~~glnI~~A~i~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~~~~~t 126 (450)
.+-..+..++..+|+.+++..+... +++.+-+|+ ..++|. ++ -+.|+.+-+.|...... .++-++.+
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~I-D~~~G~-v~-lddC~~vSr~is~~LD~---------~d~i~~~Y 76 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIII-DNPVGY-VS-VRDCELFSREIERFLDR---------EDLIEHSY 76 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEE-ECCCCC-cC-HHHHHHHHHHHHHHhcc---------ccccCCce
Confidence 3455677889999999999999874 567775553 334442 33 23566666666543310 01234567
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCc
Q 044728 127 TIELTGRDRPGLLSEVFAVLSDLKC 151 (450)
Q Consensus 127 ~i~v~~~DrpGLl~~i~~~L~~~gl 151 (450)
.++|.+|.-.--|......-...|-
T Consensus 77 ~LEVSSPGldRpL~~~~~f~r~~G~ 101 (150)
T PRK14638 77 TLEVSSPGLDRPLRGPKDYVRFTGK 101 (150)
T ss_pred EEEEeCCCCCCCCCCHHHHHHhCCC
Confidence 8888876444444444444444443
No 347
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.62 E-value=2.9e+02 Score=20.00 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEEeC---CCcchHHHHHHHHHhCCce
Q 044728 126 TTIELTGR---DRPGLLSEVFAVLSDLKCN 152 (450)
Q Consensus 126 t~i~v~~~---DrpGLl~~i~~~L~~~gln 152 (450)
..+.+.|. ++||+++++..+|.+.++.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 35677775 7899999999999764433
No 348
>PRK02047 hypothetical protein; Provisional
Probab=22.93 E-value=4.1e+02 Score=21.49 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe----cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcC
Q 044728 36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS----DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR 106 (450)
Q Consensus 36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~ 106 (450)
.+.++|.+++.+++...+..++..+...+..+.+.+ .+.|..-+..|.- .+.+.+..|-+.|...
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v------~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRA------TSREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 488999999999999999999999988877777753 3446554444433 2245667777777654
No 349
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=22.42 E-value=3e+02 Score=21.85 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=35.8
Q ss_pred CceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCC
Q 044728 257 KGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPI 313 (450)
Q Consensus 257 ~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~ 313 (450)
.....+.+...| +......|..+|+++........ +.. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~-~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP-GVG-RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC-CcE-EEEEEECCCCCEE
Confidence 345567777777 67777888899999886643332 222 4699999999854
No 350
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.39 E-value=3.2e+02 Score=20.04 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=26.0
Q ss_pred EEEEEec--CCcChHHHHHHHHHhCCceEEEEEEEec
Q 044728 261 VVNLRCP--DRPKLLFDAVCTLTDMQYVVYHATVIAE 295 (450)
Q Consensus 261 ~v~V~~~--DrpGLl~~i~~~L~~~glnI~~A~I~t~ 295 (450)
.|.+.|. ..||+++++..+|++.|++|.-....+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3455554 4589999999999999999975544343
No 351
>PRK14631 hypothetical protein; Provisional
Probab=21.82 E-value=6.2e+02 Score=23.14 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC----------------CCCCCChHHHHHHHHHHhhcccccccc
Q 044728 351 LSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA----------------SGNPVKSETIESVRKEIGLTILRVKDD 413 (450)
Q Consensus 351 L~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~----------------~g~~l~~~~~~~L~~~l~~~~l~~~~~ 413 (450)
-..+.-++..+|+.+........|..-.=..||..+ .+..++=++++.+.+++.. +|++.|.
T Consensus 11 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~-~LD~~d~ 88 (174)
T PRK14631 11 TDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGA-MLDVHDP 88 (174)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHH-Hhccccc
Confidence 345667788999999999999887664445557432 1234554678888888877 7777553
No 352
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=21.41 E-value=3.7e+02 Score=23.35 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=36.8
Q ss_pred HHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccccc
Q 044728 354 VTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKD 412 (450)
Q Consensus 354 It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~~~ 412 (450)
|..++.++|+.+...++...|....=..+|.. ++. ++=.+++++.+++.. .|+..|
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~lddc~~~sr~i~~-~LD~~d 57 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSLDDCEKVSRAISA-LLDAED 57 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----HHHHHHHHHHHGG-GTTTS-
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCHHHHHHHHHHHHH-HHcccc
Confidence 56778899999999999988876444444644 444 654678888888887 676644
No 353
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.98 E-value=2.5e+02 Score=22.59 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=33.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 044728 35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKL 90 (450)
Q Consensus 35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 90 (450)
....+.+...| +..+...|.+.|.+|...-..+..|.. .|++.|++|..+
T Consensus 66 ~~~~~~~~v~d----id~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~DP~G~~i 115 (119)
T cd08359 66 QGLILNFEVDD----VDAEYERLKAEGLPIVLPLRDEPWGQR--HFIVRDPNGVLI 115 (119)
T ss_pred ceEEEEEEECC----HHHHHHHHHhcCCCeeeccccCCCcce--EEEEECCCCCEE
Confidence 33456666766 677888888999998865333443422 367889999843
Done!