BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044730
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 40/202 (19%)
Query: 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDG----LELLHTKQ 167
L C D GL L +I ++ T DG LD F++ DG E H
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817
Query: 168 RREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFT-SLPPAVAEELFGSELPDKEDFSR 226
R E A+ G I I+ A S + +PP V
Sbjct: 818 RLNHLVEQ--ALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRV----------------- 858
Query: 227 VLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSV 286
+DN S HT++++ D+ GL +D+ ++QI+ I++
Sbjct: 859 -------------VIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITT-- 903
Query: 287 KGYRNMDLF-IRQTDGKKVVDP 307
G R +D+F +R G K+ DP
Sbjct: 904 YGMRAVDVFYVRDLLGMKITDP 925
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 33/167 (19%)
Query: 236 KASITVDNLLSPAH--TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMD 293
++ +TV+ P T L + CAD GLF I I RI + G
Sbjct: 740 RSPVTVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDT 799
Query: 294 LFIRQTDGKKVVDPKQQTALCFHLKEEMLH--------------------------PLRV 327
+++ +G +P Q L HL E+ L P RV
Sbjct: 800 FWVQDGEGCSFEEPHQLGRLN-HLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRV 858
Query: 328 MVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEI 374
++ N D ++ E+ G+ RP + +DVT AL + + I SA I
Sbjct: 859 VIDNTASDRHTVI----EVNGRDRPGLLHDVTSALSSASLQISSAHI 901
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 141 KVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQ 200
++ TT DGR LD I + + RR T MI E LAG +
Sbjct: 759 QIFTTSDGRALDTILINREFPIDEDEMRRANTISKMI----------EDVLAGKK----- 803
Query: 201 AFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQK 260
LP +A G + + K +T+ N LS T+++I+C D+
Sbjct: 804 ---RLPEVIATRTKGRK-----------RNKTFTVKPHVTISNSLSNKFTVIEIECLDRI 849
Query: 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLKE 319
GL ++ DL++ I RI++ G + +D F + G+K+ + +Q ++ LK
Sbjct: 850 GLLAEVTAVLADLSLDIHSARITTF--GEKVIDTFYVIDLVGQKITNENRQGSISVRLKA 907
Query: 320 EM 321
M
Sbjct: 908 VM 909
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
+N+ +V P + +S NS +++ C+DR GLL + T VL +L I
Sbjct: 818 RNKTFTVKPHVTIS--------NSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSA 869
Query: 141 KVMTTPDGRVLDLFFITD 158
++ TT +V+D F++ D
Sbjct: 870 RI-TTFGEKVIDTFYVID 886
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 192 AGPEYESLQAFTSLPPAVAEELFGSELP----DKEDFSRVLSTEVTQNKASITVDNLLSP 247
G +ES L + + L G P K T V + +DN S
Sbjct: 796 GGGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVPPRVLIDNNAST 855
Query: 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVD 306
HT++++ D+ GL YD+ R +L +QI+ +IS+ G + +D+F ++ G KV
Sbjct: 856 THTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTY--GEKAIDVFYVKDVFGLKVTH 913
Query: 307 PKQQTALCFHLKEEMLHPL 325
+ ++E +LH L
Sbjct: 914 ENK----LAQIRERLLHAL 928
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 307 PKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALG 366
P FH+ P RV++ N T ++ E+ G+ RP + YD+T AL L
Sbjct: 833 PHASRTRVFHV------PPRVLIDNNASTTHTVI----EVNGRDRPGLLYDLTRALTNLT 882
Query: 367 ICIFSAEI 374
+ I SA+I
Sbjct: 883 LQISSAKI 890
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 45/216 (20%)
Query: 99 QPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
+P SN+++ + DR+GL D ++ L + +V T+ G+ LD+F++ D
Sbjct: 730 RPGSNAAEVVI-----AAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784
Query: 159 --GLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGS 216
G CE+ A+ +LA ++L+A E GS
Sbjct: 785 VTGAPF---------GCENPRALR---------RLA----DALEAAGKGDALAVEPRRGS 822
Query: 217 ELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQ 276
E F+ S+T+DN S T+++ D+ GL + + +T D +
Sbjct: 823 EQTRAAAFAIA---------PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 277 IAYGRISSSVKGY--RNMDLF-IRQTDGKKVVDPKQ 309
I S+ + GY R +D F ++ T+G KV D ++
Sbjct: 874 IQ----SAHIDGYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 45/216 (20%)
Query: 99 QPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
+P SN+++ + DR+GL D ++ L + +V T+ G+ LD+F++ D
Sbjct: 730 RPGSNAAEVVI-----AAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784
Query: 159 --GLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGS 216
G CE+ A+ +LA ++L+A E GS
Sbjct: 785 VTGAPF---------GCENPRALR---------RLA----DALEAAGKGDALAVEPRRGS 822
Query: 217 ELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQ 276
E F+ S+T+DN S T+++ D+ GL + + +T D +
Sbjct: 823 EQTRAAAFAIA---------PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 277 IAYGRISSSVKGY--RNMDLF-IRQTDGKKVVDPKQ 309
I S+ + GY R +D F ++ T+G KV D ++
Sbjct: 874 IQ----SAHIDGYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 36/184 (19%)
Query: 141 KVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI--AVLGEYSISCEIQLAGPEYES 198
++ TT DGR LD I + + RR +I + G+ + I
Sbjct: 760 QIFTTSDGRALDTILINREFPIDEDETRRGANVGKLIEEVLSGKQRLPEMIATRTKSRRK 819
Query: 199 LQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCAD 258
AFT +PP S+T+ N LS T+++++C D
Sbjct: 820 KSAFT-IPP------------------------------SVTISNGLSNKFTVIEVECLD 848
Query: 259 QKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHL 317
+ GL D+ DL++ I RI++ G + +D F + G+KV + +Q ++ L
Sbjct: 849 RPGLLADMTAVIADLSLDIHSARITTF--GEKVIDTFYVTDLFGQKVTNDNRQASIAQRL 906
Query: 318 KEEM 321
K M
Sbjct: 907 KAVM 910
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
K ++ PS+ +S N +++ C+DR GLL D T V+ +L I
Sbjct: 819 KKSAFTIPPSVTIS--------NGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSA 870
Query: 141 KVMTTPDGRVLDLFFITDGL-ELLHTKQRREETCEHMIAVLGE 182
++ TT +V+D F++TD + + R+ + + AV+ E
Sbjct: 871 RI-TTFGEKVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSE 912
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
KN+ + PS++++ NS +++ C+DR GLL + T VL++L IQ
Sbjct: 818 KNKAFVIPPSVIIT--------NSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSA 869
Query: 141 KVMTTPDGRVLDLFFITDGL-ELLHTKQRREETCEHMIAVLG 181
++ TT +V+D F++ D + + + + RR + AV+
Sbjct: 870 RI-TTFGEKVIDTFYVADLVGQKISNENRRAYITARLKAVMA 910
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 42/187 (22%)
Query: 141 KVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQ 200
++ TT DGR LD ++ + RR T MI E LAG +
Sbjct: 759 QIFTTSDGRALDTIHVSREFPDDADELRRAATIGKMI----------EDVLAGRK----- 803
Query: 201 AFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKA-----SITVDNLLSPAHTLLQIK 255
LP +A + +NKA S+ + N LS T+++++
Sbjct: 804 ---RLPEVIATR----------------TKNRRKNKAFVIPPSVIITNSLSNKFTVIEVE 844
Query: 256 CADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALC 314
C D+ GL +I DL++ I RI++ G + +D F + G+K+ + ++ +
Sbjct: 845 CLDRPGLLSEITAVLSDLSLDIQSARITTF--GEKVIDTFYVADLVGQKISNENRRAYIT 902
Query: 315 FHLKEEM 321
LK M
Sbjct: 903 ARLKAVM 909
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
K++ + PS+ ++ NS +++ C+DR GLL + T VL++L IQ
Sbjct: 817 KSKAFVIPPSVNIT--------NSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSA 868
Query: 141 KVMTTPDGRVLDLFFITDGL-ELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT +V+D F++TD + + + +R M AV+ E E++ P
Sbjct: 869 RI-TTFGEKVIDTFYVTDLVGQKISGDSKRANITARMKAVMAEE--EDELRERMPSGIIA 925
Query: 200 QAFTSLPPAVAEELFGS 216
A T+ P +E+ GS
Sbjct: 926 PAATARTPPASEKKAGS 942
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 36/185 (19%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI--AVLGEYSISCEIQLAGPEYE 197
++ TT DGR LD ++ + RR T MI + G + I +
Sbjct: 757 AQIFTTSDGRALDTIHVSREFTDDADELRRAATIGRMIEDVLSGRKRLPEVIATRARNRK 816
Query: 198 SLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA 257
+AF +PP S+ + N LS T+++++C
Sbjct: 817 KSKAFV-IPP------------------------------SVNITNSLSNKFTVIEVECL 845
Query: 258 DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFH 316
D+ GL +I DL++ I RI++ G + +D F + G+K+ ++ +
Sbjct: 846 DRPGLLSEITAVLSDLSLDIQSARITTF--GEKVIDTFYVTDLVGQKISGDSKRANITAR 903
Query: 317 LKEEM 321
+K M
Sbjct: 904 MKAVM 908
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IR 297
+ VDN S HT+++I D+ G Y + R D+ +QI+ R+S+ G R +D F ++
Sbjct: 828 VIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTY--GERVVDSFYVK 885
Query: 298 QTDGKKVV 305
G K+V
Sbjct: 886 DVFGMKIV 893
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 46/192 (23%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD I+ E + RR I + L
Sbjct: 769 AQIYTTTDGRALDTIAISREYERDEDEGRRATRIGETIE------------------QVL 810
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKA-----SITVDNLLSPAHTLLQI 254
+ LP AVA +T Q+KA ++++N S +T++++
Sbjct: 811 EGKLRLPDAVARR----------------TTRGKQHKAFSVEPEVSINNQWSELYTVIEV 854
Query: 255 KCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTAL 313
D+ GL Y++ LN+ IA +++ G R D+F + G ++ P +Q A
Sbjct: 855 SGLDRPGLLYELTTAISKLNLNIASAHVATF--GERARDVFYVTDLLGAQINAPTRQAA- 911
Query: 314 CFHLKEEMLHPL 325
+K +LH L
Sbjct: 912 ---IKSALLHLL 920
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 67 VPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLY-LLKYCCVDRKGLLHD 125
+PDA + + +++ SV P + S N+ LY +++ +DR GLL++
Sbjct: 816 LPDAVARRTT-RGKQHKAFSVEPEV---------SINNQWSELYTVIEVSGLDRPGLLYE 865
Query: 126 ATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
T +++L I V T + R D+F++TD
Sbjct: 866 LTTAISKLNLNIASAHVATFGE-RARDVFYVTD 897
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 38/199 (19%)
Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD-GLELLHTKQRREETCE 174
C D+ L + + +F+I +++TT DG V D F IT+ EL+ +RRE
Sbjct: 693 CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE---- 748
Query: 175 HMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ 234
E +++ +Q E L A + +P +R L Q
Sbjct: 749 ------LEQALTLALQ-----SEKLPALSIVP------------------NRQLQHFTVQ 779
Query: 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDL 294
+N HT +++ D+ GL + + +LN+ + +I++ G + D
Sbjct: 780 TDVRFLQEN--KKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTV--GEKAEDF 835
Query: 295 FIRQTDGKKVVDPKQQTAL 313
FI + +D +Q+ L
Sbjct: 836 FILTNQFGQALDSQQREIL 854
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI 177
D+ L L F + ++MT+ DG V+D F + D + R +H+
Sbjct: 700 DQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTFMVLDQHGEAIDESRHAAVIKHLT 759
Query: 178 AVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKA 237
VL E +I+ LQ F + K DF L T+
Sbjct: 760 HVL-EAGRPTKIKTRRTP-NKLQHFN--------------VKTKVDF---LPTK------ 794
Query: 238 SITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIR 297
HTL++ D GL + RT DLNI + +I++ G R DLFI
Sbjct: 795 --------GKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTI--GERAEDLFIL 844
Query: 298 QTDGKKVVDPKQQTALCFHLKEEM 321
++ + +QQ L L E++
Sbjct: 845 TSEAGGRLSEEQQNELRDKLIEKL 868
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 46/192 (23%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD I+ E + RR I + L
Sbjct: 769 AQIYTTTDGRALDTIAISREYERDEDEGRRATRIGETIE------------------QVL 810
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKA-----SITVDNLLSPAHTLLQI 254
+ LP AVA +T Q+KA ++++N S +T++++
Sbjct: 811 EGKLRLPDAVARR----------------TTRGKQHKAFSVEPEVSINNQWSELYTVIEV 854
Query: 255 KCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTAL 313
D+ GL Y++ LN+ IA +++ G R D+F + G ++ P +Q A
Sbjct: 855 SGLDRPGLLYELTTAISKLNLNIASAHVATF--GERARDVFYVTDLLGAQINAPTRQAA- 911
Query: 314 CFHLKEEMLHPL 325
+K +LH L
Sbjct: 912 ---IKSALLHLL 920
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 67 VPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLY-LLKYCCVDRKGLLHD 125
+PDA + + +++ SV P + S N+ LY +++ +DR GLL++
Sbjct: 816 LPDAVARRTT-RGKQHKAFSVEPEV---------SINNQWSELYTVIEVSGLDRPGLLYE 865
Query: 126 ATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
T +++L I V T + R D+F++TD
Sbjct: 866 LTTAISKLNLNIASAHVATFGE-RARDVFYVTD 897
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 38/199 (19%)
Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD-GLELLHTKQRREETCE 174
C D+ L + + +F+I +++TT DG V D F IT+ EL+ +RRE
Sbjct: 693 CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE---- 748
Query: 175 HMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ 234
E +++ +Q E L A + P +R L Q
Sbjct: 749 ------LEQALTLALQ-----SEKLSALSITP------------------NRQLQHFTVQ 779
Query: 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDL 294
+N HT +++ D+ GL + + +LN+ + +I++ G + D
Sbjct: 780 TDVRFLHEN--KKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTV--GEKAEDF 835
Query: 295 FIRQTDGKKVVDPKQQTAL 313
FI + +D +Q+ L
Sbjct: 836 FILTNQFGQALDSQQREIL 854
>sp|B7VIS0|GLND_VIBSL [Protein-PII] uridylyltransferase OS=Vibrio splendidus (strain
LGP32) GN=glnD PE=3 SV=1
Length = 873
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 39/208 (18%)
Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEH 175
C D+ L L F + +VM + DG VLD F + D + R + +H
Sbjct: 698 CKDQAALFATVVAELDRRNFNVHDAQVMVSKDGHVLDTFIVLDQHGEAIDEARHKAVAKH 757
Query: 176 MIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQN 235
+ VL + P + +R +
Sbjct: 758 LTHVLAD---------------------GRPTKIK--------------TRRTPRNLQHF 782
Query: 236 KASITVDNL--LSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMD 293
K V+ L S TL++++ D GL + T +L+I + +I++ G R D
Sbjct: 783 KVKTRVEFLPTKSKKRTLMELRALDTPGLLAQVGATFAELDINLHGAKITTI--GERAED 840
Query: 294 LFIRQTDGKKVVDPKQQTALCFHLKEEM 321
LFI +D + +Q+ AL L E +
Sbjct: 841 LFILTSDAGGRLSEEQEQALRERLTEHV 868
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IR 297
+T++N S HT++++ D+ GL + + LN+ IA +++ G R D+F +
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATF--GERARDVFYVT 894
Query: 298 QTDGKKVVDPKQQTALCFHLKEEMLHPL 325
G ++ P +Q A +K ++H L
Sbjct: 895 DLLGARITAPTRQAA----IKRALVHLL 918
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 45/240 (18%)
Query: 84 LLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM 143
LL+ + L+ N+ S+ ++ +Y C DR L + + +I +++
Sbjct: 678 LLAGVETELLVKISNRFSAGGTEVFIY-----CKDRPNLFLKVVAAIGNKKLSIHDAQII 732
Query: 144 TTPDGRVLDLFFIT--DGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQA 201
T+ DG D F +T DG L ++R E A++ + + +L G E LQ
Sbjct: 733 TSLDGYAFDSFIVTELDGSLLKFDRRRVLEK-----AIINSLNSNELTKLQGSENHKLQH 787
Query: 202 FTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKG 261
F V E+ R L+TE T HT +++ D+ G
Sbjct: 788 FN-----VKTEV------------RFLNTEKT--------------THTEMELFTLDKAG 816
Query: 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM 321
L D+ +LN+ I +I++ G + D FI + + +++ +L L+ +
Sbjct: 817 LLADVSLVFSELNLSIQNAKITTI--GEKAQDFFILTNAKGEALSERERQSLSEKLQARL 874
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 33/175 (18%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD I+ + + RR MI + L
Sbjct: 769 AQIYTTTDGRALDTISISREYDRDEDEGRRATRIGEMIE------------------DVL 810
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
+ LP VA S+ +R E +T++N S +T++++ D+
Sbjct: 811 EGKLRLPEVVARRTVRSK-------ARPFVIE-----PEVTINNQWSDRYTVIEVSGLDR 858
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTAL 313
GL Y++ LN+ IA +++ G R D+F + G ++ P +Q+A+
Sbjct: 859 PGLLYELTTAISKLNLNIASAHVATF--GERARDVFYVTDLLGAQINAPTRQSAI 911
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD I+ + + RR I E L
Sbjct: 765 AQIYTTTDGRALDTISISREYDRDEDEGRRATRIGETIE------------------EVL 806
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
+ LP AVA F V+ EV ++N S +T++++ D+
Sbjct: 807 EGKLRLPEAVARRASSGSKAKLRAF--VVEPEVE-------INNNWSDRYTVIEVSGLDR 857
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLK 318
GL Y + LN+ IA +++ G R D+F + G ++ P +Q A +K
Sbjct: 858 PGLLYQLTTAISKLNLNIASAHVATF--GERARDVFYVTDLLGAQITAPTRQAA----IK 911
Query: 319 EEMLHPL 325
++H L
Sbjct: 912 RALVHLL 918
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 36/187 (19%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DG+ LD I+ + + RR +I E I ++L
Sbjct: 769 AQIYTTTDGQALDTIAISREYDRDEDEGRRAARIGEII----EQVIDGRLRLPDVVARRA 824
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
T L P V E + V+N S HT++++ D+
Sbjct: 825 AGKTRLRPFVVE-------------------------PKVIVNNQWSDRHTVIEVSGLDR 859
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLK 318
GL + + LN+ IA +++ G R D+F + G ++ P +Q A +K
Sbjct: 860 PGLLFQLTAAISKLNLNIASAHVATF--GERARDVFYVTDLLGARITAPTRQAA----IK 913
Query: 319 EEMLHPL 325
++H L
Sbjct: 914 RALIHLL 920
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 38/182 (20%)
Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD-GLELLHTKQRREETCE 174
C D+ L + + +F+I +++TT DG V D F IT+ EL+ +RRE E
Sbjct: 693 CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE--LE 750
Query: 175 HMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ 234
+ V + E L A + +P +R L Q
Sbjct: 751 QALTV-------------ALQSEKLPALSIVP------------------NRQLQHFTVQ 779
Query: 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDL 294
+N HT +++ D+ GL + + +LN+ + +I++ G + D
Sbjct: 780 TDVRFLQEN--KKEHTEMELVALDKAGLLAQVSQIFTELNLNLLNAKITTV--GEKAEDF 835
Query: 295 FI 296
FI
Sbjct: 836 FI 837
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
++R +V P + +S N+ +++ +DR GLL + T VL++L I
Sbjct: 823 RSRAFTVTPEVTIS--------NALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASA 874
Query: 141 KVMTTPDGRVLDLFFITD 158
+ TT +V+D F++TD
Sbjct: 875 HI-TTFGEKVIDTFYVTD 891
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 32/180 (17%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD + + + RR + +I + L
Sbjct: 763 AQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLIE------------------DVL 804
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
LP +A + R + VT +T+ N LS T+++++ D+
Sbjct: 805 SGRKKLPDVIASRTRSKK--------RSRAFTVTPE---VTISNALSNKFTVIEVEGLDR 853
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLK 318
GL ++ DL++ IA I++ G + +D F + G K+ +Q + LK
Sbjct: 854 TGLLSEVTAVLSDLSLDIASAHITTF--GEKVIDTFYVTDLVGSKITSENRQMNIAARLK 911
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
++R +V P + +S N+ +++ +DR GLL + T VL++L I
Sbjct: 823 RSRAFTVTPEVTIS--------NTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASA 874
Query: 141 KVMTTPDGRVLDLFFITD 158
+ TT +V+D F++TD
Sbjct: 875 HI-TTFGEKVIDTFYVTD 891
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD + + + RR + +I + L
Sbjct: 763 AQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLIE------------------DVL 804
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
LP +A + SR + +T+ N LS T+++++ D+
Sbjct: 805 SGRKRLPEVIASR------TRVKKRSRAFTV-----TPEVTISNTLSNKFTVIEVEGLDR 853
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLK 318
GL ++ DL++ IA I++ G + +D F + G K+ +Q + LK
Sbjct: 854 TGLLSEVTAVLSDLSLDIASAHITTF--GEKVIDTFYVTDLVGSKITSENRQMNIAARLK 911
>sp|Q58853|Y1458_METJA Uncharacterized protein MJ1458 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1458 PE=4 SV=1
Length = 218
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCE 174
++ G+LH T +L+EL I + DG++ ++ +G++ + +RR E+CE
Sbjct: 11 NKVGVLHKLTGILSELGGNITYTQQFIKDDGKIGFIYMEVEGIKDIEELKRRMESCE 67
>sp|Q8Y511|ADDA_LISMO ATP-dependent helicase/nuclease subunit A OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=addA PE=3
SV=1
Length = 1235
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN-MDLFIRQT 299
L QI+ A +KG FYD L T KD+ + +IS V+ N +L IR+
Sbjct: 662 LGQIRMAKKKGYFYDALLTYKDITVSETANKISDFVQQLNNWRELSIREN 711
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IR 297
I DN S +T++++ D+ GL YD+ RT NI IA I++ G + +D F ++
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY--GAQVVDSFYVK 897
Query: 298 QTDGKKVVDPKQQTALCFHLKEEML 322
G K+ +Q L L++ ++
Sbjct: 898 DMFGLKLHQKNRQETLEKKLRQAIV 922
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCE 174
DR GLL+D T+ L I V+ T +V+D F++ D L ++ R+ET E
Sbjct: 859 DRPGLLYDLTRTLAANNIYIASA-VIATYGAQVVDSFYVKDMFGLKLHQKNRQETLE 914
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 247 PAHT----LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGK 302
P HT L++ DQ GL + DLN+ + RIS+ G R DLFI +
Sbjct: 810 PTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARISTI--GERVEDLFILADSDR 867
Query: 303 KVVDPKQQTALCFHLKEEM 321
+ ++P+ + L L E +
Sbjct: 868 RALNPETRRKLEQRLTEAL 886
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284
IT DN S +T++++ D+ GL YD+ R N+ IA I++
Sbjct: 817 ITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIAT 862
>sp|Q9CNH1|GLND_PASMU [Protein-PII] uridylyltransferase OS=Pasteurella multocida (strain
Pm70) GN=glnD PE=3 SV=1
Length = 864
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
C D+ L H + +F+I +++T+ DG V D F IT+
Sbjct: 692 CQDQPNLFHKVVTTIGAKKFSIHDAQIITSHDGYVFDSFIITE 734
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 233 TQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNM 292
Q + + + N S T + + C DQ LF+ ++ T I +I +S GY
Sbjct: 669 NQTELLVKISNRFSEGGTEIFVYCQDQPNLFHKVVTTIGAKKFSIHDAQIITSHDGYVFD 728
Query: 293 DLFIRQTDGKKV 304
I + DGK V
Sbjct: 729 SFIITELDGKLV 740
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 140 VKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESL 199
++ TT DGR LD I+ + ++RR E +I E L+G +
Sbjct: 766 AQIFTTADGRALDTILISREFDRDEDERRRAERVGRLI----------EDVLSGKSWLPE 815
Query: 200 QAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQ 259
P ++F ++P + + + N LS ++++++ D+
Sbjct: 816 MIEKRTKPKRGAKVF--KIPPRAE-----------------IRNTLSNRFSVIEVEGLDR 856
Query: 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQ 309
GL +I T DL++ IA I++ G + +D F + G+K+ P +
Sbjct: 857 PGLLSEITGTLSDLSLDIASAHITTF--GEKVIDTFYVTDLTGQKIDSPAR 905
>sp|P43742|DNAA_HAEIN Chromosomal replication initiator protein DnaA OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=dnaA PE=3 SV=1
Length = 454
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 132 ELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGE-YSISCEIQ 190
ELE + RVK M G +D+ F+ D L+ + Q R T E++ V+ E Y I
Sbjct: 323 ELEGALNRVKAMQDFKGGDIDIDFVRDTLKDILALQERLVTIENIQKVVAEYYRIKVSDL 382
Query: 191 LAGPEYESLQAFTSLPPAVAEELFGSELPD 220
+ S+ + A+A+EL LP+
Sbjct: 383 KSKSRARSVTRPRQIAMALAKELTNRSLPE 412
>sp|A8GZ16|CAPP_SHEPA Phosphoenolpyruvate carboxylase OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=ppc PE=3 SV=1
Length = 878
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 268 RTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRV 327
RT+ L I IA R SS + G R+ + F+ T ++V+D + TA +LK+ +L L
Sbjct: 231 RTNTQLPIDIAPVRFSSWMGGDRDGNPFVTSTVTQEVLDRNRHTAARLYLKDVVL--LVN 288
Query: 328 MVTNRGPDTELLV 340
++ G + ELL
Sbjct: 289 ELSMEGANEELLA 301
>sp|P47386|Y140_MYCGE Uncharacterized ATP-dependent helicase MG140 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG140 PE=3 SV=1
Length = 1113
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 76 DWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGL----LHDATKVLT 131
DW+ LKNRL++ + VS++ Q SSN + L+K CC + K L D
Sbjct: 3 DWQWLKNRLVN-SKTKSVSFWLPQTSSNIIDIA-ELIK-CCSELKNTSINGLIDFLNQQD 59
Query: 132 ELEFTIQRVKVMTTPDGRVL 151
+LEF + R+K + DG+ L
Sbjct: 60 KLEFNLTRLKEIDVEDGKQL 79
>sp|Q6D8E5|GLND_ERWCT [Protein-PII] uridylyltransferase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glnD
PE=3 SV=1
Length = 904
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 226 RVLSTEVTQNKASITVDNLLSPAHT----LLQIKCADQKGLFYDILRTSKDLNIQIAYGR 281
RV T S+ + P HT +++ DQ GL I DLN+ + R
Sbjct: 798 RVRRTSPKLRHFSVPTEVNFLPTHTDRRSYMELSALDQPGLLARIGEIFSDLNLSLHGAR 857
Query: 282 ISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM 321
IS+ G R DLFI ++ + P+ + L L E +
Sbjct: 858 ISTI--GERVEDLFILADSDRRALKPELRLKLQERLTEAL 895
>sp|Q9LS08|BH032_ARATH Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1
SV=1
Length = 344
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 114 YCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT 157
+CC DR L+HD L L + ++ T GRV ++ F++
Sbjct: 219 FCCQDRTDLMHDVINALKSLRLRTLKAEIATV-GGRVKNILFLS 261
>sp|A0AL18|ADDA_LISW6 ATP-dependent helicase/nuclease subunit A OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=addA PE=3 SV=1
Length = 1235
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN-MDLFIRQT 299
L QI+ A +KG F+D L KD+ + A RIS + N +L IR+
Sbjct: 662 LGQIRMAKKKGYFFDALLAYKDITVSAAADRISDFITQLNNWRELSIREN 711
>sp|Q9R016|BIR1E_MOUSE Baculoviral IAP repeat-containing protein 1e OS=Mus musculus GN=Naip5
PE=1 SV=2
Length = 1403
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 159 GLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFG--- 215
L + H K CE ++AVL EI+ +G +E++ LP V+ ++
Sbjct: 1156 NLHVFHLKCDFLSNCESLMAVLASCKKLREIEFSGRCFEAMTFVNILPNFVSLKILNLKD 1215
Query: 216 SELPDK---EDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGL----FYDILR 268
+ PDK E F++ L + + + + + L+ +C L F+DIL
Sbjct: 1216 QQFPDKETSEKFAQALGSLRNLEELLVPTGDGIHQVAKLIVRQCLQLPCLRVLTFHDIL- 1274
Query: 269 TSKDLNIQIAYGRISSSVKGYRNMDL 294
D I+IA S + N+D+
Sbjct: 1275 -DDDSVIEIARAATSGGFQKLENLDI 1299
>sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1
SV=1
Length = 368
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 115 CCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT 157
CC DR LL D K L + + ++ TT GRV ++ F+T
Sbjct: 264 CCEDRSDLLPDMIKTLKAMRLKTLKAEI-TTVGGRVKNVLFVT 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,675,941
Number of Sequences: 539616
Number of extensions: 6244581
Number of successful extensions: 14451
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 14387
Number of HSP's gapped (non-prelim): 81
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)