Query 044730
Match_columns 419
No_of_seqs 349 out of 1918
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 8.3E-28 1.8E-32 264.4 25.2 171 235-416 663-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 1.1E-27 2.5E-32 264.2 25.7 172 235-417 687-879 (884)
3 PRK05007 PII uridylyl-transfer 99.9 3.2E-26 7E-31 252.7 25.4 182 104-323 696-880 (884)
4 PRK01759 glnD PII uridylyl-tra 99.9 4.5E-26 9.7E-31 250.8 24.8 179 104-321 672-853 (854)
5 PRK00275 glnD PII uridylyl-tra 99.9 2.2E-25 4.8E-30 246.1 26.2 182 107-324 702-888 (895)
6 TIGR01693 UTase_glnD [Protein- 99.9 6E-25 1.3E-29 243.1 25.4 171 236-416 655-849 (850)
7 PRK00275 glnD PII uridylyl-tra 99.9 1.4E-24 3.1E-29 239.7 26.3 178 236-418 688-887 (895)
8 PRK03059 PII uridylyl-transfer 99.9 1.9E-24 4.2E-29 237.7 25.8 181 104-322 673-855 (856)
9 PRK04374 PII uridylyl-transfer 99.9 2.9E-24 6.3E-29 235.9 25.8 180 104-322 685-867 (869)
10 TIGR01693 UTase_glnD [Protein- 99.9 3.6E-24 7.8E-29 236.9 24.9 183 104-321 663-849 (850)
11 cd04894 ACT_ACR-like_1 ACT dom 99.9 1.2E-25 2.7E-30 161.8 8.2 69 21-89 1-69 (69)
12 PRK05092 PII uridylyl-transfer 99.9 1.5E-23 3.2E-28 233.5 26.3 186 104-324 727-917 (931)
13 PRK04374 PII uridylyl-transfer 99.9 2.5E-23 5.5E-28 228.6 25.5 173 236-417 676-867 (869)
14 PRK05092 PII uridylyl-transfer 99.9 3.8E-23 8.2E-28 230.2 26.7 179 235-418 718-916 (931)
15 PRK03381 PII uridylyl-transfer 99.9 6.7E-23 1.4E-27 223.7 24.0 173 107-317 597-772 (774)
16 COG2844 GlnD UTP:GlnB (protein 99.9 4.2E-23 9.2E-28 216.6 21.2 176 235-417 670-862 (867)
17 COG2844 GlnD UTP:GlnB (protein 99.9 4.7E-23 1E-27 216.2 20.8 181 104-322 679-862 (867)
18 PRK03059 PII uridylyl-transfer 99.9 2.7E-22 5.9E-27 220.8 25.2 173 236-417 665-855 (856)
19 PRK03381 PII uridylyl-transfer 99.9 2.9E-22 6.4E-27 218.6 23.8 165 235-412 586-772 (774)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.5E-20 3.2E-25 145.1 11.1 73 341-417 1-73 (75)
21 cd04895 ACT_ACR_1 ACT domain-c 99.8 1.6E-20 3.6E-25 143.9 10.5 69 341-413 1-69 (72)
22 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.3E-19 5E-24 138.5 10.5 71 342-417 1-73 (75)
23 cd04897 ACT_ACR_3 ACT domain-c 99.8 6.8E-18 1.5E-22 130.4 11.2 73 249-323 1-74 (75)
24 cd04895 ACT_ACR_1 ACT domain-c 99.7 2.4E-16 5.2E-21 120.9 10.4 69 20-88 1-69 (72)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 4.5E-16 9.8E-21 120.2 10.7 75 250-324 1-75 (75)
26 cd04927 ACT_ACR-like_2 Second 99.7 9.1E-16 2E-20 119.9 11.1 73 111-183 2-74 (76)
27 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.5E-15 3.2E-20 118.1 11.0 73 342-418 1-74 (74)
28 cd04898 ACT_ACR-like_4 ACT dom 99.6 1.7E-16 3.7E-21 119.4 5.0 77 342-419 1-77 (77)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 3.7E-15 8E-20 115.5 10.7 71 110-180 2-73 (73)
30 PRK11589 gcvR glycine cleavage 99.6 2.4E-14 5.2E-19 130.7 16.4 138 105-297 4-143 (190)
31 cd04925 ACT_ACR_2 ACT domain-c 99.6 9.3E-15 2E-19 113.6 10.7 72 110-182 1-74 (74)
32 PRK11589 gcvR glycine cleavage 99.6 3.2E-14 6.9E-19 129.9 14.5 136 247-392 6-144 (190)
33 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.5E-14 3.3E-19 112.0 10.5 71 342-416 2-73 (73)
34 cd04927 ACT_ACR-like_2 Second 99.5 5.6E-14 1.2E-18 109.7 11.0 70 343-416 2-71 (76)
35 cd04928 ACT_TyrKc Uncharacteri 99.5 7.3E-13 1.6E-17 100.3 10.2 66 110-180 2-67 (68)
36 cd04926 ACT_ACR_4 C-terminal 99.3 3.1E-11 6.6E-16 93.2 10.3 67 110-177 2-68 (72)
37 COG2716 GcvR Glycine cleavage 99.3 5.2E-11 1.1E-15 104.5 12.7 158 107-319 3-161 (176)
38 cd04926 ACT_ACR_4 C-terminal 99.3 3.7E-11 8E-16 92.8 10.4 67 342-413 2-68 (72)
39 PRK00227 glnD PII uridylyl-tra 99.3 8.1E-11 1.8E-15 126.5 15.1 144 250-418 547-692 (693)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 6.5E-11 1.4E-15 90.4 10.5 70 110-180 1-70 (70)
41 COG2716 GcvR Glycine cleavage 99.2 6E-11 1.3E-15 104.1 10.9 155 247-413 3-160 (176)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 2.1E-10 4.5E-15 87.6 10.4 70 342-416 1-70 (70)
43 cd04928 ACT_TyrKc Uncharacteri 99.2 1.7E-10 3.7E-15 87.4 9.7 65 250-321 2-67 (68)
44 PRK00227 glnD PII uridylyl-tra 99.1 1E-09 2.2E-14 118.1 15.6 145 109-322 546-691 (693)
45 cd04873 ACT_UUR-ACR-like ACT d 99.0 7.5E-09 1.6E-13 78.5 10.5 68 111-179 2-69 (70)
46 cd04873 ACT_UUR-ACR-like ACT d 98.9 2E-08 4.3E-13 76.2 10.4 70 342-416 1-70 (70)
47 PF13740 ACT_6: ACT domain; PD 98.8 3.1E-08 6.7E-13 77.2 9.9 66 109-181 2-67 (76)
48 cd04893 ACT_GcvR_1 ACT domains 98.6 3.9E-07 8.4E-12 71.2 9.0 63 109-178 1-63 (77)
49 PF01842 ACT: ACT domain; Int 98.5 1.3E-06 2.9E-11 65.1 10.4 62 110-178 1-63 (66)
50 PF13740 ACT_6: ACT domain; PD 98.4 3.2E-06 6.9E-11 65.8 10.1 65 249-321 2-66 (76)
51 PF01842 ACT: ACT domain; Int 98.4 1.2E-06 2.6E-11 65.4 7.2 62 21-87 1-64 (66)
52 cd04870 ACT_PSP_1 CT domains f 98.4 2.1E-06 4.5E-11 66.6 8.1 64 111-180 1-64 (75)
53 cd04870 ACT_PSP_1 CT domains f 98.2 4E-06 8.7E-11 65.0 6.5 63 251-321 1-64 (75)
54 cd04872 ACT_1ZPV ACT domain pr 98.2 8.2E-06 1.8E-10 65.3 7.6 66 110-180 2-67 (88)
55 cd04875 ACT_F4HF-DF N-terminal 98.1 2.3E-05 4.9E-10 60.5 9.4 64 111-178 1-65 (74)
56 cd04894 ACT_ACR-like_1 ACT dom 98.1 1.3E-05 2.8E-10 58.7 6.9 67 110-179 1-67 (69)
57 PRK00194 hypothetical protein; 98.1 1.2E-05 2.6E-10 64.5 7.1 65 109-178 3-67 (90)
58 cd04869 ACT_GcvR_2 ACT domains 98.0 4.4E-05 9.6E-10 59.7 9.5 62 112-178 2-68 (81)
59 cd04893 ACT_GcvR_1 ACT domains 98.0 2.1E-05 4.5E-10 61.4 7.5 63 250-320 2-64 (77)
60 cd04875 ACT_F4HF-DF N-terminal 97.8 8.1E-05 1.7E-09 57.4 7.1 34 343-376 1-34 (74)
61 PF13291 ACT_4: ACT domain; PD 97.8 0.00018 3.8E-09 56.3 8.8 64 110-178 7-71 (80)
62 cd04872 ACT_1ZPV ACT domain pr 97.8 5.7E-05 1.2E-09 60.4 5.9 66 250-321 2-67 (88)
63 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00016 3.5E-09 56.5 8.0 34 251-284 1-34 (81)
64 PF13291 ACT_4: ACT domain; PD 97.7 0.00015 3.3E-09 56.6 7.7 66 341-414 6-71 (80)
65 PRK00194 hypothetical protein; 97.7 9.1E-05 2E-09 59.3 6.5 36 249-284 3-38 (90)
66 PRK13010 purU formyltetrahydro 97.7 0.0013 2.9E-08 64.2 14.8 67 108-178 8-76 (289)
67 PRK06027 purU formyltetrahydro 97.7 0.0014 3.1E-08 64.0 14.9 68 107-178 4-72 (286)
68 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00053 1.1E-08 52.5 9.3 62 112-178 2-63 (74)
69 COG4747 ACT domain-containing 97.6 0.0096 2.1E-07 49.6 16.7 107 111-292 5-111 (142)
70 PRK13011 formyltetrahydrofolat 97.6 0.0034 7.4E-08 61.3 16.4 66 108-178 6-72 (286)
71 TIGR00655 PurU formyltetrahydr 97.6 0.0032 6.9E-08 61.4 15.9 64 111-178 2-66 (280)
72 cd04898 ACT_ACR-like_4 ACT dom 97.5 0.00015 3.3E-09 55.2 4.3 70 252-321 3-74 (77)
73 COG3830 ACT domain-containing 97.4 0.00017 3.7E-09 57.2 4.2 68 109-181 3-70 (90)
74 COG4747 ACT domain-containing 97.3 0.012 2.6E-07 49.0 14.0 113 23-158 6-118 (142)
75 PRK13011 formyltetrahydrofolat 97.3 0.01 2.3E-07 58.0 16.3 35 249-283 7-41 (286)
76 COG3830 ACT domain-containing 97.3 0.0004 8.6E-09 55.1 5.1 68 249-322 3-70 (90)
77 COG0788 PurU Formyltetrahydrof 97.3 0.0013 2.9E-08 62.2 9.2 68 107-178 5-73 (287)
78 PRK06027 purU formyltetrahydro 97.3 0.013 2.7E-07 57.4 16.3 37 248-284 5-41 (286)
79 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0031 6.7E-08 48.1 9.6 61 252-318 2-62 (74)
80 TIGR00655 PurU formyltetrahydr 97.3 0.0091 2E-07 58.2 14.8 108 251-368 2-111 (280)
81 cd04905 ACT_CM-PDT C-terminal 97.2 0.003 6.5E-08 49.3 9.2 67 342-414 2-68 (80)
82 PRK07431 aspartate kinase; Pro 97.2 0.45 9.8E-06 51.3 30.4 296 22-416 272-580 (587)
83 PRK13562 acetolactate synthase 97.2 0.002 4.3E-08 50.8 7.4 66 343-416 4-69 (84)
84 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0044 9.4E-08 46.4 9.1 62 112-178 1-66 (73)
85 cd04889 ACT_PDH-BS-like C-term 97.1 0.0018 3.8E-08 46.8 6.6 47 112-158 1-47 (56)
86 PRK06737 acetolactate synthase 97.1 0.0025 5.5E-08 49.4 7.5 65 342-415 3-67 (76)
87 cd04877 ACT_TyrR N-terminal AC 97.1 0.0037 7.9E-08 48.1 8.2 34 111-144 2-35 (74)
88 PRK13010 purU formyltetrahydro 97.0 0.016 3.4E-07 56.8 14.1 35 249-283 9-43 (289)
89 PRK08178 acetolactate synthase 97.0 0.0061 1.3E-07 49.3 8.9 68 106-179 5-72 (96)
90 cd04889 ACT_PDH-BS-like C-term 97.0 0.0031 6.6E-08 45.6 6.5 47 344-393 1-47 (56)
91 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0068 1.5E-07 45.4 8.4 34 343-376 3-36 (66)
92 CHL00100 ilvH acetohydroxyacid 96.9 0.0047 1E-07 55.8 8.8 66 342-416 3-68 (174)
93 cd04877 ACT_TyrR N-terminal AC 96.9 0.0029 6.2E-08 48.7 6.4 59 343-414 2-60 (74)
94 cd04888 ACT_PheB-BS C-terminal 96.9 0.0071 1.5E-07 46.3 8.7 63 111-178 2-65 (76)
95 PRK08178 acetolactate synthase 96.9 0.0044 9.6E-08 50.1 7.3 65 341-415 8-72 (96)
96 cd04931 ACT_PAH ACT domain of 96.9 0.0081 1.8E-07 48.3 8.8 69 341-416 14-82 (90)
97 cd04909 ACT_PDH-BS C-terminal 96.9 0.01 2.2E-07 44.6 9.0 36 110-145 2-37 (69)
98 PRK06737 acetolactate synthase 96.9 0.0082 1.8E-07 46.6 8.4 64 110-178 3-66 (76)
99 TIGR00119 acolac_sm acetolacta 96.8 0.01 2.2E-07 52.8 9.6 64 111-180 3-67 (157)
100 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.0089 1.9E-07 44.4 8.0 47 344-392 2-48 (71)
101 COG0788 PurU Formyltetrahydrof 96.8 0.0068 1.5E-07 57.5 8.7 37 248-284 6-42 (287)
102 cd04908 ACT_Bt0572_1 N-termina 96.8 0.013 2.7E-07 44.0 8.7 38 110-147 2-39 (66)
103 PRK11895 ilvH acetolactate syn 96.8 0.011 2.4E-07 52.7 9.7 65 110-180 3-68 (161)
104 TIGR00119 acolac_sm acetolacta 96.7 0.0081 1.7E-07 53.4 8.5 65 343-416 3-67 (157)
105 PRK11152 ilvM acetolactate syn 96.7 0.013 2.7E-07 45.6 8.5 63 110-178 4-66 (76)
106 cd04874 ACT_Af1403 N-terminal 96.7 0.013 2.7E-07 43.9 8.5 47 111-157 2-48 (72)
107 PRK13562 acetolactate synthase 96.7 0.011 2.3E-07 46.7 7.9 65 111-179 4-68 (84)
108 cd04909 ACT_PDH-BS C-terminal 96.7 0.021 4.5E-07 42.9 9.3 63 342-414 2-64 (69)
109 PRK11152 ilvM acetolactate syn 96.7 0.0084 1.8E-07 46.6 7.2 64 342-415 4-67 (76)
110 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.014 3.1E-07 44.3 8.6 63 111-178 2-65 (79)
111 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.0087 1.9E-07 44.4 7.0 45 112-156 2-47 (71)
112 CHL00100 ilvH acetohydroxyacid 96.6 0.015 3.3E-07 52.5 9.4 65 110-180 3-68 (174)
113 cd04888 ACT_PheB-BS C-terminal 96.6 0.021 4.6E-07 43.6 8.9 63 343-414 2-65 (76)
114 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.021 4.6E-07 43.3 8.9 34 343-376 2-35 (79)
115 cd04878 ACT_AHAS N-terminal AC 96.6 0.024 5.1E-07 42.2 9.0 62 111-178 2-64 (72)
116 cd04878 ACT_AHAS N-terminal AC 96.5 0.023 5E-07 42.2 8.8 63 343-414 2-64 (72)
117 PRK11895 ilvH acetolactate syn 96.5 0.02 4.4E-07 51.1 9.6 66 342-416 3-68 (161)
118 cd04903 ACT_LSD C-terminal ACT 96.5 0.021 4.5E-07 42.5 8.3 33 344-376 2-34 (71)
119 cd04904 ACT_AAAH ACT domain of 96.5 0.018 3.9E-07 44.4 7.9 63 344-414 3-65 (74)
120 cd04903 ACT_LSD C-terminal ACT 96.4 0.025 5.5E-07 42.0 8.3 46 112-157 2-48 (71)
121 PRK08577 hypothetical protein; 96.4 0.036 7.9E-07 48.0 10.1 71 104-178 51-122 (136)
122 cd04905 ACT_CM-PDT C-terminal 96.3 0.043 9.3E-07 42.7 9.5 67 110-178 2-68 (80)
123 PRK11899 prephenate dehydratas 96.3 0.018 3.9E-07 56.1 8.7 59 341-404 194-252 (279)
124 cd04902 ACT_3PGDH-xct C-termin 96.3 0.019 4.1E-07 43.4 7.2 47 112-158 2-49 (73)
125 cd02116 ACT ACT domains are co 96.3 0.033 7.2E-07 38.2 7.9 47 112-158 1-47 (60)
126 cd04882 ACT_Bt0572_2 C-termina 96.3 0.021 4.4E-07 42.1 7.0 33 344-376 2-34 (65)
127 cd04882 ACT_Bt0572_2 C-termina 96.3 0.024 5.3E-07 41.7 7.3 45 112-156 2-47 (65)
128 cd04886 ACT_ThrD-II-like C-ter 96.2 0.019 4.2E-07 42.8 6.9 62 23-87 1-67 (73)
129 cd04902 ACT_3PGDH-xct C-termin 96.2 0.023 5E-07 42.9 7.2 46 345-392 3-48 (73)
130 cd04880 ACT_AAAH-PDT-like ACT 96.2 0.039 8.4E-07 42.3 8.5 64 346-415 4-67 (75)
131 PRK08577 hypothetical protein; 96.2 0.09 2E-06 45.5 11.5 54 245-298 52-105 (136)
132 cd04884 ACT_CBS C-terminal ACT 96.1 0.04 8.6E-07 41.9 8.1 62 112-178 2-65 (72)
133 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.065 1.4E-06 38.7 9.0 46 112-157 1-46 (71)
134 PRK04435 hypothetical protein; 96.1 0.061 1.3E-06 47.3 10.2 70 104-178 64-134 (147)
135 cd04874 ACT_Af1403 N-terminal 96.1 0.042 9.1E-07 40.9 8.1 34 343-376 2-35 (72)
136 cd04883 ACT_AcuB C-terminal AC 96.1 0.062 1.3E-06 40.5 9.0 49 342-392 2-50 (72)
137 PRK07431 aspartate kinase; Pro 96.0 2.8 6.1E-05 45.2 27.4 188 111-375 272-474 (587)
138 cd04901 ACT_3PGDH C-terminal A 95.9 0.011 2.4E-07 44.3 3.8 45 112-157 2-46 (69)
139 cd04929 ACT_TPH ACT domain of 95.6 0.049 1.1E-06 42.1 6.7 63 344-414 3-65 (74)
140 cd04884 ACT_CBS C-terminal ACT 95.6 0.072 1.6E-06 40.4 7.6 33 344-376 2-34 (72)
141 cd04901 ACT_3PGDH C-terminal A 95.5 0.019 4.2E-07 42.9 4.1 45 344-392 2-46 (69)
142 PF13710 ACT_5: ACT domain; PD 95.5 0.039 8.5E-07 41.2 5.5 56 350-415 1-57 (63)
143 PF13710 ACT_5: ACT domain; PD 95.2 0.076 1.7E-06 39.6 6.4 56 118-178 1-56 (63)
144 cd04931 ACT_PAH ACT domain of 95.2 0.21 4.5E-06 40.1 9.4 70 247-321 12-82 (90)
145 PRK07334 threonine dehydratase 95.2 0.12 2.5E-06 53.2 9.9 67 341-414 326-394 (403)
146 PRK06635 aspartate kinase; Rev 95.1 0.8 1.7E-05 46.9 15.8 106 249-372 262-374 (404)
147 cd04876 ACT_RelA-SpoT ACT dom 95.1 0.17 3.6E-06 36.4 8.1 33 344-376 1-33 (71)
148 PRK06291 aspartate kinase; Pro 95.1 2 4.4E-05 44.9 19.0 134 248-416 320-461 (465)
149 cd04883 ACT_AcuB C-terminal AC 95.1 0.19 4.1E-06 37.8 8.5 48 110-157 2-50 (72)
150 PRK07334 threonine dehydratase 95.1 0.14 3E-06 52.6 10.0 65 109-178 326-394 (403)
151 PRK06635 aspartate kinase; Rev 95.1 2.4 5.2E-05 43.4 19.1 108 109-279 262-373 (404)
152 PLN02551 aspartokinase 95.0 0.9 2E-05 48.2 16.1 126 247-394 364-494 (521)
153 cd02116 ACT ACT domains are co 94.9 0.13 2.9E-06 35.0 6.7 48 23-70 1-49 (60)
154 cd04880 ACT_AAAH-PDT-like ACT 94.9 0.26 5.7E-06 37.6 8.9 64 252-319 2-66 (75)
155 TIGR00656 asp_kin_monofn aspar 94.9 2.2 4.7E-05 43.7 18.1 104 248-371 259-370 (401)
156 COG0527 LysC Aspartokinases [A 94.8 3.5 7.5E-05 43.0 19.5 133 247-416 305-444 (447)
157 PRK04435 hypothetical protein; 94.8 0.29 6.3E-06 43.0 10.0 73 241-318 61-133 (147)
158 cd04930 ACT_TH ACT domain of t 94.4 0.14 2.9E-06 43.2 6.6 53 341-397 41-93 (115)
159 PRK08210 aspartate kinase I; R 94.1 4.3 9.3E-05 41.6 18.3 127 248-416 270-400 (403)
160 PRK10872 relA (p)ppGpp synthet 94.0 0.27 5.9E-06 54.0 9.6 65 109-178 666-731 (743)
161 cd04904 ACT_AAAH ACT domain of 93.8 0.45 9.7E-06 36.5 8.0 48 252-301 3-51 (74)
162 PRK10622 pheA bifunctional cho 93.8 0.26 5.6E-06 50.3 8.5 58 341-403 297-354 (386)
163 COG1707 ACT domain-containing 93.8 0.22 4.7E-06 44.2 6.7 40 110-149 3-42 (218)
164 PRK10872 relA (p)ppGpp synthet 93.6 0.49 1.1E-05 52.1 10.7 75 239-318 655-730 (743)
165 COG0077 PheA Prephenate dehydr 93.6 0.3 6.6E-06 47.3 8.1 55 340-398 193-247 (279)
166 PRK11092 bifunctional (p)ppGpp 93.5 0.38 8.2E-06 52.8 9.7 65 109-178 626-690 (702)
167 PF13840 ACT_7: ACT domain ; P 93.4 0.4 8.6E-06 35.9 6.9 45 341-394 6-54 (65)
168 PRK06382 threonine dehydratase 93.4 0.97 2.1E-05 46.5 11.9 122 29-178 273-398 (406)
169 cd04871 ACT_PSP_2 ACT domains 93.3 0.091 2E-06 41.6 3.3 61 112-178 2-71 (84)
170 cd04929 ACT_TPH ACT domain of 93.2 0.58 1.2E-05 36.1 7.6 49 252-302 3-52 (74)
171 cd04885 ACT_ThrD-I Tandem C-te 92.9 0.74 1.6E-05 34.5 7.8 60 345-414 2-61 (68)
172 PRK09034 aspartate kinase; Rev 92.9 2.7 5.9E-05 43.9 14.6 122 248-393 307-434 (454)
173 PRK09436 thrA bifunctional asp 92.9 3.7 8E-05 46.2 16.4 114 247-376 313-434 (819)
174 TIGR00656 asp_kin_monofn aspar 92.8 11 0.00024 38.5 18.7 32 248-279 336-370 (401)
175 cd04885 ACT_ThrD-I Tandem C-te 92.6 0.88 1.9E-05 34.1 7.8 60 113-178 2-61 (68)
176 TIGR00691 spoT_relA (p)ppGpp s 92.4 0.68 1.5E-05 50.8 9.6 65 109-178 610-674 (683)
177 PRK11092 bifunctional (p)ppGpp 92.3 1 2.2E-05 49.5 10.9 65 248-318 625-689 (702)
178 cd04930 ACT_TH ACT domain of t 92.2 0.82 1.8E-05 38.5 7.9 51 250-302 42-93 (115)
179 PRK06291 aspartate kinase; Pro 92.2 13 0.00029 38.9 18.7 106 108-279 320-431 (465)
180 TIGR01127 ilvA_1Cterm threonin 92.0 2.4 5.2E-05 43.0 12.7 93 62-178 277-373 (380)
181 PF13840 ACT_7: ACT domain ; P 91.7 1.1 2.4E-05 33.5 7.3 32 248-279 5-40 (65)
182 TIGR00719 sda_beta L-serine de 91.6 0.69 1.5E-05 43.0 7.4 49 341-391 148-196 (208)
183 TIGR00657 asp_kinases aspartat 91.5 19 0.00042 37.3 18.9 106 248-373 301-413 (441)
184 PRK08818 prephenate dehydrogen 91.5 0.46 1E-05 48.2 6.6 49 340-393 294-343 (370)
185 TIGR00691 spoT_relA (p)ppGpp s 91.2 1.7 3.7E-05 47.8 11.0 65 248-318 609-673 (683)
186 PRK08210 aspartate kinase I; R 91.0 7.2 0.00016 39.9 15.0 101 17-139 268-372 (403)
187 COG1707 ACT domain-containing 91.0 1 2.2E-05 40.0 7.4 48 343-392 4-51 (218)
188 PRK09181 aspartate kinase; Val 91.0 21 0.00046 37.5 18.6 107 248-376 328-439 (475)
189 PRK09084 aspartate kinase III; 90.8 11 0.00023 39.4 16.2 104 247-367 304-413 (448)
190 TIGR00719 sda_beta L-serine de 90.5 1.4 2.9E-05 41.1 8.3 53 106-158 145-198 (208)
191 PRK11899 prephenate dehydratas 90.3 1.8 4E-05 42.1 9.4 53 249-303 194-247 (279)
192 COG0440 IlvH Acetolactate synt 90.3 1.5 3.3E-05 39.0 7.9 68 109-181 4-71 (163)
193 cd04871 ACT_PSP_2 ACT domains 90.2 0.18 3.9E-06 39.8 1.9 29 251-279 1-30 (84)
194 PRK11898 prephenate dehydratas 89.4 1.7 3.6E-05 42.5 8.3 67 342-414 197-264 (283)
195 COG0317 SpoT Guanosine polypho 89.4 1.4 3E-05 48.1 8.3 65 109-178 627-691 (701)
196 PRK11790 D-3-phosphoglycerate 89.0 0.85 1.8E-05 47.0 6.2 48 340-391 337-384 (409)
197 PLN02317 arogenate dehydratase 88.8 1.8 3.9E-05 44.0 8.2 54 341-397 283-349 (382)
198 PRK08198 threonine dehydratase 88.7 7.9 0.00017 39.7 13.1 67 107-178 325-395 (404)
199 cd04906 ACT_ThrD-I_1 First of 88.6 4.1 9E-05 32.0 8.6 61 111-178 3-64 (85)
200 PRK11790 D-3-phosphoglycerate 88.3 1 2.2E-05 46.4 6.2 50 108-158 337-386 (409)
201 TIGR01268 Phe4hydrox_tetr phen 88.1 2.1 4.5E-05 44.2 8.2 68 341-415 16-83 (436)
202 COG0077 PheA Prephenate dehydr 87.9 3 6.4E-05 40.6 8.7 54 248-303 193-247 (279)
203 COG0317 SpoT Guanosine polypho 87.6 3.4 7.3E-05 45.2 9.8 46 239-284 616-662 (701)
204 PRK09181 aspartate kinase; Val 87.2 43 0.00092 35.3 17.7 35 248-284 401-437 (475)
205 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.0 8 0.00017 28.0 9.0 45 343-393 3-50 (66)
206 KOG2663 Acetolactate synthase, 86.9 1.1 2.4E-05 42.5 4.9 66 108-180 76-143 (309)
207 PRK06349 homoserine dehydrogen 86.6 3 6.5E-05 43.2 8.6 52 339-394 346-397 (426)
208 PRK09034 aspartate kinase; Rev 86.5 45 0.00098 34.8 17.8 33 108-140 307-342 (454)
209 PLN02551 aspartokinase 86.4 49 0.0011 35.2 18.7 112 107-284 364-480 (521)
210 PRK09436 thrA bifunctional asp 86.2 43 0.00093 37.8 17.9 112 106-279 312-429 (819)
211 PRK06545 prephenate dehydrogen 85.9 2.5 5.5E-05 42.6 7.5 38 339-376 288-325 (359)
212 PRK08961 bifunctional aspartat 85.8 24 0.00051 40.1 15.8 104 247-369 320-429 (861)
213 PRK06382 threonine dehydratase 85.3 4.6 9.9E-05 41.5 9.2 68 341-414 330-398 (406)
214 cd04919 ACT_AK-Hom3_2 ACT doma 84.8 5.3 0.00011 29.1 7.0 45 343-393 3-50 (66)
215 PRK08526 threonine dehydratase 84.6 11 0.00024 38.7 11.6 93 63-178 299-394 (403)
216 PRK08198 threonine dehydratase 84.0 7.9 0.00017 39.6 10.2 71 341-419 327-398 (404)
217 TIGR01270 Trp_5_monoox tryptop 83.9 3.5 7.7E-05 42.7 7.4 67 341-414 31-97 (464)
218 PRK13581 D-3-phosphoglycerate 83.8 2.9 6.2E-05 44.6 7.1 49 341-391 452-500 (526)
219 COG3978 Acetolactate synthase 83.7 8.9 0.00019 29.9 7.7 67 109-181 3-69 (86)
220 cd04891 ACT_AK-LysC-DapG-like_ 83.5 5.5 0.00012 27.9 6.5 32 112-143 3-35 (61)
221 cd04913 ACT_AKii-LysC-BS-like_ 83.1 11 0.00023 27.8 8.2 31 111-141 3-34 (75)
222 PRK09466 metL bifunctional asp 82.9 61 0.0013 36.6 17.2 104 247-371 315-424 (810)
223 COG4492 PheB ACT domain-contai 82.7 8.1 0.00018 33.2 7.8 68 107-178 70-137 (150)
224 cd04937 ACT_AKi-DapG-BS_2 ACT 82.5 6.5 0.00014 28.9 6.6 28 343-370 3-33 (64)
225 PRK10622 pheA bifunctional cho 82.4 6.6 0.00014 40.1 8.7 53 249-303 297-350 (386)
226 TIGR01127 ilvA_1Cterm threonin 80.7 11 0.00023 38.3 9.7 67 342-414 306-373 (380)
227 TIGR01327 PGDH D-3-phosphoglyc 80.7 3.6 7.7E-05 43.9 6.4 49 341-391 451-499 (525)
228 PRK13581 D-3-phosphoglycerate 80.1 5.1 0.00011 42.7 7.3 45 248-292 451-495 (526)
229 cd04906 ACT_ThrD-I_1 First of 80.0 16 0.00035 28.6 8.4 62 251-319 3-64 (85)
230 PRK08639 threonine dehydratase 79.9 18 0.00039 37.3 11.1 85 75-178 317-401 (420)
231 cd04932 ACT_AKiii-LysC-EC_1 AC 79.5 17 0.00038 27.8 8.3 27 256-284 11-37 (75)
232 cd04890 ACT_AK-like_1 ACT doma 78.9 13 0.00029 26.7 7.2 37 350-394 12-48 (62)
233 cd04892 ACT_AK-like_2 ACT doma 78.8 11 0.00023 26.7 6.7 32 343-374 2-36 (65)
234 TIGR00657 asp_kinases aspartat 77.9 91 0.002 32.3 19.5 32 248-279 377-411 (441)
235 TIGR01270 Trp_5_monoox tryptop 77.8 9.5 0.00021 39.7 8.1 54 247-302 29-84 (464)
236 cd04916 ACT_AKiii-YclM-BS_2 AC 77.6 13 0.00029 26.8 6.9 45 343-393 3-50 (66)
237 COG0440 IlvH Acetolactate synt 77.4 15 0.00033 32.7 8.2 67 251-323 6-72 (163)
238 PRK06349 homoserine dehydrogen 76.5 11 0.00024 38.9 8.4 50 108-158 347-396 (426)
239 PRK06545 prephenate dehydrogen 76.5 4.5 9.7E-05 40.8 5.4 43 104-146 285-327 (359)
240 PRK14646 hypothetical protein; 75.7 39 0.00085 29.9 10.4 96 261-369 8-103 (155)
241 PRK14634 hypothetical protein; 75.4 39 0.00084 29.9 10.4 95 260-367 7-101 (155)
242 cd04912 ACT_AKiii-LysC-EC-like 75.4 26 0.00056 26.6 8.2 29 251-279 3-34 (75)
243 cd04912 ACT_AKiii-LysC-EC-like 74.7 27 0.00059 26.4 8.2 63 110-178 2-67 (75)
244 cd04924 ACT_AK-Arch_2 ACT doma 74.6 29 0.00062 24.9 9.1 59 343-416 3-64 (66)
245 PRK11898 prephenate dehydratas 74.5 20 0.00043 35.0 9.1 67 249-319 196-264 (283)
246 PLN02317 arogenate dehydratase 74.3 17 0.00037 37.0 8.8 53 249-303 283-350 (382)
247 cd04937 ACT_AKi-DapG-BS_2 ACT 73.9 32 0.00068 25.1 8.1 28 111-138 3-33 (64)
248 cd04936 ACT_AKii-LysC-BS-like_ 73.8 16 0.00034 25.9 6.4 42 344-393 3-47 (63)
249 cd04932 ACT_AKiii-LysC-EC_1 AC 73.7 35 0.00076 26.1 8.6 39 348-394 11-49 (75)
250 cd04935 ACT_AKiii-DAPDC_1 ACT 73.1 39 0.00085 25.8 8.9 56 117-178 12-67 (75)
251 cd04923 ACT_AK-LysC-DapG-like_ 73.0 17 0.00037 25.8 6.4 42 344-393 3-47 (63)
252 COG2150 Predicted regulator of 72.9 5.9 0.00013 35.1 4.4 34 109-142 93-128 (167)
253 PRK08841 aspartate kinase; Val 72.8 1.1E+02 0.0023 31.4 14.3 92 248-371 257-348 (392)
254 PF05088 Bac_GDH: Bacterial NA 72.5 44 0.00095 40.2 12.6 80 340-419 488-568 (1528)
255 cd04919 ACT_AK-Hom3_2 ACT doma 72.1 34 0.00074 24.7 8.4 32 111-142 3-37 (66)
256 TIGR01268 Phe4hydrox_tetr phen 72.0 22 0.00047 36.8 9.0 66 249-319 16-82 (436)
257 KOG2663 Acetolactate synthase, 72.0 6.2 0.00013 37.5 4.6 36 341-376 77-112 (309)
258 PRK14645 hypothetical protein; 71.6 53 0.0012 29.0 10.3 94 260-366 9-102 (154)
259 COG2150 Predicted regulator of 71.4 13 0.00029 32.9 6.2 42 251-295 95-138 (167)
260 cd04922 ACT_AKi-HSDH-ThrA_2 AC 71.4 35 0.00076 24.5 8.4 30 111-140 3-35 (66)
261 PRK14636 hypothetical protein; 70.1 50 0.0011 29.9 10.0 97 258-367 3-99 (176)
262 TIGR01327 PGDH D-3-phosphoglyc 69.8 9.8 0.00021 40.5 6.2 51 107-157 449-500 (525)
263 COG0527 LysC Aspartokinases [A 69.5 1.5E+02 0.0033 31.0 18.0 109 107-284 305-419 (447)
264 cd04935 ACT_AKiii-DAPDC_1 ACT 68.6 34 0.00074 26.1 7.5 56 257-319 12-67 (75)
265 cd04915 ACT_AK-Ectoine_2 ACT d 67.3 19 0.0004 26.8 5.6 34 343-376 4-39 (66)
266 TIGR02079 THD1 threonine dehyd 67.3 67 0.0014 33.1 11.5 67 107-178 323-390 (409)
267 cd04920 ACT_AKiii-DAPDC_2 ACT 67.0 19 0.00041 26.4 5.5 28 343-370 2-32 (63)
268 PRK14630 hypothetical protein; 66.9 76 0.0016 27.7 10.1 92 258-366 6-97 (143)
269 cd04913 ACT_AKii-LysC-BS-like_ 66.8 47 0.001 24.1 7.9 26 349-374 10-35 (75)
270 cd04890 ACT_AK-like_1 ACT doma 66.7 39 0.00084 24.2 7.2 29 112-140 3-34 (62)
271 cd04868 ACT_AK-like ACT domain 66.3 13 0.00028 25.5 4.5 32 343-374 2-36 (60)
272 PRK08818 prephenate dehydrogen 65.6 14 0.00031 37.5 6.1 48 19-67 294-342 (370)
273 cd04891 ACT_AK-LysC-DapG-like_ 64.4 24 0.00052 24.5 5.6 43 348-393 8-50 (61)
274 cd04868 ACT_AK-like ACT domain 63.3 13 0.00029 25.5 4.0 30 111-140 2-34 (60)
275 COG3978 Acetolactate synthase 61.7 34 0.00074 26.7 6.0 50 341-392 3-52 (86)
276 PRK10820 DNA-binding transcrip 60.8 11 0.00023 40.2 4.4 34 343-376 2-35 (520)
277 cd04933 ACT_AK1-AT_1 ACT domai 60.5 77 0.0017 24.5 8.4 26 257-284 12-37 (78)
278 PRK12483 threonine dehydratase 60.5 2.4E+02 0.0052 30.1 15.8 147 17-178 342-502 (521)
279 cd04921 ACT_AKi-HSDH-ThrA-like 60.5 70 0.0015 24.0 9.0 34 343-376 3-39 (80)
280 PRK14640 hypothetical protein; 60.4 1.2E+02 0.0026 26.7 10.3 94 261-369 7-100 (152)
281 PRK09466 metL bifunctional asp 59.1 87 0.0019 35.3 11.3 107 16-140 313-425 (810)
282 PRK12483 threonine dehydratase 58.6 1.1E+02 0.0023 32.8 11.4 157 107-319 343-502 (521)
283 PRK09084 aspartate kinase III; 58.1 1.1E+02 0.0023 32.0 11.2 107 16-136 302-414 (448)
284 cd04924 ACT_AK-Arch_2 ACT doma 58.0 66 0.0014 22.9 8.5 33 110-142 2-37 (66)
285 cd04892 ACT_AK-like_2 ACT doma 57.9 61 0.0013 22.5 8.2 30 111-140 2-34 (65)
286 COG0779 Uncharacterized protei 56.7 1.2E+02 0.0027 26.7 9.6 92 260-368 8-101 (153)
287 PRK14647 hypothetical protein; 56.4 1.4E+02 0.0031 26.4 10.3 92 262-368 10-101 (159)
288 PRK14631 hypothetical protein; 56.3 1.6E+02 0.0034 26.7 10.6 96 261-369 9-120 (174)
289 COG4492 PheB ACT domain-contai 55.6 65 0.0014 27.8 7.3 66 341-414 72-137 (150)
290 cd04918 ACT_AK1-AT_2 ACT domai 55.4 79 0.0017 23.1 8.9 34 343-376 3-38 (65)
291 PRK14637 hypothetical protein; 54.1 1.5E+02 0.0034 26.0 10.1 92 259-366 7-98 (151)
292 PRK09224 threonine dehydratase 53.7 1.7E+02 0.0036 31.1 11.9 64 108-178 327-391 (504)
293 TIGR01124 ilvA_2Cterm threonin 53.6 2.1E+02 0.0045 30.4 12.5 64 108-178 324-387 (499)
294 PRK14639 hypothetical protein; 53.5 1.5E+02 0.0031 25.8 9.5 89 266-369 3-91 (140)
295 cd04933 ACT_AK1-AT_1 ACT domai 53.2 55 0.0012 25.4 6.1 39 349-395 12-50 (78)
296 PRK08526 threonine dehydratase 53.1 81 0.0018 32.4 9.2 69 341-414 326-394 (403)
297 PRK00092 ribosome maturation p 52.7 1.6E+02 0.0035 25.8 10.4 91 262-367 9-99 (154)
298 cd04917 ACT_AKiii-LysC-EC_2 AC 52.5 82 0.0018 22.7 6.9 57 343-416 3-62 (64)
299 cd04934 ACT_AK-Hom3_1 CT domai 51.5 72 0.0016 24.2 6.5 53 258-319 13-65 (73)
300 PRK05925 aspartate kinase; Pro 51.2 3.1E+02 0.0067 28.6 14.5 118 248-394 299-419 (440)
301 PRK14638 hypothetical protein; 49.4 1.8E+02 0.004 25.5 10.3 93 262-368 10-102 (150)
302 PRK14633 hypothetical protein; 49.1 1E+02 0.0022 27.0 8.0 87 37-137 10-97 (150)
303 PRK14633 hypothetical protein; 49.1 1.9E+02 0.004 25.4 10.4 91 262-368 6-96 (150)
304 PF02012 BNR: BNR/Asp-box repe 49.0 11 0.00023 18.7 1.0 7 52-58 1-7 (12)
305 cd04914 ACT_AKi-DapG-BS_1 ACT 48.5 27 0.0006 25.9 3.7 30 111-140 3-33 (67)
306 PRK10820 DNA-binding transcrip 48.4 27 0.00058 37.2 5.0 34 111-144 2-35 (520)
307 cd04916 ACT_AKiii-YclM-BS_2 AC 48.2 98 0.0021 22.0 8.4 33 110-142 2-37 (66)
308 cd04936 ACT_AKii-LysC-BS-like_ 48.0 93 0.002 21.7 8.6 30 111-140 2-34 (63)
309 cd04934 ACT_AK-Hom3_1 CT domai 45.1 1.1E+02 0.0025 23.1 6.8 53 350-414 13-65 (73)
310 PRK14632 hypothetical protein; 43.6 2.5E+02 0.0053 25.3 10.2 89 262-366 10-98 (172)
311 PRK08841 aspartate kinase; Val 43.3 1.2E+02 0.0027 31.0 8.7 94 17-139 255-348 (392)
312 cd04923 ACT_AK-LysC-DapG-like_ 43.1 1.1E+02 0.0025 21.3 8.6 30 111-140 2-34 (63)
313 PF13670 PepSY_2: Peptidase pr 42.8 44 0.00095 25.9 4.2 37 34-73 31-67 (83)
314 PLN02550 threonine dehydratase 42.6 2.6E+02 0.0055 30.4 11.2 126 109-281 417-543 (591)
315 COG3603 Uncharacterized conser 42.4 76 0.0017 26.8 5.6 36 341-378 63-101 (128)
316 PF02576 DUF150: Uncharacteris 41.5 1.4E+02 0.0031 25.6 7.7 86 266-366 2-87 (141)
317 PRK00907 hypothetical protein; 41.5 1.9E+02 0.004 23.3 7.7 68 341-414 17-84 (92)
318 PRK00907 hypothetical protein; 41.4 1.4E+02 0.0031 23.9 7.0 64 109-177 17-83 (92)
319 PLN02550 threonine dehydratase 41.0 5.1E+02 0.011 28.2 14.4 117 18-140 415-540 (591)
320 PF05088 Bac_GDH: Bacterial NA 40.8 7.6E+02 0.017 30.2 21.9 175 9-183 331-568 (1528)
321 cd04921 ACT_AKi-HSDH-ThrA-like 40.6 1.5E+02 0.0033 22.1 8.6 33 110-142 2-37 (80)
322 PRK14643 hypothetical protein; 40.2 2.7E+02 0.0059 24.8 10.4 95 261-369 10-107 (164)
323 PRK08961 bifunctional aspartat 39.9 2.5E+02 0.0055 31.9 11.3 105 17-137 319-429 (861)
324 PRK02047 hypothetical protein; 38.8 1.9E+02 0.0041 23.1 7.4 44 107-150 14-59 (91)
325 cd04911 ACT_AKiii-YclM-BS_1 AC 37.2 94 0.002 24.1 5.1 57 257-322 12-68 (76)
326 TIGR02079 THD1 threonine dehyd 35.5 2.7E+02 0.0058 28.6 9.8 66 341-414 325-390 (409)
327 PRK14632 hypothetical protein; 34.5 2.1E+02 0.0046 25.7 7.8 86 37-136 14-100 (172)
328 cd08357 Glo_EDI_BRP_like_18 Th 34.2 58 0.0013 26.2 3.9 45 354-400 77-121 (125)
329 cd04918 ACT_AK1-AT_2 ACT domai 34.2 1.8E+02 0.004 21.1 8.6 29 251-279 3-33 (65)
330 PF04083 Abhydro_lipase: Parti 33.0 1.2E+02 0.0027 22.4 5.0 32 127-159 2-33 (63)
331 PF14042 DUF4247: Domain of un 32.4 47 0.001 28.6 3.1 26 4-29 69-94 (132)
332 cd07253 Glo_EDI_BRP_like_2 Thi 32.3 99 0.0021 24.5 5.0 51 344-400 71-121 (125)
333 cd04920 ACT_AKiii-DAPDC_2 ACT 31.9 77 0.0017 23.1 3.8 28 111-138 2-32 (63)
334 KOG2797 Prephenate dehydratase 31.1 1.1E+02 0.0024 30.2 5.6 131 257-392 190-338 (377)
335 TIGR01124 ilvA_2Cterm threonin 28.4 3.2E+02 0.0069 29.0 9.1 63 341-414 325-387 (499)
336 COG3603 Uncharacterized conser 28.3 3.1E+02 0.0067 23.3 7.0 36 247-284 61-99 (128)
337 COG3283 TyrR Transcriptional r 27.9 58 0.0013 33.1 3.2 34 343-376 2-35 (511)
338 PRK00341 hypothetical protein; 27.4 3.2E+02 0.007 21.8 7.4 65 342-414 18-83 (91)
339 PRK08639 threonine dehydratase 27.3 4.2E+02 0.009 27.3 9.6 66 341-414 336-401 (420)
340 PRK04998 hypothetical protein; 27.1 3.1E+02 0.0068 21.6 7.1 44 107-150 13-56 (88)
341 PRK00630 nickel responsive reg 27.0 3.2E+02 0.0069 24.0 7.4 59 25-87 71-130 (148)
342 PRK14639 hypothetical protein; 26.8 3.6E+02 0.0077 23.3 7.7 87 37-137 3-91 (140)
343 cd04914 ACT_AKi-DapG-BS_1 ACT 26.2 1.1E+02 0.0024 22.6 3.8 29 251-279 3-32 (67)
344 COG0779 Uncharacterized protei 26.1 3.1E+02 0.0066 24.3 7.1 68 39-120 16-87 (153)
345 PRK14644 hypothetical protein; 24.9 4.1E+02 0.0089 22.9 7.6 78 39-135 6-86 (136)
346 cd07247 SgaA_N_like N-terminal 24.2 2.4E+02 0.0052 22.1 5.9 50 341-400 62-111 (114)
347 cd04910 ACT_AK-Ectoine_1 ACT d 23.9 3.3E+02 0.0071 20.7 8.1 57 343-414 3-62 (71)
348 cd07247 SgaA_N_like N-terminal 23.9 2.9E+02 0.0062 21.7 6.3 50 18-73 60-109 (114)
349 PRK14644 hypothetical protein; 23.8 4.7E+02 0.01 22.5 9.3 80 267-367 5-86 (136)
350 PF05117 DUF695: Family of unk 22.5 2.4E+02 0.0053 23.8 5.9 32 358-394 68-99 (136)
351 PRK01002 nickel responsive reg 22.4 3.7E+02 0.008 23.3 6.9 62 20-85 57-120 (141)
352 PF00903 Glyoxalase: Glyoxalas 22.3 1.4E+02 0.0031 23.6 4.2 49 345-399 78-126 (128)
353 PTZ00324 glutamate dehydrogena 21.5 3.2E+02 0.0069 31.6 7.8 46 117-162 241-286 (1002)
354 PRK03094 hypothetical protein; 21.0 2.4E+02 0.0053 22.1 4.9 17 123-139 10-26 (80)
355 PF12681 Glyoxalase_2: Glyoxal 20.2 2.5E+02 0.0055 21.6 5.2 39 355-399 67-105 (108)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=8.3e-28 Score=264.44 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=151.4
Q ss_pred CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
.+|.|.+++..+.++|+|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. ++++++|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 46888899999999999999999999999999999999999999999998 5789999999998 8898885 5788999
Q ss_pred HHHHHHHhcCCCe-------------------eeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044730 314 CFHLKEEMLHPLR-------------------VMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEI 374 (419)
Q Consensus 314 ~~~L~~al~~~~~-------------------v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I 374 (419)
++.|..+|..+.. |.+.+..+ ..+|+|||.|.|||||||+|+++|.++|++|++|||
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s----~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI 816 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEK----QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI 816 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCC----CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence 9999999864421 11222222 368999999999999999999999999999999999
Q ss_pred eecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 375 GRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 375 ~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
+| .|++ |+|+|||+|.+|+|++++++ ++|+++|.+.|
T Consensus 817 ~T--~ger--v~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 817 TT--IGEK--AEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred cc--cCce--EEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 99 8899 99999999999999998766 99999999876
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=264.16 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=151.5
Q ss_pred CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
.+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence 46788899999999999999999999999999999999999999999998 5667999999998 8888874 5788999
Q ss_pred HHHHHHHhcCCC--------------------eeeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 044730 314 CFHLKEEMLHPL--------------------RVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE 373 (419)
Q Consensus 314 ~~~L~~al~~~~--------------------~v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~ 373 (419)
+++|.++|..+. +|.+.+..+ ..+|+|||.|.|||||||+|+++|.++|++|++||
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s----~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~Ak 840 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHT----DRRSYMELIALDQPGLLARVGKIFADLGISLHGAR 840 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCC----CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEE
Confidence 999999995542 122222222 36999999999999999999999999999999999
Q ss_pred EeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 374 IGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 374 I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
|+| .|++ |+|+|||++.+|.+++ ++++++|+++|.++|.
T Consensus 841 I~T--~ger--a~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 841 ITT--IGER--VEDLFILATADRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred Eec--cCce--EEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence 999 8899 9999999999999999 7778999999998874
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=3.2e-26 Score=252.68 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=155.6
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+..+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+...+++++++|++.|.++|.+.
T Consensus 696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 56668999999999999999999999999999999999999999999999999998776556789999999999999765
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG 261 (419)
. .. . ...++ .++..++ .+|.|.|+|..+..+|+|+|.|+||||
T Consensus 776 ~-----~~----~-------~~~~~-------------------~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpG 820 (884)
T PRK05007 776 S-----PQ----P-------PKPRR-------------------LPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPG 820 (884)
T ss_pred C-----CC----c-------ccccc-------------------cccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence 1 00 0 00000 0111122 688999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
|||+|+++|.++|++|.+|+|+| .|+++.|+|||+ .+|.++. +++++.|+++|.++|..
T Consensus 821 LL~~I~~~l~~~~l~I~~AkI~T--~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 821 LLARVGKIFADLGISLHGARITT--IGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHHHCCcEEEEEEEec--cCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999996 799999999997 7889988 66889999999988853
No 4
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=4.5e-26 Score=250.78 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=153.2
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.++.+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.++...+++++++|++.|.++|.+.
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN 751 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 56678999999999999999999999999999999999999999999999999998776556789999999999999765
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG 261 (419)
. .. .... .. ++..++ .+|.|.|+|..+..+|+|+|.++||||
T Consensus 752 ~-----~~--------------~~~~-~~----------------~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpG 795 (854)
T PRK01759 752 K-----LK--------------KLNL-EE----------------NHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAG 795 (854)
T ss_pred C-----Cc--------------chhc-cc----------------cccccCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence 1 10 0000 00 011111 678999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al 321 (419)
|||+|+++|.++|++|+.|+|+| .|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus 796 LL~~I~~~l~~~~l~i~~AkI~T--~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 796 LLAQVSQVFSELNLNLLNAKITT--IGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcc--cCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999999999999996 799999999998 88999987644 99999988776
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=246.14 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=155.2
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCC--chhHHHHHHHHHHHHhcccc
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLH--TKQRREETCEHMIAVLGEYS 184 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~--~~~r~~~i~~~L~~vL~~~~ 184 (419)
.+.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|+++++... +++|+++|++.|.++|.+..
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999999999999999999999877642 56899999999999997751
Q ss_pred cchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCccH
Q 044730 185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKGL 262 (419)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpGL 262 (419)
.+ +..+... .++..++ .+|.|.+++..+.++|+|+|+++|||||
T Consensus 782 -----~~--------------~~~~~~~---------------~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGL 827 (895)
T PRK00275 782 -----DY--------------PTIIQRR---------------VPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGL 827 (895)
T ss_pred -----cc--------------chhhhhh---------------hhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCH
Confidence 10 0000000 0011111 5789999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 263 FYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 263 l~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
|++|+++|+.+|+||.+|+|.| .|+++.|+|+|. .+|.++.+++++++|+++|.++|..+
T Consensus 828 La~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 828 LARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999997 389999999998 88999988888999999999999654
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=6e-25 Score=243.06 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=150.3
Q ss_pred ccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHH
Q 044730 236 KASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALC 314 (419)
Q Consensus 236 ~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 314 (419)
.|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 5778888877789999999999999999999999999999999999998 6789999999998 8888888877899999
Q ss_pred HHHHHHhcCCCe-----------------------eeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEE
Q 044730 315 FHLKEEMLHPLR-----------------------VMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFS 371 (419)
Q Consensus 315 ~~L~~al~~~~~-----------------------v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~ 371 (419)
+.|.++|..... |.+.+ .....+|.++|.|.|||||||+|+++|.++|++|++
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~----~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~ 809 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILN----TASRKATIMEVRALDRPGLLARVGRTLEELGLSIQS 809 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEcc----CCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEE
Confidence 999999865321 11111 112468999999999999999999999999999999
Q ss_pred EEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 372 AEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 372 A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
|+|.| .|++ ++|+|||++..|.|+++ +++++|+++|.++|
T Consensus 810 a~i~t--~~~~--~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 810 AKITT--FGEK--AEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EEEEe--cCcc--ceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999 7888 99999999999999997 67799999998876
No 7
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=239.73 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=149.0
Q ss_pred ccEEEEEeCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCC-CHHHH
Q 044730 236 KASITVDNLLS---PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVV-DPKQQ 310 (419)
Q Consensus 236 ~~~V~v~~~~~---~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~-~~~~~ 310 (419)
.|.|.+.+... .+++.|.|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. +++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T-t~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT-SSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-cCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 45566766665 58999999999999999999999999999999999998 5778999999998 8888854 35788
Q ss_pred HHHHHHHHHHhcCCCeee--ee---CC---CC---------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 044730 311 TALCFHLKEEMLHPLRVM--VT---NR---GP---------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE 373 (419)
Q Consensus 311 ~~l~~~L~~al~~~~~v~--~~---~~---~~---------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~ 373 (419)
++|++.|.++|..+.... +. ++ .. ......+|.|+|+|.|||||||+|+++|.++|++|++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 999999999986543100 00 00 00 011236899999999999999999999999999999999
Q ss_pred EeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcC
Q 044730 374 IGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG 418 (419)
Q Consensus 374 I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~ 418 (419)
|.| .|++ ++|+|||++.+|.++++++++++|+++|.++|.+
T Consensus 847 I~T--~g~~--v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 847 IAT--LGER--VEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred EEe--cCCE--EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999 7899 9999999999999999888889999999998853
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.9e-24 Score=237.74 Aligned_cols=181 Identities=22% Similarity=0.261 Sum_probs=150.7
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+..+.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.||+++|+|+|.++.+..++++++++|++.|.++|.+.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 44557899999999999999999999999999999999999999999999999998776567789999999999999875
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG 261 (419)
. .+ +..... +.++..++ .++.|.+++..+.++|+|+|.++||||
T Consensus 753 ~-----~~--------------~~~~~~---------------~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG 798 (856)
T PRK03059 753 A-----PL--------------PEPSKG---------------RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPG 798 (856)
T ss_pred C-----Cc--------------chhhcc---------------cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence 1 10 000000 00111122 578899999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
||++|+++|+.+|+||.+|+|+| .|+++.|+|+|. +.++.+++++++|++.|.++|.
T Consensus 799 LLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 799 LLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 389999999995 3345567789999999988773
No 9
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.9e-24 Score=235.94 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=150.1
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+..+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|+++.+.. .+++.+|++.|.++|.+.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence 344578999999999999999999999999999999999999999999999999987653 467888999999999875
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG 261 (419)
. .+ . .+. + +..++..++ .+|.|.+++..+.++|+|+|.+.||||
T Consensus 763 ~-----~~---~--------~~~----~--------------~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 763 L-----QK---V--------RPA----R--------------RAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred C-----Cc---c--------ccc----c--------------ccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 1 10 0 000 0 000111112 688999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
||++|+++|+++|++|.+|+|+| .|+++.|+|+|+ .+|.++.++++ +.|+++|.++|.
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999999999999997 489999999998 88888776544 999999988874
No 10
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=3.6e-24 Score=236.86 Aligned_cols=183 Identities=21% Similarity=0.307 Sum_probs=152.8
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCC-chhHHHHHHHHHHHHhcc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLH-TKQRREETCEHMIAVLGE 182 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~r~~~i~~~L~~vL~~ 182 (419)
..+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+... +++++++|++.|.++|.+
T Consensus 663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 3447889999999999999999999999999999999999889999999999999876644 567899999999999976
Q ss_pred cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCc
Q 044730 183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQK 260 (419)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~Drp 260 (419)
.. .. ++...+. ++.++..++ .+|.|.|+|..+..+|+|+|.|+|||
T Consensus 743 ~~-----~~--------------~~~~~~~-------------~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~Drp 790 (850)
T TIGR01693 743 LA-----KD--------------PDTISAR-------------RARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRP 790 (850)
T ss_pred CC-----cc--------------ccccccc-------------cCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCcc
Confidence 41 10 0000000 000111222 67899999999999999999999999
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al 321 (419)
|||++|+++|+++|++|.+|+|.| .|+++.|+|+++ ..|.|+.+ ++++.|+++|.++|
T Consensus 791 Gll~~i~~~l~~~~~~i~~a~i~t--~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 791 GLLARVGRTLEELGLSIQSAKITT--FGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEe--cCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999997 689999999998 78999887 68899999998876
No 11
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.93 E-value=1.2e-25 Score=161.83 Aligned_cols=69 Identities=77% Similarity=1.451 Sum_probs=67.0
Q ss_pred eEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCC
Q 044730 21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCP 89 (419)
Q Consensus 21 t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~ 89 (419)
|+|+|+||||.||+||+++++.+|||+|+||++||||+|||.||||+.+....+++|++|++||.++||
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP 69 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP 69 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999999999999999999988888999999999999997
No 12
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.5e-23 Score=233.52 Aligned_cols=186 Identities=25% Similarity=0.359 Sum_probs=156.2
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCC-CchhHHHHHHHHHHHHhcc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELL-HTKQRREETCEHMIAVLGE 182 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~r~~~i~~~L~~vL~~ 182 (419)
.+..+.+.|+|+++||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.+.. .+++++++|++.|..++.+
T Consensus 727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 445578999999999999999999999999999999999999999999999999977654 3788999999999998876
Q ss_pred cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccc-cccc--CccEEEEEeCCCCCeEEEEEEecCC
Q 044730 183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLST-EVTQ--NKASITVDNLLSPAHTLLQIKCADQ 259 (419)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~V~v~~~~~~~~t~v~V~~~Dr 259 (419)
.. .+ +..+... ..++ ..++ .+|.|.|+|..+.++|+|+|.++||
T Consensus 807 ~~-----~~--------------~~~~~~r--------------~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~Dr 853 (931)
T PRK05092 807 EV-----RL--------------PEALAKR--------------TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDR 853 (931)
T ss_pred CC-----CC--------------ccccccc--------------cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCc
Confidence 41 11 0000000 0000 1111 6789999999999999999999999
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 260 pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
||||++|+++|+++|+||.+|+|.| .|+++.|+|++. .+|.++.++++++.|+++|.++|..+
T Consensus 854 pGLl~~I~~~l~~~gl~I~~A~I~T--~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 854 PGLLYDLTRALSDLNLNIASAHIAT--YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred CcHHHHHHHHHHHCCceEEEEEEEE--cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999996 589999999997 88999988888999999999999653
No 13
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.5e-23 Score=228.56 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=142.5
Q ss_pred ccEEEEEe-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 236 KASITVDN-LLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 236 ~~~V~v~~-~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
.+.|.+.. .+..+.+.|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. ++|.+ +++++++
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t-~~~g~~ld~f~V~~~~~~~---~~~~~~i 751 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLD-APHDAIFDVFEVLPQDTYA---DGDPQRL 751 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEE-cCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence 34444433 66779999999999999999999999999999999999998 5778999999998 66664 3467889
Q ss_pred HHHHHHHhcCCCeee-ee----CCC------C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 314 CFHLKEEMLHPLRVM-VT----NRG------P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 314 ~~~L~~al~~~~~v~-~~----~~~------~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
++.|..+|....... .. ++. + ......+|.|+|.|.|||||||+|+.+|+++|++|++|+|+|
T Consensus 752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T 831 (869)
T PRK04374 752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT 831 (869)
T ss_pred HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence 999999986532110 00 000 0 011246899999999999999999999999999999999999
Q ss_pred cccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 377 HSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 377 ~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
.|++ ++|+|||+|.+|.+++++++ ++|+++|.+.|.
T Consensus 832 --~g~~--a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 832 --FGER--AEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred --cCCE--EEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 7899 99999999999999987776 999999999875
No 14
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=3.8e-23 Score=230.25 Aligned_cols=179 Identities=22% Similarity=0.305 Sum_probs=152.4
Q ss_pred CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
.++.|.+.+..+.+++.|+|+++||||||++|+++|+.+|+||.+|+|+| +.++.+.|+|+|. .+|.++.+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 34778888888889999999999999999999999999999999999998 5678999999997 788887778899999
Q ss_pred HHHHHHHhcCCCe--eeee----C--C--C---C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044730 314 CFHLKEEMLHPLR--VMVT----N--R--G---P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEI 374 (419)
Q Consensus 314 ~~~L~~al~~~~~--v~~~----~--~--~---~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I 374 (419)
++.|..++..... ..+. + + . + ......+|.|+|.+.||||||++|+++|.++|++|.+|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 9999988844211 0000 0 0 0 0 0112357999999999999999999999999999999999
Q ss_pred eecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcC
Q 044730 375 GRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG 418 (419)
Q Consensus 375 ~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~ 418 (419)
.| .|++ ++|+|||++.+|.++.+++++++|+++|.+.|.+
T Consensus 877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99 7888 9999999999999999998889999999998864
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=6.7e-23 Score=223.66 Aligned_cols=173 Identities=19% Similarity=0.284 Sum_probs=139.6
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS 186 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~ 186 (419)
.+.+.|+|+|+||||||++|+++|+.+||||++|+|+| .||+++|+|+|+++.+..+ .++++++.|+++|.+.. .
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~ 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence 68899999999999999999999999999999999999 9999999999999776533 35889999999997741 0
Q ss_pred hhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCccHHH
Q 044730 187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKGLFY 264 (419)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~ 264 (419)
. . ..+.+. .+. ..++..++ .++.|.+++..+.++|+|+|.++||||||+
T Consensus 672 ~--~----------------~~~~~~----~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla 722 (774)
T PRK03381 672 V--L----------------ARLAAR----EAA-------AAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLA 722 (774)
T ss_pred h--h----------------hhhhcc----ccc-------ccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHH
Confidence 0 0 000000 000 00011111 578899999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHH
Q 044730 265 DILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHL 317 (419)
Q Consensus 265 ~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L 317 (419)
+|+++|+++|+||.+|+|.| .|+.+.|+|+|. .+|.++.++ ++.|+++|
T Consensus 723 ~Ia~~L~~~~lnI~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 723 RLARALERAGVDVRWARVAT--LGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred HHHHHHHHCCCeEEEEEEee--cCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 99999999999999999997 489999999998 889998764 66776665
No 16
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.2e-23 Score=216.55 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=146.5
Q ss_pred CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
..|.|.+.+....+.|.|+|+++|+|.||+.++.++...|.||.+|+|.| +..|++.|+|+|. ++|.++. +.+...+
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~t-t~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFT-TRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEE-ccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 45778877888889999999999999999999999999999999999999 6778999999998 8998877 6788888
Q ss_pred HHHHHHHhcCCCee--------------eeeCCC--CCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 044730 314 CFHLKEEMLHPLRV--------------MVTNRG--PDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRH 377 (419)
Q Consensus 314 ~~~L~~al~~~~~v--------------~~~~~~--~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~ 377 (419)
+..|.+++..+.-. .+.++. .++.....|.|||.+.||||||++|+++|.+++++|++|+|+|
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT- 826 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT- 826 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence 88888887543111 000100 1122345899999999999999999999999999999999999
Q ss_pred ccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 378 STSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 378 ~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
+||+ |+|+|||++..|.+++ ++.++.+.+++..+++
T Consensus 827 -~GEr--veD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 827 -FGER--VEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred -cccc--ceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 9999 9999999999999996 5555777777776664
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-23 Score=216.20 Aligned_cols=181 Identities=22% Similarity=0.302 Sum_probs=152.2
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+..+.+.|.|+++|+|.||+.+++.+...|+||++|+|+|+.||+++|+|+|+++++...++.|...++..|.+++...
T Consensus 679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~ 758 (867)
T COG2844 679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSG 758 (867)
T ss_pred cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcC
Confidence 34447899999999999999999999999999999999999999999999999999988888999999999888877654
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG 261 (419)
. . .|+. .++.+++.++ .+|.|.|.+..+..+|+++|.+.||||
T Consensus 759 ~------~-------------~~~~----------------~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG 803 (867)
T COG2844 759 K------A-------------QPPR----------------RRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPG 803 (867)
T ss_pred C------C-------------CCcc----------------ccccCcccceeccCCceeeccccCCCceEEEEEeCCccc
Confidence 1 0 0100 0111233333 689999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
||++++++|++++++|++|+|+| .|+++.|+|+++ ..|.++.. +.++.+.+.|.+++.
T Consensus 804 LLa~v~~v~~dl~l~i~~AkItT--~GErveD~F~vt~~~~~~l~~-~~~q~l~~~ll~al~ 862 (867)
T COG2844 804 LLAALAGVFADLGLSLHSAKITT--FGERVEDVFIVTDADGQALNA-ELRQSLLQRLLEALL 862 (867)
T ss_pred HHHHHHHHHHhcccceeeeeecc--ccccceeEEEEeccccccCCH-HHHHHHHHHHHHHhc
Confidence 99999999999999999999996 899999999998 88998854 466677777766663
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=2.7e-22 Score=220.76 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=142.5
Q ss_pred ccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHH
Q 044730 236 KASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALC 314 (419)
Q Consensus 236 ~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 314 (419)
.+.|.+.+.+..+.+.|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. ++|. ...++++++|+
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t-~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHT-TRHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEE-cCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 4566688888889999999999999999999999999999999999998 5678899999998 6665 44567899999
Q ss_pred HHHHHHhcCCCeee--ee---CCC------C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 044730 315 FHLKEEMLHPLRVM--VT---NRG------P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRH 377 (419)
Q Consensus 315 ~~L~~al~~~~~v~--~~---~~~------~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~ 377 (419)
+.|..+|....... .. ++. + +.....+|.|+|.+.|||||||+||.+|.++|++|++|+|.|
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T- 821 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT- 821 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence 99999986532100 00 000 0 011236899999999999999999999999999999999999
Q ss_pred ccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 378 STSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 378 ~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
.|++ ++|+|||+ +.++.+++++++|++.|.++|.
T Consensus 822 -~~~~--v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 -LGER--VEDTFLID---GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred -cCCE--EEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence 7899 99999995 3446678888999999998874
No 19
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=2.9e-22 Score=218.62 Aligned_cols=165 Identities=17% Similarity=0.183 Sum_probs=134.7
Q ss_pred CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730 235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL 313 (419)
Q Consensus 235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 313 (419)
.++.|.+.+.. .+.+.|+|+|+||||||++|+++|+.+|+||.+|+|.| .++.+.|+|+|. ++|.+. .++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l 658 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALL 658 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHH
Confidence 35778888877 89999999999999999999999999999999999997 568899999998 777653 25778
Q ss_pred HHHHHHHhcCCCee--ee--eC-----CC---C---------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEE
Q 044730 314 CFHLKEEMLHPLRV--MV--TN-----RG---P---------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSA 372 (419)
Q Consensus 314 ~~~L~~al~~~~~v--~~--~~-----~~---~---------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A 372 (419)
++.|++++..+..+ .. .. +. . ......+|.|+|.|.|||||||+||.+|.++|+||++|
T Consensus 659 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~A 738 (774)
T PRK03381 659 RQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWA 738 (774)
T ss_pred HHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEE
Confidence 88888887654211 00 00 00 0 01112579999999999999999999999999999999
Q ss_pred EEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHH
Q 044730 373 EIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKV 412 (419)
Q Consensus 373 ~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l 412 (419)
+|.| .|++ ++|+|||+|.+|.+++++ +++|+++|
T Consensus 739 kI~T--~g~~--a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 739 RVAT--LGAD--VVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred EEee--cCCe--EEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 9999 7899 999999999999999975 46666655
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.5e-20 Score=145.15 Aligned_cols=73 Identities=16% Similarity=0.346 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
+|+|||.++|||||||+|+++|.++|++|++|+|+| .|++ ++|+|||++.+|.|+++++++++|+++|.++|.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~ger--a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDD--AHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCce--EEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999 8899 999999999999999999999999999998874
No 21
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.6e-20 Score=143.88 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK 413 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~ 413 (419)
+|+|||.+.|||||||+|+++|+++|++|++|+|+| .|++ ++|+|||+|.+|+|+++++++++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Ger--v~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGW--FMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCe--EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999 8899 99999999999999999988888888775
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2.3e-19 Score=138.52 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=67.9
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe--ecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIG--RHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM 417 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~--T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~ 417 (419)
|++||.+.|||||||+|+++|+++|++|++|+|+ | .|++ ++|+||| +.+|.++++++++++|+++|+++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T--~Ger--v~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV--KGYR--EVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc--ccCE--EEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999 9 8899 9999999 8899999999999999999999874
No 23
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=6.8e-18 Score=130.37 Aligned_cols=73 Identities=15% Similarity=0.348 Sum_probs=69.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
||+|+|.|+|||||||+|+++|+++|++|++|+|.| .|+++.|+||+. .+|.|+.++++++.|+++|.++|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999996 799999999997 8999999999999999999999976
No 24
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2.4e-16 Score=120.87 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=62.3
Q ss_pred CeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhC
Q 044730 20 PSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVC 88 (419)
Q Consensus 20 ~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~ 88 (419)
+|+|.|.++||+|||.+++++|.++||+|.+|+|+|.|.|++|+|+|+|.+|+|+.+.+.+....++++
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 599999999999999999999999999999999999999999999999999998777776655545544
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=4.5e-16 Score=120.23 Aligned_cols=75 Identities=73% Similarity=1.183 Sum_probs=68.9
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
|+++|.|+|||||||+|+++|+++|++|++|+|.+.|.|+++.|+|+++.+|.++.++++++.|+++|.+++.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999933489999999999878888999889999999999999765
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=9.1e-16 Score=119.85 Aligned_cols=73 Identities=74% Similarity=1.061 Sum_probs=67.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.++|+++||||||++++++|+++|+||++|+|+|+.+|+++|+|+|+++.+..+++++++++++.|.++|++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence 6899999999999999999999999999999999899999999999998666567889999999999998764
No 27
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=1.5e-15 Score=118.10 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESL-EFPLASSQARNRIVEKVKKTLMG 418 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~-g~~l~~~~~~~~i~~~l~~~l~~ 418 (419)
|+|||.++||||||++||++|+++|+||++|+|.| .|++ +.|+|||+|.+ |.++.++++.+++++.|.+.|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~--~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGR--LACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCE--EEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999 7899 99999999998 99998888889999999999876
No 28
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=1.7e-16 Score=119.36 Aligned_cols=77 Identities=70% Similarity=1.185 Sum_probs=73.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~~ 419 (419)
++||++|+.||.++||||.+|+.+|++|++|+|..|..++++|.++.|++.+..+. ++.+..+++|.+++++.||||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999988666 888888999999999999999
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=3.7e-15 Score=115.50 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=64.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCC-CchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELL-HTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~r~~~i~~~L~~vL 180 (419)
+.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+.. .++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999998899999999999876654 47889999999998764
No 30
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.61 E-value=2.4e-14 Score=130.71 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=96.3
Q ss_pred CCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730 105 SKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS 184 (419)
Q Consensus 105 ~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~ 184 (419)
+...++.|+++|+||||+.++|+++|+++||||.+++... .+|.+.-++.|.. ++..+++++..|...-...+
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~-lgg~Fa~i~lvs~------~~~~~~~le~~L~~l~~~~~ 76 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM-LGEEFTFIMLLSG------SWNAITLIESTLPLKGAELD 76 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh-hCCceEEEEEEeC------ChhHHHHHHHHHHhhhhhcC
Confidence 3457899999999999999999999999999999999988 6788877888743 24567888888776222211
Q ss_pred cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHH
Q 044730 185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFY 264 (419)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~ 264 (419)
+.. .+.+. ... . .......+.|+|.+.|||||++
T Consensus 77 ----L~i------------~v~~~--------------------~~~---~-------~~~~~~~~~v~v~G~DrPGIV~ 110 (190)
T PRK11589 77 ----LLI------------VMKRT--------------------TAR---P-------RPAMPATVWVQVEVADSPHLIE 110 (190)
T ss_pred ----eEE------------EEEec--------------------ccc---c-------cccCCceEEEEEEECCCCCHHH
Confidence 110 00000 000 0 0011124689999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEEeecCc--eeEeEEEE
Q 044730 265 DILRTSKDLNIQIAYGRISSSVKGY--RNMDLFIR 297 (419)
Q Consensus 265 ~i~~~L~~~~~~I~~A~I~t~t~g~--~~~d~F~v 297 (419)
+++++|+++|+||.+ +.|.+.+. ...+.|.+
T Consensus 111 ~vT~~la~~~iNI~~--L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 111 RFTALFDSHHMNIAE--LVSRTQPAEGERPAQLHI 143 (190)
T ss_pred HHHHHHHHcCCChhh--eEEeeecCCCCCcccEEE
Confidence 999999999999998 54444442 34445544
No 31
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=9.3e-15 Score=113.56 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=64.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCC-CC-CCchhHHHHHHHHHHHHhcc
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGL-EL-LHTKQRREETCEHMIAVLGE 182 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~-~~-~~~~~r~~~i~~~L~~vL~~ 182 (419)
|.|+++++||||||++|+++|+++||||++|+++|. +|+++|+|+|++++ +. ..++++++++++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999985 99999999999875 44 35789999999999988753
No 32
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.58 E-value=3.2e-14 Score=129.90 Aligned_cols=136 Identities=12% Similarity=0.058 Sum_probs=100.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-CC
Q 044730 247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH-PL 325 (419)
Q Consensus 247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~-~~ 325 (419)
..+.+|++.|+|||||+++++++|+++|+||.+.+... .|+.+.-++.+. +. +.....|+..|...-+. .+
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~--lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM--LGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh--hCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCe
Confidence 46789999999999999999999999999999988885 567666555553 22 23456777777654422 44
Q ss_pred eeeeeCCCC--CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 326 RVMVTNRGP--DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 326 ~v~~~~~~~--~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
++.+..-.. ....+..+.++|.|.||||++++||++|+++|+||.+.+..| .+...+..+.|...
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~--~~a~~~~~~lf~~~ 144 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT--QPAEGERPAQLHIQ 144 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee--ecCCCCCcccEEEE
Confidence 554422111 111223579999999999999999999999999999999999 55533466667654
No 33
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.5e-14 Score=112.03 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=65.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeeccc-CCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHST-SHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~-Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
+.|+|+++||||||++|+++|..+|++|.+|+|.| . +++ +.|+|||++.+|.++.++++.+++++.|++.|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T--~~~~~--v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT--TRDGY--ALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE--eCCCe--EEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 57999999999999999999999999999999998 5 477 99999999999999988888899999988764
No 34
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=5.6e-14 Score=109.72 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=62.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+||.++||||||++|+++|+++|++|.+|+|.|- .|++ +.|+|||.|.+|. ..+++++++++++|+++|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~--v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGR--VLDLFFITDAREL-LHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCE--EEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999951 4577 9999999999877 566778888999998876
No 35
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.45 E-value=7.3e-13 Score=100.35 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=55.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
+.|.|+++||||||++++++|+.+|+||++|+++|+.+|+++|+|+|.+.++.. -+.+++.|..+|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999999975541 334555555443
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3.1e-11 Score=93.23 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=57.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI 177 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~ 177 (419)
+.|+|+++||||+|++|+++|+++|+||++|+++|. +++++|+|+|+++++...++++++++++.|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999984 7799999999997665446677777776653
No 37
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.28 E-value=5.2e-11 Score=104.48 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=107.5
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS 186 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~ 186 (419)
..++.|+++|+||||+...+++...++||||+++|+.+ .++.+.-++.+.- +|+-.++++..|.. +..+.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisg------s~dav~~le~~l~~-l~~~~-- 72 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISG------SWDAVTLLEATLPL-LGAEL-- 72 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEee------CHHHHHHHHHHhhc-ccccC--
Confidence 44689999999999999999999999999999999998 6777766777764 47778888888876 44321
Q ss_pred hhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHH
Q 044730 187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDI 266 (419)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i 266 (419)
++.+ .|. +. .+++. ......+.+.|.+.||||++.++
T Consensus 73 -~L~v--------------------~m~-----------rt--------~~~~~---~a~~~~v~v~v~a~DrpgIv~~~ 109 (176)
T COG2716 73 -DLLV--------------------VMK-----------RT--------GAHPT---PANPAPVWVYVDANDRPGIVEEF 109 (176)
T ss_pred -CeEE--------------------EEe-----------ec--------CCCcc---CCCCceEEEEEEecCCccHHHHH
Confidence 0110 010 00 00000 22345568999999999999999
Q ss_pred HHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHH
Q 044730 267 LRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 267 ~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~ 319 (419)
+..|..+|+||.+-.-.+....+.....|..+ .-+-|..- ....|++++++
T Consensus 110 T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~a 161 (176)
T COG2716 110 TALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEA 161 (176)
T ss_pred HHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHH
Confidence 99999999999874333322334456668765 32333322 24455555554
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=3.7e-11 Score=92.78 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=59.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK 413 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~ 413 (419)
+.++|.++||||+|++|+.+|+++|+||.+|.+.| .++. +.|+|+|.+.+|.++ ++++.+++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~--~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDM--AVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCe--EEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 57999999999999999999999999999999998 5566 999999999999988 6677777777664
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.25 E-value=8.1e-11 Score=126.47 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=112.4
Q ss_pred EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCCCee
Q 044730 250 TLLQIKC-ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHPLRV 327 (419)
Q Consensus 250 t~v~V~~-~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~~~v 327 (419)
-.++|.. +|++|+|.+++++|+.++++|.+|++.+ ++.....|.|. ..|.+.. + ..+++.+..++...+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQDFD-P---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCCCCC-h---HHHHHHHHHhhcCCCCc
Confidence 4678888 9999999999999999999999999996 45567789998 5566533 3 56677777777655333
Q ss_pred eeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHH
Q 044730 328 MVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNR 407 (419)
Q Consensus 328 ~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~ 407 (419)
. ..+++......+++||++.||||+|+.|+++|. .|.+|+++| .|.. ++|.||+. .| -.+.+
T Consensus 620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~--~~------~~r~~ 681 (693)
T PRK00227 620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALK--PG------FDRAT 681 (693)
T ss_pred c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEec--Cc------ccHHH
Confidence 2 123332334568999999999999999999998 899999999 9999 99999998 11 12577
Q ss_pred HHHHHHHHHcC
Q 044730 408 IVEKVKKTLMG 418 (419)
Q Consensus 408 i~~~l~~~l~~ 418 (419)
++..|.++|-|
T Consensus 682 ~~~~~~~~~~~ 692 (693)
T PRK00227 682 VERDVTRVLAG 692 (693)
T ss_pred HHHHHHHHHhc
Confidence 88888877643
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=6.5e-11 Score=90.37 Aligned_cols=70 Identities=33% Similarity=0.467 Sum_probs=62.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
|.|+|.++||||+|++|+++|+++++||.++++.|. +++++|+|++++..+...+.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999984 5699999999997665556789999999988753
No 41
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.24 E-value=6e-11 Score=104.09 Aligned_cols=155 Identities=15% Similarity=0.059 Sum_probs=107.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CCC
Q 044730 247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HPL 325 (419)
Q Consensus 247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~~ 325 (419)
..|.+|+++++||||+...+++...++|+||.++|+.. .|+.+. |++...|. .+...+|++.|...=. .++
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a--~i~lisgs----~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFA--GIMLISGS----WDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhccee--EEEEEeeC----HHHHHHHHHHhhcccccCCe
Confidence 35789999999999999999999999999999999986 566555 44444443 2345566655543222 234
Q ss_pred eeeeeCCCCC--CCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730 326 RVMVTNRGPD--TELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ 403 (419)
Q Consensus 326 ~v~~~~~~~~--~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~ 403 (419)
.+.+..-.+. ......+.++|.+.||||++.++|++|.++|++|.+....|+. ....-.--|...-.-+-|.+-
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~--a~~s~~~lfha~it~~lPa~~-- 150 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYP--APGSSAPLFHAQITARLPANL-- 150 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeee--cCCCCccceehhhhccCCCcC--
Confidence 4443322221 1223577899999999999999999999999999999999955 444456678776555555552
Q ss_pred HHHHHHHHHH
Q 044730 404 ARNRIVEKVK 413 (419)
Q Consensus 404 ~~~~i~~~l~ 413 (419)
....+++++.
T Consensus 151 ~i~~l~~~f~ 160 (176)
T COG2716 151 SISALRDAFE 160 (176)
T ss_pred cHHHHHHHHH
Confidence 1244554443
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=2.1e-10 Score=87.57 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=62.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
|.++|.+.||||+|++|+++|.++|++|.++++.+ .++. +.|.|++.+.+|.+ .++++.++|+++|.++|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~--~~~~--~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGER--AEDVFYVTDADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe--cCCE--EEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 57999999999999999999999999999999999 5566 99999999999999 45677788888887653
No 43
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=1.7e-10 Score=87.42 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=54.3
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al 321 (419)
..|.|+++||||||++++++|+.+|+||.+|+|.| +..+.+.|+|+|. .+|.- .+.|.++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence 47899999999999999999999999999999998 5678899999998 55532 245666666654
No 44
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.12 E-value=1e-09 Score=118.11 Aligned_cols=145 Identities=9% Similarity=0.035 Sum_probs=114.2
Q ss_pred eeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730 109 LYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC 187 (419)
Q Consensus 109 ~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~ 187 (419)
...++|.. +|++|+|++++++|+.++++|.+|++.+ +|..+..|.|....+..|++.+ +++.++..+.++.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~--- 617 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDPQE---FLQAYKSGVYSEL--- 617 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCChHH---HHHHHHHhhcCCC---
Confidence 35778887 9999999999999999999999999988 7888999999998888788766 7778887776541
Q ss_pred hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHH
Q 044730 188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDIL 267 (419)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~ 267 (419)
.+ . . ..+|.+.+.. ++++|.+.||||+|+.++
T Consensus 618 --~~--------------~-----------------------~---~~~~~~~~~~------~~~e~r~~dr~g~l~~~~ 649 (693)
T PRK00227 618 --PD--------------P-----------------------A---PGITATFWHG------NILEVRTEDRRGALGALL 649 (693)
T ss_pred --Cc--------------c-----------------------c---CCCCceEeeC------cEEEEEeCccccHHHHHH
Confidence 10 0 0 0234555543 599999999999999999
Q ss_pred HHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 268 RTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 268 ~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
++|. .|..|++.| .|..+.|.|++..+ ..+.++++.+.+++.
T Consensus 650 ~~l~----~~~~~~~~~--~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 650 GVLP----DLLWITAST--PGATMIVQAALKPG-------FDRATVERDVTRVLA 691 (693)
T ss_pred HHhh----hhhhHhhcC--CCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence 9999 788899995 78999999999721 124566666666653
No 45
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.96 E-value=7.5e-09 Score=78.51 Aligned_cols=68 Identities=31% Similarity=0.465 Sum_probs=59.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v 179 (419)
.|.|.++|+||+|++++++|+++|+||.++.+.+..+ +..+.|++..+.+...++++++++++.|.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999999544 9999999998765545568899999988764
No 46
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.89 E-value=2e-08 Score=76.16 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=60.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
+.|.+.+.|+||+|++|+.+|+++|++|.++.+.+ .++. ..++|++.+.++.+ .++++.++++.+|+..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~--~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGER--ALDVFYVTDSDGRP-LDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCE--EEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 36889999999999999999999999999999999 5455 99999999988887 44567788888887653
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.83 E-value=3.1e-08 Score=77.22 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG 181 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~ 181 (419)
++.|++.|+||||++++++++|+++||||.+.+..+ .+|++.-++.|.-+ ++..+++++.|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999 67888888888763 5678889999888443
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.57 E-value=3.9e-07 Score=71.20 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
++.|++.|+||||+.++|+++|+++||||.+++.++ .+|++.-.+.+..+ +...+.+++.|..
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~ 63 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPG 63 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHH
Confidence 368999999999999999999999999999999999 67777655555532 1236778877777
No 49
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.52 E-value=1.3e-06 Score=65.14 Aligned_cols=62 Identities=24% Similarity=0.444 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCC-eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDG-RVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
|.|.+.++||||+|++++++|+++|+||..+.+.+..++ ....++...+ ....+++.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence 578999999999999999999999999999999996663 4444444433 5556677777766
No 50
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.40 E-value=3.2e-06 Score=65.83 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=50.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al 321 (419)
+.+|++.|+||||+++.++++|+++|+||.+.+..+ .++.+.-.+.+... ++..++|+++|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~--~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV--LGGRFTLIMLVSIP------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE--ETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE--EcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence 568999999999999999999999999999999986 56777766666522 346778888887654
No 51
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.39 E-value=1.2e-06 Score=65.43 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=52.4
Q ss_pred eEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCC--eEEEEEEEEcCCCCCCCCHHHHHHHHHhh
Q 044730 21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGR--WCYIVLWVVPDASSDKVDWESLKNRLLSV 87 (419)
Q Consensus 21 t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~--w~~dvf~v~~~~g~~~~~~~~~~~~~~~~ 87 (419)
|.|+|.|+||+|+|.++.++|.+.|++|..+++++++. |.+.++++.+.... +.+.+.|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDL-----EKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGH-----HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCH-----HHHHHHHHcc
Confidence 67999999999999999999999999999999999665 99999988877543 5555666554
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=2.1e-06 Score=66.64 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=51.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
+|++.|+||||+.++++++|+++||||.+.+..+ .++++...+.+.-+.+ ...+.+++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDS-----ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCC-----CCHHHHHHHHHHHH
Confidence 3789999999999999999999999999998777 4677766777765322 24677888887743
No 53
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=4e-06 Score=65.01 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=45.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al 321 (419)
+|+|.|+||||++++++++|+++|+||.+.+..+ .++.+.-.|.+. +.+. ..+.|++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~--~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV--IHGRLSLGILVQIPDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE--EcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence 3789999999999999999999999999976554 445555555665 4332 2355666666544
No 54
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=8.2e-06 Score=65.27 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
..|++.|+||||++++|+++|+++||||.+.+..+ .++.+.-.+.+.-+. . ....+.+++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998 567766666666431 0 123677888877733
No 55
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=2.3e-05 Score=60.48 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=45.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCC-eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDG-RVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.|++.|+||||++++|+++|+++||||.+.+.++.+++ ...-.+.+.-+.. .-..+.+++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF----DLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence 37899999999999999999999999999999974333 3222233322111 1136778877777
No 56
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=1.3e-05 Score=58.66 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=56.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v 179 (419)
++|+|.|||+.||=.++++++.+.|++|..+.+.| .+....-+|+|...... -+-||+.++++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence 47899999999999999999999999999999998 55567778999875433 356899999998763
No 57
>PRK00194 hypothetical protein; Validated
Probab=98.07 E-value=1.2e-05 Score=64.45 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.|++.|+||||++++++++|+++||||.+.+..+ .++.+.-.+.+.-+. . +...+.+++.|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISE-S---KKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecC-C---CCCHHHHHHHHHH
Confidence 679999999999999999999999999999999888 567666555554321 1 1224667777766
No 58
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.03 E-value=4.4e-05 Score=59.69 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=47.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-----CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-----GRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-----g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
|++.|+|+||++++|++.|+++||||.+.+..+.+. +++.-.+.+.-+. ....+++++.|+.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEE 68 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHH
Confidence 789999999999999999999999999999998542 4444445554432 1136678887777
No 59
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.03 E-value=2.1e-05 Score=61.37 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=45.0
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 044730 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEE 320 (419)
Q Consensus 250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~a 320 (419)
.++++.|+||||++++|++.|+++|+||.+++... .++.+.-...+. ... ...+.|++.|...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~--~~~----~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVE--GSW----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEE--ecc----ccHHHHHHHHHHH
Confidence 57999999999999999999999999999988886 345443222223 221 1245666666653
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=8.1e-05 Score=57.38 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=32.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+|.+.|+||||++++||++|+++|+||...+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 3789999999999999999999999999998887
No 61
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.78 E-value=0.00018 Score=56.29 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.- .+.+.++.+.+.|++
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHHHC
Confidence 5799999999999999999999999999999999964 677766666553 234455555554443
No 62
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=5.7e-05 Score=60.38 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=44.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al 321 (419)
.+|++.|+||||++++++++|+++|+||.+.+-.+ .++.+.-.+.+...+.. ...+.|++.|+...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~----~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESN----LDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCC----CCHHHHHHHHHHHH
Confidence 47899999999999999999999999999976664 34443333333311101 12355666665533
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.74 E-value=0.00016 Score=56.48 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=31.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
+|+|.|+||||++++|+++|+++|+||.+.+..+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~ 34 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTET 34 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeee
Confidence 3789999999999999999999999999988776
No 64
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.73 E-value=0.00015 Score=56.62 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=48.0
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.|+|.+.||||+|++|+.++.+.|++|.++++.+...+.. +.-.|.+. +.+.+++.++.+.|++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~--~~~~l~v~------V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGT--ARITLTVE------VKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTE--EEEEEEEE------ESSHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCE--EEEEEEEE------ECCHHHHHHHHHHHHC
Confidence 568999999999999999999999999999999998211233 55555554 3456677777777653
No 65
>PRK00194 hypothetical protein; Validated
Probab=97.72 E-value=9.1e-05 Score=59.34 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=32.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
+++++|.|+||||++++++++|+++|+||.+.+-.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~ 38 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI 38 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence 568999999999999999999999999999955443
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.66 E-value=0.0013 Score=64.24 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=47.1
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEE--ecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM--TTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~--T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.++.|++.|+||||+.+.|+++|+++|+||++...+ +..+.++ -.+.+.+... ..-..+.+++.|..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~---~~~~~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSA---EAASVDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCC---CCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999997 3233333 2333332111 11125667777776
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.65 E-value=0.0014 Score=64.00 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=50.8
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
..++.|++.|+||||+.++|+++|+++||||.+.+.++. ..|.+.-.+.+.-. +.+..++.+++.|..
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~----~~~~~~~~L~~~L~~ 72 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD----GLIFNLETLRADFAA 72 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999872 23444334444321 122337788888887
No 68
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00053 Score=52.46 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
|.+.+.||||+|++|+.++++.|.||.+....+..++.+.-.|.+.- .+.+.++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-----~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-----PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-----CCHHHHHHHHHHHhc
Confidence 67899999999999999999999999998887755566554555543 245566667666665
No 69
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.61 E-value=0.0096 Score=49.56 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=72.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccchhhh
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQ 190 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~~~~ 190 (419)
.|.++..++||=|..++.+|.+.|+||..-.|.-+ +..-+--+.|.. |+. -.+. |...
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~d~---A~~~----Lee~------- 62 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------PDE---AHSV----LEEA------- 62 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------hHH---HHHH----HHHC-------
Confidence 58889999999999999999999999997666542 222222223322 111 1111 2211
Q ss_pred ccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHH
Q 044730 191 LAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTS 270 (419)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L 270 (419)
...|.+.+ ++-|...|+||=|..|+.+|
T Consensus 63 ---------------------------------------------gF~Vr~~d-------VlaVEmeD~PG~l~~I~~vl 90 (142)
T COG4747 63 ---------------------------------------------GFTVRETD-------VLAVEMEDVPGGLSRIAEVL 90 (142)
T ss_pred ---------------------------------------------CcEEEeee-------EEEEEecCCCCcHHHHHHHH
Confidence 01122222 78888999999999999999
Q ss_pred HhCCceEEEEEEEEeecCceeE
Q 044730 271 KDLNIQIAYGRISSSVKGYRNM 292 (419)
Q Consensus 271 ~~~~~~I~~A~I~t~t~g~~~~ 292 (419)
.++++|+.+...++. ..+.+.
T Consensus 91 ~d~diNldYiYAFv~-ek~KAl 111 (142)
T COG4747 91 GDADINLDYIYAFVT-EKQKAL 111 (142)
T ss_pred hhcCcCceeeeeeee-cCceEE
Confidence 999999999888873 435554
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.58 E-value=0.0034 Score=61.33 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=49.4
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
..+.|++.|+||||+.++|+++|+++|+||.+.+.++.. ++.+.-.+.+..+.+ .-.+.+++.|..
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~ 72 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAP 72 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHH
Confidence 367899999999999999999999999999999998533 344444444443222 126778887777
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.57 E-value=0.0032 Score=61.36 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=48.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.|++.|+||||+.+.|+++|+++||||++.+.+... +|++.-.+.+.-+... .-.+.+++.|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence 689999999999999999999999999999999842 3666555555533211 125667777766
No 72
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00015 Score=55.17 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=54.0
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCC-CCCCCHHHHHHHHHHHHHHh
Q 044730 252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDG-KKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g-~~i~~~~~~~~l~~~L~~al 321 (419)
|++.++.||-.|||++-+|+.+++.|++|.|.....++..+++|.+. .++ ..+........+..++...+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998766677888888765 443 34444444566666655543
No 73
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.44 E-value=0.00017 Score=57.18 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG 181 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~ 181 (419)
...|+|.|+||||+.+.++++|+++|.||++-...- -+|++--.+.|.-+. .....+.+++.|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISK----EVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence 468999999999999999999999999999977655 577766566665421 12235667776666443
No 74
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.33 E-value=0.012 Score=48.95 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=82.8
Q ss_pred EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCC
Q 044730 23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSS 102 (419)
Q Consensus 23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (419)
|.|.--||+|=|.-+...|.+-|.+|+--.|---|. |=..--|+|. ++.-.+-|+... |. |
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d-FGIiRmvV~~-------~d~A~~~Lee~g------F~-----V 66 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD-FGIIRMVVDR-------PDEAHSVLEEAG------FT-----V 66 (142)
T ss_pred EEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC-cceEEEEcCC-------hHHHHHHHHHCC------cE-----E
Confidence 567788999999999999999999999877765443 3333334333 334444444433 11 0
Q ss_pred CCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730 103 NSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158 (419)
Q Consensus 103 ~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~ 158 (419)
...-.+.+...|+||=++.|+++|.+.++|+-.+..+++.+.+++-+|.+.|
T Consensus 67 ----r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 67 ----RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred ----EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 1133677778999999999999999999999999999988888876676654
No 75
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.33 E-value=0.01 Score=57.95 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=31.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRIS 283 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~ 283 (419)
..+|+|.|+||||++++++++|+++|+||.+.+-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 46799999999999999999999999999995554
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.33 E-value=0.0004 Score=55.11 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=44.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
..+|+|.++||||+.+.++++|+++|+||.+ |+..-..+.+.-.+.+. -.+ +......++..|.++.+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~--~~~--~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVD--ISK--EVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEc--CCh--HhccHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999 65411122222222332 111 12234667777766653
No 77
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0013 Score=62.21 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=49.3
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+..+.+++.|+|+||+.+.|++.|+++||||.++.-++-. .|++.--........ +...+.+++.|..
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~ 73 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAP 73 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHH
Confidence 4678999999999999999999999999999999999643 355432222222111 2346667777766
No 78
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.29 E-value=0.013 Score=57.40 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
.+++|+|.|+|||||+++|+++|+++|+||.+.+..+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~ 41 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFV 41 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEE
Confidence 4678999999999999999999999999999977765
No 79
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.0031 Score=48.15 Aligned_cols=61 Identities=5% Similarity=0.055 Sum_probs=43.6
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730 252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK 318 (419)
Q Consensus 252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 318 (419)
+.|.+.||||+|++|+.++++.|.||.+....+ ...+...-.|.+. +.+.+.++.+.++|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ve-----v~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVE-QGRDYTVRDITVD-----APSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEE-ecCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence 678999999999999999999999999876654 2334444445554 223445666666654
No 80
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.25 E-value=0.0091 Score=58.18 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=61.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC--CCeee
Q 044730 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH--PLRVM 328 (419)
Q Consensus 251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~--~~~v~ 328 (419)
+|+|.|+||||+++.|+++|+++|+||.+.+-+....++.+.-.+.+...+..+ ..+.|++.|.+++.. .+.+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~ 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence 689999999999999999999999999997666421223333223333222122 245566666652322 22232
Q ss_pred eeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCce
Q 044730 329 VTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGIC 368 (419)
Q Consensus 329 ~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~ 368 (419)
+..... ...+=|.+..+.-=|.+|-.....-.++
T Consensus 78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~l~ 111 (280)
T TIGR00655 78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGELD 111 (280)
T ss_pred EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCCCC
Confidence 222211 1234444555555566666666555544
No 81
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.22 E-value=0.003 Score=49.34 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=47.3
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
+.+.+..+|+||.|++|...|+++|+||.+..... .+... ...+|||.-. |. .. .+..+++.+.|+.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p--~~~~~-~~~~f~vd~~-~~-~~-~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRP--SKGGL-WEYVFFIDFE-GH-IE-DPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEE--cCCCC-ceEEEEEEEE-CC-CC-CHHHHHHHHHHHH
Confidence 45777889999999999999999999999998666 33332 5588888533 43 23 2333455555554
No 82
>PRK07431 aspartate kinase; Provisional
Probab=97.22 E-value=0.45 Score=51.33 Aligned_cols=296 Identities=16% Similarity=0.158 Sum_probs=157.0
Q ss_pred EEEE-eCCCCCchhHHHHHHHHhcCeEEEEEEeee-CCCeEEE-EEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccC
Q 044730 22 VVTV-NCPDKNGLGCDLCRIILEFGLFIVRGDFST-DGRWCYI-VLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFN 98 (419)
Q Consensus 22 ~v~v-~~~dk~Gll~d~~~~l~d~~l~I~k~~ist-dg~w~~d-vf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (419)
.|++ .-++++|.+..+-..|.+.|.+|---.-|+ .++ ..+ -|-|.+.+- +.....++++.+....
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~-~~~isf~i~~~d~------~~~~~~l~~l~~~~~~----- 339 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGN-SNDIAFTVAENEL------KKAEAVAEAIAPALGG----- 339 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCC-CccEEEEEeHHHH------HHHHHHHHHHHHHcCC-----
Confidence 3444 347889999999999999999987665432 222 122 233322211 1112222222211000
Q ss_pred CCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHH
Q 044730 99 QPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEH 175 (419)
Q Consensus 99 ~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~ 175 (419)
..+ ....+...|.++|. +.+|+++++..+|++.++||..-. + . +..+ .|.|. ++..++.-+.
T Consensus 340 -~~i-~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~I-s~vv~--------~~d~~~av~~ 404 (587)
T PRK07431 340 -AEV-LVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVKV-SCVID--------AEDGDKALRA 404 (587)
T ss_pred -CcE-EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCEE-EEEEc--------HHHHHHHHHH
Confidence 000 12245678999985 899999999999999999997543 3 2 3222 23332 2234444455
Q ss_pred HHHHhcccccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEE
Q 044730 176 MIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIK 255 (419)
Q Consensus 176 L~~vL~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~ 255 (419)
|.+.+.-+. . . ..+.+... + .. .++.--+. ...+...|++.
T Consensus 405 Lh~~f~~~~-----~--~---------~~~~~~~~-------------------~-~~-~~~v~gIa--~~~~~~~i~l~ 445 (587)
T PRK07431 405 VCEAFELED-----S--Q---------IEINPTAS-------------------G-QD-EPEVRGVA--LDRNQAQLAIR 445 (587)
T ss_pred HHHHhccCC-----c--c---------cccCcccc-------------------C-CC-CCcEEEEE--ccCCEEEEEEC
Confidence 555553220 0 0 00111000 0 00 11111111 12344455554
Q ss_pred -ecCCccHHHHHHHHHHhCCceEEEEEEEEee-cCc--eeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeC
Q 044730 256 -CADQKGLFYDILRTSKDLNIQIAYGRISSSV-KGY--RNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTN 331 (419)
Q Consensus 256 -~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t-~g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~ 331 (419)
.+++||+++++...|++++++|.. +.+.. .++ ...=.|.+... +..+...+.+.|...+.. .++.+..
T Consensus 446 ~~~~~~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~~~ 517 (587)
T PRK07431 446 NVPDRPGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVEDGP 517 (587)
T ss_pred CCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEEeC
Confidence 568899999999999999999998 55411 111 12223444311 111222333333322211 1111111
Q ss_pred CCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHH
Q 044730 332 RGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRI 408 (419)
Q Consensus 332 ~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i 408 (419)
....|.+.|. .+||+++++..+|.+.|+++.... | . ...=.|+|... ..++.
T Consensus 518 --------~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~-----S-~~~Is~vV~~~---------~~~~a 572 (587)
T PRK07431 518 --------AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T-----S-EIRTSCVVAED---------DGVKA 572 (587)
T ss_pred --------CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c-----c-ceEEEEEEeHH---------HHHHH
Confidence 2567888886 789999999999999999997644 3 2 03334666422 23566
Q ss_pred HHHHHHHH
Q 044730 409 VEKVKKTL 416 (419)
Q Consensus 409 ~~~l~~~l 416 (419)
..+|.+++
T Consensus 573 v~~Lh~~f 580 (587)
T PRK07431 573 LQAVHQAF 580 (587)
T ss_pred HHHHHHHh
Confidence 66666665
No 83
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.16 E-value=0.002 Score=50.81 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=49.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+.+...|+||+|++||.+|++.|+||.+..++. .-+. ..-++-+.-..| |+...++|..+|.|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~--Te~~--~iSRmtivv~~~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH--SEQP--GISNMEIQVDIQ----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc--cCCC--CceEEEEEEeCC----CHHHHHHHHHHHhCCc
Confidence 6889999999999999999999999999999987 3355 555554442213 4455677777776654
No 84
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0044 Score=46.42 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=42.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC----CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP----DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~----~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+.+..+|+||+|++|+.+++++|+||.+....... ++...-.|.+.. .+.+.++.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988776532 355444444433 123445556555544
No 85
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.14 E-value=0.0018 Score=46.83 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=40.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~ 158 (419)
|.+..+|+||.+++++.+|.++|+||.+..++...++..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999998865477777777665
No 86
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.11 E-value=0.0025 Score=49.45 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=46.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
..+.+...++||+|++|+.+|+..|.||.+..++- ..+. ..-.+-++-. | ++....+|..+|.|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~--te~~--~~sriti~~~-~----~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE--RDTS--GVSEMKLTAV-C----TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc--cCCC--CeeEEEEEEE-C----CHHHHHHHHHHHhCC
Confidence 36899999999999999999999999999998875 3344 3334433311 2 234446677766654
No 87
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.08 E-value=0.0037 Score=48.10 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=32.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEe
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMT 144 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T 144 (419)
.|.|.+.||+|++++|+.++++.|.||.+.++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~ 35 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP 35 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence 4789999999999999999999999999999976
No 88
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.03 E-value=0.016 Score=56.76 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=32.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRIS 283 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~ 283 (419)
+.+|+|.|+|||||++.|+.+|+++|+||.+.+-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 56899999999999999999999999999996654
No 89
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.99 E-value=0.0061 Score=49.29 Aligned_cols=68 Identities=12% Similarity=0.306 Sum_probs=50.2
Q ss_pred CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730 106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179 (419)
Q Consensus 106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v 179 (419)
+.....|.+...|+||.|++|++.|+..|.||.+-.+--+.+...-=+..+.. +.+.+++|.++|...
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~------~~~~i~Qi~kQL~KL 72 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN------DDQRLEQMISQIEKL 72 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc------CchHHHHHHHHHhCC
Confidence 34456799999999999999999999999999998877655543222222322 135788888888873
No 90
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.97 E-value=0.0031 Score=45.56 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=39.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
+++...|+||.|.+++.+|.++|+||.+..+.... +++ +.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~--~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEF--GILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCc--EEEEEEECC
Confidence 35788999999999999999999999999988733 466 877887765
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0068 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.+.|..+|+||.|++|+.+|.++|+||.+.-+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~ 36 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIAD 36 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe
Confidence 5788999999999999999999999999998877
No 92
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.94 E-value=0.0047 Score=55.75 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=46.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
..+.+.+.||||+|++||.+|+++|+||.+..+..-. .. ....+-+.-+.+ +...++|+++|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~--~~--~~sr~TIvv~~~-----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAE--QK--GISRITMVVPGD-----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcC--CC--CccEEEEEEECC-----HHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999997622 23 333554442221 222466777666654
No 93
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.93 E-value=0.0029 Score=48.68 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=43.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+++.+.||+|+|++|+.+|++.|++|.+.++.+ . . - ++++ -.+.+.+++..+.++|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~--~--~--~---i~l~----i~v~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP--K--G--R---IYLN----FPTIEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec--C--C--e---EEEE----eEecCHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999877 2 2 2 2222 112345566677766653
No 94
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0071 Score=46.26 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchh-HHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQ-RREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~-r~~~i~~~L~~ 178 (419)
.|.+.++|+||++++|+.+|+++|.||......+.++|.+--.|.+... +.+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence 5789999999999999999999999999987755345654444555431 222 45555555554
No 95
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.89 E-value=0.0044 Score=50.09 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=48.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
...|.+...|+||+|++|+..|++.|.||.+..++- .++. ..-++.+.-. + ++..++|..+|.|.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~--te~~--~iSRmtivv~-~-----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP--IQDG--DKSRIWLLVN-D-----DQRLEQMISQIEKL 72 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee--cCCC--CceEEEEEEc-C-----chHHHHHHHHHhCC
Confidence 457999999999999999999999999999998876 5555 4455554322 2 23456777776654
No 96
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0081 Score=48.30 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=50.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+.+-+..+|+||-|+++-..|+++|+|+.+.+... ...+. -.+.|||. -+|. .++.. +++.+.|++.|
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~-~~Y~FfVD-ieg~--~~~~~-~~~l~~L~~~~ 82 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNK-DEYEFFIN-LDKK--SAPAL-DPIIKSLRNDI 82 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEEE-EEcC--CCHHH-HHHHHHHHHHh
Confidence 366777779999999999999999999999988866 43443 45899996 4454 23333 55556666654
No 97
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.01 Score=44.60 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=32.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT 145 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~ 145 (419)
+.+.+..+|+||.|++++..|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 468889999999999999999999999998877764
No 98
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.86 E-value=0.0082 Score=46.62 Aligned_cols=64 Identities=6% Similarity=0.073 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
..|.+...|+||.|++|+++|+..|+||.+-.+--+.+....-+..+... ++..+++|.++|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999988875454433323222221 35667888888876
No 99
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.79 E-value=0.01 Score=52.79 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=51.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
.|++...|+||.|++|+++|+..|+||.+-.+..+. .|..--+|.|.. +...++++.++|....
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 688999999999999999999999999999888765 455554555543 3556888888888743
No 100
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.78 E-value=0.0089 Score=44.36 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
+.+.+.|+||+|++|+.+|+++|++|.+..+..+..++. ..-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~--~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGI--AYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCE--EEEEEEcC
Confidence 678899999999999999999999999999877221133 55666663
No 101
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0068 Score=57.54 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=33.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
..+++++.|+|+|||++.|++.|+.+|+||.++.-++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 4578999999999999999999999999999977664
No 102
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.013 Score=43.95 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD 147 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~ 147 (419)
..+.+..+|+||.|++++..|+++|+||.+..++...+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 36788999999999999999999999999998877433
No 103
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.77 E-value=0.011 Score=52.68 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
..|++...|+||.|++|+++|+.+|+||.+-.+..+. +|..--+|.|.. +...++++..+|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999998887755 455544555543 3566888988888743
No 104
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.73 E-value=0.0081 Score=53.39 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=46.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+.+...|+||.|++|+.+|+++|+||.+.-+.. .++.....-+|.+. | ++...+++..+|.|.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~--t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP--TEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee--cCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCc
Confidence 6899999999999999999999999999998877 43442233344443 2 2344566777766543
No 105
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.73 E-value=0.013 Score=45.59 Aligned_cols=63 Identities=10% Similarity=0.137 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
..|.+...|+||.|++++++|+..|+||.+-.+-.+.++...-+-.+.. ++..++.|.++|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~------~~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA------SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC------CCchHHHHHHHHhc
Confidence 4789999999999999999999999999999998766665444433333 23457888888877
No 106
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.013 Score=43.86 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=37.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT 157 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~ 157 (419)
.|.+.++|+||.|++++..|+++++||.+....+..++...-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887763345543334443
No 107
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.68 E-value=0.011 Score=46.68 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=48.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v 179 (419)
.|.+...|+||.|++|++.|+..|+||.+-.+-.+.+..+--+-.+... .++.-+++|.++|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~----~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI----QDDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC----CCHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999998887665433333222220 1356678888888773
No 108
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.021 Score=42.95 Aligned_cols=63 Identities=24% Similarity=0.234 Sum_probs=43.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
..+.+..+|+||.|+++++.|+++|++|..........+.. ..-.|.++.. ...+++.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~--~~~~i~v~~~--------~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIG--GILRISFKTQ--------EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCc--EEEEEEECCH--------HHHHHHHHHHHH
Confidence 35788999999999999999999999999887766321212 3445666522 123556666654
No 109
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.67 E-value=0.0084 Score=46.57 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
..+.+...++||+|++|+.+|+..|.||.+..+.. ..+....--++-+ + +..+ .++|..+|.|.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~--t~~~~~sriti~v-~-~~~~------i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ--NTDAQNINIELTV-A-SERP------IDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee--cCCCCEEEEEEEE-C-CCch------HHHHHHHHhcC
Confidence 47899999999999999999999999999999977 3333223333444 2 3323 35666666654
No 110
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.014 Score=44.25 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=42.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
-|.+.+.|+||++++++.+|+++|+||.+....+..+ +.+ .+..++.. .+.+.++.+.+.|++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~-~~~i~~~~----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETA-PVVIVTHE----TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCce-eEEEEEcc----CCHHHHHHHHHHHHc
Confidence 4788999999999999999999999999887755334 433 33333331 133444445455443
No 111
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.63 E-value=0.0087 Score=44.41 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=38.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEE
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFI 156 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V 156 (419)
+.+.+.|+||++++++.+|+++|+||.+..+.... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999988743 3666666666
No 112
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.60 E-value=0.015 Score=52.47 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEE-EEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVL-DLFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~-d~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
..|.+.+.|+||++++|+++|+..|.||.+-.+..+.+.... ..+.+.. +...+++|.++|....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999998765544332 2233221 2333888999888844
No 113
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.021 Score=43.58 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH-HHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ-ARNRIVEKVKK 414 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~-~~~~i~~~l~~ 414 (419)
.+.+.+.||||+|++|+++|++.|++|......+.. +.. +.-.|-+.-. +.+ +++++.++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~--~~i~~~v~v~------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGR--ANVTISIDTS------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCe--EEEEEEEEcC------chHHHHHHHHHHHhc
Confidence 478999999999999999999999999998775511 123 5555666432 233 55667777664
No 114
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.021 Score=43.30 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.+.+.+.||||+|.+|+.+|.++|++|......+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~ 35 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKE 35 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcc
Confidence 4788999999999999999999999999988765
No 115
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.56 E-value=0.024 Score=42.19 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.|.+.+.|+||++++++.+|++++.||.+....+. .++.+.-.|.+.. .+ ..++.+.+.|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence 36788999999999999999999999999988774 3455443444432 12 445556555554
No 116
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.54 E-value=0.023 Score=42.25 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=43.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.+.+.|+||+|.+|+.+|+++|++|.+....+.. ++. .+.-.|.+... + .+.+++.++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~-~~~~~~~~~~~------~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTE-DPG-ISRITIVVEGD------D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecC-CCC-eEEEEEEEECC------H-HHHHHHHHHHhC
Confidence 478899999999999999999999999999887721 233 13334444321 1 334566666653
No 117
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.53 E-value=0.02 Score=51.06 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=46.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
..+.+...|+||.|++|+.+|+++|+||.+..+.. ..+.....-+|.+. | ++...+++..+|.|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~--te~~~~sriti~V~---~----~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP--TEDPGLSRMTIVTS---G----DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee--cCCCCEEEEEEEEE---C----CHHHHHHHHHHHhccc
Confidence 36899999999999999999999999999988766 33342233334343 2 2344566776666543
No 118
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.021 Score=42.45 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+.+.+.||||.|.+|+.+|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999887765
No 119
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.48 E-value=0.018 Score=44.37 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=43.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
+-+...|+||-|++|-..|+.+|+|+.+.+... ...+. -.+.|||+ -+| .++. .+++.+.|.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP--~~~~~-~~y~Ffvd-~~~---~~~~-~~~~l~~L~~ 65 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP--SRRNG-SEYEFFVD-CEV---DRGD-LDQLISSLRR 65 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC--CCCCC-ceEEEEEE-EEc---ChHH-HHHHHHHHHH
Confidence 445558999999999999999999999888765 43443 56899995 445 2222 3444455543
No 120
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.40 E-value=0.025 Score=41.97 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEe
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFIT 157 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~ 157 (419)
|.+.++|+||.+++++..|+++|+||.+....... ++...-.|.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 57889999999999999999999999988877632 35543334443
No 121
>PRK08577 hypothetical protein; Provisional
Probab=96.36 E-value=0.036 Score=47.96 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=49.7
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+....+.|.+.+.|+||+|++|+.+|++++.||.+....+.. ++.+...|.+.-+.. ...++.+.+.|++
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK 122 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence 3444578999999999999999999999999999998887754 444433444432111 1345666666655
No 122
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.35 E-value=0.043 Score=42.73 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+.+.+..+|+||-|+++..+|+++|+||.+-......++...-.|+|.-... .+.+....+-+.|+.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence 3567778999999999999999999999998877654545545677654321 233444444444443
No 123
>PRK11899 prephenate dehydratase; Provisional
Probab=96.31 E-value=0.018 Score=56.09 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQA 404 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~ 404 (419)
-|.+-+..+|+||.|+++-.+|+++|||+.+.+..- .+.+. -.++|||+ .+|.. .++..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP--~~~~~-~~Y~F~id-~eg~~-~d~~v 252 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYM--VGGSF-TATQFYAD-IEGHP-EDRNV 252 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee--cCCCC-ceEEEEEE-EECCC-CCHHH
Confidence 466777778999999999999999999999988865 54554 48999995 55643 44443
No 124
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.31 E-value=0.019 Score=43.36 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=37.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEec
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITD 158 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~ 158 (419)
+.+..+|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4568999999999999999999999998877654 3466666666654
No 125
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.28 E-value=0.033 Score=38.19 Aligned_cols=47 Identities=34% Similarity=0.499 Sum_probs=36.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~ 158 (419)
|.+.++|++|++++++++|.+++++|.........+.....+++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46889999999999999999999999999887643333344444443
No 126
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.021 Score=42.09 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=29.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+.+.-+||||-|++++.+|.++|+||.+.....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence 677889999999999999999999999887755
No 127
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.024 Score=41.68 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=34.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEE
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFI 156 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V 156 (419)
+.+.-+|+||-|++++.+|+++|+||.+...+... .+...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67788999999999999999999999988776533 2454334444
No 128
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.019 Score=42.79 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=42.4
Q ss_pred EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeC-----CCeEEEEEEEEcCCCCCCCCHHHHHHHHHhh
Q 044730 23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTD-----GRWCYIVLWVVPDASSDKVDWESLKNRLLSV 87 (419)
Q Consensus 23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istd-----g~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~ 87 (419)
+.|..+|++|+|.+++++|.+.|..|.....+.+ .+.....|.|.-. +. .+.+.+...|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-~~--~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GA--EHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-CH--HHHHHHHHHHHHc
Confidence 3678899999999999999999999998887764 2334444555432 21 2334555555543
No 129
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.22 E-value=0.023 Score=42.89 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=35.5
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
-+...|+||.+++|+..|+++|++|.+........++. +.-+|-+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEeC
Confidence 45889999999999999999999999888765322344 55555554
No 130
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.21 E-value=0.039 Score=42.34 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=44.1
Q ss_pred EEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730 346 LCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 346 v~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
+.-.|+||-|++|...|+++|+||.+.+... ..+.. ..+.||++ -+|. .. +...+++.+.|++.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp-~~~~~--~~~~f~id-~~~~-~~-~~~~~~~l~~l~~~ 67 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRP-SRKGL--WEYEFFVD-FEGH-ID-DPDVKEALEELKRV 67 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeee-cCCCC--ceEEEEEE-EECC-CC-CHHHHHHHHHHHHh
Confidence 4457999999999999999999999986554 22334 77889885 3342 12 23335566666553
No 131
>PRK08577 hypothetical protein; Provisional
Probab=96.17 E-value=0.09 Score=45.49 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe
Q 044730 245 LSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ 298 (419)
Q Consensus 245 ~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~ 298 (419)
+....+.+.|.+.|+||+|++++.+|++++++|.+....+...++.+.-.|.+.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 444578899999999999999999999999999986655422233333334444
No 132
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.04 Score=41.90 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=42.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec--CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT--PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~--~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+.+.-+|+||-|++++..|+++|.||.+...... ..+.....+.+... . +..++.|.+.|++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e-~----~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPM-D----RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEe-c----chHHHHHHHHHhC
Confidence 5778899999999999999999999998866553 23444444554431 1 2235555555543
No 133
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.10 E-value=0.065 Score=38.67 Aligned_cols=46 Identities=30% Similarity=0.402 Sum_probs=35.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT 157 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~ 157 (419)
|.+.++|+||.+++++..|.+++++|.+..+....++...-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 4678999999999999999999999999988764334443334443
No 134
>PRK04435 hypothetical protein; Provisional
Probab=96.10 E-value=0.061 Score=47.32 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCch-hHHHHHHHHHHH
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTK-QRREETCEHMIA 178 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~-~r~~~i~~~L~~ 178 (419)
...+....|.+...|+||+|++|+.+|+++|+||.........+|.+--.|.+... +. ..++.+-+.|++
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-----~~~~~L~~Li~~L~~ 134 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-----SMEGDIDELLEKLRN 134 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-----ChHHHHHHHHHHHHc
Confidence 34456789999999999999999999999999999887765446765445555432 12 245555555554
No 135
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.09 E-value=0.042 Score=40.92 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.+.+...|+||.|++|+..|++++++|.+....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~ 35 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFI 35 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEec
Confidence 4778899999999999999999999999888766
No 136
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.062 Score=40.50 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=36.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
+.+.+.-+|+||.|.+++.+|.++|++|.+........++. ..-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~--~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDN--KILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCe--EEEEEEEe
Confidence 46888999999999999999999999999886544211222 44555554
No 137
>PRK07431 aspartate kinase; Provisional
Probab=96.03 E-value=2.8 Score=45.20 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=106.4
Q ss_pred EEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccchhh
Q 044730 111 LLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEI 189 (419)
Q Consensus 111 ~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~~~ 189 (419)
.+++.+ .+++|++++|...|+++|+||.--.......+..--.|.+.. +.+.+..+.|++ +....
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~~~----- 337 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAPAL----- 337 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHHHc-----
Confidence 455543 688999999999999999999866443322222211344432 223333333433 22110
Q ss_pred hccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCccHHHHH
Q 044730 190 QLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKGLFYDI 266 (419)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLl~~i 266 (419)
. ...+.+. .+...|.|.+. ++||+++++
T Consensus 338 ~---------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki 368 (587)
T PRK07431 338 G---------------------------------------------GAEVLVE----TNVAKLSISGAGMMGRPGIAAKM 368 (587)
T ss_pred C---------------------------------------------CCcEEEe----CCeEEEEEECCCcccCccHHHHH
Confidence 0 0012222 24557888885 799999999
Q ss_pred HHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCC-eeeeeC---C--CCC----C
Q 044730 267 LRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPL-RVMVTN---R--GPD----T 336 (419)
Q Consensus 267 ~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~-~v~~~~---~--~~~----~ 336 (419)
..+|++.+++|.. +.+ ..... .|.+. +...++..+.|...+.... +..+.+ + +.. .
T Consensus 369 ~~aL~~~~I~i~~--i~s--Se~~I--s~vv~--------~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa 434 (587)
T PRK07431 369 FDTLAEAGINIRM--IST--SEVKV--SCVID--------AEDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVA 434 (587)
T ss_pred HHHHHHCCCcEEE--EEc--CCCEE--EEEEc--------HHHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEE
Confidence 9999999999987 443 11212 24553 2233444555555552211 111110 0 000 0
Q ss_pred CCCcceEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEe
Q 044730 337 ELLVANPVELC-GKGRPRVFYDVTLALKALGICIFSAEIG 375 (419)
Q Consensus 337 ~~~~~t~lev~-~~DRpGLL~~It~~L~~~gl~I~~A~I~ 375 (419)
.......|.|. ..++||++++|...|.++|++|.....+
T Consensus 435 ~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 435 LDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 01123345543 3578999999999999999999987543
No 138
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.86 E-value=0.011 Score=44.28 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=34.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT 157 (419)
Q Consensus 112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~ 157 (419)
+.+.+.|+||++++++.+|++.|+||.+....+ .+|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcC
Confidence 567899999999999999999999998876554 335554444443
No 139
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.64 E-value=0.049 Score=42.09 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
+-+..+|+||-|+++-..|+.+|+|+.+.+... ..... -.+.|||+ -+|.. ...+++.+.|++
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~-~~y~F~id-~e~~~----~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRS-SEFEIFVD-CECDQ----RRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEEE-EEcCH----HHHHHHHHHHHH
Confidence 445568999999999999999999999888866 43443 56899995 34543 133445555544
No 140
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.60 E-value=0.072 Score=40.44 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=30.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+.+.-+||||-|++++..|+++|+||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 577889999999999999999999999887665
No 141
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.55 E-value=0.019 Score=42.92 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=34.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
+-+.+.||||+|.+|+.+|.+.|+||......+ .+.. +.-.|-+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcC
Confidence 345789999999999999999999998876655 3333 54445443
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.47 E-value=0.039 Score=41.19 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe-cCCCCCCCCHHHHHHHHHHHHHH
Q 044730 350 GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD-ESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 350 DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~-d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
|+||+|.+|+.+|+..|+||.+..++. ..+. ....+.++ +.+..+ .++|..+|.|.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~--~~~~--~~~riti~v~~~~~~------i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP--TEDP--GISRITIVVSGDDRE------IEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE---SST--TEEEEEEEEES-CCH------HHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee--cCCC--CEEEEEEEEeeCchh------HHHHHHHHhcc
Confidence 689999999999999999999999988 3344 33334332 222222 35566666654
No 143
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.23 E-value=0.076 Score=39.63 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 118 DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
|+||.|.+|+++|...|+||.+-.+..+.++...-+..+... ++...+.|..+|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-----~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-----DDREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-----CchhHHHHHHHHhc
Confidence 789999999999999999999999988665544444333331 23356778777776
No 144
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.23 E-value=0.21 Score=40.13 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730 247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKKVVDPKQQTALCFHLKEEM 321 (419)
Q Consensus 247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al 321 (419)
...+.+.+..+|+||-|+++...|+++|+|+.+ |.++..... ..=.|++..+|. .+ ...+.+.+.|...|
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDI 82 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHh
Confidence 344566666799999999999999999999998 776543232 233577876665 23 34455556665555
No 145
>PRK07334 threonine dehydratase; Provisional
Probab=95.19 E-value=0.12 Score=53.17 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=49.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeeccc--CCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHST--SHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~--Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.|+|.+.||||+|++|+.+|++.++||.+....+... .+. .+.-.|-+. +.+.++++++..+|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~-~~~i~l~i~------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAK-GAELELVIE------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCC-eEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999998876200 122 133334332 3356677888888876
No 146
>PRK06635 aspartate kinase; Reviewed
Probab=95.13 E-value=0.8 Score=46.91 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=65.4
Q ss_pred eEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEee-cCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc--CC
Q 044730 249 HTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSSV-KGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML--HP 324 (419)
Q Consensus 249 ~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t-~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~--~~ 324 (419)
...|++. -.++||+++++..+|++.|++|.. +.+.. .++...=.|.+.. +..+...+.|.+... ..
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVPR--------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEcH--------HHHHHHHHHHHHHHHHcCc
Confidence 4455554 367899999999999999999997 54411 1112232344431 122333333443110 10
Q ss_pred CeeeeeCCCCCCCCCcceEEEEEe---CCCcchHHHHHHHHHhCCceEEEE
Q 044730 325 LRVMVTNRGPDTELLVANPVELCG---KGRPRVFYDVTLALKALGICIFSA 372 (419)
Q Consensus 325 ~~v~~~~~~~~~~~~~~t~lev~~---~DRpGLL~~It~~L~~~gl~I~~A 372 (419)
..+.+. .....+.+.+ .++||++++|.++|.+.|++|...
T Consensus 332 ~~i~~~--------~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 332 ESVTYD--------DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred ceEEEc--------CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 011111 1256788877 589999999999999999999874
No 147
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.13 E-value=0.17 Score=36.40 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+.+.+.|+||++.+++..|.+++++|....+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEE
Confidence 467889999999999999999999999998877
No 148
>PRK06291 aspartate kinase; Provisional
Probab=95.11 E-value=2 Score=44.94 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=82.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-
Q 044730 248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH- 323 (419)
Q Consensus 248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~- 323 (419)
+.+.|+|.+. +.||+++++..+|+++|++|.. |...+. + ..=.|.+.. +..++..+.|...+..
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~ss-e-~sIsf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQGSS-E-SNISLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEecCC-C-ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 4567888765 7899999999999999999987 543111 1 222345542 1222333444443321
Q ss_pred -CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730 324 -PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL 399 (419)
Q Consensus 324 -~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l 399 (419)
...+.+.+ ....|.+.|. +++|++.++..+|.+.|++|....-++.. ..-.|.|...
T Consensus 388 ~~~~i~~~~--------~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe------~~Is~vV~~~----- 448 (465)
T PRK06291 388 LVRDVTFDK--------DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSE------VNISFVVDEE----- 448 (465)
T ss_pred cCcceEEeC--------CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecccc------CeEEEEEeHH-----
Confidence 11121111 2457888886 69999999999999999999865544411 3344556422
Q ss_pred CCHHHHHHHHHHHHHHH
Q 044730 400 ASSQARNRIVEKVKKTL 416 (419)
Q Consensus 400 ~~~~~~~~i~~~l~~~l 416 (419)
..++...+|.+++
T Consensus 449 ----d~~~av~~Lh~~f 461 (465)
T PRK06291 449 ----DGERAVKVLHDEF 461 (465)
T ss_pred ----HHHHHHHHHHHHh
Confidence 2255566666654
No 149
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.11 E-value=0.19 Score=37.80 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=36.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEe
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFIT 157 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~ 157 (419)
+.+.+..+|+||.+++++.+|+++|+||.+....-. ..+...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 468889999999999999999999999998765432 234544455554
No 150
>PRK07334 threonine dehydratase; Provisional
Probab=95.07 E-value=0.14 Score=52.65 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=48.4
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec----CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT----PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.|.|.+.||||+|++|+.+|++.+.||.+....+. .++.+.-.|.+.- .+.+.++++.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999988763 3555433444432 135556666666665
No 151
>PRK06635 aspartate kinase; Reviewed
Probab=95.05 E-value=2.4 Score=43.41 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=66.5
Q ss_pred eeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730 109 LYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC 187 (419)
Q Consensus 109 ~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~ 187 (419)
...|++.+ .++||.+++++.+|++.|+||.-.......+|..--.|.|. .+..++..+.|.+ +...
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~-~~~~---- 328 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEE-VKDE---- 328 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHH-HHHH----
Confidence 34566665 68899999999999999999996433322222332234443 2223333344443 2111
Q ss_pred hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEe---cCCccHHH
Q 044730 188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKC---ADQKGLFY 264 (419)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~DrpGLl~ 264 (419)
+. ...|.+. .+...+.|.+ +++||.++
T Consensus 329 -~~---------------------------------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a 358 (404)
T PRK06635 329 -IG---------------------------------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAA 358 (404)
T ss_pred -cC---------------------------------------------cceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence 00 0011111 2345677766 68999999
Q ss_pred HHHHHHHhCCceEEE
Q 044730 265 DILRTSKDLNIQIAY 279 (419)
Q Consensus 265 ~i~~~L~~~~~~I~~ 279 (419)
++..+|++.|+||..
T Consensus 359 ~i~~~La~~~Ini~~ 373 (404)
T PRK06635 359 KMFEALAEEGINIQM 373 (404)
T ss_pred HHHHHHHHCCCCEEE
Confidence 999999999999987
No 152
>PLN02551 aspartokinase
Probab=95.02 E-value=0.9 Score=48.24 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+-+.|+|.+. +.||+++++...|+++|++|.. |.+ + + ..=.|.+..+. +...+.+++..+.+...+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Iss-S--e-~sIs~~v~~~~--~~~~~~i~~~l~~l~~el~~ 435 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VAT-S--E-VSISLTLDPSK--LWSRELIQQELDHLVEELEK 435 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eec-c--C-CEEEEEEehhH--hhhhhhHHHHHHHHHHHhhc
Confidence 34567888765 6899999999999999999998 654 2 2 22235555211 11111111111122222332
Q ss_pred CCeeeeeCCCCCCCCCcceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 324 PLRVMVTNRGPDTELLVANPVELCGK--GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~t~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
...+.+.. ....|.|.|. .+||+++++..+|.+.|++|.....++ .. ..-.|.|.+.
T Consensus 436 ~~~V~v~~--------~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----Se--inIS~vV~~~ 494 (521)
T PLN02551 436 IAVVNLLQ--------GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SK--VNISLIVNDD 494 (521)
T ss_pred CCeEEEeC--------CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CC--cEEEEEEeHH
Confidence 21222211 2456777765 689999999999999999998766555 11 4445666543
No 153
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.89 E-value=0.13 Score=34.99 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=39.4
Q ss_pred EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeC-CCeEEEEEEEEcCC
Q 044730 23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTD-GRWCYIVLWVVPDA 70 (419)
Q Consensus 23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istd-g~w~~dvf~v~~~~ 70 (419)
|.+.++|++|++.++.++|.+.++.|.+...++. +.|...++.+++..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGD 49 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEech
Confidence 4688999999999999999999999999998884 35556666665553
No 154
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.89 E-value=0.26 Score=37.60 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=41.7
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCc-eeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGY-RNMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~-~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
+.+..+|+||-|+++...|+++|+||.+ |.+....+ ...-.|++..+|.. . +...+.+.+.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~-~-~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI-D-DPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC-C-CHHHHHHHHHHHH
Confidence 3455589999999999999999999999 65543222 33334666655531 1 2345555555554
No 155
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.85 E-value=2.2 Score=43.69 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=67.2
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-
Q 044730 248 AHTLLQIK---CADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH- 323 (419)
Q Consensus 248 ~~t~v~V~---~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~- 323 (419)
+...|+|. -.++||+++++..+|.+.+++|.. +.+ ...+ ..=.|.+.. +..+++.+.|......
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSE-TSISLTVDE--------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCC-ceEEEEEeH--------HHHHHHHHHHHHHHHhc
Confidence 45678888 468899999999999999999987 543 1111 111245531 1233334444443311
Q ss_pred C-CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044730 324 P-LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFS 371 (419)
Q Consensus 324 ~-~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~ 371 (419)
. ..+.... ....|.|.|. ++||+++++.++|.+.|++|..
T Consensus 327 ~~~~i~~~~--------~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 327 GLDRVEVEE--------GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCceEEEeC--------CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 1111111 2457888886 7899999999999999999985
No 156
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=94.85 E-value=3.5 Score=42.98 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+.+.|+|.+. ..+|.++++...|.++|++|.. |.+. .+. ..=.|.+... ...+..+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~~-~~i~~~v~~~--------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-ISE-VSISFTVPES--------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cCC-CeEEEEEchh--------hHHHHHHHHHHHHhh
Confidence 45677777764 3459999999999999999988 6542 112 2233555411 112222333333321
Q ss_pred CC-eeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730 324 PL-RVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL 399 (419)
Q Consensus 324 ~~-~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l 399 (419)
.. ++.+.. ....|.+.|. ..||+.+++..+|++.++||.... + .. ..-.|.|.+.+.
T Consensus 373 ~~~~v~~~~--------~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s----Se--~~Is~vV~~~~~--- 433 (447)
T COG0527 373 LLAEVEVEE--------GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S----SE--ISISFVVDEKDA--- 433 (447)
T ss_pred hcceEEeeC--------CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c----CC--ceEEEEEccHHH---
Confidence 11 121111 1346777766 679999999999999999999876 3 11 556677764433
Q ss_pred CCHHHHHHHHHHHHHHH
Q 044730 400 ASSQARNRIVEKVKKTL 416 (419)
Q Consensus 400 ~~~~~~~~i~~~l~~~l 416 (419)
.+....|.+++
T Consensus 434 ------~~av~~LH~~~ 444 (447)
T COG0527 434 ------EKAVRALHEAF 444 (447)
T ss_pred ------HHHHHHHHHHH
Confidence 55556666654
No 157
>PRK04435 hypothetical protein; Provisional
Probab=94.84 E-value=0.29 Score=43.02 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=47.3
Q ss_pred EEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK 318 (419)
Q Consensus 241 v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 318 (419)
+..........+.+...|+||+|++|..+|+++|+||..-.... ..++.+.-.|.+...+ ....++.|.++|+
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~----~~~~L~~Li~~L~ 133 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSS----MEGDIDELLEKLR 133 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCC----hHHHHHHHHHHHH
Confidence 34444556778999999999999999999999999999843332 1234344345454211 0224556555554
No 158
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.14 Score=43.17 Aligned_cols=53 Identities=8% Similarity=-0.050 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCC
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEF 397 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~ 397 (419)
.|.+-+..+|+||-|++|-..|+.+|||+.+.+... .+.+.| .+.|||. -+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~~-eY~FfId-ieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEGG-DLEVLVR-CEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCCc-eEEEEEE-EEeC
Confidence 456777779999999999999999999999888766 545543 5888885 3453
No 159
>PRK08210 aspartate kinase I; Reviewed
Probab=94.11 E-value=4.3 Score=41.60 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=77.8
Q ss_pred CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCe
Q 044730 248 AHTLLQIKCADQ-KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLR 326 (419)
Q Consensus 248 ~~t~v~V~~~Dr-pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~ 326 (419)
+-..|+|...+. ||.+++|..+|+++|+||.. +.+ .. . .=.|.+.. +..+++.+.|.. +. ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~-~~-~--~is~~v~~--------~~~~~a~~~l~~-~~--~~ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INI-FP-T--EVVFTVSD--------EDSEKAKEILEN-LG--LK 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEe-cC-c--eEEEEEcH--------HHHHHHHHHHHH-hC--Cc
Confidence 445677766555 99999999999999999998 443 11 1 11244431 123333333333 11 11
Q ss_pred eeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730 327 VMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ 403 (419)
Q Consensus 327 v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~ 403 (419)
+.+.. ....|.|.|. ++||+++++..+|.+.|++|.. ++|. + ..-.|.|...
T Consensus 333 v~~~~--------~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s---~---~~is~vv~~~--------- 387 (403)
T PRK08210 333 PSVRE--------NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADS---H---TTIWVLVKEE--------- 387 (403)
T ss_pred EEEeC--------CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecC---C---CEEEEEEcHH---------
Confidence 22111 2457888886 7999999999999999999975 4441 1 3345666432
Q ss_pred HHHHHHHHHHHHH
Q 044730 404 ARNRIVEKVKKTL 416 (419)
Q Consensus 404 ~~~~i~~~l~~~l 416 (419)
..++..+.|.+++
T Consensus 388 ~~~~a~~~Lh~~f 400 (403)
T PRK08210 388 DMEKAVNALHDAF 400 (403)
T ss_pred HHHHHHHHHHHHh
Confidence 2355666666654
No 160
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.00 E-value=0.27 Score=54.04 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=48.8
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
...|.|.+.||+|||++|+.++++.++||.+..+.+.. ++.+...|.+.- .+.+.++++-..|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-----~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-----YNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-----CCHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999997743 566544555432 235556666666654
No 161
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.83 E-value=0.45 Score=36.50 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=35.8
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCC
Q 044730 252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDG 301 (419)
Q Consensus 252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g 301 (419)
+.+..+|+||-|+++...|+.+|+|+.+ |.+.+..+. ..=.|+++-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence 3445589999999999999999999998 776543332 33346777666
No 162
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.78 E-value=0.26 Score=50.31 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=44.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ 403 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~ 403 (419)
.|.+=+...|+||.|+++-..|+.+|||+.+.+..- .+.+. -.|.|||. .+|. ..++.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP--~~~~~-~~Y~Ffid-~eg~-~~d~~ 354 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP--IHGNP-WEEMFYLD-VQAN-LRSAE 354 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee--cCCCC-ceEEEEEE-EeCC-CCCHH
Confidence 566767778999999999999999999999988864 33333 68999995 5563 33443
No 163
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.76 E-value=0.22 Score=44.19 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCe
Q 044730 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGR 149 (419)
Q Consensus 110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~ 149 (419)
..+.+.+.++||.|++++++++++|.||..|+.+.-.+|.
T Consensus 3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~ 42 (218)
T COG1707 3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE 42 (218)
T ss_pred ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence 3578889999999999999999999999999999877775
No 164
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.60 E-value=0.49 Score=52.08 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=50.2
Q ss_pred EEEEeCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHH
Q 044730 239 ITVDNLLS-PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHL 317 (419)
Q Consensus 239 V~v~~~~~-~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 317 (419)
|.++.... .....|.|.+.||+|||++|+.+++..++||....+.+...++.+.-.|.+. +.+-..+.+|...|
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L 729 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKL 729 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 45543212 2345889999999999999999999999999997776421134444345554 23345666666665
Q ss_pred H
Q 044730 318 K 318 (419)
Q Consensus 318 ~ 318 (419)
+
T Consensus 730 ~ 730 (743)
T PRK10872 730 N 730 (743)
T ss_pred h
Confidence 5
No 165
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.3 Score=47.31 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=44.3
Q ss_pred cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCC
Q 044730 340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFP 398 (419)
Q Consensus 340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~ 398 (419)
..|.+=+..+|+||-|+++-.+|+.+|||+.+.+..- .+.+. -.+.|||. .+|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP--~k~~~-~~Y~F~iD-~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRP--LKTGL-GEYLFFID-IEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecc--cCCCC-eeEEEEEE-EecCc
Confidence 3678888888999999999999999999999888755 44442 67899995 55544
No 166
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.53 E-value=0.38 Score=52.84 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=47.8
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.|.|.+.||+|+|++|+.+++..++||.++...+..++.+...|.+.- .+.+.+++|-..|+.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-----RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999987744455444444432 134556666555554
No 167
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.39 E-value=0.4 Score=35.86 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=34.7
Q ss_pred ceEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 341 ANPVELCGK----GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 341 ~t~lev~~~----DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
...|.|.+. |.||+++.++..|.+.||+|.... | + -.+.|+|...
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S----~---~~~~ilV~~~ 54 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S----E---ISISILVKEE 54 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E----S---SEEEEEEEGG
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E----e---eeEEEEEeHH
Confidence 456777777 799999999999999999998776 5 1 3567778643
No 168
>PRK06382 threonine dehydratase; Provisional
Probab=93.36 E-value=0.97 Score=46.47 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCC
Q 044730 29 DKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPS 108 (419)
Q Consensus 29 dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (419)
.+.|++++-+....--.+ .++.+..+|. -.|+-+++ |+ +|...+.+.++..+ .....
T Consensus 273 ~~~gi~~epsga~~laal--~~~~~~~~~~--~Vv~i~sG--Gn--~d~~~~~~~~~~~~---------------~~~~~ 329 (406)
T PRK06382 273 EREKIVAEPSGAVGLAAI--MEGKVDVKGK--KVAIVVSG--GN--INPLLMSKIIYKEL---------------ENLGQ 329 (406)
T ss_pred HHcCceechHHHHHHHHH--HhccccCCCC--EEEEEeCC--CC--CCHHHHHHHHHHHH---------------HhcCC
Confidence 455665554433222222 1223333453 24444543 65 57677766665432 11234
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEE----ecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM----TTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~----T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.++|.-+|+||-|++++.+|.++|+||.+.... ....+...-+|.|... +++..+.|.+.|++
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 67899999999999999999999999999987765 3334555556666542 23444566666655
No 169
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.25 E-value=0.091 Score=41.56 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=42.3
Q ss_pred EEEEEeC-CCChHHHHHHHHHHcCCeEEEEEEEec--------CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 112 LKYCCVD-RKGLLHDATKVLTELEFTIQRVKVMTT--------PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 112 i~v~~~D-rpGLl~~i~~vL~~~g~nI~~A~i~T~--------~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
|++.|+| +.|++++|+++|+++|+||.+-+-.+. ...+..-.|.|..+. ...+.+++.|..
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~ 71 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLE 71 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHH
Confidence 7899999 999999999999999999976544320 012334455565321 235667777776
No 170
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.19 E-value=0.58 Score=36.09 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.0
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCC
Q 044730 252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGK 302 (419)
Q Consensus 252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~ 302 (419)
+.+..+|+||-|+++...|+.+|+|+.+ |.+++.... ..-.|+++.+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~--IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVH--IESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC
Confidence 3445589999999999999999999999 776543333 233467776664
No 171
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.94 E-value=0.74 Score=34.52 Aligned_cols=60 Identities=10% Similarity=0.000 Sum_probs=42.1
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.-+||||=|.++..++.+ |.||....=.. .+.. ...+++.-+.. +++..+++.++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~--~~~v~v~ie~~-----~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGD--EARVLVGIQVP-----DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCC--ceEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 46678999999999999999 99999876655 3333 33444333222 35566788888776
No 172
>PRK09034 aspartate kinase; Reviewed
Probab=92.93 E-value=2.7 Score=43.91 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=74.6
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
+-+.|++.+ .++||+++++..+|+++|++|.. +.+ +. ..=.|.+..+ .+. ...+..+.+.|...+. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~s---s~-~sis~~v~~~--~~~-~a~~~~l~~el~~~~~-~ 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MPS---GI-DDLSIIIRER--QLT-PKKEDEILAEIKQELN-P 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--EcC---CC-cEEEEEEeHH--Hhh-HHHHHHHHHHHHHhhC-C
Confidence 456677774 67899999999999999999998 432 12 2223666521 111 1111344444443331 1
Q ss_pred CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 325 LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 325 ~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
..+.... .-..|.+.|. ++||+++++..+|.+.|++|....-++. + ..-.|.|.+
T Consensus 377 ~~I~~~~--------~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S---e---~~Is~vV~~ 434 (454)
T PRK09034 377 DELEIEH--------DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS---E---ISIMFGVKN 434 (454)
T ss_pred ceEEEeC--------CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC---c---ceEEEEEcH
Confidence 1122111 2457888664 7899999999999999999987654441 1 344566653
No 173
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.86 E-value=3.7 Score=46.16 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+.+.|+|.+. ++||+++++..+|+++|++|.. |.. +..+ ..=.|.+..+ .. +...+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Isq-ssSe-~sIsf~V~~~--d~--~~av~~L~~~f~~el~~ 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--ITQ-SSSE-YSISFCVPQS--DA--AKAKRALEEEFALELKE 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EEc-CCCC-ceEEEEEeHH--HH--HHHHHHHHHHHHHHhcc
Confidence 45678888865 6899999999999999999987 443 1112 2223555421 00 11123333333322321
Q ss_pred --CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 324 --PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 324 --~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
...+.+.. ....|.+.|. ++||++.++..+|.+.|++|....-++
T Consensus 385 ~~~~~i~~~~--------~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs 434 (819)
T PRK09436 385 GLLEPLEVEE--------NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS 434 (819)
T ss_pred CCcceEEEeC--------CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence 11122111 2567888887 789999999999999999998765444
No 174
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=92.79 E-value=11 Score=38.49 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=28.0
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEE
Q 044730 248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
+...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 4567888874 7899999999999999999985
No 175
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.56 E-value=0.88 Score=34.11 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=38.5
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 113 KYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 113 ~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.-+||||=|.+++.+++. |.||..-+-.....+. +.++....- .+++..+++.+.|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~-~~v~v~ie~----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDE-ARVLVGIQV----PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCc-eEEEEEEEe----CCHHHHHHHHHHHHH
Confidence 56779999999999999999 9999987554322222 222222221 135556666666654
No 176
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.39 E-value=0.68 Score=50.84 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=47.7
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.- .+.+.+..|-..|+.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-----KNYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999998754565543444432 134455556555554
No 177
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.30 E-value=1 Score=49.51 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=46.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK 318 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 318 (419)
....|.|.+.||+|+|.+|+.+++..++||.+....+ ..++.+.-.|.+. +.+-..+..|...|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 3458899999999999999999999999999987654 2233333334444 223446666666654
No 178
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.23 E-value=0.82 Score=38.46 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=37.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeE-eEEEEecCCC
Q 044730 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNM-DLFIRQTDGK 302 (419)
Q Consensus 250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~-d~F~v~~~g~ 302 (419)
+.+.+..+|+||-|+++...|+.+|+|+.+ |.+.+...... =.|++..+|.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCceEEEEEEEEeC
Confidence 445555599999999999999999999999 77654433332 2467775554
No 179
>PRK06291 aspartate kinase; Provisional
Probab=92.22 E-value=13 Score=38.89 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=66.4
Q ss_pred CeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730 108 SLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS 184 (419)
Q Consensus 108 ~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~ 184 (419)
+...|++.|. +.+|+++++..+|+++|+||.--...+ ....+ .|.|.. +..++..+.|.+.+....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s-se~sI--sf~V~~--------~d~~~av~~L~~~~~~~~ 388 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS-SESNI--SLVVDE--------ADLEKALKALRREFGEGL 388 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC-CCceE--EEEEeH--------HHHHHHHHHHHHHHHHhc
Confidence 3567888774 789999999999999999998643323 22111 333332 222233333433332110
Q ss_pred cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCcc
Q 044730 185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKG 261 (419)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpG 261 (419)
...|.+. .+...|.|.|. +++|
T Consensus 389 ---------------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~g 413 (465)
T PRK06291 389 ---------------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPG 413 (465)
T ss_pred ---------------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcC
Confidence 0012221 23457888875 7999
Q ss_pred HHHHHHHHHHhCCceEEE
Q 044730 262 LFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~ 279 (419)
+..++..+|.+.|++|..
T Consensus 414 v~~rif~aL~~~~I~v~~ 431 (465)
T PRK06291 414 VAGRIFSALGESGINIKM 431 (465)
T ss_pred hHHHHHHHHHHCCCCEEE
Confidence 999999999999999986
No 180
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=92.01 E-value=2.4 Score=43.03 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEE
Q 044730 62 IVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVK 141 (419)
Q Consensus 62 dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~ 141 (419)
.|+.+++ || +|.+.+...++..+ . .......+.+.-+||||.|++++..++++|.||.+-.
T Consensus 277 vv~i~sG--Gn--~d~d~l~~vi~~gl-~--------------~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~ 337 (380)
T TIGR01127 277 IAVVLSG--GN--IDLNLLNKIIEKGL-V--------------KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKID 337 (380)
T ss_pred EEEEeCC--CC--CCHHHHHHHHHHHH-H--------------hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 4566665 65 67787776665422 1 1123568889999999999999999999999999875
Q ss_pred EE---ec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 142 VM---TT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 142 i~---T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
-. .. +.+.+.-.+.+... +++..+.|.+.|++
T Consensus 338 ~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 338 HDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred eeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 43 21 23444334444321 24555566666654
No 181
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.70 E-value=1.1 Score=33.46 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.2
Q ss_pred CeEEEEEEec----CCccHHHHHHHHHHhCCceEEE
Q 044730 248 AHTLLQIKCA----DQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 248 ~~t~v~V~~~----DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
++..|+|.++ |.||++++++..|++.|++|+.
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~ 40 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM 40 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE
Confidence 4667888888 7999999999999999999998
No 182
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.55 E-value=0.69 Score=43.04 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL 391 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v 391 (419)
...+-+.-.||||.+..|+.+|.++|+||..+.+++...|.. |.=+.-+
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~--Ai~vl~v 196 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNI--ALLTIEI 196 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCE--EEEEEEe
Confidence 346777889999999999999999999999999999554554 5444333
No 183
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.47 E-value=19 Score=37.32 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=64.5
Q ss_pred CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CC
Q 044730 248 AHTLLQIKCADQ--KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HP 324 (419)
Q Consensus 248 ~~t~v~V~~~Dr--pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~ 324 (419)
+...|+|.+.+- +|++.++..+|+++|++|.. |.+. ..+ ..=.|.+..+ ..++..+.|..... ..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~-~se-~sIs~~I~~~--------~~~~a~~~L~~~~~~~~ 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQS-SSE-TSISFTVDKE--------DADQAKTLLKSELNLSA 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEec-CCC-ceEEEEEEHH--------HHHHHHHHHHHHHHhcC
Confidence 455677776443 79999999999999999987 4431 112 1113454421 11222222322111 11
Q ss_pred C-eeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 044730 325 L-RVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAE 373 (419)
Q Consensus 325 ~-~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~ 373 (419)
. .+... ...+.+.+.|. ++||++++|..+|++.|++|....
T Consensus 369 ~~~I~~~--------~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 LSSVEVE--------KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cceEEEc--------CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0 12111 12567888664 789999999999999999998764
No 184
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.46 E-value=0.46 Score=48.19 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=39.8
Q ss_pred cceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 340 VANPVELCGK-GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 340 ~~t~lev~~~-DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
..+.+-+.-+ |+||.|++|+..|.++||||.+.++.- .++|.-. |||+=
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~----~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR----TPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec----ccCceEE-EEEEE
Confidence 4677888886 999999999999999999999999932 3445544 99863
No 185
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.16 E-value=1.7 Score=47.78 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=45.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK 318 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 318 (419)
..+.|.|.+.||+|+|++|+.+++..++||.+..+.+ ..++.+.-.|.+. +.+-..+..|...|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT-YGKREAILNITVE-----IKNYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 3458899999999999999999999999999977764 2223333234443 233445666655554
No 186
>PRK08210 aspartate kinase I; Reviewed
Probab=91.04 E-value=7.2 Score=39.94 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCCCeEEEEeCCCC-CchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCcccc
Q 044730 17 PTEPSVVTVNCPDK-NGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSY 95 (419)
Q Consensus 17 ~~~~t~v~v~~~dk-~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 95 (419)
..+.+.|+|...+. +|.+..+...|.+.|.+|--...|++. -.|.+.+. +.+.....+++.+...
T Consensus 268 ~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~------~~~~a~~~l~~~~~~v---- 333 (403)
T PRK08210 268 VSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDE------DSEKAKEILENLGLKP---- 333 (403)
T ss_pred cCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHH------HHHHHHHHHHHhCCcE----
Confidence 45778888888776 999999999999999998877666542 23544321 2233334444433110
Q ss_pred ccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEE
Q 044730 96 YFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQR 139 (419)
Q Consensus 96 ~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~ 139 (419)
....+...|.+.|. ++||+++++..+|++.|+||..
T Consensus 334 --------~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 334 --------SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --------EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 12245678888884 8999999999999999999974
No 187
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.02 E-value=1 Score=40.01 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
-+.+.+.++||.|.++|-.++++|.||..|.-....-|+. +.--|-+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~--~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEK--ALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCce--EEEEEEee
Confidence 4778899999999999999999999999998876333333 44444443
No 188
>PRK09181 aspartate kinase; Validated
Probab=90.98 E-value=21 Score=37.52 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=70.9
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
+.+.|+|.+. +.+|+++++..+|++++++|.. +.+ + . ..-.|.+..+ ....+++.+.|+..+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~s-s--~-~sis~~v~~~------~~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KAT-N--A-NTITHYLWGS------LKTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEe-c--C-cEEEEEEcCC------hHHHHHHHHHHHHhcCC-
Confidence 5667787654 7899999999999999999985 554 1 2 1223455321 12334555555544421
Q ss_pred CeeeeeCCCCCCCCCcceEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEEee
Q 044730 325 LRVMVTNRGPDTELLVANPVELCGKG--RPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 325 ~~v~~~~~~~~~~~~~~t~lev~~~D--RpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
..+.. .....|.+.|.+ +||+.+++..+|.+.|+||....-++
T Consensus 395 ~~i~~---------~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~ 439 (475)
T PRK09181 395 AEVTV---------RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM 439 (475)
T ss_pred ceEEE---------CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC
Confidence 12211 124578888865 89999999999999999998755544
No 189
>PRK09084 aspartate kinase III; Validated
Probab=90.81 E-value=11 Score=39.39 Aligned_cols=104 Identities=21% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+-..|+|.+. +.+|+++++...|++++++|.. |.+ + + ..=.|.+..... . ......+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~s-s--e-~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITT-S--E-VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eec-c--C-cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence 35667888765 6899999999999999999998 654 2 2 122355542211 0 01112232333333432
Q ss_pred CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCc
Q 044730 324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGI 367 (419)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl 367 (419)
..++.+.+ +...|.+.|. ++||+.+++..+|.+.++
T Consensus 375 ~~~i~~~~--------~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 LCRVEVEE--------GLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CCeEEEEC--------CeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 22232221 2457888887 789999999999987543
No 190
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.46 E-value=1.4 Score=41.11 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEec
Q 044730 106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITD 158 (419)
Q Consensus 106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~ 158 (419)
.++...+-+.-.||||....|+..|.++++||-..++.... +|.++-++.+..
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 34455677778999999999999999999999999998754 456765555543
No 191
>PRK11899 prephenate dehydratase; Provisional
Probab=90.34 E-value=1.8 Score=42.14 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=41.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK 303 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~ 303 (419)
.|.+-+..+|+||.|+++..+|+++|+|+.. |.++...+. ..=+|+++.+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence 4666666689999999999999999999988 777654443 3445788877753
No 192
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=90.29 E-value=1.5 Score=38.97 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=51.2
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG 181 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~ 181 (419)
.-.+.+.-.|.||-|+++++.|+..|+||.+-.+--+.+....=+-.|+.. ++..++++.++|.....
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence 446788889999999999999999999999988876665543333333331 45678899999888543
No 193
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=90.22 E-value=0.18 Score=39.84 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=27.4
Q ss_pred EEEEEecC-CccHHHHHHHHHHhCCceEEE
Q 044730 251 LLQIKCAD-QKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 251 ~v~V~~~D-rpGLl~~i~~~L~~~~~~I~~ 279 (419)
+|+|.|+| +.|++++++.+|+++|+||.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 47999999 999999999999999999987
No 194
>PRK11898 prephenate dehydratase; Provisional
Probab=89.43 E-value=1.7 Score=42.51 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=45.5
Q ss_pred eEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 342 NPVELCGK-GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 342 t~lev~~~-DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
+.+-+.-. ++||-|+++-..|+++|+|+.+.+..- ...+. -.+.|||+ -+|.. .++.. +++.+.|++
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP--~~~~~-~~y~F~vd-~eg~~-~~~~~-~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRP--TKTGL-GTYFFFID-VEGHI-DDVLV-AEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEeccc--CCCCC-ccEEEEEE-EEccC-CCHHH-HHHHHHHHH
Confidence 44555554 469999999999999999999888765 33343 46999995 45543 44333 444455544
No 195
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=89.41 E-value=1.4 Score=48.08 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.+.|.|.+.||+|||++|+.+|+..+.||.+....+. ++..+.+.+-.. +.+..-+.+|-.+|++
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~----v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIE----VKNLNHLGRVLARLKQ 691 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEE----ECcHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999888874 454444432211 1234445556555554
No 196
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.03 E-value=0.85 Score=46.97 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.1
Q ss_pred cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730 340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL 391 (419)
Q Consensus 340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v 391 (419)
....|-+.-.|+||.+..|+..|+++|+||...+..+ .|+. +.-+|-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~--A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEI--GYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCE--EEEEEEe
Confidence 4567888999999999999999999999999999988 6665 6554433
No 197
>PLN02317 arogenate dehydratase
Probab=88.83 E-value=1.8 Score=43.98 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCce-------------eEEEEEEEecCCCC
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQ-------------WEVYRFLLDESLEF 397 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~-------------~~~d~F~v~d~~g~ 397 (419)
-|.|-+.-.|+||.|+++-.+|+.+|||+.+.+..- ...+. .-.+.|||+ -+|.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP--~~~~~~~~~~~~~~~~~~~~eY~FyVD-~eg~ 349 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP--QRKRPLRVVDDSNSGTAKYFDYLFYVD-FEAS 349 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee--cCCCCccccccccccccccccEEEEEE-EEcC
Confidence 467777778999999999999999999999888755 22221 146899995 4453
No 198
>PRK08198 threonine dehydratase; Provisional
Probab=88.72 E-value=7.9 Score=39.66 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=45.3
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec----CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT----PDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.....+.+.-+|+||-|+++...++++|.||.+-..... +.+.+--.+.+.. .+++..+.|.+.|++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-----RGPEHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 346689999999999999999999999999998776421 2333322222221 135556666666654
No 199
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.59 E-value=4.1 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=37.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCc-hhHHHHHHHHHHH
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHT-KQRREETCEHMIA 178 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~-~~r~~~i~~~L~~ 178 (419)
.+.+.-+||||=|++++.+|+ +.||....-.....+..--.+.+.. .+ ++-.+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-----ANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence 467788999999999999999 7777754443322233222232322 13 4556666666655
No 200
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.29 E-value=1 Score=46.44 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=42.6
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~ 158 (419)
....|.+.-+|+||.++.|+.+|+++|+||..-++++ .+++++.+|-+..
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCC
Confidence 5678888999999999999999999999999999987 5677876665543
No 201
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=88.11 E-value=2.1 Score=44.20 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=49.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT 415 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~ 415 (419)
.|.|-++..|+||-|++|-.+|+++|||+.+.+..- ...+. -.+.|||+ -+|.. + ...+++.+.|++.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRP--sk~~~-~eY~FFVD-~eg~~--~-~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRP--SKTHP-GEYEFFVE-FDEAS--D-RKLEGVIEHLRQK 83 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEeccc--CCCCC-ccEEEEEE-EecCc--c-HHHHHHHHHHHHh
Confidence 366777779999999999999999999999888765 33343 46889996 44543 2 2335566666553
No 202
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=87.89 E-value=3 Score=40.56 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=42.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK 303 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~ 303 (419)
..|.+.+..+|+||-|+++...|+.+|+|... |.++..... ..-+|+++.+|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCeeEEEEEEEecCc
Confidence 46778888889999999999999999999987 776544434 4445788876664
No 203
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=87.59 E-value=3.4 Score=45.20 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=36.8
Q ss_pred EEEEeCC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 239 ITVDNLL-SPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 239 V~v~~~~-~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
|.++... ......|.|.+.||+|||.+|+.+|+..+.||......+
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~ 662 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS 662 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc
Confidence 4454442 345568999999999999999999999999999955543
No 204
>PRK09181 aspartate kinase; Validated
Probab=87.22 E-value=43 Score=35.30 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=28.9
Q ss_pred CeEEEEEEecC--CccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 248 AHTLLQIKCAD--QKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 248 ~~t~v~V~~~D--rpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
+...|.+.|.. +||+.+++..+|++.|+||.. +.+
T Consensus 401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~--i~q 437 (475)
T PRK09181 401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLA--LHQ 437 (475)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEE--EEe
Confidence 34567777754 899999999999999999987 554
No 205
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.03 E-value=8 Score=28.01 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=32.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
.+.+.|. +.||++++|.++|.+.|+++.....++ .. ..-.|.|..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~----s~--~~is~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS----SE--RNISAVIDE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC----cc--cEEEEEEeH
Confidence 4566664 789999999999999999998765433 11 445577754
No 206
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.89 E-value=1.1 Score=42.45 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=46.1
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEE--EEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLD--LFFITDGLELLHTKQRREETCEHMIAVL 180 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d--~f~V~~~~~~~~~~~r~~~i~~~L~~vL 180 (419)
....|.+.-.|.||.+++|+++|+..|.||.+--+--+ ....+. ++.++.. ..-+++.+++|+...
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t-evk~LsrmTIVl~Gt------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT-EVKALSRMTIVLQGT------DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech-hhhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence 35578888999999999999999999999998777542 233333 4444432 233666666666533
No 207
>PRK06349 homoserine dehydrogenase; Provisional
Probab=86.64 E-value=3 Score=43.18 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=40.4
Q ss_pred CcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 339 LVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 339 ~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
...+.|.+...|+||.|++|+.+|.++|++|.+..-.. ..+. ....+++++.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~--~~~~--~~~ivivT~~ 397 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG--AGGE--GAEIVIVTHE 397 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc--CCCC--ceeEEEEEEe
Confidence 34578999999999999999999999999999876543 2222 5666777753
No 208
>PRK09034 aspartate kinase; Reviewed
Probab=86.48 E-value=45 Score=34.83 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=27.5
Q ss_pred CeeEEEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 108 SLYLLKYCC---VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 108 ~~~~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
+.+.|++.+ .+++|.+++|...|+++|+||.--
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 346777775 578999999999999999999864
No 209
>PLN02551 aspartokinase
Probab=86.42 E-value=49 Score=35.25 Aligned_cols=112 Identities=12% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 107 PSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 107 ~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+.+.|+|.+. +.+|.+++|...|+++|+||.-- .| ....+ .|.+.... -...+.+++.|..++..-
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-Se~sI--s~~v~~~~-----~~~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-SEVSI--SLTLDPSK-----LWSRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec-cCCEE--EEEEehhH-----hhhhhhHHHHHHHHHHHh
Confidence 44578888765 68999999999999999999854 33 22211 34443311 011223333333322110
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec--CCcc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA--DQKG 261 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~--DrpG 261 (419)
. . ...|.+. .+...|.|.|. .+||
T Consensus 434 ------~-----------------~---------------------------~~~V~v~----~~vAiISvVG~~~~~~g 459 (521)
T PLN02551 434 ------E-----------------K---------------------------IAVVNLL----QGRSIISLIGNVQRSSL 459 (521)
T ss_pred ------h-----------------c---------------------------CCeEEEe----CCEEEEEEEccCCCCcc
Confidence 0 0 0012222 23556777754 6899
Q ss_pred HHHHHHHHHHhCCceEEEEEEEE
Q 044730 262 LFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t 284 (419)
+++++..+|++.|+||.. |+.
T Consensus 460 vaariF~aLa~~gInV~m--Isq 480 (521)
T PLN02551 460 ILEKVFRVLRTNGVNVQM--ISQ 480 (521)
T ss_pred HHHHHHHHHHHCCCCeEE--EEe
Confidence 999999999999999988 653
No 210
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.20 E-value=43 Score=37.82 Aligned_cols=112 Identities=8% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcc
Q 044730 106 KPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGE 182 (419)
Q Consensus 106 ~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~ 182 (419)
..+...|++.|. .+||+++++...|+++|+||.-....+ ....+ .|.|.. +..++..+.|.+.+..
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sI-sf~V~~--------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSI-SFCVPQ--------SDAAKAKRALEEEFAL 380 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceE-EEEEeH--------HHHHHHHHHHHHHHHH
Confidence 345678899875 689999999999999999997543333 22221 344432 2233333333332221
Q ss_pred cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CC
Q 044730 183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQ 259 (419)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---Dr 259 (419)
. +. . . ....|.+. .+...|.|.|. ++
T Consensus 381 e-----l~--------------------~------------------~----~~~~i~~~----~~valIsvvG~gm~~~ 409 (819)
T PRK09436 381 E-----LK--------------------E------------------G----LLEPLEVE----ENLAIISVVGDGMRTH 409 (819)
T ss_pred H-----hc--------------------c------------------C----CcceEEEe----CCEEEEEEEccCcccC
Confidence 1 00 0 0 00112222 24567888885 78
Q ss_pred ccHHHHHHHHHHhCCceEEE
Q 044730 260 KGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 260 pGLl~~i~~~L~~~~~~I~~ 279 (419)
||++.++..+|.+.|+||..
T Consensus 410 ~gv~arif~aL~~~~InI~~ 429 (819)
T PRK09436 410 PGIAAKFFSALGRANINIVA 429 (819)
T ss_pred cCHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999987
No 211
>PRK06545 prephenate dehydrogenase; Validated
Probab=85.92 E-value=2.5 Score=42.60 Aligned_cols=38 Identities=24% Similarity=0.090 Sum_probs=35.3
Q ss_pred CcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 339 LVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 339 ~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
+.++.|.|.-+||||-|++|+..|.+.|+||.+.+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 45789999999999999999999999999999999965
No 212
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=85.84 E-value=24 Score=40.10 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+-+.|+|.+ .+.+|+++++...|++++++|.. |.+ + + ..=+|.+.... .......++.+.+.|. .
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~s-s--e-~sis~~i~~~~-~~~~~~~~~~l~~~l~----~ 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISS-S--E-TNVTVSLDPSE-NLVNTDVLAALSADLS----Q 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEc-C--C-CEEEEEEcccc-ccchHHHHHHHHHHHh----h
Confidence 3456788864 36899999999999999999987 654 2 2 11124443221 1111123333333333 2
Q ss_pred CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 044730 324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I 369 (419)
..++.+.. .-..|.|.|. .+||+++++..+|.+.|+++
T Consensus 389 ~~~i~~~~--------~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 ICRVKIIV--------PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred cCcEEEeC--------CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 11122211 2457888886 78999999999999987655
No 213
>PRK06382 threonine dehydratase; Provisional
Probab=85.34 E-value=4.6 Score=41.51 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecc-cCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHS-TSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~-~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.++|.-+||||.|.+|+..|.++|+||.+....+.. ..+...+.-+|-|... + ++..++|.+.|++
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~ 398 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALRE 398 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHH
Confidence 45899999999999999999999999999887764110 0112124455555432 1 3343566666654
No 214
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.80 E-value=5.3 Score=29.15 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=32.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
.|.+.|. ++||+++++..+|.+.|+++....-++. . ..-.|.+.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s----~--~~isf~v~~ 50 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS----E--INISCVIDE 50 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc----c--ceEEEEEeH
Confidence 4556665 7899999999999999999987655441 1 444566654
No 215
>PRK08526 threonine dehydratase; Provisional
Probab=84.64 E-value=11 Score=38.66 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 63 VLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 63 vf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
++.++. || +|...+.+.++..+ -.......+.+.-+||||-|++++..+.+.+.||.+-.-
T Consensus 299 v~ilsG--Gn--id~~~~~~i~~~~l---------------~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 299 GVVLSG--GN--IDVQMLNIIIEKGL---------------IKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred EEEECC--CC--CCHHHHHHHHHHHH---------------HhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 444444 65 68888877776544 122346788999999999999999999999999998766
Q ss_pred EecCCC---eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 143 MTTPDG---RVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 143 ~T~~~g---~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
....+. .-+.+...... .+++..++|.+.|++
T Consensus 360 ~r~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 360 DRFSTKLDYGDAMISITLET----KGKEHQEEIRKILTE 394 (403)
T ss_pred EeccCCCCCccEEEEEEEEe----CCHHHHHHHHHHHHH
Confidence 442222 12222222221 135566666666654
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=84.03 E-value=7.9 Score=39.65 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=46.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccC-CceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTS-HRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~G-e~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~~ 419 (419)
...+.|.-+||||-|.++...+.+.|.||..........+ ... ...+...-+.. +++..++|.++|++ +||
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~-~~~v~v~ie~~-----~~~~~~~l~~~L~~--~G~ 398 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLG-EVEVELTLETR-----GPEHIEEILDALRD--AGY 398 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCc-eEEEEEEEEeC-----CHHHHHHHHHHHHH--CCC
Confidence 4579999999999999999999999999998776542111 111 22233222221 34555777777766 454
No 217
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=83.93 E-value=3.5 Score=42.74 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=47.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+.|=++..|+||-|+++-+.|+++|||+.+.+... ...+.|..+.|||. -+|.. ...+++.+.|+.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRP--sk~~~~e~Y~FfVD-~Eg~~----~~l~~aL~~Lk~ 97 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRD--SKDGTSKTMDVLVD-VELFH----YGLQEAMDLLKS 97 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCc--CCCCCCccEEEEEE-EEcCH----HHHHHHHHHHHH
Confidence 466777779999999999999999999999888765 44444444889995 33433 223444455443
No 218
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.83 E-value=2.9 Score=44.58 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL 391 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v 391 (419)
.+.+=+.-.|+||.+..|+..|.++++||....++....|.. +.-+|-+
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al~~i~~ 500 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--ALMVLSV 500 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EEEEEEC
Confidence 344445568999999999999999999999999988554455 5544444
No 219
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=83.69 E-value=8.9 Score=29.89 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=52.6
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG 181 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~ 181 (419)
.+.+.+...++|+.|-++-++....|+.|......+-+|+.-+.+=.+.+.+.+ .+.+..+|+++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~------~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRS------VDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCC------hHHHHHHHHHHcc
Confidence 578899999999999999999999999999999888766665555444443333 5668888888554
No 220
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.51 E-value=5.5 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=25.8
Q ss_pred EEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEE
Q 044730 112 LKYCC-VDRKGLLHDATKVLTELEFTIQRVKVM 143 (419)
Q Consensus 112 i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~ 143 (419)
|++.+ ++.+|.++++.+.|.++|++|......
T Consensus 3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 44443 788999999999999999999765443
No 221
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.13 E-value=11 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.3
Q ss_pred EEEEEE-eCCCChHHHHHHHHHHcCCeEEEEE
Q 044730 111 LLKYCC-VDRKGLLHDATKVLTELEFTIQRVK 141 (419)
Q Consensus 111 ~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~ 141 (419)
.|++.+ +|+||.+++++..|++.|+||....
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 345544 6999999999999999999998543
No 222
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=82.87 E-value=61 Score=36.58 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=66.1
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+-+.|+|.+. +.||.++++..+|++++++|.. |.+ +..+. .-.|.+.. ...+.+.+.|+.. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~--i~~-~~s~~-sis~~i~~--------~~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLA--VGV-HPDRQ-LLQLAYTS--------EVADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEE--EEe-cCCCc-EEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence 35567788765 7889999999999999999987 543 22221 22244431 1223333333332 11
Q ss_pred CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044730 324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFS 371 (419)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~ 371 (419)
..++.+.. ....|.+.|. .+||+..++..+|.+.++++.+
T Consensus 382 ~~~i~v~~--------~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 382 PGELKLRE--------GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred CCcEEEeC--------CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 21222211 2557888886 5899999999999999999854
No 223
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=82.67 E-value=8.1 Score=33.15 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
..-+.+.+.-.||.|.|+++-.++++.+|||+.-+...--+|++--.+.+... +- ....+.|-+.|++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm---~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SM---EKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hh---hhhHHHHHHHHhc
Confidence 44577888899999999999999999999999988877558887555555432 11 2234455555554
No 224
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=82.52 E-value=6.5 Score=28.86 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=24.5
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIF 370 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~ 370 (419)
.|.+.|. +.||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666665 789999999999999999996
No 225
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=82.39 E-value=6.6 Score=40.14 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=40.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK 303 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~ 303 (419)
.|.+-+..+|+||.|+++...|+..|+|+.. |.+....+. ..=+|++..+|..
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQANL 350 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCCC
Confidence 4555566689999999999999999999988 777644444 4445788877753
No 226
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=80.73 E-value=11 Score=38.31 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=44.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccC-CceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTS-HRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~G-e~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
..+.|.-+||||.|++++..++++|.||.+..-...... ..+.+.-.|-+... +++..++|.+.|++
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR------GKEHLDEILKILRD 373 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 378999999999999999999999999998755421011 11223344444322 23444677777765
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.71 E-value=3.6 Score=43.85 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL 391 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v 391 (419)
++.+=+.-.||||.+..|+..|.++++||...++.....|.. +.-++-+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~--al~~i~~ 499 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGE--ALMLLSL 499 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCe--EEEEEEc
Confidence 334455558999999999999999999999999998555555 6555544
No 228
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.07 E-value=5.1 Score=42.67 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=35.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeE
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNM 292 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~ 292 (419)
.+..+.+..+|+||.+..++..|.++++||...++.....|+.+.
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al 495 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEAL 495 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEE
Confidence 344556677999999999999999999999998877633444444
No 229
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.00 E-value=16 Score=28.56 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=35.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
++.|.-+||||=|.+++.+|+ +.||....-.. ...+...-.+.+...+. ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 577888999999999999999 45555422322 11122222233442221 3455666666654
No 230
>PRK08639 threonine dehydratase; Validated
Probab=79.88 E-value=18 Score=37.31 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEE
Q 044730 75 VDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLF 154 (419)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f 154 (419)
++.+.+.+.++..+ ........+.+.-|||||-|.+++..+...+.||..-+-....+.....++
T Consensus 317 ~d~~~~~~~~~~~l---------------~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~ 381 (420)
T PRK08639 317 NDIERMPEIKERSL---------------IYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVL 381 (420)
T ss_pred CCHHHHHHHHHHHH---------------HhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEE
Confidence 56666766665544 122346789999999999999999977777779998754321211111222
Q ss_pred EEecCCCCCCchhHHHHHHHHHHH
Q 044730 155 FITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 155 ~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
...+ ..+++..++|.+.|++
T Consensus 382 v~iE----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 382 VGIE----LKDAEDYDGLIERMEA 401 (420)
T ss_pred EEEE----eCCHHHHHHHHHHHHH
Confidence 2111 1235566777777765
No 231
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.51 E-value=17 Score=27.79 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=24.3
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 256 CADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 256 ~~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
.+++||++++|..+|+++|++|.. |.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDm--I~~ 37 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDL--ITT 37 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEE--Eee
Confidence 478899999999999999999998 664
No 232
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=78.93 E-value=13 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 350 GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 350 DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
++||+.++|-.+|.++|+++... +| ++ ..-.|++...
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i--~t---~~---~~is~~v~~~ 48 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLI--PT---SE---NSVTLYLDDS 48 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEE--ec---CC---CEEEEEEehh
Confidence 78999999999999999999976 33 12 4567888753
No 233
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=78.76 E-value=11 Score=26.65 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=25.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEI 374 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I 374 (419)
.|++.+. +++|+++++...|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999976543
No 234
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=77.92 E-value=91 Score=32.31 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=27.4
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEE
Q 044730 248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
+.+.|++.+ .++||+++++..+|++.|+||..
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~ 411 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEM 411 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEE
Confidence 455777765 47899999999999999999987
No 235
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=77.76 E-value=9.5 Score=39.66 Aligned_cols=54 Identities=9% Similarity=-0.015 Sum_probs=39.7
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEe--EEEEecCCC
Q 044730 247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMD--LFIRQTDGK 302 (419)
Q Consensus 247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d--~F~v~~~g~ 302 (419)
...+.|.+..+|+||-|+++...|+.+|+|+.+ |.+........+ .|+|.-+|.
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEEEEEcC
Confidence 344556666799999999999999999999999 776543333333 577775554
No 236
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.63 E-value=13 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=32.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
.+.+.|. ++||+++++...|.+.|+++.....++. . ..-.|.+..
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s----~--~~isf~v~~ 50 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSS----E--ISIMIGVHN 50 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc----c--cEEEEEEeH
Confidence 4566664 7899999999999999999987755431 1 334577753
No 237
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=77.42 E-value=15 Score=32.75 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH 323 (419)
Q Consensus 251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~ 323 (419)
.+.+.-.|.||.|.++++.|+..|+||.+-.+.. +......-+=++ ..| ++...+++.+.|...+..
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTiv-v~g----~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIV-VSG----DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEE-EcC----CcchHHHHHHHHHhhccc
Confidence 5788889999999999999999999999965554 221212211122 222 234567888888776643
No 238
>PRK06349 homoserine dehydrogenase; Provisional
Probab=76.53 E-value=11 Score=38.94 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=40.1
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~ 158 (419)
..+.|.+...|+||.|++|++.|.+++.||.+...... ++....++.+++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEE
Confidence 35789999999999999999999999999998766543 334556677775
No 239
>PRK06545 prephenate dehydrogenase; Validated
Probab=76.47 E-value=4.5 Score=40.81 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC
Q 044730 104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP 146 (419)
Q Consensus 104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~ 146 (419)
...+..+.|.|.-+||||-+++|+..|...|+||.+-+|.-..
T Consensus 285 ~~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~ 327 (359)
T PRK06545 285 GAIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR 327 (359)
T ss_pred CCCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc
Confidence 3446688999999999999999999999999999999996543
No 240
>PRK14646 hypothetical protein; Provisional
Probab=75.66 E-value=39 Score=29.90 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCc
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLV 340 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~ 340 (419)
.+...+..++..+|+.+.+..+.. ..+..+.-+|+=..+|..++ =+..+.+.+.+.+.|... . ....
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~-~~~~~~LrV~IDk~~g~gVt-ldDC~~vSr~is~~LD~~-------D----~i~~ 74 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQT-NQNPIVIKIIIKKTNGDDIS-LDDCALFNTPASEEIENS-------N----LLNC 74 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEe-CCCCeEEEEEEECCCCCCcc-HHHHHHHHHHHHHHhCcC-------C----CCCC
Confidence 466778889999999999988875 23455565555334444443 246788888888888532 0 1224
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceE
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I 369 (419)
++.+||++++=-.-|..--..-+-.|-.+
T Consensus 75 ~Y~LEVSSPGldRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 75 SYVLEISSQGVSDELTSERDFKTFKGFPV 103 (155)
T ss_pred CeEEEEcCCCCCCcCCCHHHHHHhCCCEE
Confidence 78999998855555666666666666444
No 241
>PRK14634 hypothetical protein; Provisional
Probab=75.45 E-value=39 Score=29.92 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCC
Q 044730 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELL 339 (419)
Q Consensus 260 pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~ 339 (419)
+.+-.-+..++..+|+.+.+..+.. ..+..+.-+|+=..+|..++- +.++.+.+.+.+.|... . ...
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~-~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~-------d----~i~ 73 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLT-HLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEAS-------Q----LLT 73 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEe-CCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhccc-------c----cCC
Confidence 4566677788999999999988775 334556655553366644443 46788888888888642 0 112
Q ss_pred cceEEEEEeCCCcchHHHHHHHHHhCCc
Q 044730 340 VANPVELCGKGRPRVFYDVTLALKALGI 367 (419)
Q Consensus 340 ~~t~lev~~~DRpGLL~~It~~L~~~gl 367 (419)
..+.|||++++=-.-|..-...-+-.|=
T Consensus 74 ~~Y~LEVSSPGldRpL~~~~~f~r~~G~ 101 (155)
T PRK14634 74 EAYVLEISSPGIGDQLSSDRDFQTFRGF 101 (155)
T ss_pred CCeEEEEeCCCCCCcCCCHHHHHHhCCC
Confidence 3678999988433334444444444453
No 242
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=75.40 E-value=26 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=24.5
Q ss_pred EEEEEe---cCCccHHHHHHHHHHhCCceEEE
Q 044730 251 LLQIKC---ADQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 251 ~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
.|++.+ .+.||+++++..+|++.|+++..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 455543 57899999999999999999977
No 243
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=74.70 E-value=27 Score=26.44 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=38.4
Q ss_pred eEEEEEE---eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 110 YLLKYCC---VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 110 ~~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
+.|++.| .+.+|+++++..+|++.|++|..- .+ .+... .|.+.... ...+...+..+.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~-s~~~i--s~~v~~~~-~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--ST-SEVSV--SLTLDPTK-NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--Ec-CCcEE--EEEEEchh-hccchHHHHHHHHHHHh
Confidence 4567754 578999999999999999999643 23 33322 34444321 11112355666666655
No 244
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.57 E-value=29 Score=24.89 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+.+.|. ++||+++++.+.|.+.|+++.....++. . ..-.|.+... ...+..+.|.+++
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s----~--~~isf~i~~~---------~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS----E--YNISFVVAED---------DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc----c--ceEEEEEeHH---------HHHHHHHHHHHHh
Confidence 4555564 7899999999999999999987655441 1 3345777542 2244555666554
No 245
>PRK11898 prephenate dehydratase; Provisional
Probab=74.55 E-value=20 Score=35.00 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=43.2
Q ss_pred eEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 249 HTLLQIKCA-DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 249 ~t~v~V~~~-DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
.+.+.+..+ ++||-|+++...|+++|+|+.+ |.++...+. ..-.|++.-+|.. .++ ..+++...|++
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~~y~F~vd~eg~~-~~~-~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLGTYFFFIDVEGHI-DDV-LVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCccEEEEEEEEccC-CCH-HHHHHHHHHHH
Confidence 344555554 4699999999999999999998 776543233 3334778766653 333 34444444443
No 246
>PLN02317 arogenate dehydratase
Probab=74.35 E-value=17 Score=37.03 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=38.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce---------------eEeEEEEecCCCC
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR---------------NMDLFIRQTDGKK 303 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~---------------~~d~F~v~~~g~~ 303 (419)
.|.|.+.-+|+||-|+++..+|+.+|+|+.+ |.++..... ..=.|+++-+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtk--IESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTK--IESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEE--EEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence 3556666689999999999999999999998 766533222 2335788866643
No 247
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=73.92 E-value=32 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.098 Sum_probs=25.3
Q ss_pred EEEEEEe---CCCChHHHHHHHHHHcCCeEE
Q 044730 111 LLKYCCV---DRKGLLHDATKVLTELEFTIQ 138 (419)
Q Consensus 111 ~i~v~~~---DrpGLl~~i~~vL~~~g~nI~ 138 (419)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5778885 889999999999999999996
No 248
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=73.78 E-value=16 Score=25.94 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=30.2
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 344 VELCG---KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 344 lev~~---~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
+.+.+ .+.||++.++...|.+.|+++.....+ . ..-.|.|.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s------~--~~is~~v~~ 47 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS------E--IKISCLIDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc------C--ceEEEEEeH
Confidence 44544 367999999999999999999766421 1 334577764
No 249
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.69 E-value=35 Score=26.07 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=29.9
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 348 GKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 348 ~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
..++||++++|..+|.++|++|.... +. + ..-.|-|...
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~s---~---~~iSftv~~~ 49 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--TS---E---ISVALTLDNT 49 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--ec---C---CEEEEEEecc
Confidence 35889999999999999999998763 31 2 4566777643
No 250
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.12 E-value=39 Score=25.78 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=36.2
Q ss_pred eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 117 VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 117 ~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
++.||+++++.++|+++|+||.-- .+ +...+ .|.|...... .+.++++++.+.|+.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~~~i--sftv~~~~~~-~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SETNV--TVSLDPDPNG-LDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-CCCEE--EEEEeCcccc-cchHHHHHHHHHHHh
Confidence 578999999999999999999854 23 33222 4555443211 123466677777766
No 251
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.96 E-value=17 Score=25.77 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=30.2
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 344 VELCG---KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 344 lev~~---~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
|.+.+ .+.||+++++...|.+.++++.... +. . ..-.|.|.+
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~--~s----~--~~is~~v~~ 47 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TS----E--IKISCLVDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE--cc----C--CeEEEEEeH
Confidence 45554 3679999999999999999997654 31 1 334577764
No 252
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=72.90 E-value=5.9 Score=35.09 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=27.7
Q ss_pred eeEEEEEE--eCCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 109 LYLLKYCC--VDRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 109 ~~~i~v~~--~DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
.-.|+++. .+.||.++.+++.++++||+|..+-.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 33555555 67899999999999999999998744
No 253
>PRK08841 aspartate kinase; Validated
Probab=72.81 E-value=1.1e+02 Score=31.40 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=58.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCee
Q 044730 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRV 327 (419)
Q Consensus 248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v 327 (419)
+.+.|++.+ +.+.++...|+++|+++.. +.+ ..... .|.+. ....+.+ +..+... +
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~~--~~~~~--~~~v~--------~~~~~~~----~~~~~~~--i 312 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWN--VIE--EADRA--QIVIK--------QDACAKL----KLVFDDK--I 312 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEE--EEe--cCCcE--EEEEC--------HHHHHHH----HHhCccc--E
Confidence 455667644 3578999999999999987 543 11111 24443 1122222 2222111 1
Q ss_pred eeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEE
Q 044730 328 MVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFS 371 (419)
Q Consensus 328 ~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~ 371 (419)
.+. .....+.+.|...||+.+++.++|.+.|++|..
T Consensus 313 ~~~--------~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 313 RNS--------ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred EEe--------CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 111 125689999999999999999999999999964
No 254
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=72.46 E-value=44 Score=40.22 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=64.5
Q ss_pred cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecc-cCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcC
Q 044730 340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHS-TSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG 418 (419)
Q Consensus 340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~-~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~ 418 (419)
....+.++...+|..|++|.-+|..+|+.|....-..-. .+.+..-.+.|++....+..++..+..+.+.+++.+...|
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999887543311 2345567889999988888777777778888999888777
Q ss_pred C
Q 044730 419 W 419 (419)
Q Consensus 419 ~ 419 (419)
|
T Consensus 568 ~ 568 (1528)
T PF05088_consen 568 R 568 (1528)
T ss_pred C
Confidence 5
No 255
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.10 E-value=34 Score=24.66 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=26.7
Q ss_pred EEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 111 LLKYCCV---DRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 111 ~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
.|.+.|. ++||.++++.+.|++.|+||.--..
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 5677775 7899999999999999999975533
No 256
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=72.03 E-value=22 Score=36.85 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=44.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecC-ceeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKG-YRNMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g-~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
.+.|.+..+|+||-|+++...|+.+|+|+.+ |.++... ....=.|+|.-+|.. + ...+.+.+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCccEEEEEEEecCc--c-HHHHHHHHHHHH
Confidence 4556666699999999999999999999999 7765322 222334778766653 2 344555555544
No 257
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=71.95 E-value=6.2 Score=37.52 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
...+.+.-.|-||+|++|+-+|+..|.||.+.-+.-
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 458999999999999999999999999999998865
No 258
>PRK14645 hypothetical protein; Provisional
Probab=71.63 E-value=53 Score=29.04 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCC
Q 044730 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELL 339 (419)
Q Consensus 260 pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~ 339 (419)
..+-..+..++..+|+.+.+..+.. ..+..+.-+|+=..+|..++- +..+.+.+.+.+.|... . ...
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~-~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~-------d----~i~ 75 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQR-SGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRL-------D----PIE 75 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEe-CCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccc-------c----cCC
Confidence 3466778889999999999988775 233455554443344444443 46888888888888642 0 112
Q ss_pred cceEEEEEeCCCcchHHHHHHHHHhCC
Q 044730 340 VANPVELCGKGRPRVFYDVTLALKALG 366 (419)
Q Consensus 340 ~~t~lev~~~DRpGLL~~It~~L~~~g 366 (419)
..+.|||++++=-.-|...-..-+-.|
T Consensus 76 ~~Y~LEVSSPGldRpL~~~~df~r~~G 102 (154)
T PRK14645 76 GEYRLEVESPGPKRPLFTARHFERFAG 102 (154)
T ss_pred CceEEEEeCCCCCCCCCCHHHHHHhCC
Confidence 367899998854444555555555556
No 259
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=71.40 E-value=13 Score=32.91 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=30.8
Q ss_pred EEEEEe--cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEE
Q 044730 251 LLQIKC--ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF 295 (419)
Q Consensus 251 ~v~V~~--~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F 295 (419)
+|+++. .+.||+++.+++.++++|++|.. +.. .+.+...+.+
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irq--i~~-~dpe~~~e~~ 138 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQ--IIS-EDPELQEEPK 138 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEE--Eec-CCcccCCCce
Confidence 555554 67899999999999999999999 554 2333444444
No 260
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=71.36 E-value=35 Score=24.47 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=26.0
Q ss_pred EEEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCC---VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|.+.| ++.||+++++...|++.|++|.--
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 577777 488999999999999999999754
No 261
>PRK14636 hypothetical protein; Provisional
Probab=70.08 E-value=50 Score=29.89 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCC
Q 044730 258 DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTE 337 (419)
Q Consensus 258 DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~ 337 (419)
|.+-+..-+..++..+|+.+....+.. ..+..+.-+|+=.++|..++ =..++.+.+.|...|... . .
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~-~~~~~~lrV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~-------d----~ 69 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFG-GKSDPTLQIMAERPDTRQLV-IEDCAALSRRLSDVFDEL-------D----P 69 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEc-CCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhccC-------c----C
Confidence 344566778889999999999988765 23355555555334433343 346888888888888632 0 0
Q ss_pred CCcceEEEEEeCCCcchHHHHHHHHHhCCc
Q 044730 338 LLVANPVELCGKGRPRVFYDVTLALKALGI 367 (419)
Q Consensus 338 ~~~~t~lev~~~DRpGLL~~It~~L~~~gl 367 (419)
....+.|||+++.=-.-|..--..-+-.|=
T Consensus 70 i~~~Y~LEVSSPGldRpL~~~~df~r~~G~ 99 (176)
T PRK14636 70 IEDAYRLEVSSPGIDRPLTRPKDFADWAGH 99 (176)
T ss_pred CCCCeEEEEeCCCCCCCCCCHHHHHHhCCC
Confidence 123678999988443344444444444443
No 262
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=69.84 E-value=9.8 Score=40.54 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=38.7
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEe
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFIT 157 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~ 157 (419)
++...+-+.-.|+||....|+.+|.++++||-..++.... +|.++-++.+.
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 4445556667999999999999999999999988887543 35665555543
No 263
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=69.46 E-value=1.5e+02 Score=30.99 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCeeEEEEEEe-C--CCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730 107 PSLYLLKYCCV-D--RKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 107 ~~~~~i~v~~~-D--rpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+.+.|++.+. + .+|.+++|...|+++|+||.---....+++ -.|.+... ...+....|.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~---i~~~v~~~--------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS---ISFTVPES--------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe---EEEEEchh--------hHHHHHHHHHHHHhhh
Confidence 55678888874 3 449999999999999999974322221222 24555431 1223333343322211
Q ss_pred ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEe---cCCc
Q 044730 184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKC---ADQK 260 (419)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~Drp 260 (419)
. . .+.++ .+...|.+.+ +..|
T Consensus 374 ~--------------------------------------------------~--~v~~~----~~~a~vsiVG~gm~~~~ 397 (447)
T COG0527 374 L--------------------------------------------------A--EVEVE----EGLALVSIVGAGMRSNP 397 (447)
T ss_pred c--------------------------------------------------c--eEEee----CCeeEEEEEccccccCc
Confidence 0 0 11111 1233566665 5788
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEE
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
|..+++..+|++.++||.. |.+
T Consensus 398 gvaa~~f~aL~~~~ini~~--iss 419 (447)
T COG0527 398 GVAARIFQALAEENINIIM--ISS 419 (447)
T ss_pred CHHHHHHHHHHhCCCcEEE--EEc
Confidence 9999999999999999998 544
No 264
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.55 E-value=34 Score=26.11 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=36.3
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 257 ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 257 ~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
++.||+++++..+|+++|++|.. |.+ +. ..=.|.+......+.+ +..+.|.+.|+.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDm--I~~---s~-~~isftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDL--VST---SE-TNVTVSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EEe---CC-CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence 57899999999999999999998 664 22 2223555422211222 256666666655
No 265
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=67.29 E-value=19 Score=26.75 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=26.2
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGK--GRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.|.+.|. -+||++.++.++|.+.|+++.....++
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 368999999999999999998755544
No 266
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=67.26 E-value=67 Score=33.05 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=42.6
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
.....+.+.-|||||=|.+++..+...+.||..-+-.-..+ +.. .+.....- .+++..++|.+.|++
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~-~v~v~iE~----~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETG-PALIGIEL----NDKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeE-EEEEEEEe----CCHHHHHHHHHHHHH
Confidence 44678999999999999999997777888999655442111 222 22221111 135556677776665
No 267
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.05 E-value=19 Score=26.41 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIF 370 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~ 370 (419)
.|.+.|. ..||+++++.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4556665 679999999999998877663
No 268
>PRK14630 hypothetical protein; Provisional
Probab=66.94 E-value=76 Score=27.68 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=55.8
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCC
Q 044730 258 DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTE 337 (419)
Q Consensus 258 DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~ 337 (419)
|.-.+-..+..++..+|+.+.+..... ..+....-+|+=..+|-.+ +..+.+.+.+...|+.+.
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~-~~~~~~lrV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i------------ 69 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFR-NRNEGKIQIVLYKKDSFGV---DTLCDLHKMILLILEAVL------------ 69 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEe-cCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccC------------
Confidence 555667778889999999999988764 2344555444433555333 467788888877775321
Q ss_pred CCcceEEEEEeCCCcchHHHHHHHHHhCC
Q 044730 338 LLVANPVELCGKGRPRVFYDVTLALKALG 366 (419)
Q Consensus 338 ~~~~t~lev~~~DRpGLL~~It~~L~~~g 366 (419)
...+.+||++++=-.-|......-+-.|
T Consensus 70 -~~~Y~LEVSSPGldRpL~~~~df~r~~G 97 (143)
T PRK14630 70 -KYNFSLEISTPGINRKIKSDREFKIFEG 97 (143)
T ss_pred -CCCeEEEEeCCCCCCcCCCHHHHHHhCC
Confidence 1256788887733333444444444444
No 269
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=66.75 E-value=47 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=23.1
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEE
Q 044730 349 KGRPRVFYDVTLALKALGICIFSAEI 374 (419)
Q Consensus 349 ~DRpGLL~~It~~L~~~gl~I~~A~I 374 (419)
.|+||.++++.++|.+.|++|.....
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 58999999999999999999986543
No 270
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=66.66 E-value=39 Score=24.18 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 112 LKYCC---VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 112 i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
|+|.+ .+++|+.+++...|+++|+|+.--
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEEE
Confidence 44544 377899999999999999999854
No 271
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=66.32 E-value=13 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.7
Q ss_pred EEEEEeCC---CcchHHHHHHHHHhCCceEEEEEE
Q 044730 343 PVELCGKG---RPRVFYDVTLALKALGICIFSAEI 374 (419)
Q Consensus 343 ~lev~~~D---RpGLL~~It~~L~~~gl~I~~A~I 374 (419)
.+++.+.+ .||.++++..+|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 34555554 899999999999999999987544
No 272
>PRK08818 prephenate dehydrogenase; Provisional
Probab=65.59 E-value=14 Score=37.46 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=42.4
Q ss_pred CCeEEEEeCC-CCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEE
Q 044730 19 EPSVVTVNCP-DKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVV 67 (419)
Q Consensus 19 ~~t~v~v~~~-dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~ 67 (419)
..+.+.|+-+ |++|.|+++.++|.+.|++|++-.++-...|-|- |+|.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence 7888999997 9999999999999999999999999556668887 7774
No 273
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.36 E-value=24 Score=24.46 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=30.5
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730 348 GKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE 393 (419)
Q Consensus 348 ~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d 393 (419)
..++||++.++...|.++|++|....... .++. ...-.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~--~~~~-~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSV--SRGG-TTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcC--CCCC-cEEEEEEEeH
Confidence 36889999999999999999998765533 1121 1344577653
No 274
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=63.33 E-value=13 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.4
Q ss_pred EEEEEEeC---CCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCCVD---RKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~~D---rpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|++.+.+ .+|.++++..+|++++.+|..-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 46667655 8999999999999999999754
No 275
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=61.71 E-value=34 Score=26.73 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD 392 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~ 392 (419)
.+.+++.+.++|+.|.+|-++-+..|..+....-++-.-+++ +---|-|.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~--~nie~tV~ 52 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGN--ANIELTVD 52 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeeccccccccc--ceEEEEEc
Confidence 467999999999999999999999999999988887332455 55556553
No 276
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=60.83 E-value=11 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.+||.+.||.|+..+|...|...+|++...+|..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 4899999999999999999999999999999976
No 277
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.52 E-value=77 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=23.7
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 257 ADQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 257 ~DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
++.||+++++..+|+++|++|.. |.+
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDm--I~q 37 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDV--VAT 37 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EEe
Confidence 68899999999999999999998 664
No 278
>PRK12483 threonine dehydratase; Reviewed
Probab=60.46 E-value=2.4e+02 Score=30.15 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCCCeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeee--CCCeEEEEEEEEcCCCCCCCCH-HHHHHHHHhhCCCCc-
Q 044730 17 PTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFST--DGRWCYIVLWVVPDASSDKVDW-ESLKNRLLSVCPSIL- 92 (419)
Q Consensus 17 ~~~~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~ist--dg~w~~dvf~v~~~~g~~~~~~-~~~~~~~~~~~~~~~- 92 (419)
.+.-..+.|.-+||+|-|.+++++|.+. +|+..+-.- .+. -.++....-.+. ... +.+.+.|++..-...
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~--~~v~v~ie~~~~--~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE--AHLFVGVQTHPR--HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe--eEEEEEEEeCCh--hhhHHHHHHHHHHCCCCeEE
Confidence 5566788999999999999999999988 555444332 222 224444443332 233 455566665432211
Q ss_pred ----ccccc-CCCCCC---CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEE--EEEEecCCCeEEEEEEEecCCCC
Q 044730 93 ----VSYYF-NQPSSN---SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQR--VKVMTTPDGRVLDLFFITDGLEL 162 (419)
Q Consensus 93 ----~~~~~-~~~~v~---~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~--A~i~T~~~g~~~d~f~V~~~~~~ 162 (419)
+.+.. -+.-++ +....--.+.+.=|.|||=|.+.+..|.. ..||.. =|......++++--|.+
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~vgi~~------ 488 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVLAGLQV------ 488 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEEEEEee------
Confidence 00000 000122 12344567788889999999999999984 244443 22222122333333333
Q ss_pred CCchhHHHHHHHHHHH
Q 044730 163 LHTKQRREETCEHMIA 178 (419)
Q Consensus 163 ~~~~~r~~~i~~~L~~ 178 (419)
+ .+..+.+.+.|.+
T Consensus 489 -~-~~~~~~~~~~l~~ 502 (521)
T PRK12483 489 -P-EDERAALDAALAA 502 (521)
T ss_pred -C-hhHHHHHHHHHHH
Confidence 1 1334667777665
No 279
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=60.45 E-value=70 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.2
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.|++.+. +++|+++++.++|.+.++++....-++
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 4666443 789999999999999999998765544
No 280
>PRK14640 hypothetical protein; Provisional
Probab=60.43 E-value=1.2e+02 Score=26.69 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCc
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLV 340 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~ 340 (419)
.+...+..++..+|+.+.+-.+.. ..+....-+|+=..+| ++ =+..+.+.++|..+|... . ....
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~-~~~~~~lrV~ID~~~g--v~-lddC~~vSr~is~~LD~~-------d----~i~~ 71 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIR-AGKHSTLRVYIDGENG--VS-VENCAEVSHQVGAIMDVE-------D----PITE 71 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEe-cCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhccc-------c----cCCC
Confidence 345567788999999999987775 2334555444433555 33 346888889998888642 0 1123
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceE
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I 369 (419)
.+.+||++++=-.-|...-..-+-.|-.|
T Consensus 72 ~Y~LEVSSPGl~RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 72 EYYLEVSSPGLDRPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 67899998854445665666666566444
No 281
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=59.15 E-value=87 Score=35.35 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=71.4
Q ss_pred CCCCCeEEEEeCC---CCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCc
Q 044730 16 TPTEPSVVTVNCP---DKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSIL 92 (419)
Q Consensus 16 ~~~~~t~v~v~~~---dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (419)
.-.+.++|+|.+. +.+|.+..+-.+|.+.|.+|---..+++.. -..|-++ .+ +.+.+...++..+...
T Consensus 313 ~~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~-~~-----~~~~~~~~l~~~~~~~- 383 (810)
T PRK09466 313 SLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYT-SE-----VADSALKLLDDAALPG- 383 (810)
T ss_pred ccCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEe-HH-----HHHHHHHHHHhhcCCC-
Confidence 3466888999876 678889999999999999987665556653 2223333 21 2233334444433111
Q ss_pred cccccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEE
Q 044730 93 VSYYFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.+ .-..+...|.++|. .++|+.+++..+|.+.++|+..-
T Consensus 384 --------~i-~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 --------EL-KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred --------cE-EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 10 12245778999984 68999999999999999999643
No 282
>PRK12483 threonine dehydratase; Reviewed
Probab=58.62 E-value=1.1e+02 Score=32.75 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=84.8
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHH-HHHHHHHHHHhccccc
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRR-EETCEHMIAVLGEYSI 185 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~-~~i~~~L~~vL~~~~~ 185 (419)
.....+.+.-+||||-|.+++.+|... ||.+-+-.....+. ..++....- .+++.. ++|.+.|++ .+..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~----~~~~~~~~~i~~~l~~--~g~~- 412 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQT----HPRHDPRAQLLASLRA--QGFP- 412 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEe----CChhhhHHHHHHHHHH--CCCC-
Confidence 346788889999999999999999988 88876655433333 334433331 123343 666666654 2210
Q ss_pred chhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHH
Q 044730 186 SCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYD 265 (419)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~ 265 (419)
. ..+... .+...+...|-. + ..+ ....--.+.|.=|.|||=|.+
T Consensus 413 -~-~dlsdn---------e~~k~h~r~~~g---------------~---~~~-------~~~~E~~~~v~iPE~pGa~~~ 456 (521)
T PRK12483 413 -V-LDLTDD---------ELAKLHIRHMVG---------------G---RAP-------LAHDERLFRFEFPERPGALMK 456 (521)
T ss_pred -e-EECCCC---------HHHHHHHHhccC---------------C---CCC-------CCCceEEEEEEcCCCCcHHHH
Confidence 0 000000 011111111211 0 000 011233677778999999999
Q ss_pred HHHHHHh-CCceEEEEEEEEeecCceeEeEEE-EecCCCCCCCHHHHHHHHHHHHH
Q 044730 266 ILRTSKD-LNIQIAYGRISSSVKGYRNMDLFI-RQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 266 i~~~L~~-~~~~I~~A~I~t~t~g~~~~d~F~-v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
...+|.. .++.-++=|.. |.....+|+ ++. . +++.+.+.+.|.+
T Consensus 457 f~~~l~~~~niTeF~YR~~----~~~~a~v~vgi~~-----~-~~~~~~~~~~l~~ 502 (521)
T PRK12483 457 FLSRLGPRWNISLFHYRNH----GAADGRVLAGLQV-----P-EDERAALDAALAA 502 (521)
T ss_pred HHHHhCCCcceeeeeecCC----CCCceEEEEEEee-----C-hhHHHHHHHHHHH
Confidence 9999997 47777764443 333444453 232 1 1344566666543
No 283
>PRK09084 aspartate kinase III; Validated
Probab=58.15 E-value=1.1e+02 Score=32.01 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=64.6
Q ss_pred CCCCCeEEEEeCC---CCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCc
Q 044730 16 TPTEPSVVTVNCP---DKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSIL 92 (419)
Q Consensus 16 ~~~~~t~v~v~~~---dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (419)
...+.++|+|.+. +++|.+-++-.+|.+.+++|---. +|... .-|.|.+. .........+.+.+.+-+...
T Consensus 302 ~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~-sse~s---Is~~i~~~-~~~~~~~~~~~~~l~~el~~~- 375 (448)
T PRK09084 302 LRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT-TSEVS---VSLTLDTT-GSTSTGDTLLTQALLTELSQL- 375 (448)
T ss_pred eeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe-ccCcE---EEEEEech-hhhhhhhHHHHHHHHHHHhcC-
Confidence 3567789999765 689999999999999999987665 33321 23444332 210111122222222212110
Q ss_pred cccccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCe
Q 044730 93 VSYYFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFT 136 (419)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~n 136 (419)
... .-..+...|.++|. ++||+++++..+|.+.++.
T Consensus 376 ~~i--------~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~ 414 (448)
T PRK09084 376 CRV--------EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNIR 414 (448)
T ss_pred CeE--------EEECCeEEEEEECCCcccCcChHHHHHHHHHhCCeE
Confidence 000 12245678999985 7999999999999875433
No 284
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.99 E-value=66 Score=22.91 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=26.8
Q ss_pred eEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 110 YLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 110 ~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
..|.++|. +.+|+++++...|++.|++|.--..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 35677774 7899999999999999999975433
No 285
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=57.90 E-value=61 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.7
Q ss_pred EEEEEEe---CCCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCCV---DRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|++.|. +++|+++++...|++.+.++...
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 4677665 88999999999999999999754
No 286
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.68 E-value=1.2e+02 Score=26.74 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCC
Q 044730 260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELL 339 (419)
Q Consensus 260 pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~ 339 (419)
..+..-+..++.++|+.+.+.++... .++...-+|+=...|-.+ +.++++.+.+.+.|.... +..
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~-~~~~~lrI~id~~g~v~l---ddC~~vSr~is~~LD~ed-----------pi~ 72 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKE-GRDSVLRIYIDKEGGVTL---DDCADVSRAISALLDVED-----------PIE 72 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEc-CCCcEEEEEeCCCCCCCH---HHHHHHHHHHHHHhccCC-----------ccc
Confidence 34566677889999999999998862 334555444433423233 457888888888886431 112
Q ss_pred cceEEEEEeC--CCcchHHHHHHHHHhCCce
Q 044730 340 VANPVELCGK--GRPRVFYDVTLALKALGIC 368 (419)
Q Consensus 340 ~~t~lev~~~--DRpGLL~~It~~L~~~gl~ 368 (419)
..+.+||+++ |||=.- ....-+-.|-.
T Consensus 73 ~~Y~LEVSSPGldRpL~~--~~~f~r~~G~~ 101 (153)
T COG0779 73 GAYFLEVSSPGLDRPLKT--AEHFARFIGEK 101 (153)
T ss_pred ccEEEEeeCCCCCCCcCC--HHHHHHhcCcE
Confidence 4788999988 566443 33333334433
No 287
>PRK14647 hypothetical protein; Provisional
Probab=56.38 E-value=1.4e+02 Score=26.36 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVA 341 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~ 341 (419)
+-..+..++..+|+.+.+..+.. ..+....-+|+=...|-.+ +.++.+.+.+.+.|... . .....
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~-~~~~~~lrV~ID~~~gvsl---ddC~~vSr~is~~LD~~-------d----~i~~~ 74 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKR-EGREMVLRLFIDKEGGVNL---DDCAEVSRELSEILDVE-------D----FIPER 74 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-cCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHHHccc-------c----cCCCC
Confidence 44556778999999999988775 2334455444422444333 46788888888888642 0 11236
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCce
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGIC 368 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~ 368 (419)
+.|||++++=-.-|...-..-+-.|-.
T Consensus 75 Y~LEVSSPG~~RpL~~~~~f~r~~G~~ 101 (159)
T PRK14647 75 YTLEVSSPGLDRPLKKEADYERYAGRL 101 (159)
T ss_pred eEEEEcCCCCCCcCCCHHHHHHhCCcE
Confidence 789999884444455555555545533
No 288
>PRK14631 hypothetical protein; Provisional
Probab=56.26 E-value=1.6e+02 Score=26.68 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEec----------------CCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQT----------------DGKKVVDPKQQTALCFHLKEEMLHP 324 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~----------------~g~~i~~~~~~~~l~~~L~~al~~~ 324 (419)
.+..-+.-+++.+|+.+.+..+.. ..+....-+|+=.+ .+..++ =+.++.+.+.+.++|...
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~-~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLP-QGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEe-CCCceEEEEEEecCcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhccc
Confidence 456677888999999999988775 23355565555322 112233 246788888888888532
Q ss_pred CeeeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceE
Q 044730 325 LRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 325 ~~v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I 369 (419)
. .....+.|||+++.=-.-|......-+-.|-.|
T Consensus 87 -------d----~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 87 -------D----PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred -------c----cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 0 112367899999865555777777666666443
No 289
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=55.61 E-value=65 Score=27.77 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=43.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
-..+.+.-.||.|.|+++-.++++.++||....=+-. ..++ |.-+.-+... +.. ..-.+|.+.|++
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~--Anvtlsi~~s-sm~----~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGR--ANVTLSIDTS-SME----KDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCce--eeEEEEEEch-hhh----hhHHHHHHHHhc
Confidence 4568888999999999999999999999987654432 2334 4444444322 221 223667777765
No 290
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.41 E-value=79 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=26.8
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGK--GRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.|.+.|. ..||++.++..+|.+.|++|.....++
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3445554 468999999999999999998766655
No 291
>PRK14637 hypothetical protein; Provisional
Probab=54.08 E-value=1.5e+02 Score=26.00 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=56.7
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCC
Q 044730 259 QKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTEL 338 (419)
Q Consensus 259 rpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~ 338 (419)
--|-...+..++..+|+.+.+-++.. ..+....-+|+=..+| ++ =+..+.+.+.+..+|.... ..
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~-~~~~~~lrV~ID~~~g--V~-iddC~~vSr~Is~~LD~~~-------~~---- 71 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRV-QQAQGRVRAVIYSAGG--VG-LDDCARVHRILVPRLEALG-------GV---- 71 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEe-cCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcccc-------cc----
Confidence 35778889999999999999988775 2344455544432444 33 2467888888887775320 00
Q ss_pred CcceEEEEEeCCCcchHHHHHHHHHhCC
Q 044730 339 LVANPVELCGKGRPRVFYDVTLALKALG 366 (419)
Q Consensus 339 ~~~t~lev~~~DRpGLL~~It~~L~~~g 366 (419)
..+.|||++++=-.-|...-..-+-.|
T Consensus 72 -~~y~LEVSSPGldRpL~~~~~f~r~~G 98 (151)
T PRK14637 72 -RDVFLEVSSPGIERVIKNAAEFSIFVG 98 (151)
T ss_pred -cCcEEEEeCCCCCCCCCCHHHHHHhCC
Confidence 135788887743333444444444444
No 292
>PRK09224 threonine dehydratase; Reviewed
Probab=53.75 E-value=1.7e+02 Score=31.09 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=40.9
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhH-HHHHHHHHHH
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQR-REETCEHMIA 178 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r-~~~i~~~L~~ 178 (419)
....+.+.-|||||=|.+++.+|. +.||..-+-.-. +.....+|....-. +++. .+.|.+.|++
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~----~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLS----RGQEERAEIIAQLRA 391 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeC----ChhhHHHHHHHHHHH
Confidence 356788889999999999999998 688887654432 22233344332211 2233 6667777665
No 293
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=53.57 E-value=2.1e+02 Score=30.39 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=42.5
Q ss_pred CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730 108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA 178 (419)
Q Consensus 108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~ 178 (419)
....+.+.-|||||-|.+++.+|.. .||..-+---...+ ...+|....- .+++.+++|.+.|++
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~-~a~v~vgie~----~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRK-DAHIFVGVQL----SNPQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCC-eEEEEEEEEe----CCHHHHHHHHHHHHH
Confidence 4668888899999999999999997 58876655432223 3334433321 135667777777765
No 294
>PRK14639 hypothetical protein; Provisional
Probab=53.45 E-value=1.5e+02 Score=25.79 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=54.4
Q ss_pred HHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcceEEE
Q 044730 266 ILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVE 345 (419)
Q Consensus 266 i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~t~le 345 (419)
+..++..+|+.+.+..+.. ..+....-+|+=...| ++ =+..+.+.+.+.++|... . .....+.+|
T Consensus 3 ~ep~~~~~G~eLvdve~~~-~~~~~~lrV~Id~~~g--v~-iddC~~vSr~is~~LD~~-------d----~i~~~Y~LE 67 (140)
T PRK14639 3 LEALCKECGVSFYDDELVS-ENGRKIYRVYITKEGG--VN-LDDCERLSELLSPIFDVE-------P----PVSGEYFLE 67 (140)
T ss_pred hhHhHHhCCCEEEEEEEEe-cCCCcEEEEEEeCCCC--CC-HHHHHHHHHHHHHHhccc-------c----ccCCCeEEE
Confidence 4567889999999988775 2344555544422444 33 346888888888888642 0 111357888
Q ss_pred EEeCCCcchHHHHHHHHHhCCceE
Q 044730 346 LCGKGRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 346 v~~~DRpGLL~~It~~L~~~gl~I 369 (419)
|++++=-.-|...-..-+-.|-.|
T Consensus 68 VSSPGl~RpL~~~~~f~r~~G~~v 91 (140)
T PRK14639 68 VSSPGLERKLSKIEHFAKSIGELV 91 (140)
T ss_pred EeCCCCCCcCCCHHHHHHhCCCEE
Confidence 888744444555555545555443
No 295
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.23 E-value=55 Score=25.36 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCC
Q 044730 349 KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESL 395 (419)
Q Consensus 349 ~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~ 395 (419)
.+.||++++|-.+|.+.|++|.... + ++ ..-.|-+...+
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--q---s~---~sISftV~~sd 50 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--T---SE---VSISLTLDPSK 50 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e---cC---CEEEEEEEhhh
Confidence 5789999999999999999999763 3 12 44667776543
No 296
>PRK08526 threonine dehydratase; Provisional
Probab=53.15 E-value=81 Score=32.39 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=45.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
...+.+.-+||||-|.+++..+.+.+.||....=.+...........++..-+. .+++..++|.+.|++
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-----KGKEHQEEIRKILTE 394 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 457889999999999999999999999998776644221100001222222222 246677888888865
No 297
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=52.67 E-value=1.6e+02 Score=25.80 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVA 341 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~ 341 (419)
+-.-+..++..+|+.+.+..+.. ..+....-+|+=..+| + +=+.++.+.+.+..+|... . .....
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~-~~~~~~l~V~Id~~~g--v-~iddc~~~Sr~is~~LD~~-------d----~i~~~ 73 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVK-EGRDSTLRIYIDKEGG--I-DLDDCEEVSRQISAVLDVE-------D----PIPGA 73 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-cCCCcEEEEEEECCCC--C-CHHHHHHHHHHHHHHhccc-------c----CCCCC
Confidence 45566888999999999988875 2344455444422444 3 2357888888888888642 0 11235
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCc
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGI 367 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl 367 (419)
+.|||++++=-.-|..--..-+-.|-
T Consensus 74 Y~LEVSSPGi~RpL~~~~~f~r~~G~ 99 (154)
T PRK00092 74 YTLEVSSPGLDRPLKKARDFRRFIGR 99 (154)
T ss_pred eEEEEeCCCCCCcCCCHHHHHHhCCC
Confidence 77999988433334433444444443
No 298
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.51 E-value=82 Score=22.69 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=33.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l 416 (419)
.+.+.|. ++||++.++..+|.+ ++|.....++ ++ ..=.|.|.+.+ ..++...|.+++
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~-----s~-~~is~~V~~~~---------~~~a~~~Lh~~f 62 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALED--INVRMICYGA-----SN-HNLCFLVKEED---------KDEVVQRLHSRL 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEec-----Cc-cEEEEEEeHHH---------HHHHHHHHHHHH
Confidence 4666665 789999999999976 4444433323 30 33346675332 245555565554
No 299
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=51.54 E-value=72 Score=24.21 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730 258 DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKE 319 (419)
Q Consensus 258 DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 319 (419)
..||+++++...|+++|++|.. |.+ +. ..=.|.+... .+.+ +..+.|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~--I~~---s~-~~isftv~~~--~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDL--IST---SE-VHVSMALHME--NAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEE--EEe---CC-CEEEEEEehh--hcCh-HHHHHHHHHHHH
Confidence 4599999999999999999998 664 22 2222444422 2222 255666666655
No 300
>PRK05925 aspartate kinase; Provisional
Probab=51.19 E-value=3.1e+02 Score=28.60 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=67.6
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCe
Q 044730 248 AHTLLQIKCA-DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLR 326 (419)
Q Consensus 248 ~~t~v~V~~~-DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~ 326 (419)
+.+.+++.+. ..+|.++++...|.++|++|.. +.+ + .. .=.|.+..+. .. + ...+.|...+..-.+
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~--i~s-~-~~--sis~~i~~~~--~~-~----~~~~~l~~~l~~~~~ 365 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGL--VMA-Q-NL--GVYFTIDDDD--IS-E----EYPQHLTDALSAFGT 365 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEE--Eec-c-CC--EEEEEEechh--cc-H----HHHHHHHHHhcCCce
Confidence 3456666543 2478899999999999999976 433 1 11 1235554211 11 1 122223333432222
Q ss_pred eeeeCCCCCCCCCcceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 327 VMVTNRGPDTELLVANPVELCGK--GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 327 v~~~~~~~~~~~~~~t~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
+.+.. .-..|.+.|. -++|+.+++..+|.+.|++|.. +++ |+. .-.|.|...
T Consensus 366 i~~~~--------~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~--i~~---s~~---~is~vV~~~ 419 (440)
T PRK05925 366 VSCEG--------PLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC--WCQ---SDM---ALNLVVNEE 419 (440)
T ss_pred EEEEC--------CEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE--EEC---CCc---eEEEEEehH
Confidence 22211 2446777775 2378999999999999999976 333 233 225777643
No 301
>PRK14638 hypothetical protein; Provisional
Probab=49.39 E-value=1.8e+02 Score=25.48 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVA 341 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~ 341 (419)
+-.-+..++..+|+.+.+..+.. ..+....-+|+=..+|. ++ =+.++.+.+.|.+.|.... .....
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~-~~~~~~lrV~ID~~~G~-v~-lddC~~vSr~is~~LD~~d-----------~i~~~ 75 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRR-ESRGWVLRIIIDNPVGY-VS-VRDCELFSREIERFLDRED-----------LIEHS 75 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEe-cCCCcEEEEEEECCCCC-cC-HHHHHHHHHHHHHHhcccc-----------ccCCc
Confidence 44567778999999999977775 23445555554334453 33 2468888888888886420 01136
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCce
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGIC 368 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~ 368 (419)
+.|||++++=-.-|...-..-+-.|=.
T Consensus 76 Y~LEVSSPGldRpL~~~~~f~r~~G~~ 102 (150)
T PRK14638 76 YTLEVSSPGLDRPLRGPKDYVRFTGKL 102 (150)
T ss_pred eEEEEeCCCCCCCCCCHHHHHHhCCCE
Confidence 788888874433455555555555533
No 302
>PRK14633 hypothetical protein; Provisional
Probab=49.14 E-value=1e+02 Score=27.03 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=53.2
Q ss_pred HHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCC-CCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEE
Q 044730 37 LCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSD-KVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYC 115 (419)
Q Consensus 37 ~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~ 115 (419)
+-.++.++||.+....+...|+|.+-||- |.++.. .-+.+.+.+.+...+-.. .+.++.+.++|.
T Consensus 10 v~p~~~~~G~eL~dve~~~~~~~~lrV~I--D~~~Gv~lddC~~vSr~i~~~LD~~------------d~i~~~Y~LEVS 75 (150)
T PRK14633 10 VEPITADLGYILWGIEVVGSGKLTIRIFI--DHENGVSVDDCQIVSKEISAVFDVE------------DPVSGKYILEVS 75 (150)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEEEEEE--eCCCCCCHHHHHHHHHHHHHHhccC------------cCCCCCeEEEEe
Confidence 55688999999999999998888776664 554442 123444544454444211 233456788888
Q ss_pred EeCCCChHHHHHHHHHHcCCeE
Q 044730 116 CVDRKGLLHDATKVLTELEFTI 137 (419)
Q Consensus 116 ~~DrpGLl~~i~~vL~~~g~nI 137 (419)
+|--.--|...-..-...|-.|
T Consensus 76 SPGldRpL~~~~~f~r~~G~~v 97 (150)
T PRK14633 76 SPGMNRQIFNIIQAQALVGFNV 97 (150)
T ss_pred CCCCCCCCCCHHHHHHhCCCeE
Confidence 7644434555555555555543
No 303
>PRK14633 hypothetical protein; Provisional
Probab=49.05 E-value=1.9e+02 Score=25.43 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVA 341 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~ 341 (419)
+-..+..++..+|+.+.+-.+.. .+....-+|+=..+|-.+ +..+.+.+.|..+|... . .....
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~--~~~~~lrV~ID~~~Gv~l---ddC~~vSr~i~~~LD~~--------d---~i~~~ 69 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVG--SGKLTIRIFIDHENGVSV---DDCQIVSKEISAVFDVE--------D---PVSGK 69 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe--CCCcEEEEEEeCCCCCCH---HHHHHHHHHHHHHhccC--------c---CCCCC
Confidence 44567788999999999988775 344455444422555333 46788888888888632 0 11236
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCce
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGIC 368 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~ 368 (419)
+.+||++++=-.-|......-+-.|=.
T Consensus 70 Y~LEVSSPGldRpL~~~~~f~r~~G~~ 96 (150)
T PRK14633 70 YILEVSSPGMNRQIFNIIQAQALVGFN 96 (150)
T ss_pred eEEEEeCCCCCCCCCCHHHHHHhCCCe
Confidence 789999885555566666666655543
No 304
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=48.97 E-value=11 Score=18.73 Aligned_cols=7 Identities=57% Similarity=0.824 Sum_probs=5.6
Q ss_pred EeeeCCC
Q 044730 52 DFSTDGR 58 (419)
Q Consensus 52 ~istdg~ 58 (419)
|+|+|||
T Consensus 1 ~~S~D~G 7 (12)
T PF02012_consen 1 YYSTDGG 7 (12)
T ss_dssp EEESSTT
T ss_pred CEeCCCc
Confidence 5788887
No 305
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=48.50 E-value=27 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred EEEEEE-eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCC-VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|+|.+ ++.||.++++.+.|+++|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 466665 467999999999999999999865
No 306
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=48.42 E-value=27 Score=37.15 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEe
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMT 144 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T 144 (419)
.++|.|.||.|+..+|...|...++|+..-+|..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 5899999999999999999999999999999975
No 307
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.21 E-value=98 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=27.2
Q ss_pred eEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 110 YLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 110 ~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
..|.++|. ++||+.+++...|++.|.++.-...
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 35777774 7899999999999999999975543
No 308
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.00 E-value=93 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=24.7
Q ss_pred EEEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCC---VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|++.| ++.+|++.++.+.|++.|.++...
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMI 34 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 456665 477999999999999999999654
No 309
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=45.07 E-value=1.1e+02 Score=23.07 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=35.8
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 350 GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 350 DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+||++++|-.+|.++|+++.... + ++ ..-.|-+... .+++ +..++|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~---s~---~~isftv~~~---~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--T---SE---VHVSMALHME---NAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--e---CC---CEEEEEEehh---hcCh-HHHHHHHHHHHH
Confidence 569999999999999999998763 3 12 4456666542 2222 244677777665
No 310
>PRK14632 hypothetical protein; Provisional
Probab=43.62 E-value=2.5e+02 Score=25.30 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcc
Q 044730 262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVA 341 (419)
Q Consensus 262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~ 341 (419)
+-.-+..++..+|+.+.+..+.. .+....-+|+=..+|-.+ +.++.+.+.+.++|... .. ....
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~--~~~~~lrV~ID~~~GV~l---dDC~~vSr~is~~LD~~-------d~----i~~~ 73 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY--GGRTVVRLFVDGPEGVTI---DQCAEVSRHVGLALEVE-------DV----ISSA 73 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe--CCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhccc-------cc----CCCC
Confidence 44556778899999999988653 344455444422445333 46788888888888632 00 1135
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCC
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALG 366 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~g 366 (419)
+.|||++++=-.-|...-..-+-.|
T Consensus 74 Y~LEVSSPGldRpL~~~~~f~r~iG 98 (172)
T PRK14632 74 YVLEVSSPGLERPFFRAEQMSPYVG 98 (172)
T ss_pred eEEEEeCCCCCCcCCCHHHHHHhCC
Confidence 6788887733333444444444444
No 311
>PRK08841 aspartate kinase; Validated
Probab=43.28 E-value=1.2e+02 Score=30.97 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCCCeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccc
Q 044730 17 PTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYY 96 (419)
Q Consensus 17 ~~~~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (419)
..+.++|+|.+ +.+..+.+.|.+.|..+.--.-+.+. -.|.|. ...+. .++..++...
T Consensus 255 ~~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~~~~~~----~~~~v~---------~~~~~-~~~~~~~~~i---- 312 (392)
T PRK08841 255 QRDLALIEVES----ESLPSLTKQCQMLGIEVWNVIEEADR----AQIVIK---------QDACA-KLKLVFDDKI---- 312 (392)
T ss_pred eCCeEEEEecc----chHHHHHHHHHHcCCCEEEEEecCCc----EEEEEC---------HHHHH-HHHHhCcccE----
Confidence 45677778754 34678888899988665533222221 123331 12221 1222232110
Q ss_pred cCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEE
Q 044730 97 FNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQR 139 (419)
Q Consensus 97 ~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~ 139 (419)
....+...|.++|...||+.+++..+|.+.++||..
T Consensus 313 -------~~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 313 -------RNSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred -------EEeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 112456789999999999999999999999999954
No 312
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.08 E-value=1.1e+02 Score=21.26 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=24.8
Q ss_pred EEEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730 111 LLKYCC---VDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 111 ~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
.|++.| ++.+|+++++...|++.+.++..-
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMI 34 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 466665 477999999999999999999654
No 313
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=42.83 E-value=44 Score=25.90 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred hHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCC
Q 044730 34 GCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSD 73 (419)
Q Consensus 34 l~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~ 73 (419)
.-++.+.|...|+.|.+..+..||.|-.. +++.+|++
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~~g~yev~---~~~~dG~~ 67 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDDDGCYEVE---ARDKDGKK 67 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCEEEEE---EEECCCCE
Confidence 67899999999999999999889986644 77888874
No 314
>PLN02550 threonine dehydratase
Probab=42.57 E-value=2.6e+02 Score=30.45 Aligned_cols=126 Identities=15% Similarity=0.199 Sum_probs=70.5
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccchh
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCE 188 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~~ 188 (419)
...+.+.-+||||-|.+++.+|... ||.+-+-....-+.+--.+.|.. .+++..++|.+.|++ .+. ..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~l~~--~g~--~~- 484 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-----HTEQELQALKKRMES--AQL--RT- 484 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-----CCHHHHHHHHHHHHH--CCC--Ce-
Confidence 4678888899999999999999986 88776554322233222222222 135566667776665 221 00
Q ss_pred hhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHHH
Q 044730 189 IQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILR 268 (419)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~ 268 (419)
..+...+.+ +.++ +.. .+ ....+ ..-..+.+.=+.|||-|.+...
T Consensus 485 ~~l~~~~~~----~~~L------R~v---------------~g---~ra~~-------~~E~l~~v~fPErpGAl~~Fl~ 529 (591)
T PLN02550 485 VNLTSNDLV----KDHL------RYL---------------MG---GRAIV-------KDELLYRFVFPERPGALMKFLD 529 (591)
T ss_pred EeCCCChHH----hhhh------hhe---------------ec---ccccc-------CceEEEEEEecCcCCHHHHHHH
Confidence 011000000 0001 000 00 00111 1233677888999999999999
Q ss_pred HHHh-CCceEEEEE
Q 044730 269 TSKD-LNIQIAYGR 281 (419)
Q Consensus 269 ~L~~-~~~~I~~A~ 281 (419)
+|.. .++.-++=+
T Consensus 530 ~lg~~~nITeF~YR 543 (591)
T PLN02550 530 AFSPRWNISLFHYR 543 (591)
T ss_pred hhCCCCceeeEEee
Confidence 9987 477777655
No 315
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=42.42 E-value=76 Score=26.82 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.1
Q ss_pred ceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecc
Q 044730 341 ANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHS 378 (419)
Q Consensus 341 ~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~ 378 (419)
...+.+.++ |-+|+|+.|.+.|+++||.|+- ++|+.
T Consensus 63 W~~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vStyd 101 (128)
T COG3603 63 WSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VSTYD 101 (128)
T ss_pred eEEEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEecc
Confidence 344555554 8899999999999999999985 56633
No 316
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=41.54 E-value=1.4e+02 Score=25.57 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcceEEE
Q 044730 266 ILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVE 345 (419)
Q Consensus 266 i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~t~le 345 (419)
|...+..+|+.+.+..+.. ..+....-+|+-. ++. ++ =+.++.+.+.+...|... . .....+.+|
T Consensus 2 i~~~~~~~g~~l~~v~~~~-~~~~~~l~V~id~-~~g-v~-lddc~~~sr~i~~~LD~~--------d---~i~~~y~LE 66 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVK-EGGNRILRVFIDK-DGG-VS-LDDCEKVSRAISALLDAE--------D---PIPEDYTLE 66 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEE-ETTEEEEEEEEE--SS-----HHHHHHHHHHHGGGTTTS---------------S-EEEE
T ss_pred cccchhhcCCEEEEEEEEE-CCCCEEEEEEEEe-CCC-CC-HHHHHHHHHHHHHHHccc--------c---ccCcceEEE
Confidence 4567889999999988886 3444456555544 433 33 356788888887777542 0 112367899
Q ss_pred EEeCCCcchHHHHHHHHHhCC
Q 044730 346 LCGKGRPRVFYDVTLALKALG 366 (419)
Q Consensus 346 v~~~DRpGLL~~It~~L~~~g 366 (419)
|++++=-.-|...-..-+-.|
T Consensus 67 VSSPG~~r~L~~~~~~~~~iG 87 (141)
T PF02576_consen 67 VSSPGIDRPLKSPRDFERFIG 87 (141)
T ss_dssp EE--SSSS--SSHHHHHHH-S
T ss_pred EeCCCCCCcCCCHHHHHHhcC
Confidence 998744334433333333344
No 317
>PRK00907 hypothetical protein; Provisional
Probab=41.53 E-value=1.9e+02 Score=23.30 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.+++.|.|.++++|...|..++..+.-......+....-.......-++-|+ .++.+++++|.++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~------ats~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR------AESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 4789999999999999999999988765555555331111111133333333 2346777888877764
No 318
>PRK00907 hypothetical protein; Provisional
Probab=41.43 E-value=1.4e+02 Score=23.93 Aligned_cols=64 Identities=8% Similarity=0.187 Sum_probs=42.0
Q ss_pred eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEE--ecCCCeEE-EEEEEecCCCCCCchhHHHHHHHHHH
Q 044730 109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM--TTPDGRVL-DLFFITDGLELLHTKQRREETCEHMI 177 (419)
Q Consensus 109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~--T~~~g~~~-d~f~V~~~~~~~~~~~r~~~i~~~L~ 177 (419)
.+-|.|.|.++++|...|..++..+.-..-...+. .+.+|+.. -.+.|.-. +.+.++.|-+.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-----s~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-----SREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-----CHHHHHHHHHHHh
Confidence 57899999999999999999999988766555553 33456533 22333321 2444555555544
No 319
>PLN02550 threonine dehydratase
Probab=40.97 E-value=5.1e+02 Score=28.20 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCCeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeee-CCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCc----
Q 044730 18 TEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFST-DGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSIL---- 92 (419)
Q Consensus 18 ~~~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~ist-dg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~---- 92 (419)
+.-..+.|.-+||+|-|.+++++|... +|+..+-.- +-+ .--++....-.+. -..+.+.+.+++..-...
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~-~~~v~v~ie~~~~--~~~~~i~~~l~~~g~~~~~l~~ 489 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEK-EALVLYSVGVHTE--QELQALKKRMESAQLRTVNLTS 489 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCC-ceEEEEEEEeCCH--HHHHHHHHHHHHCCCCeEeCCC
Confidence 444678999999999999999999987 555433221 111 1223333333332 233455555555432211
Q ss_pred --cccccCCCCCC--CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEE
Q 044730 93 --VSYYFNQPSSN--SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140 (419)
Q Consensus 93 --~~~~~~~~~v~--~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A 140 (419)
..|..-+..++ .....-..+.+.=|.|||=|.+.+.+|.. ..||..-
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF 540 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLF 540 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeE
Confidence 01111111121 11133557788889999999999998874 3455443
No 320
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=40.82 E-value=7.6e+02 Score=30.20 Aligned_cols=175 Identities=16% Similarity=0.092 Sum_probs=108.8
Q ss_pred EEEecCCCCCCCeEEEEeCCCCCc--hhHHHHHHHHhc-CeEEEEEE-eeeCCCeEEEEEEEEcCCCCC-CCCHHHHHHH
Q 044730 9 VLVQLGSTPTEPSVVTVNCPDKNG--LGCDLCRIILEF-GLFIVRGD-FSTDGRWCYIVLWVVPDASSD-KVDWESLKNR 83 (419)
Q Consensus 9 v~~~~~~~~~~~t~v~v~~~dk~G--ll~d~~~~l~d~-~l~I~k~~-istdg~w~~dvf~v~~~~g~~-~~~~~~~~~~ 83 (419)
++++...-..-.+++=.--.|+.- +-..+-++|.+- +-....-+ ..+++.....-|.+.-..+.. ..+.+.|...
T Consensus 331 lf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le~~ 410 (1528)
T PF05088_consen 331 LFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALEAR 410 (1528)
T ss_pred EEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHHHH
Confidence 455554444445555555566665 445666677654 33333333 345888888888887776664 4677777777
Q ss_pred HHhhCCC---------------C-----------------cccccc--------------CCCCC-------CCCCCCee
Q 044730 84 LLSVCPS---------------I-----------------LVSYYF--------------NQPSS-------NSSKPSLY 110 (419)
Q Consensus 84 ~~~~~~~---------------~-----------------~~~~~~--------------~~~~v-------~~~~~~~~ 110 (419)
+..+.-+ . .+.|.+ ...++ ....++.+
T Consensus 411 l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~ 490 (1528)
T PF05088_consen 411 LAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRL 490 (1528)
T ss_pred HHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeE
Confidence 6543210 0 000110 00111 12334578
Q ss_pred EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC--CC--eEEEEEEEecCCCCC-CchhHHHHHHHHHHHHhccc
Q 044730 111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP--DG--RVLDLFFITDGLELL-HTKQRREETCEHMIAVLGEY 183 (419)
Q Consensus 111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~--~g--~~~d~f~V~~~~~~~-~~~~r~~~i~~~L~~vL~~~ 183 (419)
.+.++.+.++..|+++.-+|..+|+.|++.+-+... +| ..+.-|.+..+.+.. ...+..+.+++.|.++..+.
T Consensus 491 ~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 491 RLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred EEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999876543 23 356667887765542 23455667888888877654
No 321
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.64 E-value=1.5e+02 Score=22.08 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=26.7
Q ss_pred eEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEE
Q 044730 110 YLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKV 142 (419)
Q Consensus 110 ~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i 142 (419)
..|++.|. +.+|+++++...|++.+.++.--..
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 35777653 7889999999999999999975543
No 322
>PRK14643 hypothetical protein; Provisional
Probab=40.18 E-value=2.7e+02 Score=24.83 Aligned_cols=95 Identities=7% Similarity=-0.044 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe---cCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCC
Q 044730 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ---TDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTE 337 (419)
Q Consensus 261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~---~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~ 337 (419)
.+-.-+..++..+|+.+.+..... ..+..+.-+|+-. .+| .++ =+..+.+.+.+.+.|... . .
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~-~~~~~~lrV~Id~~~~~~g-gvt-ldDC~~vSr~is~~LD~~-------d----~ 75 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLK-EFENDMIQILVEDILQANK-PLD-FDILIKANDLVSNKIDQF-------I----K 75 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEe-cCCCcEEEEEEecCCCcCC-CcC-HHHHHHHHHHHHHHhCcc-------C----C
Confidence 345566778899999999988775 2345556555532 233 233 246788888888888632 0 1
Q ss_pred CCcceEEEEEeCCCcchHHHHHHHHHhCCceE
Q 044730 338 LLVANPVELCGKGRPRVFYDVTLALKALGICI 369 (419)
Q Consensus 338 ~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I 369 (419)
.+..+.+||++++=-.-|...-..-+-.|-.|
T Consensus 76 i~~~Y~LEVSSPGleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 76 TSEKYLLEISSSGIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCeEEEecCCCCCCCCCCHHHHHHhcCCeE
Confidence 22478899998865555666666666566544
No 323
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=39.87 E-value=2.5e+02 Score=31.92 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=64.1
Q ss_pred CCCCeEEEEeC---CCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCcc
Q 044730 17 PTEPSVVTVNC---PDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILV 93 (419)
Q Consensus 17 ~~~~t~v~v~~---~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 93 (419)
..+.++|+|.+ ++++|.+-++-.+|.+.+.+|---. +|+.. ..|-+ +.... ....+.++..+..+..-.
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~-sse~s---is~~i-~~~~~-~~~~~~~~~l~~~l~~~~-- 390 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS-SSETN---VTVSL-DPSEN-LVNTDVLAALSADLSQIC-- 390 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE-cCCCE---EEEEE-ccccc-cchHHHHHHHHHHHhhcC--
Confidence 56678889854 4689999999999999999996552 33322 12333 33221 111223332222221000
Q ss_pred ccccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeE
Q 044730 94 SYYFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTI 137 (419)
Q Consensus 94 ~~~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI 137 (419)
. + ....+...|.++|. .+||+.+++..+|++.++++
T Consensus 391 ---~----i-~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ---R----V-KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ---c----E-EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0 0 11234678999995 88999999999999977655
No 324
>PRK02047 hypothetical protein; Provisional
Probab=38.84 E-value=1.9e+02 Score=23.08 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEe--cCCCeE
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMT--TPDGRV 150 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T--~~~g~~ 150 (419)
|..+.+.+.|++.+++...|.+++..+...+..+.+.+ +.+|+.
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY 59 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNY 59 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeE
Confidence 34689999999999999999999999977766665543 345653
No 325
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.17 E-value=94 Score=24.06 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=38.2
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730 257 ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML 322 (419)
Q Consensus 257 ~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~ 322 (419)
....|++.++..+|.++|+++.+ +-| | .|.|-+..+...+.++ ..+.+.+.|+..+.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh--~PS---G---ID~~Siii~~~~~~~~-~~~~i~~~i~~~~~ 68 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEH--MPS---G---IDDISIIIRDNQLTDE-KEQKILAEIKEELH 68 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEee--ecC---C---CccEEEEEEccccchh-hHHHHHHHHHHhcC
Confidence 34569999999999999999999 664 2 2334443333344432 56777777777663
No 326
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=35.53 E-value=2.7e+02 Score=28.63 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
...+.+.=+||||=|.++...+...+.||...+-.. ..+.. ...++..-+.. +++..++|.+.|++
T Consensus 325 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~--~~~v~v~iE~~-----~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 325 KHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRE--TGPALIGIELN-----DKEDFAGLLERMAA 390 (409)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCC--eEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 457888999999999999996666777998555442 12222 22233222222 25566778887765
No 327
>PRK14632 hypothetical protein; Provisional
Probab=34.53 E-value=2.1e+02 Score=25.72 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=50.4
Q ss_pred HHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCC-CCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEE
Q 044730 37 LCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSD-KVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYC 115 (419)
Q Consensus 37 ~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~ 115 (419)
+-.++.++||.+....+..-|+|.+-||- |.++.. .-+.+.+.+.+.+++-.. .+.++.+.|+|.
T Consensus 14 i~pv~~~~G~eLvdve~~~~~~~~lrV~I--D~~~GV~ldDC~~vSr~is~~LD~~------------d~i~~~Y~LEVS 79 (172)
T PRK14632 14 AGPFLASLGLELWGIELSYGGRTVVRLFV--DGPEGVTIDQCAEVSRHVGLALEVE------------DVISSAYVLEVS 79 (172)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEEEEEE--ECCCCCCHHHHHHHHHHHHHHhccc------------ccCCCCeEEEEe
Confidence 34567899999999999987789887774 655442 223444555555544211 223456778888
Q ss_pred EeCCCChHHHHHHHHHHcCCe
Q 044730 116 CVDRKGLLHDATKVLTELEFT 136 (419)
Q Consensus 116 ~~DrpGLl~~i~~vL~~~g~n 136 (419)
+|--.--|...-..-...|-.
T Consensus 80 SPGldRpL~~~~~f~r~iG~~ 100 (172)
T PRK14632 80 SPGLERPFFRAEQMSPYVGRQ 100 (172)
T ss_pred CCCCCCcCCCHHHHHHhCCCE
Confidence 763333344444444444443
No 328
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.23 E-value=58 Score=26.21 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCC
Q 044730 354 VFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLA 400 (419)
Q Consensus 354 LL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~ 400 (419)
=+.++-.-|.+.|+.+...-... .....+....||+.|++|+.+.
T Consensus 77 dv~~~~~~l~~~g~~~~~~p~~~--~~~~~~~~~~~~~~DPdG~~iE 121 (125)
T cd08357 77 EFDALAERLEAAGVEFLIEPYTR--FEGQPGEQETFFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHCCCcEecCccee--ccCCcCceeEEEEECCCCCEEE
Confidence 36788889999999987643322 1112224577999999998764
No 329
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.16 E-value=1.8e+02 Score=21.06 Aligned_cols=29 Identities=0% Similarity=0.048 Sum_probs=24.2
Q ss_pred EEEEEec--CCccHHHHHHHHHHhCCceEEE
Q 044730 251 LLQIKCA--DQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 251 ~v~V~~~--DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
.|.+.|. ..+|++.++..+|++.|++|.-
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~ 33 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQM 33 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 4556654 4689999999999999999987
No 330
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=33.02 E-value=1.2e+02 Score=22.38 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=22.8
Q ss_pred HHHHHHcCCeEEEEEEEecCCCeEEEEEEEecC
Q 044730 127 TKVLTELEFTIQRVKVMTTPDGRVLDLFFITDG 159 (419)
Q Consensus 127 ~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~ 159 (419)
.......|..+..=.|.| .||+.+.++.+...
T Consensus 2 ~~~i~~~GY~~E~h~V~T-~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTT-EDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE--TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEe-CCCcEEEEEEccCC
Confidence 356778899999888988 99999999999764
No 331
>PF14042 DUF4247: Domain of unknown function (DUF4247)
Probab=32.44 E-value=47 Score=28.62 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCceEEEecCCCCCCCeEEEEeCCC
Q 044730 4 PCDDIVLVQLGSTPTEPSVVTVNCPD 29 (419)
Q Consensus 4 ~~~~~v~~~~~~~~~~~t~v~v~~~d 29 (419)
+.||.|.|++-..-+.+|+|.|++.+
T Consensus 69 Y~D~iV~v~p~~~~~~~~~I~v~~~~ 94 (132)
T PF14042_consen 69 YSDDIVIVQPDGAGPSDTLIEVEDYD 94 (132)
T ss_pred eCCcEEEEecCCCCCCceEEEEeccC
Confidence 56899999988888889999999988
No 332
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.26 E-value=99 Score=24.54 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=35.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCC
Q 044730 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLA 400 (419)
Q Consensus 344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~ 400 (419)
+-+...++ +..+.+.|.+.|+.+....... .|.. +....||+.|++|..+.
T Consensus 71 i~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~--~~~~-~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 71 LCLITEPP---IDELVAHLEAHGVPIEEGPVPR--TGAR-GPITSVYFRDPDGNLIE 121 (125)
T ss_pred EEEEeccc---HHHHHHHHHHCCceeecCcccc--cCCC-CCccEEEEECCCCCEEE
Confidence 44444444 7889999999999987655443 2222 24567999999998764
No 333
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.85 E-value=77 Score=23.05 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=23.1
Q ss_pred EEEEEEe---CCCChHHHHHHHHHHcCCeEE
Q 044730 111 LLKYCCV---DRKGLLHDATKVLTELEFTIQ 138 (419)
Q Consensus 111 ~i~v~~~---DrpGLl~~i~~vL~~~g~nI~ 138 (419)
.|.++|. +.||+++++..+|.+.+.++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4677775 779999999999999877763
No 334
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=31.09 E-value=1.1e+02 Score=30.25 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe---cCCCCCCCHHHHHHHHH--HHHHHhcCC----Cee
Q 044730 257 ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ---TDGKKVVDPKQQTALCF--HLKEEMLHP----LRV 327 (419)
Q Consensus 257 ~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~---~~g~~i~~~~~~~~l~~--~L~~al~~~----~~v 327 (419)
-..|--|....+.|..++.|+..-.+.. |- +.+. ++.. .+-..|.++ +.+.+-. -|+.-|+.. .|.
T Consensus 190 lSHPQal~Qce~~L~~l~~~~~r~a~~d-Ta-~Aa~--~~s~~~~~d~~AIASe-~aA~ly~l~Il~~~IqDd~~NvTRF 264 (377)
T KOG2797|consen 190 LSHPQALGQCECSLTKLGPNAAREAVSD-TA-GAAE--QISASNTADTAAIASE-RAAELYGLNILEKNIQDDLGNVTRF 264 (377)
T ss_pred ecCcHHHHHHHHHHHhcccceeeeeccc-hH-HHHH--HHHhcccccHHHHHHH-HHHHHhcchhhhhhcccccCCeeEE
Confidence 4689999999999999998877644443 22 2221 1111 111123321 2121111 112223222 122
Q ss_pred eeeCCC---CCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecc------cCCceeEEEEEEEe
Q 044730 328 MVTNRG---PDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHS------TSHRQWEVYRFLLD 392 (419)
Q Consensus 328 ~~~~~~---~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~------~Ge~~~~~d~F~v~ 392 (419)
-+..|+ +++..+..|.|--.-.+-||.|.++-.+|+-+.|++.+.+...+- .|+...-.+.||+.
T Consensus 265 LmLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~ylFyid 338 (377)
T KOG2797|consen 265 LMLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFEYLFYID 338 (377)
T ss_pred EEEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCcccccccccccEEEEEE
Confidence 222222 222222344455557899999999999999999999988775411 22233356889985
No 335
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=28.44 E-value=3.2e+02 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=43.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
...+.|.-+||||-|.+++++|... ||...+=.. .+.. ...+|..-.. .+++.+++|.+.|++
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~--~~~~--~a~v~vgie~-----~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY--ADRK--DAHIFVGVQL-----SNPQERQEILARLND 387 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe--cCCC--eEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 4578999999999999999999974 666555443 3333 4455544332 235666788888765
No 336
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=3.1e+02 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730 247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISS 284 (419)
Q Consensus 247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t 284 (419)
++...+.+.++ |-+|+|+.|.+.|++.|+-|+- ++|
T Consensus 61 ~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vSt 99 (128)
T COG3603 61 KGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VST 99 (128)
T ss_pred CCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEe
Confidence 45666666664 8999999999999999999998 654
No 337
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=27.93 E-value=58 Score=33.13 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730 343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR 376 (419)
Q Consensus 343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T 376 (419)
.+||...||.||..++-..|...+|++...+|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC
Confidence 4899999999999999999999999999999954
No 338
>PRK00341 hypothetical protein; Provisional
Probab=27.43 E-value=3.2e+02 Score=21.78 Aligned_cols=65 Identities=8% Similarity=0.094 Sum_probs=42.9
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecc-cCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHS-TSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~-~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
+.+.|.|.+.+++...|..++.++. .+....+.+.. .+.+ ...-++-+. +++.+++.+|.++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~Gk-Y~S~tv~i~------~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGK-YTTVQLHIV------ATDEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCE-EEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 7899999999999999999998776 66655554321 1122 122222222 3456777888887764
No 339
>PRK08639 threonine dehydratase; Validated
Probab=27.27 E-value=4.2e+02 Score=27.27 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=41.0
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
...+.+.-+||||-|.++...+...+.||...+-.... +.. ...++..-+. .+++..++|.+.|++
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~-~~~--~~~v~v~iE~-----~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKN-NRE--TGPVLVGIEL-----KDAEDYDGLIERMEA 401 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecC-CCC--ceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 45788899999999999999666655588876543211 122 2223222222 235566788888775
No 340
>PRK04998 hypothetical protein; Provisional
Probab=27.11 E-value=3.1e+02 Score=21.56 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.9
Q ss_pred CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeE
Q 044730 107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRV 150 (419)
Q Consensus 107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~ 150 (419)
|..+.+.+.|+..+++...|.+++..+...-..-+.-.+.+|+.
T Consensus 13 Pc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY 56 (88)
T PRK04998 13 PCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNY 56 (88)
T ss_pred CCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEE
Confidence 34689999999999999999999987743321122333456764
No 341
>PRK00630 nickel responsive regulator; Provisional
Probab=27.04 E-value=3.2e+02 Score=24.00 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=44.4
Q ss_pred EeCCCCCchhHHHHHHHHhc-CeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhh
Q 044730 25 VNCPDKNGLGCDLCRIILEF-GLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSV 87 (419)
Q Consensus 25 v~~~dk~Gll~d~~~~l~d~-~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~ 87 (419)
|-...+.++--.+.++--++ ++.|+---|.-|+.|||.++.|....+ +...+.++|.+.
T Consensus 71 vYdH~~~~l~~~l~~iqH~~~d~Iist~HvHld~~~CLEvivv~G~~~----~I~~la~~l~~~ 130 (148)
T PRK00630 71 IYDHHQRELNQRMIDIQHASGTHILCTTHIHMDHHNCLETIILRGNSF----EIQRLQLEIGGL 130 (148)
T ss_pred EEeCCcchHHHHHHHHHHhhhceEEEEEEEecCCCCEEEEEEEEcCHH----HHHHHHHHHHhc
Confidence 44556668888888888888 777777777779999999999976644 456666666643
No 342
>PRK14639 hypothetical protein; Provisional
Probab=26.76 E-value=3.6e+02 Score=23.34 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHhcCeEEEEEEeeeCC-CeEEEEEEEEcCCCCC-CCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEE
Q 044730 37 LCRIILEFGLFIVRGDFSTDG-RWCYIVLWVVPDASSD-KVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKY 114 (419)
Q Consensus 37 ~~~~l~d~~l~I~k~~istdg-~w~~dvf~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v 114 (419)
+-.++.++|+.+....+.+.| .|.+-||- |.+|.. .-+.+.+.+.+.+.+-.. .+.++.+.++|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~I--d~~~gv~iddC~~vSr~is~~LD~~------------d~i~~~Y~LEV 68 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYI--TKEGGVNLDDCERLSELLSPIFDVE------------PPVSGEYFLEV 68 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEE--eCCCCCCHHHHHHHHHHHHHHhccc------------cccCCCeEEEE
Confidence 346788999999999888855 69887775 655542 223445555555554221 22245667888
Q ss_pred EEeCCCChHHHHHHHHHHcCCeE
Q 044730 115 CCVDRKGLLHDATKVLTELEFTI 137 (419)
Q Consensus 115 ~~~DrpGLl~~i~~vL~~~g~nI 137 (419)
.+|--.--|...-..-...|-.|
T Consensus 69 SSPGl~RpL~~~~~f~r~~G~~v 91 (140)
T PRK14639 69 SSPGLERKLSKIEHFAKSIGELV 91 (140)
T ss_pred eCCCCCCcCCCHHHHHHhCCCEE
Confidence 87633333444444445555544
No 343
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=26.17 E-value=1.1e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=23.9
Q ss_pred EEEEEe-cCCccHHHHHHHHHHhCCceEEE
Q 044730 251 LLQIKC-ADQKGLFYDILRTSKDLNIQIAY 279 (419)
Q Consensus 251 ~v~V~~-~DrpGLl~~i~~~L~~~~~~I~~ 279 (419)
.|+|.+ ++.||.++++...|+++|++|--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDm 32 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDL 32 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEE
Confidence 345554 35699999999999999999998
No 344
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.10 E-value=3.1e+02 Score=24.28 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHhcCeEEEEEEeeeCC-CeEEEEEEEEcCCCCC-CCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEE
Q 044730 39 RIILEFGLFIVRGDFSTDG-RWCYIVLWVVPDASSD-KVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCC 116 (419)
Q Consensus 39 ~~l~d~~l~I~k~~istdg-~w~~dvf~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~ 116 (419)
-++.+||+-+....++..| +|.+-+|- |..|.. +-+.+.+.+.+.+.+-. +.+-++.+.++|.+
T Consensus 16 p~~~~lG~ELv~ve~~~~~~~~~lrI~i--d~~g~v~lddC~~vSr~is~~LD~------------edpi~~~Y~LEVSS 81 (153)
T COG0779 16 PVVESLGFELVDVEFVKEGRDSVLRIYI--DKEGGVTLDDCADVSRAISALLDV------------EDPIEGAYFLEVSS 81 (153)
T ss_pred HhHhhcCcEEEEEEEEEcCCCcEEEEEe--CCCCCCCHHHHHHHHHHHHHHhcc------------CCcccccEEEEeeC
Confidence 4678999999999999988 59988773 555553 22455666666665521 13334678888887
Q ss_pred e--CCC
Q 044730 117 V--DRK 120 (419)
Q Consensus 117 ~--Drp 120 (419)
| |||
T Consensus 82 PGldRp 87 (153)
T COG0779 82 PGLDRP 87 (153)
T ss_pred CCCCCC
Confidence 6 666
No 345
>PRK14644 hypothetical protein; Provisional
Probab=24.93 E-value=4.1e+02 Score=22.90 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=48.1
Q ss_pred HHHHhcCeEEEEEEeee-CCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEe
Q 044730 39 RIILEFGLFIVRGDFST-DGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCV 117 (419)
Q Consensus 39 ~~l~d~~l~I~k~~ist-dg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~ 117 (419)
.++..+|+.+....+.. .|+|++=||- |..+ .-+.+.+.+.+.+++-.. .+.++.+.++|.+|
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~I--dk~~--iddC~~vSr~is~~LD~~------------d~i~~~Y~LEVSSP 69 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVIL--NSRD--LKDIEELTKEISDFIDNL------------SVEFDFDSLDISSP 69 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEE--CCCC--HHHHHHHHHHHHHHhccc------------cCCCCCeEEEEECC
Confidence 57889999999998877 5679998875 4432 223444544454444211 23346778888865
Q ss_pred --CCCChHHHHHHHHHHcCC
Q 044730 118 --DRKGLLHDATKVLTELEF 135 (419)
Q Consensus 118 --DrpGLl~~i~~vL~~~g~ 135 (419)
||| |.. ...-...|-
T Consensus 70 GldRp-L~~--~~f~r~~G~ 86 (136)
T PRK14644 70 GFDMD-YET--DELENHIGE 86 (136)
T ss_pred CCCCC-CCH--HHHHHhCCC
Confidence 888 543 344444443
No 346
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=24.17 E-value=2.4e+02 Score=22.14 Aligned_cols=50 Identities=6% Similarity=-0.129 Sum_probs=35.0
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCC
Q 044730 341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLA 400 (419)
Q Consensus 341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~ 400 (419)
...+-+...| +....+.|.++|+++...-... .+-...||+.|++|..+.
T Consensus 62 ~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~------~~~~~~~~~~DPdG~~~~ 111 (114)
T cd07247 62 GWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDI------PGVGRFAVFADPEGAVFG 111 (114)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEEeCCccc------CCcEEEEEEECCCCCEEE
Confidence 3456666667 6778888999999987543222 123368999999998763
No 347
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.89 E-value=3.3e+02 Score=20.71 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=37.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730 343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414 (419)
Q Consensus 343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~ 414 (419)
.|||..+ +++|.-++|-.+|.+++++|.+=.+.. -.-+.|+... .+..+++..+|.+
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nA--------Ntit~yl~~~-------~k~~~r~~~~Le~ 62 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNA--------NTITHYLAGS-------LKTIKRLTEDLEN 62 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCC--------CeEEEEEEcC-------HHHHHHHHHHHHH
Confidence 4666666 468888999999999999998753322 3445667533 2233555555544
No 348
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=23.85 E-value=2.9e+02 Score=21.65 Aligned_cols=50 Identities=6% Similarity=-0.203 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCC
Q 044730 18 TEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSD 73 (419)
Q Consensus 18 ~~~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~ 73 (419)
+....+.+.+.| +-...+.|...|..|.+.-.... |-...|++.|++|++
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~DPdG~~ 109 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP--GVGRFAVFADPEGAV 109 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC--CcEEEEEEECCCCCE
Confidence 444556666666 55678889999999887643333 223579999999984
No 349
>PRK14644 hypothetical protein; Provisional
Probab=23.81 E-value=4.7e+02 Score=22.50 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCCCCCCcceEEEE
Q 044730 267 LRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVEL 346 (419)
Q Consensus 267 ~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~~~~~~~t~lev 346 (419)
..++..+|+.+.+..+.. ..+..+.-+|+ .. . +=+..+.+.+.|.++|... . .....+.+||
T Consensus 5 e~~~~~~g~el~dve~~~-~~~~~~LrV~I-dk--~---~iddC~~vSr~is~~LD~~------d-----~i~~~Y~LEV 66 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVK-EDGDLFLEVIL-NS--R---DLKDIEELTKEISDFIDNL------S-----VEFDFDSLDI 66 (136)
T ss_pred hhhHHhcCCEEEEEEEEe-CCCCEEEEEEE-CC--C---CHHHHHHHHHHHHHHhccc------c-----CCCCCeEEEE
Confidence 356889999999988875 34455554444 21 1 2246788888888888532 0 1123678999
Q ss_pred EeC--CCcchHHHHHHHHHhCCc
Q 044730 347 CGK--GRPRVFYDVTLALKALGI 367 (419)
Q Consensus 347 ~~~--DRpGLL~~It~~L~~~gl 367 (419)
+++ ||| |.. ...-+-.|=
T Consensus 67 SSPGldRp--L~~-~~f~r~~G~ 86 (136)
T PRK14644 67 SSPGFDMD--YET-DELENHIGE 86 (136)
T ss_pred ECCCCCCC--CCH-HHHHHhCCC
Confidence 987 788 333 344444453
No 350
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=22.51 E-value=2.4e+02 Score=23.78 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730 358 VTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES 394 (419)
Q Consensus 358 It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~ 394 (419)
|...|...+..|.-+.+++ -|.| .-.||+.+.
T Consensus 68 i~~~l~~~~~~i~vG~~t~--~g~r---~~~fY~~d~ 99 (136)
T PF05117_consen 68 IIEALEADGNAIYVGRITG--NGRR---EFYFYCKDP 99 (136)
T ss_pred HHHHhhcCCcceEEEEEEE--CCEE---EEEEEECCh
Confidence 5567777888888899988 5565 445999765
No 351
>PRK01002 nickel responsive regulator; Provisional
Probab=22.42 E-value=3.7e+02 Score=23.29 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=43.2
Q ss_pred CeEEE-EeCCCCCchhHHHHHHHHhc-CeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHH
Q 044730 20 PSVVT-VNCPDKNGLGCDLCRIILEF-GLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLL 85 (419)
Q Consensus 20 ~t~v~-v~~~dk~Gll~d~~~~l~d~-~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~ 85 (419)
+.+|. |-...+.++--.+.++.-++ ++.+..--|--|+.||+.+|.|..... +...+.++|.
T Consensus 57 ~GvItivydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhld~~~ClEvivv~G~~~----~I~~l~~kL~ 120 (141)
T PRK01002 57 VGTISVIYDHHSTGVMEKLTDIQHDYSDLIVASLHIHLDHDHCLEVIVVRGDAK----EIRELTEKLM 120 (141)
T ss_pred EEEEEEEEeccchhHHHHHHHHHHhccCeEEEeeeeecCCCcEEEEEEEEcCHH----HHHHHHHHHh
Confidence 33444 44455557888888898888 666666666669999999999976543 3455656655
No 352
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=22.33 E-value=1.4e+02 Score=23.61 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=32.1
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730 345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL 399 (419)
Q Consensus 345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l 399 (419)
-..+.+..- |..+.+-|++.|+.+....-.. . .. ....||+.|++|..+
T Consensus 78 ~~~~~~~~d-l~~~~~~l~~~g~~~~~~~~~~--~-~~--~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 78 AFLAFDVDD-LDAAYERLKAQGVEIVEEPDRY--Y-FG--SGYSFYFRDPDGNLI 126 (128)
T ss_dssp EEEESSHHH-HHHHHHHHHHTTGEEEEEEEEH--S-TT--CEEEEEEEETTSEEE
T ss_pred EEEeccHHH-HHHHHHHHhhcCccEEecCCCC--C-CC--CEEEEEEECCCCCEE
Confidence 333333333 3457788999999998765433 2 33 566679999999764
No 353
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=21.51 E-value=3.2e+02 Score=31.62 Aligned_cols=46 Identities=13% Similarity=-0.013 Sum_probs=40.4
Q ss_pred eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCC
Q 044730 117 VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLEL 162 (419)
Q Consensus 117 ~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~ 162 (419)
+-..|+|+.++.++..+||.+.++.+-+..||..+-.|||+...+.
T Consensus 241 ~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 241 YYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 4556999999999999999999999999889988889999876443
No 354
>PRK03094 hypothetical protein; Provisional
Probab=21.01 E-value=2.4e+02 Score=22.07 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCeEEE
Q 044730 123 LHDATKVLTELEFTIQR 139 (419)
Q Consensus 123 l~~i~~vL~~~g~nI~~ 139 (419)
|++|...|...|..|+.
T Consensus 10 Ls~i~~~L~~~GYeVv~ 26 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQ 26 (80)
T ss_pred cHHHHHHHHHCCCEEEe
Confidence 57899999999999964
No 355
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.24 E-value=2.5e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730 355 FYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL 399 (419)
Q Consensus 355 L~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l 399 (419)
+.++...+.++|+.+...-..... ....||+.|++|+.+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~------g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPW------GQRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETT------SEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCC------CeEEEEEECCCCCEE
Done!