BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044731
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 40/369 (10%)
Query: 6 NSRATHVLIFPYPAQGHMLPLLDLTHQL-SLKNLDITILITPKNLPIVS--SLLDARPA- 61
S+ HV I P P GH++PL++ +L L L +T +I + P + ++LD+ P+
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS 62
Query: 62 IQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSA---LGKLYDPIIQWFHSHANPPVAI 118
I ++ LP P + + + +R +L + + L K++D ++ P A+
Sbjct: 63 ISSVFLP----PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVE----GGRLPTAL 114
Query: 119 LSDFFLGWTLNLARELNIVRITFFSSGSFLASVSDYCWNHTGVVKSLDVVEFRDLPRSPV 178
+ D F ++A E ++ F+ + + + S + H + EFR+L P+
Sbjct: 115 VVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSF----FLHLPKLDETVSCEFREL-TEPL 169
Query: 179 FKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSW--GWGCVFNSFDDLESEYLDYLKR 236
+P + ++ D + + K ++ NT + G + N+F +LE + L+
Sbjct: 170 MLPGCVPVAGKDFLDPAQDRKDDAYK-WLLHNTKRYKEAEGILVNTFFELEPNAIKALQE 228
Query: 237 KMGHDR--VFGVGPLSLLGPESTRGGDSGLDPNDNVSKWLDGCPDGSVVYACFGSQKVLS 294
G D+ V+ VGPL +G + + + KWLD P GSV+Y FGS L+
Sbjct: 229 P-GLDKPPVYPVGPLVNIGKQEAKQTE-----ESECLKWLDNQPLGSVLYVSFGSGGTLT 282
Query: 295 KEQMEALALGLEKSGIRFLWVVKTSV---------IHAEGNGYGLIPYGFEERVAGRGLV 345
EQ+ LALGL S RFLWV+++ H++ + +P GF ER RG V
Sbjct: 283 CEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFV 342
Query: 346 LKGWVPQAD 354
+ W PQA
Sbjct: 343 IPFWAPQAQ 351
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/487 (24%), Positives = 199/487 (40%), Gaps = 77/487 (15%)
Query: 7 SRATHVLIFPYPAQGHMLPLLDLTHQLSLKNLDITILITPKNLPIVSSLLDAR-PAIQTL 65
+R HV++ PYP QGH+ PL L L L+ IT + T N LL +R P
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNH---KRLLKSRGPKAFDG 62
Query: 66 VLPFPSHPSVPAGVENVKELGN-RGNLPIM--SALGKLYDPIIQWF----HSHANPPVAI 118
F + S+P G+ ++ G+ ++P + S P + HS PPV
Sbjct: 63 FTDF-NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTC 121
Query: 119 L-SDFFLGWTLNLARELNIVRITFFSSG--SFLASVSDYCWNHTGVVKSLDVVEFRD--- 172
L SD + +T+ A E + + +FSS S L + + G++ D +
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 173 ------LPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSWGWGCVFNSFDDL 226
+P F+ + + R +D EF F++ VA+ ++ + N+F++L
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEF-FIE---VADRVNKDTTILLNTFNEL 237
Query: 227 ESEYLDYLKRKMGHDRVFGVGPL-SLLGPESTRGGDSGLDPN-----DNVSKWLDGCPDG 280
ES+ ++ L + ++ +GPL SLL LD N WL+ G
Sbjct: 238 ESDVINALSSTI--PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPG 295
Query: 281 SVVYACFGSQKVLSKEQMEALALGLEKSGIRFLWVVKTSVIHAEGNGYGLIPYGFEERVA 340
SVVY FGS V++ EQ+ A GL FLW+++ ++ G + F +A
Sbjct: 296 SVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG---GSVIFSSEFTNEIA 352
Query: 341 GRGLVLKGWVPQADQFVNX------XXXXXXXXXXXXXCEGG------------------ 376
RGL+ W PQ D+ +N C G
Sbjct: 353 DRGLI-ASWCPQ-DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
Query: 377 ----------DSVPDSDELGKVIGESLS--QCGETKIKARELRDKALAAVKSGGSSTRDL 424
D+ +EL K+I E ++ + + K KA EL+ KA + GG S +L
Sbjct: 411 CNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNL 470
Query: 425 ETLVQEL 431
+++++
Sbjct: 471 NKVIKDV 477
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 162/375 (43%), Gaps = 52/375 (13%)
Query: 1 MSSCSNSRATHVLIFPYPAQGHMLPLLDLTHQLSL--KNLDITIL-ITPKNLPI----VS 53
MS ++ + ++ P P GH+ L+ L+ KNL IT+ I +P +
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 54 SLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALGKLYDPIIQWFHS-HA 112
S+L ++P IQ + LP P +EL I++ L L + + +
Sbjct: 61 SVLASQPQIQLIDLPEVEPPP--------QELLKSPEFYILTFLESLIPHVKATIKTILS 112
Query: 113 NPPVAILSDFFLGWTLNLARELNIVRITFFSSGSFLASVSDYCWNHTGVVKSLDVVEFRD 172
N V ++ DFF +++ E I F +S S+ N + ++ V F D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN-----RQIEEV-FDD 166
Query: 173 LPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDG------MVANTLSWGWGCVFNSFDDL 226
R + ++P + + S+ P+ F KDG +A G + N+F DL
Sbjct: 167 SDRD--HQLLNIPGISN-QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 227 ESEYLDYLKRKMGHDR----VFGVGPLSLLGPESTRGGDSGLDPNDNVSKWLDGCPDGSV 282
E +D L HD ++ VGPL L + D +D + KWLD PD SV
Sbjct: 224 EQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPKLDQA--QHDLILKWLDEQPDKSV 278
Query: 283 VYACFGSQKV-LSKEQMEALALGLEKSGIRFLWVVKTSVIHAEGNGYGLIPYGFEE--RV 339
V+ CFGS V Q+ +ALGL+ SG+RFLW + + P GF E +
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW--------SNSAEKKVFPEGFLEWMEL 330
Query: 340 AGRGLVLKGWVPQAD 354
G+G++ GW PQ +
Sbjct: 331 EGKGMIC-GWAPQVE 344
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 162/375 (43%), Gaps = 52/375 (13%)
Query: 1 MSSCSNSRATHVLIFPYPAQGHMLPLLDLTHQLSL--KNLDITIL-ITPKNLPI----VS 53
MS ++ + ++ P P GH+ L+ L+ KNL IT+ I +P +
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 54 SLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALGKLYDPIIQWFHS-HA 112
S+L ++P IQ + LP P +EL I++ L L + + +
Sbjct: 61 SVLASQPQIQLIDLPEVEPPP--------QELLKSPEFYILTFLESLIPHVKATIKTILS 112
Query: 113 NPPVAILSDFFLGWTLNLARELNIVRITFFSSGSFLASVSDYCWNHTGVVKSLDVVEFRD 172
N V ++ DFF +++ E I F +S S+ N + ++ V F D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN-----RQIEEV-FDD 166
Query: 173 LPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDG------MVANTLSWGWGCVFNSFDDL 226
R + ++P + + S+ P+ F KDG +A G + N+F DL
Sbjct: 167 SDRD--HQLLNIPGISN-QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 227 ESEYLDYLKRKMGHDR----VFGVGPLSLLGPESTRGGDSGLDPNDNVSKWLDGCPDGSV 282
E +D L HD ++ VGPL L + D +D + KWLD PD SV
Sbjct: 224 EQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPKLDQA--QHDLILKWLDEQPDKSV 278
Query: 283 VYACFGSQKV-LSKEQMEALALGLEKSGIRFLWVVKTSVIHAEGNGYGLIPYGFEE--RV 339
V+ CFGS V Q+ +ALGL+ SG+RFLW + + P GF E +
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW--------SNSAEKKVFPEGFLEWMEL 330
Query: 340 AGRGLVLKGWVPQAD 354
G+G++ GW PQ +
Sbjct: 331 EGKGMIC-GWAPQVE 344
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 24/240 (10%)
Query: 118 ILSDFFLGWTLNLARELNIVRITFFSSG--SFLASV-SDYCWNHTGVVKSLDVVEFRDLP 174
+++D F + +LA E++ + +++G S L V +D TG + DV LP
Sbjct: 121 LVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLP 180
Query: 175 RSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSWGWGCVFNSFDDLESEYLDYL 234
P K LP ++ D D F + M L NSF + + L
Sbjct: 181 GFPELKASDLPE----GVIKDIDVPFATMLHKM-GLELPRANAVAINSFATIHPLIENEL 235
Query: 235 KRKMGHDRVFGVGPLSLLGPESTRGGDSGLDPNDNVSKWLDGCPDGSVVYACFGSQKVLS 294
K + VGP +L P+ + G +WLD + SVVY FGS
Sbjct: 236 NSKF--KLLLNVGPFNLTTPQRKVSDEHG------CLEWLDQHENSSVVYISFGSVVTPP 287
Query: 295 KEQMEALALGLEKSGIRFLWVVKTSVIHAEGNGYGLIPYGFEERVAGRGLVLKGWVPQAD 354
++ ALA LE+ G F+W + G+ +P GF ER +G ++ W PQ +
Sbjct: 288 PHELTALAESLEECGFPFIWSFR-------GDPKEKLPKGFLERTKTKGKIV-AWAPQVE 339
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 49/258 (18%)
Query: 114 PPVAILSDFFLGWTLNLARELNIVRITFFSSGSFLASVSDYC---WNHTGV--------- 161
P +++D F+ + ++A E+ + + F+++G S Y GV
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE 171
Query: 162 ----VKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSWGWG 217
+ + V FRDL VF +L ++F + + L
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFG--NLNSLFSRML-------------HRMGQVLPKATA 216
Query: 218 CVFNSFDDLESEYLDYLKRKMGHDRVFGVGPLSLLGPESTRGGDSGLDPNDNVSKWLDGC 277
NSF++L+ + LK K+ +GP +L+ P +G +WL
Sbjct: 217 VFINSFEELDDSLTNDLKSKL--KTYLNIGPFNLITPPPVVPNTTG------CLQWLKER 268
Query: 278 PDGSVVYACFGSQKVLSKEQMEALALGLEKSGIRFLWVVKTSV-IHAEGNGYGLIPYGFE 336
SVVY FG+ ++ AL+ LE S + F+W ++ +H +P GF
Sbjct: 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH--------LPEGFL 320
Query: 337 ERVAGRGLVLKGWVPQAD 354
E+ G G+V+ W PQA+
Sbjct: 321 EKTRGYGMVVP-WAPQAE 337
>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B22|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B23|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
pdb|4B24|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
Length = 232
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 373 CEGGDSVPDSDELGKVIGESLSQCGETKIKARELRDKALAAVKSGGSSTRDLETLVQE 430
C D P ++ + E+L +CG +K+K++E+ A AA+ S ++E + +E
Sbjct: 89 CSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEE 146
>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2
Bound To Damaged Dna
Length = 217
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 373 CEGGDSVPDSDELGKVIGESLSQCGETKIKARELRDKALAAVKSGGSSTRDLETLVQE 430
C D P ++ + E+L +CG +K+K++E+ A AA+ S ++E + +E
Sbjct: 74 CSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEE 131
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 143 SSGSFLASVSDYCWNHTGVVKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMVSDSDPEFEF 202
SS S C + G +VE +D P+ P+ KEE V +Y+ D D E
Sbjct: 412 SSPSLTILAGGKCDDSVGYFVEPCIVESKD-PQEPIMKEEIFGPVLSVYVYPD-DKYKET 469
Query: 203 VKDGMVANTLSWGW-GCVFNSFDDLESEYLDYLKRKMGHDRVFGVGPLSLLGPESTRGGD 261
++ +V +T S+G G VF+ D+ E L+ G+ + S++G + GG
Sbjct: 470 LQ--LVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVG-QQPFGGA 526
Query: 262 SGLDPNDN 269
ND
Sbjct: 527 RASGTNDK 534
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 143 SSGSFLASVSDYCWNHTGVVKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMVSDSDPEFEF 202
SS S C + G +VE +D P+ P+ KEE V +Y+ D D E
Sbjct: 412 SSPSLTILAGGKCDDSVGYFVEPCIVESKD-PQEPIMKEEIFGPVLSVYVYPD-DKYKET 469
Query: 203 VKDGMVANTLSWGW-GCVFNSFDDLESEYLDYLKRKMGHDRVFGVGPLSLLGPESTRGGD 261
++ +V +T S+G G VF+ D+ E L+ G+ + S++G + GG
Sbjct: 470 LQ--LVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVG-QQPFGGA 526
Query: 262 SGLDPNDN 269
ND
Sbjct: 527 RASGTNDK 534
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 202 FVKDGMVANTLSWGWGCVFNSFDDLESEYLDYLKRKMGHDRVFGVGPLSLLGPESTRGGD 261
F+KD ++ T +WGW + E + ++KR G +R++ G + GG
Sbjct: 109 FLKDRQLSFTANWGWSTWISDI----KEVVSFIKRDSGQERIYLAG--------ESFGGI 156
Query: 262 SGLDPNDNVSK-------WLDGCPDGSVVYACFGSQKVLSKEQMEALAL 303
+ L+ + K LDG P + F + +V S E+ EA +
Sbjct: 157 AALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEXEAKGI 205
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 155 CWNHTGVVKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSW 214
C + G +VE +D P+ P+ KEE V +Y+ D D E ++ +V +T S+
Sbjct: 424 CDDSVGYFVEPCIVESKD-PQEPIMKEEIFGPVLSVYVYPD-DKYKETLQ--LVDSTTSY 479
Query: 215 GW-GCVFNSFDDLESEYLDYLKRKMGHDRVFGVGPLSLLGPESTRGGDSGLDPNDN 269
G G VF+ D+ E L+ G+ + S++G + GG ND
Sbjct: 480 GLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVG-QQPFGGARASGTNDK 534
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 39 DITILITPKNLPIVSSLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALG 98
D+ I TP + + AI V+P PSV AG+++ E G P++
Sbjct: 508 DVHIEFTPNE---TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKA 564
Query: 99 KLYD 102
KLYD
Sbjct: 565 KLYD 568
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 39 DITILITPKNLPIVSSLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALG 98
D+ I TP + + AI V+P PSV AG+++ E G P++
Sbjct: 508 DVHIEFTPNE---TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKA 564
Query: 99 KLYD 102
KLYD
Sbjct: 565 KLYD 568
>pdb|4DF9|A Chain A, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|B Chain B, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|C Chain C, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|D Chain D, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|E Chain E, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|F Chain F, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
Length = 409
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 134 LNIVRITFFSSGSFLASVSDYCWNHTGVVKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMV 193
NIV + S+ S +++ W HT D F + T R+ +
Sbjct: 200 FNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDT-----------FYSDRYLTTSRVKAI 248
Query: 194 SDSDPEFEFVKDGMVANTLSWGWGCVFNSF 223
+D+ + ++ANT +G G ++N+F
Sbjct: 249 NDALAGIPYEHIIILANTEQYGGGGIYNAF 278
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 39 DITILITPKNLPIVSSLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALG 98
D+ I TP + + AI V+P PSV AG+++ E G P++
Sbjct: 508 DVHIEFTPNE---TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKA 564
Query: 99 KLYD 102
KLYD
Sbjct: 565 KLYD 568
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 39 DITILITPKNLPIVSSLLDARPAIQTLVLPFPSHPSVPAGVENVKELGNRGNLPIMSALG 98
D+ I TP + + AI V+P PSV AG+++ E G P++
Sbjct: 508 DVHIEFTPNE---TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKA 564
Query: 99 KLYD 102
KLYD
Sbjct: 565 KLYD 568
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 155 CWNHTGVVKSLDVVEFRDLPRSPVFKEEHLPTVFRIYMVSDSDPEFEFVKDGMVANTLSW 214
C G ++E +D P+ P+ KEE V +Y+ D D E +K +V +T S+
Sbjct: 421 CNESVGYYVEPCIIESKD-PQEPIMKEEIFGPVLTVYVYPD-DKYRETLK--LVDSTTSY 476
Query: 215 GW-GCVFNSFDDLESEYLDYLKRKMGH 240
G G VF + E L+ G+
Sbjct: 477 GLTGAVFAQDKAIVQEATRMLRNAAGN 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,559,320
Number of Sequences: 62578
Number of extensions: 574024
Number of successful extensions: 1262
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 25
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)