BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044732
(250 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255566350|ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223536579|gb|EEF38224.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 443
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/250 (74%), Positives = 212/250 (84%), Gaps = 8/250 (3%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDV+P +IEDAINS+APGKIRVISVS+VSRVFHPNFSAKWRRYLYIFP+NDGE+ EQ
Sbjct: 197 TWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQ 256
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYE-----NIENLLINDEGGFGSHEKPRNFTICRVNL 120
S DSE ++EN + +Q NGC E ++E L+ +D+ +KPR F+ICRVN
Sbjct: 257 SFDSE-DLENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQ 315
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
LLQ+LEGKLLSYK FARDTKASRN+GPPTECFIYHARATEA LPCP DHGEGRKVMCVE
Sbjct: 316 LLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCP--DHGEGRKVMCVE 373
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
LVANRFLRKMVRVLVAT +REAAAGA++DALLKLMDA+CRRA+APPAPP+GLCL DVGYT
Sbjct: 374 LVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYT 433
Query: 241 NFDPQNSLIP 250
FD Q ++P
Sbjct: 434 EFDAQICIVP 443
>gi|224118612|ref|XP_002331405.1| predicted protein [Populus trichocarpa]
gi|222873619|gb|EEF10750.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/250 (72%), Positives = 203/250 (81%), Gaps = 8/250 (3%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVKP +IEDAIN APGK+RV S+S+VSR FHPNFSAKWRRYLYIFPLND +
Sbjct: 182 TWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLND-GENRE 240
Query: 66 SIDSEVEVENFHTSNNVGKQSNGC-----YENIENLLINDEGGFGSHEKPRNFTICRVNL 120
I+ E +ENF + N KQ N C EN+EN +I+DE +KPR+F++CRVN
Sbjct: 241 EIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDELQGAKKPRSFSVCRVNQ 300
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
LLQ+LEGKLLSYK FARDTKASRN+GPPTECF+YHARATE LP P DH +G +VMCVE
Sbjct: 301 LLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSP--DHEKGIRVMCVE 358
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
L+ANRFLRKMVRVLVAT VREAAAGA EDALLKLMDATCRRATAPPAPP+GLCLVDVGYT
Sbjct: 359 LIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYT 418
Query: 241 NFDPQNSLIP 250
FDP+N LIP
Sbjct: 419 EFDPRNCLIP 428
>gi|359474454|ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
Length = 433
Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 171/250 (68%), Positives = 204/250 (81%), Gaps = 8/250 (3%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KDVK DIEDAIN AAPGK+RVISVS+VSR+FHPNFSAKWR Y YIFPLNDG++ EQ
Sbjct: 185 TWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ 244
Query: 66 SIDSEVEVENFHTSNNVGKQSNGC------YENIENLLINDEGGFGSHEKPRNFTICRVN 119
++E++++ + G+Q + C EN ENL+ +D+G F S +KP F+I RV+
Sbjct: 245 ISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVD 304
Query: 120 LLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCV 179
LL++LEGKLLSYK FARDTKASRNIGPPTECF++HARATEA L +D GEG KVMC+
Sbjct: 305 QLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCI 362
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
ELVANRFLRKMVRVLVAT +REAAAGA++DALLKLMDATCRRATAPPAPP+GLCL+DVG+
Sbjct: 363 ELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGF 422
Query: 240 TNFDPQNSLI 249
T FDPQ I
Sbjct: 423 TEFDPQICFI 432
>gi|297742024|emb|CBI33811.3| unnamed protein product [Vitis vinifera]
Length = 402
Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/244 (65%), Positives = 188/244 (77%), Gaps = 27/244 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KDVK DIEDAIN AAPGK+RVISVS+VSR+FHPNFSAKWR Y YIFPLNDG++ EQ
Sbjct: 185 TWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ 244
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
++E++++ + N +KP F+I RV+ LL++L
Sbjct: 245 ISENEMDIQKISFNEN-------------------------RKKPSTFSISRVDQLLRQL 279
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
EGKLLSYK FARDTKASRNIGPPTECF++HARATEA L +D GEG KVMC+ELVANR
Sbjct: 280 EGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCIELVANR 337
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA++DALLKLMDATCRRATAPPAPP+GLCL+DVG+T FDPQ
Sbjct: 338 FLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQ 397
Query: 246 NSLI 249
I
Sbjct: 398 ICFI 401
>gi|297805092|ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316266|gb|EFH46689.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 420
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/255 (62%), Positives = 195/255 (76%), Gaps = 16/255 (6%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKD++P IEDAIN A GK+RV+S+S+VSR FHPNFSAKWRRYLYIFPL+D E+ +
Sbjct: 170 TWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAESLHE 229
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCY--ENIENLLINDE---------GGFGSHEKPRNFT 114
S ++ ENF N KQ NG EN E ++++++ G EKP +F+
Sbjct: 230 SGENH---ENFIFDENHEKQRNGLLSEENTEEVILSEDDELEIEETSNGLEVVEKPSDFS 286
Query: 115 ICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR 174
+ +V+ LLQ+L+GK+LSYK FARDTKA+RN GPPTECF+YHARA E L C +D EGR
Sbjct: 287 VIKVDQLLQQLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSC--SDCVEGR 344
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+VMCVELVANRFLRKMVRVLVAT +REAAAGA+ DALLKL++A+CRRATAPPAP EGLCL
Sbjct: 345 RVMCVELVANRFLRKMVRVLVATSIREAAAGAENDALLKLLEASCRRATAPPAPSEGLCL 404
Query: 235 VDVGYTNFDPQNSLI 249
DVGY +FDPQ SLI
Sbjct: 405 FDVGYADFDPQTSLI 419
>gi|356527708|ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
Length = 404
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/244 (67%), Positives = 187/244 (76%), Gaps = 16/244 (6%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KDVKP DIEDAIN AAPGK+RVISVS+VSRVFHPNFSAKWRRYLYIFPL +G +Q
Sbjct: 174 TWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQ 233
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
S D+ ++F Y I + DE + +K F+I +VN LL++L
Sbjct: 234 SSDNGEFYDSFK------------YNEIHDSASKDE--LENEKKSYAFSISKVNRLLRKL 279
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
EGKLLSYK FARDTKASRN GPPTECF+YHARA E LP DHGE KVMCVELVANR
Sbjct: 280 EGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPA--TDHGEETKVMCVELVANR 337
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA++DAL+KLMDATCRRATAPPAPP+GLCLVDVGYT F+PQ
Sbjct: 338 FLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFEPQ 397
Query: 246 NSLI 249
I
Sbjct: 398 KCFI 401
>gi|449518731|ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 175/250 (70%), Positives = 194/250 (77%), Gaps = 9/250 (3%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWR DVKP DIED+INSAAPGK+R SVSQVSR+FHPNFSAKWRRYLYI PLNDGEN E
Sbjct: 195 TWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP 254
Query: 66 SIDSEVEVENFHTSNNVG-KQSNG--CYENIENLLI---NDEGGFGSHEKPRNFTICRVN 119
+ VEN N V + SNG C + I + L+ NDE S +KP+ F+I RVN
Sbjct: 255 DSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEE-LVSADKPQTFSITRVN 313
Query: 120 LLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCV 179
LL++LEGKLLSYK FARDTKASRN GPPTECF+YHARA E LPC + G GR VMCV
Sbjct: 314 QLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL--EQGVGRSVMCV 371
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
ELVANRFLRKMVRVLVAT +REAAAGA EDALL+LMDATCRRATAPPAPP+GL LVDVGY
Sbjct: 372 ELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGY 431
Query: 240 TNFDPQNSLI 249
T+FD Q I
Sbjct: 432 TDFDSQICFI 441
>gi|449439176|ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/250 (69%), Positives = 194/250 (77%), Gaps = 9/250 (3%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWR DVKP DIED+INSAAPGK+R SVSQVSR+FHPNFSAKWRRYLYI PLNDGEN E
Sbjct: 195 TWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP 254
Query: 66 SIDSEVEVENFHTSNNVG-KQSNG--CYENIENLLI---NDEGGFGSHEKPRNFTICRVN 119
+ VEN N V + SNG C + I + L+ ND+ S +KP+ F+I RVN
Sbjct: 255 DSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQE-LVSADKPQTFSITRVN 313
Query: 120 LLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCV 179
LL++LEGKLLSYK FARDTKASRN GPPTECF+YHARA E LPC + G GR VMCV
Sbjct: 314 QLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL--EQGVGRSVMCV 371
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
ELVANRFLRKMVRVLVAT +REAAAGA EDALL+LMDATCRRATAPPAPP+GL LVDVGY
Sbjct: 372 ELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGY 431
Query: 240 TNFDPQNSLI 249
T+FD Q I
Sbjct: 432 TDFDSQICFI 441
>gi|356511427|ref|XP_003524428.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
Length = 387
Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 165/245 (67%), Positives = 185/245 (75%), Gaps = 18/245 (7%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KDVKP DIEDAIN A PGK RVISVS+VSRVFHPNFSAKWRRYLYIFPL +G +Q
Sbjct: 157 TWKKDVKPRDIEDAINHATPGKFRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGRYTDQ 216
Query: 66 SIDSEVEVENFHTSNNVGKQSNGC-YENIENLLINDEGGFGSHEKPRNFTICRVNLLLQR 124
S N+ G N C Y I + DE G +K F+ +VN LL++
Sbjct: 217 S-------------NDNGHFYNSCKYNEIHDSASKDELENG--KKSYMFSTSKVNRLLRK 261
Query: 125 LEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVAN 184
LEGKLLSYK FARDTKASRN GPPTECF+YHARA E + P P DHGE KVMCVELVA+
Sbjct: 262 LEGKLLSYKMFARDTKASRNDGPPTECFVYHARAME-VKP-PTTDHGEETKVMCVELVAD 319
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
RFLRKMVRVLVAT +REAAAGA++DAL+KLMDATCRRATAPPAPP+GLCLVDVGYT FDP
Sbjct: 320 RFLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFDP 379
Query: 245 QNSLI 249
+ I
Sbjct: 380 KKCFI 384
>gi|294461715|gb|ADE76416.1| unknown [Picea sitchensis]
Length = 448
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 181/248 (72%), Gaps = 4/248 (1%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKD DIE IN+AA GK++V+S+S+VSR FHPNFSAKWRRYLYI PL DGE +
Sbjct: 201 TWRKDTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNKT 260
Query: 66 SID--SEVEVENFHTSNNVGKQSNGC-YENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
+D S V ++ ++ G QS N+E + I+ G + KP NF + VN LL
Sbjct: 261 VVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQLL 320
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDH-GEGRKVMCVEL 181
Q+LEG+ LSY+ FARDT+ASR+ GP TECF++HARA A LP DH +GR VMCVEL
Sbjct: 321 QQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVEL 380
Query: 182 VANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
VANRFLRKMVRVLVAT VREAAAGA D LLKLM ATCRRA+APPAPPEGLCLVD+GYT+
Sbjct: 381 VANRFLRKMVRVLVATAVREAAAGATPDNLLKLMHATCRRASAPPAPPEGLCLVDIGYTD 440
Query: 242 FDPQNSLI 249
+ +N LI
Sbjct: 441 INQENFLI 448
>gi|30692743|ref|NP_198390.2| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis thaliana]
gi|30725698|gb|AAP37871.1| At5g35400 [Arabidopsis thaliana]
gi|332006580|gb|AED93963.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 420
Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 158/255 (61%), Positives = 192/255 (75%), Gaps = 16/255 (6%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKD++P IEDAIN A GK+RV+S+S+VSR FHPNFSAKWRRYLYIFPL+D E +
Sbjct: 170 TWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRK 229
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCY--ENIENLLINDE---------GGFGSHEKPRNFT 114
S ++ ENF N KQ NG E E ++++++ EKP +F+
Sbjct: 230 SGENH---ENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFS 286
Query: 115 ICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR 174
+ +V+ LLQ L+GK+LSYK FARDTKA+RN GPPTECF+YHARA E L +D EGR
Sbjct: 287 VSKVDQLLQHLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSS--SDCVEGR 344
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+VMCVELVANRFLRKMVRVLVAT +REAAAGA++DALLKL++A+CRRATAPPAP EGLCL
Sbjct: 345 RVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCL 404
Query: 235 VDVGYTNFDPQNSLI 249
DVGYT+FDPQ SLI
Sbjct: 405 FDVGYTDFDPQTSLI 419
>gi|357520625|ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A [Medicago truncatula]
Length = 400
Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/246 (61%), Positives = 182/246 (73%), Gaps = 20/246 (8%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KD+KP +IEDAIN AAPGK+RV+SV +VSR FHPNFSAKWRRYLYIFPL DG++++Q
Sbjct: 170 TWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQ 229
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG--FGSHEKPRNFTICRVNLLLQ 123
S G C I N + + + K F + +VN LLQ
Sbjct: 230 S----------------GGNGESCDSFIYNEICDSDSKDELEKENKSYVFGVRKVNRLLQ 273
Query: 124 RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVA 183
+LEGK+LSYK FARDTKASRN GPPTECF++HARA EA LP + ++GE +VMC+ELVA
Sbjct: 274 KLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLP--ITENGEETRVMCIELVA 331
Query: 184 NRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
NRFLRKMVRVLVAT +REAAAGA++DALLKLMDATCRRATAPPAPP+GLCLVDVGY F+
Sbjct: 332 NRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLCLVDVGYAEFE 391
Query: 244 PQNSLI 249
+ I
Sbjct: 392 REKCFI 397
>gi|388514545|gb|AFK45334.1| unknown [Medicago truncatula]
Length = 400
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 151/246 (61%), Positives = 181/246 (73%), Gaps = 20/246 (8%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW+KD+KP +IEDAIN AAPGK+RV+SV +VSR FHPNFSAKWRRYLYIFPL DG++++Q
Sbjct: 170 TWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQ 229
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG--FGSHEKPRNFTICRVNLLLQ 123
S G C I N + + + K F + +VN LLQ
Sbjct: 230 S----------------GGNGESCDSFIYNEICDSDSKDELEKENKSYVFGVRKVNRLLQ 273
Query: 124 RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVA 183
+LEGK+LSYK FARDTKASRN GPPTECF++HARA EA LP + ++GE +VMC+ELVA
Sbjct: 274 KLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLP--ITENGEETRVMCIELVA 331
Query: 184 NRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
NRFLRKMVRVLVAT +REAAAGA++DALLKLMDATCRRATAPPAPP+GL LVDVGY F+
Sbjct: 332 NRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLGLVDVGYAEFE 391
Query: 244 PQNSLI 249
+ I
Sbjct: 392 REKCFI 397
>gi|334188023|ref|NP_001190423.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|332006581|gb|AED93964.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 471
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/304 (52%), Positives = 193/304 (63%), Gaps = 63/304 (20%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKD++P IEDAIN A GK+RV+S+S+VSR FHPNFSAKWRRYLYIFPL+D E +
Sbjct: 170 TWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRK 229
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCY--ENIENLLINDE---------GGFGSHEKPRNFT 114
S ++ ENF N KQ NG E E ++++++ EKP +F+
Sbjct: 230 SGENH---ENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFS 286
Query: 115 ICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPV------- 167
+ +V+ LLQ L+GK+LSYK FARDTKA+RN GPPTECF+YHARA E L V
Sbjct: 287 VSKVDQLLQHLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSVVHFVAWV 346
Query: 168 ------------------------------------------NDHGEGRKVMCVELVANR 185
+D EGR+VMCVELVANR
Sbjct: 347 FGGSIVLVILATEGSTLDLTDTKLYIASWFLIKRSCEFLFIASDCVEGRRVMCVELVANR 406
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA++DALLKL++A+CRRATAPPAP EGLCL DVGYT+FDPQ
Sbjct: 407 FLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFDVGYTDFDPQ 466
Query: 246 NSLI 249
SLI
Sbjct: 467 TSLI 470
>gi|326493306|dbj|BAJ85114.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 221
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 172/245 (70%), Gaps = 28/245 (11%)
Query: 5 DTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENRE 64
DTWRKD++P DI+D+IN AAP KI+ + VS+VSR FHPNFSAKWRRYLYIFPL++
Sbjct: 3 DTWRKDIQPGDIKDSINEAAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDED---- 58
Query: 65 QSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQR 124
K +G + + ++++ + ++ R+F + +V+ ++++
Sbjct: 59 ------------------AKPISG--DELSSMILENP----EYKASRSFDVAKVDKIIRQ 94
Query: 125 LEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVAN 184
LEGK+LSYK FARDT+ASR+ GP ECF++H+RA L + EG VMC+ELVAN
Sbjct: 95 LEGKMLSYKIFARDTQASRSDGPAAECFMFHSRAAVTKLYSADENCKEGATVMCIELVAN 154
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
RFLRKMVRVLVAT +REAAAGA+EDALL LMDATCRRATAPPAP EGLCLVDVGY +FD
Sbjct: 155 RFLRKMVRVLVATTIREAAAGANEDALLNLMDATCRRATAPPAPAEGLCLVDVGYEDFDE 214
Query: 245 QNSLI 249
Q I
Sbjct: 215 QRCFI 219
>gi|357123312|ref|XP_003563355.1| PREDICTED: tRNA pseudouridine synthase A-like [Brachypodium
distachyon]
Length = 410
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 167/245 (68%), Gaps = 29/245 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLN-DGENRE 64
TWR DVKPSDI+D IN AAP K++ + VS+VSR FHPNFSAKWR+YLYIFPL+ D E
Sbjct: 192 TWRNDVKPSDIKDTINEAAPDKLKSLFVSEVSRQFHPNFSAKWRKYLYIFPLDQDAEPIS 251
Query: 65 QSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQR 124
S + +EN NV C R+F + +V+ ++++
Sbjct: 252 GKELSSIILEN--PEYNVT-----C---------------------RSFDVAKVDKIIRK 283
Query: 125 LEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVAN 184
LEGKLLSYK FARDT+ASR+ GP TECF++H+RA + L + EG KVMC+ELVA+
Sbjct: 284 LEGKLLSYKIFARDTQASRSDGPATECFMFHSRAAVSKLYSADENFKEGTKVMCIELVAD 343
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
RFLRKMVRVLVAT +REAAAGA++D LL LM+ATCRRATAPPAP EGLCL DVGY +F+
Sbjct: 344 RFLRKMVRVLVATAIREAAAGAEDDVLLNLMEATCRRATAPPAPAEGLCLADVGYEDFNK 403
Query: 245 QNSLI 249
I
Sbjct: 404 HKCFI 408
>gi|194699074|gb|ACF83621.1| unknown [Zea mays]
Length = 414
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/244 (56%), Positives = 171/244 (70%), Gaps = 27/244 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVK DI+ AIN AAP K++ + VS+VSR FHPNF+AKWRRY+YIFPL++
Sbjct: 196 TWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE------ 249
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
D+++ + QS+ EN E+ + KP++F + +V+ +L+ L
Sbjct: 250 --DADLILGE--------AQSSKTLENSEHNI-----------KPQSFDVSKVDEILKPL 288
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
GK LSYK FARDT+ASR++GPPTECF++H+RA A L DH G VMCVELVANR
Sbjct: 289 AGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANR 348
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA DALL LM+AT RRATAPPAPPEGLCLVDVGY +FD Q
Sbjct: 349 FLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGLCLVDVGYEDFDKQ 408
Query: 246 NSLI 249
I
Sbjct: 409 RCFI 412
>gi|413943447|gb|AFW76096.1| pseudouridylate synthase [Zea mays]
Length = 422
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/244 (56%), Positives = 171/244 (70%), Gaps = 27/244 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVK DI+ AIN AAP K++ + VS+VSR FHPNF+AKWRRY+YIFPL++
Sbjct: 204 TWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE------ 257
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
D+++ + QS+ EN E+ + KP++F + +V+ +L+ L
Sbjct: 258 --DADLILGE--------AQSSKTLENSEHNI-----------KPQSFDVSKVDEILKPL 296
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
GK LSYK FARDT+ASR++GPPTECF++H+RA A L DH G VMCVELVANR
Sbjct: 297 AGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANR 356
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA DALL LM+AT RRATAPPAPPEGLCLVDVGY +FD Q
Sbjct: 357 FLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGLCLVDVGYEDFDKQ 416
Query: 246 NSLI 249
I
Sbjct: 417 RCFI 420
>gi|242096622|ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor]
gi|241917024|gb|EER90168.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor]
Length = 318
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 170/244 (69%), Gaps = 27/244 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVK DI+DAIN AAP K++ + VS+V R FHPNFSAKWRRY+YIFPL++
Sbjct: 100 TWRKDVKSGDIKDAINEAAPDKLKPLHVSEVPREFHPNFSAKWRRYMYIFPLDE------ 153
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
D+ + + H+S +L N E KP++F + +V+ +L+ L
Sbjct: 154 --DANLILGEAHSSK---------------ILENSEHNI----KPQSFDVAKVDKILKTL 192
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
GK LSYK FARDT+ASR++GPPTECF++H+RA A L D+ EG VMCVELVANR
Sbjct: 193 AGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANEDYKEGMMVMCVELVANR 252
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLVAT +REAAAGA +DALL LM+AT RRATAPPAPPEGLCL+DVGY +F Q
Sbjct: 253 FLRKMVRVLVATAIREAAAGAGDDALLNLMEATDRRATAPPAPPEGLCLIDVGYEDFTKQ 312
Query: 246 NSLI 249
I
Sbjct: 313 RCFI 316
>gi|125556371|gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
gi|125598125|gb|EAZ37905.1| hypothetical protein OsJ_22255 [Oryza sativa Japonica Group]
Length = 417
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 172/245 (70%), Gaps = 28/245 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVK SDI+DAIN AAP K+R + VSQVSR FHPNF+AKWRRYLYIFPL++
Sbjct: 198 TWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDE------ 251
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
+V+ K G NI KP++F + +V+ ++++L
Sbjct: 252 ------DVKLISGEEQSAKTVEGPECNI---------------KPQSFDVGKVDKIIRQL 290
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR-KVMCVELVAN 184
EGK LSYK FARDT+ASR++GPPTECF++H+RA A L + EG + +C+ELVAN
Sbjct: 291 EGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVAN 350
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
RFLRKMVRVLVAT +REAAAGA+EDALL LM+ATCRRATAPPAPP+GLCLVDVGY +F+
Sbjct: 351 RFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYEDFNR 410
Query: 245 QNSLI 249
Q I
Sbjct: 411 QRCFI 415
>gi|52075919|dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
Length = 495
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 171/241 (70%), Gaps = 28/241 (11%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TWRKDVK SDI+DAIN AAP K+R + VSQVSR FHPNF+AKWRRYLYIFPL++
Sbjct: 198 TWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDE------ 251
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
+V+ K G NI KP++F + +V+ ++++L
Sbjct: 252 ------DVKLISGEEQSAKTVEGPECNI---------------KPQSFDVGKVDKIIRQL 290
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR-KVMCVELVAN 184
EGK LSYK FARDT+ASR++GPPTECF++H+RA A L + EG + +C+ELVAN
Sbjct: 291 EGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVAN 350
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
RFLRKMVRVLVAT +REAAAGA+EDALL LM+ATCRRATAPPAPP+GLCLVDVGY +F+
Sbjct: 351 RFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYEDFNR 410
Query: 245 Q 245
Q
Sbjct: 411 Q 411
>gi|3047089|gb|AAC13601.1| contains similarity to pseudouridylate synthases [Arabidopsis
thaliana]
gi|10178103|dbj|BAB11490.1| unnamed protein product [Arabidopsis thaliana]
Length = 364
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/253 (50%), Positives = 160/253 (63%), Gaps = 39/253 (15%)
Query: 8 RKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSI 67
+K KP +E + A V +++QVSR FHPNFSAKWRRYLYIFPL+D E +S
Sbjct: 139 KKKCKP--LEGRVLVAGRTDKGVSALNQVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSG 196
Query: 68 DSEVEVENFHTSNNVGKQSNGCY--ENIENLLINDE---------GGFGSHEKPRNFTIC 116
++ ENF N KQ NG E E ++++++ EKP +F++
Sbjct: 197 ENH---ENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVS 253
Query: 117 RVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKV 176
+V+ LLQ L+GK+LSYK FARDTKA+RN GPPTECF+YHARA E
Sbjct: 254 KVDQLLQHLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAEI--------------- 298
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
R MVRVLVAT +REAAAGA++DALLKL++A+CRRATAPPAP EGLCL D
Sbjct: 299 --------RLSSSMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFD 350
Query: 237 VGYTNFDPQNSLI 249
VGYT+FDPQ SLI
Sbjct: 351 VGYTDFDPQTSLI 363
>gi|302802211|ref|XP_002982861.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii]
gi|300149451|gb|EFJ16106.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii]
Length = 289
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 139/244 (56%), Gaps = 55/244 (22%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW ++ K D++ A+NSA P +R +S S+V+R FHP FSAKWRRY+YIFPL
Sbjct: 89 TWMRECKEEDVKSAVNSAMPTILRAVSASEVNRDFHPIFSAKWRRYIYIFPLRS------ 142
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
DE + +V LL+ L
Sbjct: 143 ---------------------------------RDE-----------IDVSKVATLLRGL 158
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
EG LSY FARDTK +R+ GP T C +YHARA A LP P ++ VM VELVA+R
Sbjct: 159 EGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPVPNEEN-----VMVVELVADR 213
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLV+T ++EA AGA++DAL+ LM+ T RRA+APPAP GLCL +VGY N +
Sbjct: 214 FLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRASAPPAPAHGLCLAEVGYGNSQAR 273
Query: 246 NSLI 249
+ L+
Sbjct: 274 DCLL 277
>gi|302818580|ref|XP_002990963.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii]
gi|300141294|gb|EFJ08007.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii]
Length = 289
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 139/244 (56%), Gaps = 55/244 (22%)
Query: 6 TWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ 65
TW ++ K D++ A+NSA P +R +S S+V+R FHP FSAKWRRY+YIFPL
Sbjct: 89 TWMRECKEEDVKSAVNSAMPTILRAVSASEVNRDFHPIFSAKWRRYIYIFPLRS------ 142
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
DE + +V LL+ L
Sbjct: 143 ---------------------------------RDE-----------IDVSKVATLLRAL 158
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
EG LSY FARDTK +R+ GP T C +YHARA A LP P ++ VM VELVA+R
Sbjct: 159 EGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPFPNEEN-----VMVVELVADR 213
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQ 245
FLRKMVRVLV+T ++EA AGA++DAL+ LM+ T RRA+APPAP GLCL +VGY N +
Sbjct: 214 FLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRASAPPAPAHGLCLAEVGYGNSQAR 273
Query: 246 NSLI 249
+ L+
Sbjct: 274 DCLL 277
>gi|212723684|ref|NP_001131790.1| uncharacterized protein LOC100193161 [Zea mays]
gi|194692542|gb|ACF80355.1| unknown [Zea mays]
gi|223946927|gb|ACN27547.1| unknown [Zea mays]
gi|413943449|gb|AFW76098.1| pseudouridylate synthase isoform 1 [Zea mays]
gi|413943450|gb|AFW76099.1| pseudouridylate synthase isoform 2 [Zea mays]
Length = 173
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 112/141 (79%)
Query: 109 KPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVN 168
KP++F + +V+ +L+ L GK LSYK FARDT+ASR++GPPTECF++H+RA A L
Sbjct: 31 KPQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANE 90
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
DH G VMCVELVANRFLRKMVRVLVAT +REAAAGA DALL LM+AT RRATAPPAP
Sbjct: 91 DHKGGMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAP 150
Query: 229 PEGLCLVDVGYTNFDPQNSLI 249
PEGLCLVDVGY +FD Q I
Sbjct: 151 PEGLCLVDVGYEDFDKQRCFI 171
>gi|303285768|ref|XP_003062174.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456585|gb|EEH53886.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 554
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 105/234 (44%), Gaps = 61/234 (26%)
Query: 28 IRVISV-SQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQS 86
+RV S +V+ FH F+A WRRY+YI P+N R ID GK
Sbjct: 356 LRVTSAPEKVTERFHATFAATWRRYVYILPIN----RIDRID--------------GKTG 397
Query: 87 NGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIG 146
+G ++ + V+ +L++L GK + FARDT G
Sbjct: 398 DG-------------------DESYDVDPSAVDAMLRKLSGKTVDATAFARDTPQ----G 434
Query: 147 PPTECFIYHARATEAILPCPVNDHGE--------------GRKVMCVELVANRFLRKMVR 192
P+ C + ARA + +P V D E + V VELVA+RFLRK VR
Sbjct: 435 KPSSCRVKVARAFLSRVPSSVGDGDEEIRDEDETPTNPSTHQPVCVVELVADRFLRKQVR 494
Query: 193 VLVATLVREAAAGADEDALLKLMDATC-----RRATAPPAPPEGLCLVDVGYTN 241
VLVAT REA GA D LL L A R ATAPPAP GL VGY +
Sbjct: 495 VLVATAAREANCGATSDVLLALSRAGGSARERRMATAPPAPAVGLVFAGVGYGD 548
>gi|255081298|ref|XP_002507871.1| predicted protein [Micromonas sp. RCC299]
gi|226523147|gb|ACO69129.1| predicted protein [Micromonas sp. RCC299]
Length = 523
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 116/270 (42%), Gaps = 87/270 (32%)
Query: 13 PSDIEDAI---NSAAPGKIRVIS-VSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
P ++ DA+ + A G RV+ V +VS FH F A WRRY+YI P+ + E++
Sbjct: 290 PRNVRDALVAHPAHAAGAWRVVGDVEEVSDAFHATFCATWRRYVYILPMRSLGDEEENGL 349
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK 128
S V V+ T N +L LEGK
Sbjct: 350 SNVAVDPAAT----------------------------------------NAMLNALEGK 369
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPC----------------------- 165
+ FAR T ++ + CF+ ARA EA +P
Sbjct: 370 SMDMSAFARATPPGKD----STCFVKVARAFEATVPASKGAERGVGRGARRRKSAGFSED 425
Query: 166 --------------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDAL 211
P N E +V+ VELVA+RFLRKMVR LVAT VREAA GA D L
Sbjct: 426 GGLGVGGGGGGDGGPPNSTME--RVLVVELVADRFLRKMVRTLVATAVREAATGARGDVL 483
Query: 212 LKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
L+L A R ATAPPAPPEGL VGY N
Sbjct: 484 LRLARAGERAATAPPAPPEGLIFAGVGYGN 513
>gi|412992929|emb|CCO16462.1| predicted protein [Bathycoccus prasinos]
Length = 508
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 120/275 (43%), Gaps = 73/275 (26%)
Query: 16 IEDAINSAAP----GKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEV 71
I AIN + G ++ + +V+ +H FSA WRRY+YI P ++++D +
Sbjct: 247 IRRAINESTEVGKRGYLKAVECFRVNAEWHATFSATWRRYVYIIP-------KKTLDVDE 299
Query: 72 EVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLS 131
E ++ G ++E++ F H K ++ +L++ E K L
Sbjct: 300 VKEEL-------RKVEGGETDVEDV-----DAFAHHSKE-EIDCDLLDRMLRKFENKTLD 346
Query: 132 YKTFARDTKASRNIGPPTECFIYHARATEAILP-----CPVNDHGEGRK----------- 175
+ +ARDT G TEC + +ARA +P + +G+ +
Sbjct: 347 FYAYARDTPK----GKSTECKMLYARAKTISIPKFQMKAATSKYGKRYRDRRYKDTSLLY 402
Query: 176 -----------------------VMCVELVANRFLRKMVRVLVATLVREAAAGA------ 206
+ +ELVA+RFLRKMVR +V+T REA++
Sbjct: 403 DETAFHRATRTEKEEEEEEEPLECIAIELVADRFLRKMVRCIVSTACREASSSLSSSKKF 462
Query: 207 DEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
+EDALL L R A+APPAPP GL VGY N
Sbjct: 463 NEDALLDLARNRDRMASAPPAPPHGLLFCGVGYGN 497
>gi|224007493|ref|XP_002292706.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971568|gb|EED89902.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 437
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 52/217 (23%)
Query: 28 IRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSN 87
+R+ V +V FHP F A R Y+Y+
Sbjct: 267 LRIRDVERVKHDFHPTFDASCRAYIYLID------------------------------- 295
Query: 88 GCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGP 147
+ND+ K + ++N +L+ LEGK L Y + ++
Sbjct: 296 ----------VNDDASDAITPKITRHIVPKLNSVLKTLEGKELDYLAMSHGKVKTQT--- 342
Query: 148 PTECFIYHARATEAILPCPVNDHGEG---RKVMCVELVANRFLRKMVRVLVATLVREA-- 202
T C + HARA I+ N+ E ++ +C+ELV +RFLR+MVR+LVAT +REA
Sbjct: 343 -TLCTLLHARA--GIVEWKCNNDSESPKRKQAICIELVGDRFLRRMVRLLVATALREASG 399
Query: 203 AAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A G D++ALL ++ + R A APP+GL V GY
Sbjct: 400 ADGCDDNALLNILTSMDRTYRARAAPPDGLIFVGAGY 436
>gi|428169395|gb|EKX38329.1| hypothetical protein GUITHDRAFT_115478 [Guillardia theta CCMP2712]
Length = 321
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
KV+ VEL ANRFLR+MVR LVAT +R AA +E++ K+++A +APP P GLCL
Sbjct: 241 KVLVVELTANRFLRRMVRKLVATAIRAAAFPEEENSFTKILEACDSSRSAPPLPSIGLCL 300
Query: 235 VDVGYTNFDPQ 245
V VGY ++D +
Sbjct: 301 VGVGYDDYDKK 311
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLND 59
M W +K + + +NS P +RV+ R FH NF+A WR+Y Y+FPL +
Sbjct: 156 MFSFHCW-DAIKTCQLVEDMNSRLPRDVRVMP-----RSFHANFAATWRKYCYVFPLQE 208
>gi|397638246|gb|EJK72986.1| hypothetical protein THAOC_05423 [Thalassiosira oceanica]
Length = 417
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 59/241 (24%)
Query: 6 TWRK-DVKPSDIEDAINSAAPGK---IRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGE 61
TWR D + + D +N A + +R+ V V FHP F A+ R Y Y+
Sbjct: 226 TWRNLDDIETYVRDRVNKEAQERGLGLRIQDVESVDHSFHPTFDAQSRAYAYL------- 278
Query: 62 NREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLL 121
+ S+G ++ + ++N L
Sbjct: 279 --------------------IDTCSSGITLDV---------------------VVKLNQL 297
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVEL 181
L+ L GK L Y + ++ T C ++ ARAT I+ E R+ +C+EL
Sbjct: 298 LEPLVGKELDYFVLSYGKVKTQT----TTCTMHRARAT--IVEWKEGPSLERREAICIEL 351
Query: 182 VANRFLRKMVRVLVATLVREAAAG-ADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ +RFLR+MVR+LV T +REA G +L+ ++ + RR + APP GL V YT
Sbjct: 352 LGDRFLRRMVRLLVGTALREAHRGDGGAQSLIDILQSNDRRRRSRAAPPGGLIFVGAMYT 411
Query: 241 N 241
+
Sbjct: 412 D 412
>gi|414591010|tpg|DAA41581.1| TPA: hypothetical protein ZEAMMB73_361014 [Zea mays]
Length = 1147
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 27/103 (26%)
Query: 43 NFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEG 102
NF+AKWRRY+YIFPL++ D+++ + QS+ EN E+ +
Sbjct: 1051 NFAAKWRRYMYIFPLDE--------DADLILGE--------AQSSKTLENSEHNI----- 1089
Query: 103 GFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNI 145
KP++F + +V+ +LQ L GK LSYK FARDT+ASR++
Sbjct: 1090 ------KPQSFDVAKVDEILQPLAGKTLSYKMFARDTQASRSV 1126
>gi|145348169|ref|XP_001418528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578757|gb|ABO96821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 422
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 95/248 (38%), Gaps = 89/248 (35%)
Query: 7 WRKD--VKPSDIEDAIN-SAAPGK---IRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
W K + ++IE +N +APGK +RV V + FH F+AK RRY+Y P N
Sbjct: 193 WSKSDAISAAEIERLVNEDSAPGKAGLLRVSDVRETGSAFHATFAAKSRRYVYCLPKNQA 252
Query: 61 --ENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRV 118
E+R D + + I+ +L
Sbjct: 253 FRESRTPKADLDARI-------------------IDRILA-------------------- 273
Query: 119 NLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYH---ARATEAILPCPVNDHGEG-- 173
L++ + FAR T PP + + ARA EA LP P D +
Sbjct: 274 -ALVRECANAPIDMHAFARGT-------PPGKSSVVTFRVARAFEAKLPSPPGDGADSDN 325
Query: 174 -----------------------------RKVMCVELVANRFLRKMVRVLVATLVREAAA 204
+V+ +ELVA+RFLRK++R LVAT +REAA
Sbjct: 326 DSKVTAGVRRSKSRNDAHDDTIDITDIDADEVIVIELVADRFLRKLIRCLVATTIREAAV 385
Query: 205 GADEDALL 212
A +D +L
Sbjct: 386 FAGDDDVL 393
>gi|308805336|ref|XP_003079980.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116058437|emb|CAL53626.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 409
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 107/258 (41%), Gaps = 72/258 (27%)
Query: 10 DVKPSDIEDAINS-AAPGKIRVISVSQVSRV---FHPNFSAKWRRYLYIFPLNDGENREQ 65
+V IE +N +APGK V+ VS++ V FH FSA RRY+Y+ P
Sbjct: 190 EVTSERIERLVNEESAPGKAGVLRVSEIREVPSSFHATFSAFRRRYVYVLP--------- 240
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
+ G++ C +++ +N R+ L +
Sbjct: 241 ------------KTQKFGEERTPC-AHLDGATMN-----------------RILQPLAEV 270
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILP--------------------- 164
+G + FAR T R+ +E ARA +A LP
Sbjct: 271 DGPI-DMHAFARGTPPGRS----SEVNFSVARAFDARLPRVALDDPDTHAGIRRSRRDVD 325
Query: 165 CPVNDHG--EGRKVMCVELVANRFLRKMVRVLVATLVREAAA-GADEDALLKLMDATCRR 221
V+D E V+ +EL A+RFLRK+ R LVAT REAA + +D LL++ A RR
Sbjct: 326 ITVSDSAAAEDLDVVVIELEADRFLRKLARCLVATAAREAAGPPSSDDVLLRIARARDRR 385
Query: 222 ATAPPAPPEGLCLVDVGY 239
APPAP GL L Y
Sbjct: 386 LAAPPAPALGLVLAGASY 403
>gi|268318033|ref|YP_003291752.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252]
gi|262335567|gb|ACY49364.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252]
Length = 252
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 93/239 (38%), Gaps = 61/239 (25%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRR---YLYIFPLNDGENREQ 65
+ V P ++ ++N P I + SVS FH + A+WRR Y+ P +
Sbjct: 68 RPVDPERLQGSLNGLLPPSIAIRSVSLAPDDFHARYDARWRRYHYYVATVPCALERHLRW 127
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
+ + E + + C +LL G+H+
Sbjct: 128 YLRPAPDFERMNRA--------AC-----DLL-------GTHD----------------- 150
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
+ TF R A+RN C +Y AR P P + H E+VA+R
Sbjct: 151 ------FTTFCRTQTATRN----RTCTVYLARWVPD--PRPGDWH--------FEIVADR 190
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
FL MVR +V TL+ D AL +L+ A RR P AP GL L VGY + DP
Sbjct: 191 FLHGMVRAIVGTLIEIGRGQRDIAALPELLAARDRRLAGPAAPAHGLVLEAVGYED-DP 248
>gi|363900599|ref|ZP_09327104.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|395209079|ref|ZP_10398244.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
gi|361956473|gb|EHL09791.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|394705680|gb|EJF13206.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
Length = 253
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 50/229 (21%)
Query: 13 PSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVE 72
P + E A+NS P IRV+S + + FHP F+A + Y Y SID
Sbjct: 73 PENYERALNSYLPEDIRVLSAWKKTEDFHPRFTAHTKEYRY------------SIDR--- 117
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
+ N Y+ + + + P + I R + + + E S+
Sbjct: 118 ----------ARVENPLYQRL----------YYHYTFPLDLAIIREGIEILKGEHDFTSF 157
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
P + + A I + + GE + + N FL M+R
Sbjct: 158 AN------------PKAQTLLQGGSAVRCITDFRLEEEGE---YLHFTVKGNGFLYHMIR 202
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
+L TL+ AL +++ RR P AP +GLCL+ + Y +
Sbjct: 203 ILCGTLLEVGRGRISPSALSEILAGKDRRLAGPTAPAKGLCLIHLDYGD 251
>gi|440717190|ref|ZP_20897681.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SWK14]
gi|436437657|gb|ELP31275.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SWK14]
Length = 279
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 89/242 (36%), Gaps = 51/242 (21%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ D ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 74 VLPVWKADT--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 124
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 125 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 150
Query: 123 QRLEGKLLS---YKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCV 179
Q K + +K F + T A R P T I+ AR + P EG C
Sbjct: 151 QSAAAKFVGCHDFKAF-QGTGAER---PSTVRTIHSARWIPRVATGPTGAELEGEH-WCF 205
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ FL MVR L+ T++ D + +++ + R+ P APP+GL L V Y
Sbjct: 206 EIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGPTAPPQGLFLCRVDY 265
Query: 240 TN 241
+
Sbjct: 266 PD 267
>gi|307105485|gb|EFN53734.1| hypothetical protein CHLNCDRAFT_136316 [Chlorella variabilis]
Length = 353
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
++ A+N+ PG +R +QV R FH F+AKWRRYLY+ PL + EN
Sbjct: 60 EVVRALNAERPGLLRAWHAAQVPRSFHATFAAKWRRYLYLLPLREPEN 107
>gi|389576424|ref|ZP_10166452.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
gi|389311909|gb|EIM56842.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
Length = 271
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 137 RDTKASRNIGPPTECF--IYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVL 194
R +AS P E IY A T N ++ + N FL MVR+L
Sbjct: 157 RSFQASGETNPDKETVRTIYSASVTRG------NAADGNEDLITFRITGNGFLYNMVRIL 210
Query: 195 VATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
TL+ + + + K+MDA R A P APP+GL LV++ Y ++P
Sbjct: 211 AGTLIEIGRGKLEPEDMKKIMDARSRDAAGPTAPPQGLTLVEIRYPEWEP 260
>gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
gi|42559754|sp|Q7TU07.1|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
Length = 276
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 49/241 (20%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ D ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 71 VLPVWKADT--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 121
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 122 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 147
Query: 123 QRLEGKLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
Q K + F + T A R P T I+ AR + P EG C E
Sbjct: 148 QSAAAKFVGRHDFKAFQGTGAER---PSTVRTIHSARWIPRVATGPTGAELEGEH-WCFE 203
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ FL MVR L+ T++ + + +++ + R+ P APP+GL L V Y
Sbjct: 204 IDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGPTAPPQGLFLCRVDYP 263
Query: 241 N 241
+
Sbjct: 264 D 264
>gi|297567108|ref|YP_003686080.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946]
gi|296851557|gb|ADH64572.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946]
Length = 259
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 85/232 (36%), Gaps = 46/232 (19%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
+ P I A+N P +R ++ +V+ FH S WR Y Y
Sbjct: 71 IPPEKIPLALNGLLPPDLRALAAEEVAPEFHARKSCHWRAYRY----------------- 113
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
+ N T + + + P+ + + L+ L G+
Sbjct: 114 -RILNRKTPSALLRHYAWWI-------------------PQQLNLVAMRHALEHLVGEH- 152
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
+K FA K PT IY A T +L + + + + +E V + FLR
Sbjct: 153 DFKAFAVKEKR------PTVRRIYRAHLT--VLTPDIAQDAKNEREIHLEFVGSGFLRGQ 204
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
VR +V TLV D +L +L+ R P APP+GL V GY +
Sbjct: 205 VRSMVGTLVEVGLGKRDSQSLGELLRTGTRSQAGPTAPPQGLYFVGAGYAPW 256
>gi|193212885|ref|YP_001998838.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327]
gi|193086362|gb|ACF11638.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327]
Length = 238
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 82/219 (37%), Gaps = 56/219 (25%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSN 80
NS P IR+ S+ QV FH FSA R Y Y+ R +IDS
Sbjct: 76 NSLLPSTIRITSMRQVPESFHARFSATSREYRYVLL-----ERPSAIDSRFA-------- 122
Query: 81 NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTK 140
GC SH KP +L+ RL L+ FA +K
Sbjct: 123 -------GC----------------SHGKPDV-------VLMNRLAAMLVGTHDFAAFSK 152
Query: 141 ASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVR 200
+ + T C + AR + GR + ANRFLR MVR LVA ++
Sbjct: 153 ETPD-QQGTLCTVTEARWYRS-----------GR-FHVFRIEANRFLRSMVRFLVAGMIE 199
Query: 201 EAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ +++ R A+ PA P GL L V Y
Sbjct: 200 VGMGRLSEEEFSRMLVDGGRPASLVPADPAGLFLWKVRY 238
>gi|395225709|ref|ZP_10404225.1| pseudouridylate synthase I [Thiovulum sp. ES]
gi|394446109|gb|EJF06954.1| pseudouridylate synthase I [Thiovulum sp. ES]
Length = 199
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 55/225 (24%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
+++ +N P I++ ++++ S FH FSAK R Y YIF
Sbjct: 30 ELQKILNRKIPNSIKIQNLAETSSKFHARFSAKKRTYRYIFS------------------ 71
Query: 75 NFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKT 134
G+ SN E F S +NF + + + ++ +G + +K
Sbjct: 72 --------GESSNPFSEK-----------FISSIDLKNFDLQKAKIGIELFKG-IHDFKN 111
Query: 135 FARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVL 194
F+++ ++ T IY RA + R + N FLR VR +
Sbjct: 112 FSKEGSEPKS----TIREIYETRAYQY------------RSFYVFKFSGNSFLRSQVRFM 155
Query: 195 VATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VAT+++ A E+ + ++++ R+ PAP GL L + Y
Sbjct: 156 VATIIKFAKNELSENDIFQMLERN-RKICFKPAPANGLYLWKIQY 199
>gi|431792517|ref|YP_007219422.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782743|gb|AGA68026.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 269
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
+ + I A+NS P IRV+ +V+ FH FSA+W+RY Y
Sbjct: 81 IPAAKIPKAMNSLLPRDIRVVDAQEVADSFHARFSARWKRYDY----------------- 123
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
E++N HT +V K+ S P R+ Q + G+
Sbjct: 124 -EIDN-HTIADVFKR------------------LYSVHVPVPLDWQRMQQAAQLMVGR-- 161
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
+ KA ++G ++ F + C V +H ++ C + + FL M
Sbjct: 162 ------HNFKAFSSVGGNSKTF------ERTLYVCQVTEHQGQIRITC---IGDGFLYNM 206
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
VR++ TL+ +A+ +++ R+ P A P GL L V Y P++
Sbjct: 207 VRIIAGTLIYVGRKRIPPEAIPGILERGERKRGGPTAAPRGLTLSYVHYGEELPKD 262
>gi|449134302|ref|ZP_21769803.1| tRNA pseudouridine synthase A [Rhodopirellula europaea 6C]
gi|448886932|gb|EMB17320.1| tRNA pseudouridine synthase A [Rhodopirellula europaea 6C]
Length = 276
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 86/241 (35%), Gaps = 49/241 (20%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ D ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 71 VLPVWKADT--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 121
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 122 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 147
Query: 123 QRLEGKLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
Q K + F + T A R P T I+ AR + P EG C E
Sbjct: 148 QSAAAKFVGRHDFKAFQGTGAER---PSTVRTIHSARWIPRVATGPTGAELEGEH-WCFE 203
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ FL MVR L+ T++ + + ++ + R+ P APP+GL L V Y
Sbjct: 204 IDGEGFLYNMVRNLIGTMLEVGRGKRPLEWIDDVLASGDRKLAGPTAPPQGLFLCRVDYP 263
Query: 241 N 241
+
Sbjct: 264 D 264
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 161 AILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCR 220
++ C V + G V+ +E+V + FL MVR+L TLV A D + ++ A R
Sbjct: 169 SLYHCEVKEVNPG--VLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDR 226
Query: 221 RATAPPAPPEGLCLVDVGYTNFD 243
A PPEGL +V+VGYT ++
Sbjct: 227 SAAGKTFPPEGLVMVEVGYTPWE 249
>gi|421615050|ref|ZP_16056088.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH28]
gi|408494223|gb|EKJ98843.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH28]
Length = 276
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 86/241 (35%), Gaps = 49/241 (20%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ D ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 71 VLPVWKADA--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 121
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 122 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 147
Query: 123 QRLEGKLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
Q K + F + T A R P T I+ AR + P G C E
Sbjct: 148 QSAAAKFVGRHDFKAFQGTGAER---PSTVRKIHSARWIPRVATGPTGTELAGEH-WCFE 203
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ FL MVR L+ T++ D + +++ + R+ P APP+GL L V Y
Sbjct: 204 IDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGPTAPPQGLFLCRVDYP 263
Query: 241 N 241
+
Sbjct: 264 D 264
>gi|423317575|ref|ZP_17295480.1| tRNA pseudouridine synthase A [Bergeyella zoohelcum ATCC 43767]
gi|405580167|gb|EKB54239.1| tRNA pseudouridine synthase A [Bergeyella zoohelcum ATCC 43767]
Length = 248
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 55/220 (25%)
Query: 20 INSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTS 79
+NS P I V + V+ FH F A +R Y Y L+
Sbjct: 77 VNSFLPPDIAVHRIFPVTDAFHARFDATYRTYEYHISLD--------------------- 115
Query: 80 NNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDT 139
+N + D F ++ + ++N + L Y+ FA +
Sbjct: 116 --------------KNPFLTD---FAWQHWKKDLDMDKMNQAAE----ILFEYQDFACFS 154
Query: 140 KASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLV 199
K + T C I+ A+ + GR + + ANRFLR MVR +V TLV
Sbjct: 155 KVGAD-NKTTICQIFFAQWEQK----------NGRLIFTIS--ANRFLRNMVRAIVGTLV 201
Query: 200 REAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + K++D+ R AP +GL LVDVGY
Sbjct: 202 EVGRGKIELNDFRKIIDSKDRGKAGSSAPAQGLYLVDVGY 241
>gi|417304429|ref|ZP_12091450.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47]
gi|327539206|gb|EGF25829.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47]
Length = 276
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 49/241 (20%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ + ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 71 VLPAWKANT--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 121
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 122 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 147
Query: 123 QRLEGKLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
Q K + F + T A R P T I+ AR + P EG C E
Sbjct: 148 QSAAAKFVGRHDFKAFQGTGAER---PSTVRTIHLARWIPRVATGPTGAELEGEH-WCFE 203
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ FL MVR L+ T++ D + +++ + R+ P APP+GL L V Y
Sbjct: 204 IDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGPTAPPQGLFLCRVDYP 263
Query: 241 N 241
+
Sbjct: 264 D 264
>gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
Length = 250
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ N FL++MVR+L TL+ + D+L +++ R A APPEGLCL
Sbjct: 182 KALAVDVTGNGFLQQMVRILAGTLIEVGLGKREADSLEAVLELKERSAAGFTAPPEGLCL 241
Query: 235 VDVGY 239
++V Y
Sbjct: 242 MNVQY 246
>gi|325955163|ref|YP_004238823.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922]
gi|323437781|gb|ADX68245.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922]
Length = 248
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+ C E+ A+RFLR MVR +V TLV ++D R+ A APP+GL
Sbjct: 176 KDFFCFEITADRFLRNMVRAIVGTLVEVGLGKITPSDFNNIIDKKDRKFAAASAPPQGLF 235
Query: 234 LVDVGYTNFDPQNSLI 249
LV+V Y P+N I
Sbjct: 236 LVEVLY----PENLFI 247
>gi|345304322|ref|YP_004826224.1| tRNA pseudouridine synthase A [Rhodothermus marinus SG0.5JP17-172]
gi|345113555|gb|AEN74387.1| tRNA pseudouridine synthase A [Rhodothermus marinus SG0.5JP17-172]
Length = 252
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 132 YKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMV 191
+ TF R A+RN C +Y AR P P + H E+VA+RFL MV
Sbjct: 151 FTTFCRTQAATRN----RTCTVYLARWVPD--PRPGDWH--------FEIVADRFLHGMV 196
Query: 192 RVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
R +V TL+ D A+ +L+ A RR P AP GL L VGY DP
Sbjct: 197 RAIVGTLIEIGRGQRDIAAIPELLAARDRRLAGPAAPAHGLVLEAVGYAE-DP 248
>gi|313207118|ref|YP_004046295.1| tRNA pseudouridine synthase a [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|312446434|gb|ADQ82789.1| tRNA pseudouridine synthase A [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 246
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 84/220 (38%), Gaps = 55/220 (25%)
Query: 20 INSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTS 79
+NS P I V + +VS FH F A +R Y Y L +N T
Sbjct: 79 LNSFLPPDISVKRLFRVSSDFHARFDATYRTYEYYISLE---------------KNPFTQ 123
Query: 80 NNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDT 139
N+ G + NL +E C++ L Y F +
Sbjct: 124 NSAW----GYWRRPLNLEAMNEA-------------CKI----------LFEYTDFTSFS 156
Query: 140 KASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLV 199
K + + C IY A + EG ++ + ANRFLR MVR +V T+V
Sbjct: 157 KLNTDT-KTNLCEIYKAFWVQ-----------EGTELKFT-ISANRFLRNMVRAIVGTMV 203
Query: 200 REAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ L K+++A R A AP +GL LVDVGY
Sbjct: 204 DIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLFLVDVGY 243
>gi|406673213|ref|ZP_11080437.1| tRNA pseudouridine synthase A [Bergeyella zoohelcum CCUG 30536]
gi|405586675|gb|EKB60425.1| tRNA pseudouridine synthase A [Bergeyella zoohelcum CCUG 30536]
Length = 248
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y+ FA +K + T C I+ A+ + GR + + ANRFLR
Sbjct: 144 LFEYQDFACFSKVGAD-NKTTICQIFFAQWEQK----------NGRLIFTIS--ANRFLR 190
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TLV + K++D+ R AP +GL LVDVGY
Sbjct: 191 NMVRAIVGTLVEVGRGKIELSDFRKIIDSKDRGKAGSSAPAQGLYLVDVGY 241
>gi|399026060|ref|ZP_10728027.1| pseudouridylate synthase I [Chryseobacterium sp. CF314]
gi|398076755|gb|EJL67805.1| pseudouridylate synthase I [Chryseobacterium sp. CF314]
Length = 266
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
ANRFLR MVR +V T+V A + L K+++ R + AP GL LVDVGY
Sbjct: 205 ANRFLRNMVRAMVGTMVEVGAGKIKPEDLRKVIENKNRNSAGTSAPAHGLSLVDVGY 261
>gi|386320901|ref|YP_006017063.1| Pseudouridylate synthase [Riemerella anatipestifer RA-GD]
gi|416111716|ref|ZP_11592813.1| tRNA pseudouridine synthase A [Riemerella anatipestifer RA-YM]
gi|442315649|ref|YP_007356952.1| Pseudouridylate synthase [Riemerella anatipestifer RA-CH-2]
gi|315022484|gb|EFT35511.1| tRNA pseudouridine synthase A [Riemerella anatipestifer RA-YM]
gi|325335444|gb|ADZ11718.1| Pseudouridylate synthase [Riemerella anatipestifer RA-GD]
gi|441484572|gb|AGC41258.1| Pseudouridylate synthase [Riemerella anatipestifer RA-CH-2]
Length = 246
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 84/220 (38%), Gaps = 55/220 (25%)
Query: 20 INSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTS 79
+NS P I V + +VS FH F A +R Y Y L +N T
Sbjct: 79 LNSFLPPDISVKRLFRVSSDFHARFDATYRTYEYYISLE---------------KNPFTQ 123
Query: 80 NNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDT 139
N+ G + NL +E C++ L Y F +
Sbjct: 124 NSAW----GYWRRPLNLEAMNEA-------------CKI----------LFEYTDFTSFS 156
Query: 140 KASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLV 199
K + + C IY A + EG ++ + ANRFLR MVR +V T+V
Sbjct: 157 KLNTDT-KTNLCEIYKAFWVQ-----------EGAELKFT-ISANRFLRNMVRAIVGTMV 203
Query: 200 REAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ L K+++A R A AP +GL LVDVGY
Sbjct: 204 DIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLFLVDVGY 243
>gi|407451016|ref|YP_006722740.1| Pseudouridylate synthase [Riemerella anatipestifer RA-CH-1]
gi|403311999|gb|AFR34840.1| Pseudouridylate synthase [Riemerella anatipestifer RA-CH-1]
Length = 259
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ ANRFLR MVR +V T+V + L K+++A R A AP +GL LVDVGY
Sbjct: 193 ISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLFLVDVGY 251
>gi|294506655|ref|YP_003570713.1| tRNA pseudouridine synthase A [Salinibacter ruber M8]
gi|294342983|emb|CBH23761.1| tRNA pseudouridine synthase A [Salinibacter ruber M8]
Length = 265
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+V RFL MVR LV TLV DAL ++ A RRA P PPEGL L V
Sbjct: 184 VEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEGLVLEAVR 243
Query: 239 YTN--FD--PQNSLIP 250
Y FD P + L+P
Sbjct: 244 YEQPLFDDGPGDPLVP 259
>gi|83816613|ref|YP_444802.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855]
gi|123726203|sp|Q2S4S9.1|TRUA_SALRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83758007|gb|ABC46120.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855]
Length = 265
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+V RFL MVR LV TLV DAL ++ A RRA P PPEGL L V
Sbjct: 184 VEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEGLVLEAVR 243
Query: 239 YTN--FD--PQNSLIP 250
Y FD P + L+P
Sbjct: 244 YEQPLFDDGPGDPLVP 259
>gi|163750187|ref|ZP_02157429.1| tRNA pseudouridine synthase A [Shewanella benthica KT99]
gi|161330043|gb|EDQ01027.1| tRNA pseudouridine synthase A [Shewanella benthica KT99]
Length = 261
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ +ED ++ L+ R AP A P GL +VD
Sbjct: 181 LCVDIKANAFLHHMVRNIVGSLIEIGLGHQNEDWIVSLLALKDRSKAAPTAKPNGLYMVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VTY 243
>gi|332297806|ref|YP_004439728.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168]
gi|332180909|gb|AEE16597.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168]
Length = 257
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
+ +G K++ E+ AN FL KMVR +V +LV G D D +++ A RR+ P APP
Sbjct: 183 YADGDKLV-FEIAANAFLWKMVRSVVGSLVYYEQKGKDADFFAEILRARDRRSAGPTAPP 241
Query: 230 EGLCLVDVGY 239
+GL L +V +
Sbjct: 242 QGLFLWNVDF 251
>gi|335045936|ref|ZP_08538959.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759722|gb|EGL37279.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 253
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 50/229 (21%)
Query: 13 PSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVE 72
P + E A+NS P IRV+S + + FHP F+ + Y Y SID
Sbjct: 73 PENYERALNSYLPEDIRVLSAWKKTEDFHPRFTTHTKEYRY------------SIDRA-- 118
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
+EN L + + P + R + + + E S+
Sbjct: 119 -------------------RVENPLFQRL--YYHYTFPLDLVKIREGIEILKGEHDFTSF 157
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
P + + A I + + GE + + N FL M+R
Sbjct: 158 AN------------PKAQTLLQGGSAVRCITDFRLEEEGE---YLYFTVKGNGFLYHMIR 202
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
+L TL+ AL +++ RR P AP +GLCL+ + Y +
Sbjct: 203 ILCGTLLEVGRGRISPSALSEILAGKDRRLAGPTAPAKGLCLLHLDYGD 251
>gi|392408581|ref|YP_006445188.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
gi|390621717|gb|AFM22924.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
Length = 246
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G + ++ FLR MVR LV TLV A D A K++++ R + P APP
Sbjct: 178 GNSSDTLQFTIIGTGFLRYMVRSLVGTLVPVGAGKIDPTAFGKILESCDRSQSGPTAPPH 237
Query: 231 GLCLVDVGY 239
GLCL V Y
Sbjct: 238 GLCLALVEY 246
>gi|384246762|gb|EIE20251.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPL 57
DI IN+A PGK+R + V R FH F A WRRY+Y+ PL
Sbjct: 191 DIITCINAADPGKLRALHAQVVPRSFHATFQAVWRRYIYLLPL 233
>gi|159901453|ref|YP_001547700.1| tRNA pseudouridine synthase ACD [Herpetosiphon aurantiacus DSM 785]
gi|159894492|gb|ABX07572.1| tRNA pseudouridine synthase A [Herpetosiphon aurantiacus DSM 785]
Length = 272
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 81/229 (35%), Gaps = 61/229 (26%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF-----PLNDGENREQSIDSE 70
I AIN+ P I V ++ FH FSA+ R Y Y+F P R +D +
Sbjct: 76 IAKAINAITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSAPAPSATLSGRVLRLDHQ 135
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
++ + ++ L+ G+H+
Sbjct: 136 LDWAAMQAA-------------LDTLI-------GTHD---------------------- 153
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
FA A C + R E + GR V + L AN FL+ M
Sbjct: 154 ----FAAFAGAGHEGSTTRTCMLAQLRPAEWL----------GRPVTVLHLQANAFLKHM 199
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VR +V TL+ +A ++ + RR P APP+GL L +GY
Sbjct: 200 VRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAPPQGLYLESIGY 248
>gi|293402539|ref|ZP_06646674.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373453099|ref|ZP_09544997.1| tRNA pseudouridine synthase A [Eubacterium sp. 3_1_31]
gi|291304053|gb|EFE45307.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371964246|gb|EHO81776.1| tRNA pseudouridine synthase A [Eubacterium sp. 3_1_31]
Length = 251
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 66/234 (28%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+NS P IR+ SV QV+ FH F A +RY Y+ ND N + EN+
Sbjct: 78 ALNSLLPKDIRIQSVKQVTEAFHARFDAIGKRYDYLIS-NDILNPFK--------ENY-M 127
Query: 79 SNNVGKQSNGCYENIENLLI--NDEGGFGSHE----KPRNFTICRVNLLLQRLEGKLLSY 132
+ + K + +LI +D F S++ KPR TI R+ +L ++
Sbjct: 128 AKDAHKLDVAYMQECATVLIGTHDFTSFTSNKIDPRKPRVKTITRLEVLQEK-------- 179
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
DH M E N FLR MVR
Sbjct: 180 ------------------------------------DHVH----MIFE--GNGFLRYMVR 197
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
+L TL+ + + K+++A + A A P+GL LV V Y + + QN
Sbjct: 198 MLSQTLIEAGKHRITKADIKKMLEAKDKHACRYKAVPQGLYLVRVDYADDEEQN 251
>gi|383761336|ref|YP_005440318.1| tRNA pseudouridine synthase A [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381604|dbj|BAL98420.1| tRNA pseudouridine synthase A [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 279
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + AN FLR+MVR +V TL+ +A+ +++DA R APPAPP+GL L
Sbjct: 194 LVFTITANAFLRQMVRTIVGTLLAVGRGEIPAEAVKQMLDARDRSCAAPPAPPQGLILER 253
Query: 237 VGYTNF 242
V Y +
Sbjct: 254 VTYPSM 259
>gi|421263371|ref|ZP_15714424.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401689701|gb|EJS85091.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 264
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G + + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PE
Sbjct: 175 GRRGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPE 234
Query: 231 GLCLVDVGY-TNFD-PQNSLIP 250
GL LV+V Y T F PQN+L P
Sbjct: 235 GLYLVNVSYPTQFQLPQNALGP 256
>gi|40063298|gb|AAR38116.1| tRNA pseudouridine synthase A [uncultured marine bacterium 578]
Length = 247
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN FL MVR +V TL++ D + +L ++++ RR P A P+GL +
Sbjct: 182 LIVKIKANAFLHHMVRNIVGTLLKIGRGERDAEWMLSVLESKDRREAGPTAEPQGLYFIK 241
Query: 237 VGYTNF 242
Y NF
Sbjct: 242 AYYQNF 247
>gi|300776045|ref|ZP_07085904.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910]
gi|300505178|gb|EFK36317.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910]
Length = 250
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
ANRFLR MVR +V T+V + L K+++ R A AP GL LVDVGY
Sbjct: 192 ANRFLRNMVRAIVGTMVEIGTGKLKPEDLRKVIEDKNRNAAGTSAPGHGLYLVDVGY 248
>gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
gi|254789604|sp|A1QYG5.1|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
Length = 245
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 58/232 (25%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDS 69
++K +++ AINS IR+I + V F P F AK R+Y Y + LN+
Sbjct: 69 NIKLKNLKTAINSLLKDDIRIIKLKYVEDKFQPRFDAKRRKYSY-YILNN---------- 117
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKL 129
EN + G+ ++ + I R+N + + L G +
Sbjct: 118 ----ENHYPWE----------------------GYRAYYVKKKLNINRLNEMAEMLIG-I 150
Query: 130 LSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ TF+ RD S+ E IY+AR + K + E++ + FL
Sbjct: 151 HDFTTFSCIRDQTNSK----LKE--IYYARFKKK------------NKFIIFEIIGSSFL 192
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
KMVR +V ++ D K++++ R+ T AP + L L V Y
Sbjct: 193 WKMVRSIVGVMIDIEIKNEPVDTFKKILNSKNRKLTRKTAPAKALFLDKVFY 244
>gi|346311579|ref|ZP_08853582.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
gi|345900642|gb|EGX70462.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
Length = 278
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHAR-ATEAILPCPVNDHGEGRKVMCVE 180
++R L+ F K + +G PT F+ A+E L G +++
Sbjct: 158 MERAAACLVGEHDFKSFCKVASAVGKPTCRFVREVSFASERQL---------GEELIAFT 208
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL MVR +V +LV + DE+ L + + A R A P AP +GLC ++V Y
Sbjct: 209 ITGNAFLHSMVRTIVGSLVEVGSGRRDEEWLAQALAACDRLAAGPTAPAQGLCFMNVEYD 268
Query: 241 N 241
+
Sbjct: 269 D 269
>gi|15602502|ref|NP_245574.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378774345|ref|YP_005176588.1| tRNA pseudouridine synthase A [Pasteurella multocida 36950]
gi|383310280|ref|YP_005363090.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|417855702|ref|ZP_12500786.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|425063325|ref|ZP_18466450.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
gi|13431946|sp|P57861.1|TRUA_PASMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|12720912|gb|AAK02721.1| TruA [Pasteurella multocida subsp. multocida str. Pm70]
gi|338215648|gb|EGP01903.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|356596893|gb|AET15619.1| tRNA pseudouridine synthase A [Pasteurella multocida 36950]
gi|380871552|gb|AFF23919.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|404382888|gb|EJZ79345.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
Length = 264
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPEGLYL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V+V Y T F PQN+L P
Sbjct: 239 VNVSYPTQFQLPQNALGP 256
>gi|425065423|ref|ZP_18468543.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
gi|404383799|gb|EJZ80244.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
Length = 264
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAKKDRRLAAPTAKPEGLYL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V+V Y T F PQN+L P
Sbjct: 239 VNVSYPTQFQLPQNALGP 256
>gi|417850499|ref|ZP_12496399.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338220647|gb|EGP06108.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 264
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGQQPVEWIGWLLAQKDRRLAAPTAKPEGLYL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V+V Y T F PQN+L P
Sbjct: 239 VNVSYPTQFQLPQNALGP 256
>gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50]
gi|156864241|gb|EDO57672.1| tRNA pseudouridine synthase A [Clostridium sp. L2-50]
Length = 273
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR+L TLV E AG E A ++ ++ CR+ P APP+GLCL+ V Y
Sbjct: 217 FLQNMVRILTGTLV-EVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQGLCLMQVDY 270
>gi|365875644|ref|ZP_09415171.1| tRNA pseudouridine synthase A [Elizabethkingia anophelis Ag1]
gi|442586566|ref|ZP_21005393.1| tRNA pseudouridine synthase A [Elizabethkingia anophelis R26]
gi|365756679|gb|EHM98591.1| tRNA pseudouridine synthase A [Elizabethkingia anophelis Ag1]
gi|442563677|gb|ELR80885.1| tRNA pseudouridine synthase A [Elizabethkingia anophelis R26]
Length = 257
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + A+RFLR MVR +V T+V + + +++ R A AP GL LVD
Sbjct: 191 LVLTISADRFLRNMVRAIVGTMVDVGTGKIKPEDIHDIIEKKNRNAAGTSAPAHGLYLVD 250
Query: 237 VGYTNFD 243
VGY NFD
Sbjct: 251 VGY-NFD 256
>gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
Length = 292
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G + + + N FL MVR +V +LV A DE L + A RRA P AP GL
Sbjct: 217 GEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAPARGL 276
Query: 233 CLVDVGY 239
C +DV Y
Sbjct: 277 CFMDVAY 283
>gi|282899978|ref|ZP_06307939.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505]
gi|281195248|gb|EFA70184.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505]
Length = 292
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G ++ +E+ AN FL MVR+LV LV+ + + + R APP+
Sbjct: 187 GRQGSLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQ 246
Query: 231 GLCLVDVGYTNF 242
GLCL+ VGY++F
Sbjct: 247 GLCLLRVGYSDF 258
>gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279]
gi|210160151|gb|EEA91122.1| tRNA pseudouridine synthase A [Collinsella stercoris DSM 13279]
Length = 281
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G + + N FL MVR +V TLV A D +++++ A RRA P AP GL
Sbjct: 206 GEDHLAFTITGNAFLHSMVRTIVGTLVEVGAGRRDPAWVVEVLAACDRRAAGPTAPARGL 265
Query: 233 CLVDVGY 239
C +DV Y
Sbjct: 266 CFMDVAY 272
>gi|386859243|ref|YP_006271949.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
gi|384934124|gb|AFI30797.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
Length = 245
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 58/232 (25%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDS 69
++ +++ AINS IR+I + VS F P F AK R+Y Y + LN+
Sbjct: 69 NINLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY-YILNN---------- 117
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKL 129
EN +E + ++ + I R+N + + L G L
Sbjct: 118 ------------------------ENHYPWEE--YKAYYVRKKLNINRLNTMAEMLIG-L 150
Query: 130 LSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ TF+ RD S+ + + + K + E++ + FL
Sbjct: 151 HDFTTFSCIRDKTNSK------------------LKEIYLAKFKKKNKFIVFEIIGSSFL 192
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
KMVR +V T++ D L+K++ + R+ AP + L L V Y
Sbjct: 193 WKMVRSIVGTMIDIEIKNESVDTLIKILKSKNRKYARTTAPAKALFLDRVFY 244
>gi|269925860|ref|YP_003322483.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798]
gi|269789520|gb|ACZ41661.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798]
Length = 240
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+C+E+VA+ FLR+MVR +V+ L+ + LL+ ++ R+ PAP + L LV+
Sbjct: 175 LCIEIVADAFLRQMVRRIVSALIWVGTGKIEVVELLRAVEIKARQLLPGPAPAKNLTLVE 234
Query: 237 VGY 239
VGY
Sbjct: 235 VGY 237
>gi|406025475|ref|YP_006705776.1| tRNA pseudouridine synthase A [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404433074|emb|CCM10356.1| tRNA pseudouridine synthase A [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 253
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCR-RATAPPAPPEGLCLV 235
+ ++ ANRFLR MVR +VAT+++ A D L +L+ R R T PP+GL LV
Sbjct: 179 IIFQIKANRFLRGMVRTIVATILKVATGKMDIATLKELIRQKPRVRPTLALMPPDGLTLV 238
Query: 236 DVGY 239
+VGY
Sbjct: 239 EVGY 242
>gi|449128138|ref|ZP_21764385.1| tRNA pseudouridine synthase A [Treponema denticola SP33]
gi|448941471|gb|EMB22372.1| tRNA pseudouridine synthase A [Treponema denticola SP33]
Length = 264
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 66/237 (27%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K ++ S+ A+NS P IRV+ ++VS + H F+A R Y + + G+
Sbjct: 80 KSMRASNFLSALNSILPKDIRVMDAAEVSPLLHARFNALSRT--YRYKIKCGKT------ 131
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICR------VNLLL 122
+HE+P + I R +N +
Sbjct: 132 -----------------------------------IFAHEQPYTWHIRRYPDIAALNEMA 156
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
L G+L D A G + I +R + + ND+ + E+
Sbjct: 157 SCLSGEL--------DCTAFSAAGDQS---ISKSRYIKKAVFFIENDY------LIFEIC 199
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL KMVR +V TL+ GA + ++++ R P APP+GL L + Y
Sbjct: 200 ANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWSIEY 256
>gi|226227135|ref|YP_002761241.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27]
gi|226090326|dbj|BAH38771.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27]
Length = 259
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 63/230 (27%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLND------GENREQSIDS 69
+ A+N+ P I V + Q+ FHP +SA RRY Y+ ++ E ++
Sbjct: 78 LRRAMNALLPDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELASSPFRRRHEWALHR 137
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKL 129
++VE H E E L G H
Sbjct: 138 PLDVEALHG------------EAAELL--------GEH---------------------- 155
Query: 130 LSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRK 189
+++ FA A + C I+HA A +P EG V E+ ANRFL
Sbjct: 156 -TFRAFAIAHTAP--VDDHHRCIIHHA----AWVPR------EGGWVF--EVSANRFLHH 200
Query: 190 MVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR LV T+V A + +L+ T+PPAP GL L +V Y
Sbjct: 201 MVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAHGLSLREVTY 250
>gi|309789641|ref|ZP_07684222.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG-6]
gi|308228377|gb|EFO82024.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6]
Length = 262
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R ++ ++L AN FL+ MVRV+V T+V D +++ R+A P A GL
Sbjct: 183 RHLIAIDLAANAFLQHMVRVIVGTVVLVGRGKITPDGFQAILEGRDRKAAGPTAVAHGLT 242
Query: 234 LVDVGY 239
LV VGY
Sbjct: 243 LVSVGY 248
>gi|291524335|emb|CBK89922.1| pseudouridylate synthase I [Eubacterium rectale DSM 17629]
gi|291527615|emb|CBK93201.1| pseudouridylate synthase I [Eubacterium rectale M104/1]
Length = 244
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I C V+ G+ ++ + + N FL MVR++ TLV+ + DA+ ++ AT R
Sbjct: 169 IYDCTVSKAGD---IITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIAATDRA 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A P AP GL ++ + Y
Sbjct: 226 AAGPTAPAHGLTMIGLKY 243
>gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
Length = 249
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++LV N FLR VR +V TLV D D + L+ R+ P APP+GL V
Sbjct: 181 IVIDLVGNGFLRGQVRAMVGTLVEVGLGKRDPDVIAWLLAHGERKDAGPSAPPQGLYFVA 240
Query: 237 VGYTNFD 243
GY ++
Sbjct: 241 AGYAPWN 247
>gi|58040265|ref|YP_192229.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H]
gi|62901153|sp|Q5FPX3.1|TRUA_GLUOX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|58002679|gb|AAW61573.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H]
Length = 275
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 140 KASRNIGPPTECFIYHARATEAILPCP----VNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+A+ ++ P + + A A +A P +N H +G VM ++ A FL VR +
Sbjct: 165 QAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHRDGELVM-IDTKARSFLHHQVRNMA 223
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
TL+ + + ++++++A R A APPEGLCL+DVGY + DP N
Sbjct: 224 GTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLCLMDVGYPD-DPFN 273
>gi|427718730|ref|YP_007066724.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 7507]
gi|427351166|gb|AFY33890.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 7507]
Length = 284
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 79/232 (34%), Gaps = 53/232 (22%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
+ P +NS P I + + + V +H FSA +RRY Y
Sbjct: 79 IPPHKWATILNSYLPQDILIRASASVESRWHARFSAAYRRYRYTL--------------- 123
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
E+ NL ++ F H + L+ L GK
Sbjct: 124 ------------------FTEDRPNLFVSP---FSWHYYYATLDESLIQAALKPLLGK-- 160
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
D A G +A E I P + +E+ A+ FL M
Sbjct: 161 ------HDLAAFHRAGSKRSHSWVEVQAAECIRSGPF---------IHIEIQADGFLYGM 205
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
VR+LV LV+ + ++L R APP+GLCL+ VGY +F
Sbjct: 206 VRLLVGMLVQVGSGQRPLTNFIQLWQEKRREEVKYAAPPQGLCLLRVGYPDF 257
>gi|294141648|ref|YP_003557626.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12]
gi|293328117|dbj|BAJ02848.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12]
Length = 275
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ D +++L+ R AP A P GL +VD
Sbjct: 195 LCVDIKANAFLHHMVRNIVGSLIEIGQGHQQGDWIVELLALKDRSKAAPTAKPNGLYMVD 254
Query: 237 VGY 239
V Y
Sbjct: 255 VTY 257
>gi|408355518|ref|YP_006844049.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
gi|407726289|dbj|BAM46287.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
Length = 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 86/230 (37%), Gaps = 53/230 (23%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDS 69
D+ S+ + A+NS PG I V+ V QVS FH F A + Y+Y LN + I+
Sbjct: 69 DIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAIKKTYIYTI-LNSADANPFEIN- 126
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKL 129
+ +H K R V+L+ Q L+ L
Sbjct: 127 ----------------------------------YCAHVKER----LNVDLMNQALQ-DL 147
Query: 130 LSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRK 189
+ F A+ + IYHA VN+ + + N FL
Sbjct: 148 IGEHDFTAFCAANSYVKGDKIRTIYHASCQR------VNNK------VVFSVTGNGFLYN 195
Query: 190 MVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR++V TL+ + +++++ R APP+GL L V Y
Sbjct: 196 MVRIIVGTLIEIGLGQRPATDIKRIIESKDRTQAGKTAPPQGLYLNAVEY 245
>gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
gi|172044244|sp|A4J151.1|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
Length = 247
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+N PG I+V+ +V FH FSA + Y Y SI + FH
Sbjct: 81 ALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRY------------SIYHHRVMSPFHR 128
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
CY HE PR + + EG T+ D
Sbjct: 129 YY--------CY----------------HE-PRRLDVNAMQ------EGAAYLLGTY--D 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
K+ + G P + I + I PV + + L N FL MVR++ TL
Sbjct: 156 FKSFQAQGTPVKDTIRTIYRADIIEDAPV---------INLYLRGNGFLYNMVRIITGTL 206
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + ++K++++ R APP+GLCL++V Y
Sbjct: 207 LNIGFGKIKPEDMVKIIESKNRTLAGTTAPPQGLCLMEVEY 247
>gi|427736171|ref|YP_007055715.1| pseudouridylate synthase I [Rivularia sp. PCC 7116]
gi|427371212|gb|AFY55168.1| pseudouridylate synthase I [Rivularia sp. PCC 7116]
Length = 283
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL MVR+LV LV+ A + K+ R+ APP+GLCL+
Sbjct: 191 LVHIEIQADGFLYGMVRLLVGMLVQVATKERTIENFTKIWQQERRQEVKYAAPPQGLCLL 250
Query: 236 DVGYTNF 242
VGY F
Sbjct: 251 RVGYDEF 257
>gi|449105421|ref|ZP_21742125.1| tRNA pseudouridine synthase A [Treponema denticola ASLM]
gi|449116533|ref|ZP_21752981.1| tRNA pseudouridine synthase A [Treponema denticola H-22]
gi|451969725|ref|ZP_21922954.1| tRNA pseudouridine synthase A [Treponema denticola US-Trep]
gi|448953426|gb|EMB34217.1| tRNA pseudouridine synthase A [Treponema denticola H-22]
gi|448967124|gb|EMB47766.1| tRNA pseudouridine synthase A [Treponema denticola ASLM]
gi|451701484|gb|EMD55948.1| tRNA pseudouridine synthase A [Treponema denticola US-Trep]
Length = 268
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 66/237 (27%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K ++ S+ A+NS P IRV+ ++VS + H F+A R Y + + G+
Sbjct: 80 KSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRT--YRYKIKCGKT------ 131
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICR------VNLLL 122
+HE+P + I R +N +
Sbjct: 132 -----------------------------------IFAHEQPYTWHIRRYPDIAALNEMA 156
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
L G+L D A G + I +R + + ND+ + E+
Sbjct: 157 SCLSGEL--------DCTAFSAAGDQS---ISKSRYIKKAVFFIENDY------LIFEIC 199
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL KMVR +V TL+ GA + ++++ R P APP+GL L + Y
Sbjct: 200 ANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWSIEY 256
>gi|449108725|ref|ZP_21745366.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 33520]
gi|449119409|ref|ZP_21755805.1| tRNA pseudouridine synthase A [Treponema denticola H1-T]
gi|449121800|ref|ZP_21758146.1| tRNA pseudouridine synthase A [Treponema denticola MYR-T]
gi|448949241|gb|EMB30066.1| tRNA pseudouridine synthase A [Treponema denticola MYR-T]
gi|448950399|gb|EMB31221.1| tRNA pseudouridine synthase A [Treponema denticola H1-T]
gi|448961000|gb|EMB41708.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 33520]
Length = 268
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 66/237 (27%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K ++ S+ A+NS P IRV+ ++VS + H F+A R Y + + G+
Sbjct: 80 KSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRT--YRYKIKCGKT------ 131
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICR------VNLLL 122
+HE+P + I R +N +
Sbjct: 132 -----------------------------------IFAHEQPYTWHIRRFPDIAALNEMA 156
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
L G+L D A G + I +R + + ND+ + E+
Sbjct: 157 SCLSGEL--------DCTAFSAAGDQS---ISKSRYIKKAVFFIENDY------LIFEIC 199
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL KMVR +V TL+ GA + ++++ R P APP+GL L + Y
Sbjct: 200 ANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWSIEY 256
>gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1]
gi|238690561|sp|B5RLM0.1|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690579|sp|B5RQJ5.1|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1]
Length = 245
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 58/232 (25%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDS 69
++ +++ AINS IR+I + VS F P F AK R+Y Y + LN+
Sbjct: 69 NINLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY-YILNN---------- 117
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKL 129
EN +E + ++ + I R+N + + L G L
Sbjct: 118 ------------------------ENHYPWEE--YQAYYVRKKLNINRLNTMAEMLIG-L 150
Query: 130 LSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ TF+ RD S+ + + + K + E++ + FL
Sbjct: 151 HDFTTFSCIRDQTNSK------------------LKEIYLAKFKKKNKFIVFEIIGSSFL 192
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
KMVR +V T++ D +K++ + R+ AP + L L V Y
Sbjct: 193 WKMVRSIVGTMIDIEIKNESVDTFIKILKSKNRKYARTTAPAKALFLDRVFY 244
>gi|42527777|ref|NP_972875.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405]
gi|422341421|ref|ZP_16422362.1| tRNA pseudouridine synthase A [Treponema denticola F0402]
gi|449111228|ref|ZP_21747827.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 33521]
gi|449113952|ref|ZP_21750435.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35404]
gi|51316703|sp|Q73KE3.1|TRUA_TREDE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|41818605|gb|AAS12794.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405]
gi|325474992|gb|EGC78178.1| tRNA pseudouridine synthase A [Treponema denticola F0402]
gi|448958035|gb|EMB38774.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35404]
gi|448959491|gb|EMB40212.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 33521]
Length = 268
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 66/237 (27%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K ++ S+ A+NS P IRV+ ++VS + H F+A R Y + + G+
Sbjct: 80 KSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRT--YRYKIKCGKT------ 131
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICR------VNLLL 122
+HE+P + I R +N +
Sbjct: 132 -----------------------------------IFAHEQPYTWHIRRYPDIAALNEMA 156
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
L G+L D A G + I +R + + ND+ + E+
Sbjct: 157 SCLSGEL--------DCTAFSAAGDQS---ISKSRYIKKAVFFIENDY------LIFEIC 199
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL KMVR +V TL+ GA + ++++ R P APP+GL L + Y
Sbjct: 200 ANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWSIEY 256
>gi|417844005|ref|ZP_12490069.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21127]
gi|341948054|gb|EGT74690.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21127]
Length = 268
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L+D R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLDQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|282898331|ref|ZP_06306322.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9]
gi|281196862|gb|EFA71767.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9]
Length = 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ AN FL MVR+LV LV+ + + + R APP+GLCL+
Sbjct: 192 LVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCLL 251
Query: 236 DVGYTNF 242
VGY +F
Sbjct: 252 RVGYNDF 258
>gi|386813930|ref|ZP_10101154.1| tRNA pseudouridine synthase [planctomycete KSU-1]
gi|386403427|dbj|GAB64035.1| tRNA pseudouridine synthase [planctomycete KSU-1]
Length = 246
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + + A+ FL MVR +V TL+ +++ ++DA R+A P AP +GLCL
Sbjct: 180 KYIYFTIEADGFLYNMVRTIVGTLIEIGRGKIMVESIKDILDAKNRKAAGPTAPAKGLCL 239
Query: 235 VDVGY 239
++V Y
Sbjct: 240 MEVKY 244
>gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
Length = 249
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 52/224 (23%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
I+ IN G+I+++SV ++ R F+ F AK R YLYI + E E+
Sbjct: 78 IKRQINKNLYGEIKILSVEEIKREFNSRFDAKSRTYLYI------------MKKEEEITP 125
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
F ++ G I+N + I + +++ +GK + +F
Sbjct: 126 FESNYITG---------IKN----------------DINIEQFQKIMEIFKGK-YDFSSF 159
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+ KA RN T IY+ + C ++ E K + VE+ + FL+ M+R+++
Sbjct: 160 MKKDKAIRN----TMREIYN-------IKC---EYEEREKKIYVEICGSSFLKTMIRIMI 205
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + ED + ++ AP EGL L V Y
Sbjct: 206 GSAMAIYFGKEREDYIKMRLENPDADKPKILAPSEGLYLYRVDY 249
>gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 323
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 104 FGSHEKPRNFTICRVNLL--LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARAT-E 160
F +H K + I + QR +YK A + + N+ F A AT E
Sbjct: 146 FSAHSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGMHDFSAFANATRE 205
Query: 161 AILPCPVN-----DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLM 215
LP P+ D + ++ +E+ + FL + VR +VA L++ D D + ++
Sbjct: 206 DGLPDPLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMIL 265
Query: 216 DATCRRA----TAPPAPPEGLCLVDVGY 239
+ RR T PAPP GLCLV V Y
Sbjct: 266 ETKDRRVLAKYTTLPAPPHGLCLVSVKY 293
>gi|269122416|ref|YP_003310593.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386]
gi|268616294|gb|ACZ10662.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386]
Length = 244
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 84/231 (36%), Gaps = 54/231 (23%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K + P I+ +N A GKIRV + FH FSAK R YLYI L D
Sbjct: 68 KSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFSAKTRTYLYIMKLKD--------- 118
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK 128
E+ F +S E ++ ++ E G H
Sbjct: 119 ---EITPFESSYVSALDGKIIPEKLQKIM---EPFIGRH--------------------- 151
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
++ +F + K ++N P E I + R E K + +E+ FL+
Sbjct: 152 --NFDSFRKKDKDNKN--PERE--INNIRCYEE------------DKRLFIEIEGKSFLK 193
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
M+R+++ + + + D + +D AP EGL L V Y
Sbjct: 194 TMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLYLYKVNY 244
>gi|238925343|ref|YP_002938860.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238877019|gb|ACR76726.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 252
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I C V+ G+ ++ + + N FL MVR++ TLV+ + DA+ ++ T R
Sbjct: 177 IYDCTVSKAGD---IITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIATTDRA 233
Query: 222 ATAPPAPPEGLCLVDVGY 239
A P AP GL ++ + Y
Sbjct: 234 AAGPTAPAHGLTMIGLKY 251
>gi|443329320|ref|ZP_21057907.1| pseudouridylate synthase I [Xenococcus sp. PCC 7305]
gi|442791062|gb|ELS00562.1| pseudouridylate synthase I [Xenococcus sp. PCC 7305]
Length = 277
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 53/232 (22%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
+ S +N+ P I + S + VS +H FSA WRRY Y
Sbjct: 81 IPASKWAKIVNAKLPDDILIRSSAAVSSDWHACFSALWRRYRY----------------- 123
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
+T + + NL +N + + + P + LL+Q+ LL
Sbjct: 124 ----TIYT------------DKVANLFLN-QVSWHYYHAPLD------ELLIQQALETLL 160
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
A A R G + H + + C D ++ +E+ A+ FL M
Sbjct: 161 GKNNLA----AFRRTGSGRKHSWVHVQDVK----CHRQD-----ALLQLEIQADGFLYGM 207
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
VR+LV LV A +++ R AP +GLCL+ VGY F
Sbjct: 208 VRLLVGMLVEVGARKLSLSNFIQIWKNQQREEVKYSAPAKGLCLLRVGYPKF 259
>gi|291296648|ref|YP_003508046.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279]
gi|290471607|gb|ADD29026.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279]
Length = 263
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG + + +E V + FLR VR +V TLV D ++ L+ + R+ P AP +G
Sbjct: 191 EGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPAQG 250
Query: 232 LCLVDVGYTNF 242
L V GY +
Sbjct: 251 LYFVRAGYQPY 261
>gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638]
gi|397651422|ref|YP_006492003.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
gi|24638312|sp|Q8U2C1.1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM
3638]
gi|393189013|gb|AFN03711.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
Length = 266
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA-TAPPAPPEGLCL 234
V+ VE+ FL +MVR +V+ LV + E+ ++++++ ++ PPAPPEGL L
Sbjct: 159 VVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLNGKFEKSRKVPPAPPEGLLL 218
Query: 235 VDVGYTNFDPQ 245
D+ Y N + Q
Sbjct: 219 WDIKYENVEFQ 229
>gi|255536203|ref|YP_003096574.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10]
gi|255342399|gb|ACU08512.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10]
Length = 245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+RFLR MVR +V T+V L K+++A R AP +GL LVDVGY
Sbjct: 185 ADRFLRNMVRAIVGTMVEIGNGKIQPMDLRKIIEAKDRSFAGTSAPAQGLFLVDVGY 241
>gi|229844824|ref|ZP_04464962.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1]
gi|229812205|gb|EEP47896.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1]
Length = 269
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+D R+ AP A P+GL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|157374791|ref|YP_001473391.1| tRNA pseudouridine synthase A [Shewanella sediminis HAW-EB3]
gi|189030145|sp|A8FTU0.1|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3]
Length = 261
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V TL+ + + +L+D R AP A P GL +VD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAPTAKPNGLYMVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VTY 243
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
+D P + ++ IN P IR++ QV+ F F R Y YIFP++ +N E +
Sbjct: 97 RDTSPYNYQEMINGVLPWDIRILGFCQVNNNFSARFDCDSRVYKYIFPIDQIQNFEHNYF 156
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK 128
++ + N++ + + C + I G+H+ C++++ K
Sbjct: 157 PKLNI------NHIDQMNKSCKQFI-----------GTHDFR---VFCKMDI-------K 189
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
+T+ R R E F + + + + +ND G + ++ + FL
Sbjct: 190 NRPNQTYVRTIYDFR-----VEVF-NNNKISSSSFDNSINDTKLG----VITIIGSAFLW 239
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE---GLCLVDVGYTNF 242
VR++V L + + + KL+D + P P GL L D + +
Sbjct: 240 HQVRLMVGILFEISLGKIRSECITKLLDNYFDKDEIPFFPMASEIGLILWDCNFKEY 296
>gi|333980376|ref|YP_004518321.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823857|gb|AEG16520.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
Length = 248
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG++++ + + FL MVR++V TL+ D D + ++ A R P APPEG
Sbjct: 181 EGKELVHLTFRGDGFLYNMVRIMVGTLIEVGLGKRDPDDIPAILAARDRTRAGPTAPPEG 240
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 241 LCLERVEY 248
>gi|449129332|ref|ZP_21765563.1| tRNA pseudouridine synthase A [Treponema denticola SP37]
gi|448946174|gb|EMB27039.1| tRNA pseudouridine synthase A [Treponema denticola SP37]
Length = 268
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ AN FL KMVR +V TL+ GA + ++++ R P APP+GL L
Sbjct: 194 LIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWS 253
Query: 237 VGY 239
+ Y
Sbjct: 254 IEY 256
>gi|218289976|ref|ZP_03494153.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
LAA1]
gi|218239961|gb|EED07148.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
LAA1]
Length = 262
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E N FL+ MVR+LV TLV+ D + +++A RR APP GLCL +
Sbjct: 185 LHIEFEGNGFLQYMVRILVGTLVKVGRGKERPDRIPLILEARDRRLAGETAPPHGLCLWN 244
Query: 237 VGY 239
V Y
Sbjct: 245 VEY 247
>gi|449124321|ref|ZP_21760640.1| tRNA pseudouridine synthase A [Treponema denticola OTK]
gi|448942652|gb|EMB23546.1| tRNA pseudouridine synthase A [Treponema denticola OTK]
Length = 268
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ AN FL KMVR +V TL+ GA + ++++ R P APP+GL L
Sbjct: 194 LIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWS 253
Query: 237 VGY 239
+ Y
Sbjct: 254 IEY 256
>gi|449104529|ref|ZP_21741269.1| tRNA pseudouridine synthase A [Treponema denticola AL-2]
gi|448963548|gb|EMB44226.1| tRNA pseudouridine synthase A [Treponema denticola AL-2]
Length = 268
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ AN FL KMVR +V TL+ GA + ++++ R P APP+GL L
Sbjct: 194 LIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWS 253
Query: 237 VGY 239
+ Y
Sbjct: 254 IEY 256
>gi|386834240|ref|YP_006239555.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
gi|385200941|gb|AFI45796.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
Length = 272
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPEGLSL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V + Y T F PQN+L P
Sbjct: 239 VKMRYPTQFQLPQNALGP 256
>gi|258512640|ref|YP_003186074.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479366|gb|ACV59685.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 262
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E N FL+ MVR+LV TLV+ D + +++A RR APP GLCL +
Sbjct: 185 LHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCLWN 244
Query: 237 VGY 239
V Y
Sbjct: 245 VEY 247
>gi|145635070|ref|ZP_01790776.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA]
gi|145267678|gb|EDK07676.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA]
Length = 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVVY----PQKFDIP 250
>gi|270692650|ref|ZP_06222951.1| tRNA pseudouridine synthase A, partial [Haemophilus influenzae
HK1212]
gi|270316015|gb|EFA28055.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212]
Length = 115
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+D R+ AP A P+GL L
Sbjct: 41 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 100
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 101 VDVIY----PQKFDIP 112
>gi|312880338|ref|ZP_07740138.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260]
gi|310783629|gb|EFQ24027.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260]
Length = 260
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
FL MVR+LV TL A G + +A L L++ CR APP+GL VGY
Sbjct: 191 FLTNMVRILVGTLEGVARGGMEPEAFLNLLEGGCRSEAGRTAPPQGLFFWRVGYA 245
>gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
Length = 255
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 80/239 (33%), Gaps = 45/239 (18%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
M+ W + + +N P + VISV V H FSA R Y Y
Sbjct: 60 MVAHFDWEAPIDGQQLAYKLNRMLPRDVSVISVEAVENELHARFSATSRTYHYYM----- 114
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNL 120
H N ++ S+E P R+N
Sbjct: 115 ----------------HRGRNPFSRAY------------------SYEMPYELDFERMNE 140
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
+ L G+ +K F + ++ T C + AR +++ E + C
Sbjct: 141 AAKYLIGER-DFKCFCKAGGDNKT----TICNLTEARWQHCNTEIAIHE-AEKAEEWCFV 194
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ ANRFLR MVR +V TLV D K++D R P L L DV Y
Sbjct: 195 ITANRFLRNMVRAVVGTLVEVGRGRITIDEFRKIVDNGTRSDAGESMPGNALFLWDVTY 253
>gi|429766946|ref|ZP_19299177.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
gi|429182374|gb|EKY23480.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
Length = 262
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +E N FL MVR+L TL++ A D + L++A R A AP +G
Sbjct: 195 EDNNIIKIEYNGNGFLLNMVRILSGTLIKVAKGEIDIIDIKNLLEAKSRSDIAEKAPAKG 254
Query: 232 LCLVDVGY 239
LC+ +V Y
Sbjct: 255 LCMKEVHY 262
>gi|384136701|ref|YP_005519415.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290786|gb|AEJ44896.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 253
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E N FL+ MVR+LV TLV+ D + +++A RR APP GLCL +
Sbjct: 176 LHIEFEGNGFLQYMVRILVGTLVKVGRGKERPDRIPVILEARDRRLAGETAPPHGLCLWN 235
Query: 237 VGY 239
V Y
Sbjct: 236 VEY 238
>gi|339499824|ref|YP_004697859.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
gi|338834173|gb|AEJ19351.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
Length = 250
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
+ E+ AN FL KMVR +V +L+ G + + KLM++ P APPEGL L
Sbjct: 184 TLLFEITANAFLWKMVRSIVGSLLYYEERGYSVEQVQKLMNSRDHTLAGPTAPPEGLFLW 243
Query: 236 DVGY 239
++ Y
Sbjct: 244 NIDY 247
>gi|145639258|ref|ZP_01794864.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII]
gi|145271561|gb|EDK11472.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII]
gi|309751137|gb|ADO81121.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2866]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
gi|238689303|sp|B2S1K1.1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
Length = 245
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 58/234 (24%)
Query: 8 RKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSI 67
R ++K +++ AINS IR+I + V+ F P F+AK R+Y Y + LN+
Sbjct: 67 RINIKLKNLKTAINSLLRKDIRIIKLKYVADEFQPRFNAKRRKYSY-YILNN-------- 117
Query: 68 DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEG 127
EN + G+ ++ + I R+N + + L G
Sbjct: 118 ------ENHYPWE----------------------GYQAYYVKKKLNINRLNEMAKMLIG 149
Query: 128 KLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
+ + TF+ +D S+ IY AR + K++ E++ +
Sbjct: 150 -IHDFTTFSCIKDQTNSKLKK------IYFAR------------FKKKNKLIIFEIIGSS 190
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KMVR +V T++ K++++ R+ T AP + L L V Y
Sbjct: 191 FLWKMVRSIVGTIIDIEIKNEPVYTFKKILNSKNRKFTRTTAPAKALFLDKVFY 244
>gi|260582150|ref|ZP_05849944.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127]
gi|260094782|gb|EEW78676.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|145633047|ref|ZP_01788779.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655]
gi|144986273|gb|EDJ92852.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|407976011|ref|ZP_11156913.1| tRNA pseudouridine synthase A [Nitratireductor indicus C115]
gi|407428512|gb|EKF41194.1| tRNA pseudouridine synthase A [Nitratireductor indicus C115]
Length = 247
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V A FL VR LV TL R G D D + + ++A R+A P APP GL L+ V
Sbjct: 187 VRASARSFLHNQVRSLVGTLKRVGEGGWDADDVTRALEARDRKACGPVAPPYGLYLIKVD 246
Query: 239 Y 239
Y
Sbjct: 247 Y 247
>gi|270605639|ref|ZP_06221621.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212]
gi|270318160|gb|EFA29385.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212]
Length = 131
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+D R+ AP A P+GL L
Sbjct: 41 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 100
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 101 VDVIY----PQKFDIP 112
>gi|378697886|ref|YP_005179844.1| pseudouridylate synthase I [Haemophilus influenzae 10810]
gi|301170402|emb|CBW30008.1| pseudouridylate synthase I [Haemophilus influenzae 10810]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|68249766|ref|YP_248878.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP]
gi|81335806|sp|Q4QL79.1|TRUA_HAEI8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|68057965|gb|AAX88218.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|145637534|ref|ZP_01793192.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH]
gi|145269340|gb|EDK09285.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH]
Length = 269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|356960566|ref|ZP_09063548.1| tRNA pseudouridine synthase A [gamma proteobacterium SCGC
AAA001-B15]
Length = 247
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FLR MVR +V TL++ + D +L ++++ R+ P A P+GL V
Sbjct: 182 ILIKIKANAFLRHMVRNIVGTLLKIGRDEREVDWMLSVLESKDRKQAGPTAEPQGLYFVK 241
Query: 237 VGYTNF 242
Y +F
Sbjct: 242 AYYHDF 247
>gi|256370635|ref|YP_003108460.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM]
gi|256009427|gb|ACU52787.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM]
Length = 270
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+ ++ + ANRFLR MVR LV TL+ +K+++A R AP +GL
Sbjct: 200 KNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIKDFIKIIEAKNRNLAGITAPAKGLF 259
Query: 234 LVDVGY 239
L+ + Y
Sbjct: 260 LIKINY 265
>gi|319776538|ref|YP_004139026.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047]
gi|329124048|ref|ZP_08252595.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116]
gi|317451129|emb|CBY87362.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047]
gi|327467473|gb|EGF12971.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|145627788|ref|ZP_01783589.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21]
gi|144979563|gb|EDJ89222.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|427732039|ref|YP_007078276.1| pseudouridylate synthase I [Nostoc sp. PCC 7524]
gi|427367958|gb|AFY50679.1| pseudouridylate synthase I [Nostoc sp. PCC 7524]
Length = 301
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL MVR+LV LV+ + + +L R APP+GLCL+
Sbjct: 192 IHIEIQADGFLYGMVRLLVGMLVQVGSGQRTVASFTELWKEQRREEVKYAAPPQGLCLLR 251
Query: 237 VGYTNF 242
VGY +F
Sbjct: 252 VGYPDF 257
>gi|148828368|ref|YP_001293121.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG]
gi|166228702|sp|A5UIY2.1|TRUA_HAEIG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148719610|gb|ABR00738.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229557997|sp|B2A4Q5.1|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 253
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
GE ++ +++ N FL KMVR+LV TL++ + +A+ K + R P A P+
Sbjct: 184 GEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTASPQ 243
Query: 231 GLCLVDVGY 239
GL L + Y
Sbjct: 244 GLVLQQIWY 252
>gi|373468090|ref|ZP_09559373.1| tRNA pseudouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371756483|gb|EHO45290.1| tRNA pseudouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|417838978|ref|ZP_12485192.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19107]
gi|341955793|gb|EGT82243.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19107]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|319897314|ref|YP_004135510.1| tRNA pseudouridine synthase a [Haemophilus influenzae F3031]
gi|317432819|emb|CBY81184.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3031]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|333995058|ref|YP_004527671.1| tRNA pseudouridine synthase A [Treponema azotonutricium ZAS-9]
gi|333736875|gb|AEF82824.1| tRNA pseudouridine synthase A [Treponema azotonutricium ZAS-9]
Length = 248
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ AN FL KMVR +V TL+ G + ++++ + R P APP+GL L
Sbjct: 183 LVFEITANAFLWKMVRSIVGTLLYYEEKGLGPQSFVEILASKNRSLAGPTAPPQGLFLWK 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IDY 245
>gi|145630935|ref|ZP_01786711.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021]
gi|144983402|gb|EDJ90878.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|419839016|ref|ZP_14362434.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus HK386]
gi|386909727|gb|EIJ74391.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus HK386]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|145641169|ref|ZP_01796749.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021]
gi|145274006|gb|EDK13872.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 269
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|340027766|ref|ZP_08663829.1| tRNA pseudouridine synthase A [Paracoccus sp. TRP]
Length = 260
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 89/242 (36%), Gaps = 62/242 (25%)
Query: 9 KDVKPSDIEDAIN-SAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF-----PLNDGEN 62
+D P + +A+N P + +++V++V FH FSA RRYL+ PL
Sbjct: 71 RDWDPFRLSEALNWHLKPAPVAILAVARVDDEFHARFSAFERRYLFRLISRRAPLTHDRG 130
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
R + +++ E +LL G H +FT R +
Sbjct: 131 RAWQVSHPLDLAAMR-------------EGAAHLL-------GRH----DFTTFRSTMCQ 166
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
+ K L T TEA +P +GR+ L
Sbjct: 167 AKSPVKTLDELTI-----------------------TEAEIP-------QGREYRFT-LR 195
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
A FL VR +V TL R A D + + ++A R A P PP+GL L V Y
Sbjct: 196 ARSFLHNQVRSIVGTLERVGAGSWPPDRVAEALEARDRAACGPVCPPQGLYLTGVSYPQ- 254
Query: 243 DP 244
DP
Sbjct: 255 DP 256
>gi|342903852|ref|ZP_08725655.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21621]
gi|341954300|gb|EGT80788.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21621]
Length = 269
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLMEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|186684484|ref|YP_001867680.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102]
gi|186466936|gb|ACC82737.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102]
Length = 282
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL MVR+LV LV + + +L R APP+GLCL+
Sbjct: 192 IHIEIQADGFLYGMVRLLVGMLVEVGSGQRTLSSFTELWKEQRREEVKYAAPPQGLCLLR 251
Query: 237 VGYTNF 242
VGY +F
Sbjct: 252 VGYPDF 257
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I C V +G ++ + + N FL MVR++ TL+R D + +++
Sbjct: 166 TTRTIYSCEVEK--DGNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGK 223
Query: 218 TCRRATAPPAPPEGLCLVDVGY 239
R A P AP GL ++ + Y
Sbjct: 224 KDRTAAGPTAPAHGLTMMGIEY 245
>gi|431797099|ref|YP_007224003.1| pseudouridylate synthase I [Echinicola vietnamensis DSM 17526]
gi|430787864|gb|AGA77993.1| pseudouridylate synthase I [Echinicola vietnamensis DSM 17526]
Length = 251
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + ANRFLR MVR +V TLV D +++++ R APP GL L
Sbjct: 183 LVFHITANRFLRGMVRAIVGTLVEVGKGQLDLTGFQRILESKDRGKAGVAAPPHGLFLSK 242
Query: 237 VGY 239
V Y
Sbjct: 243 VTY 245
>gi|374603290|ref|ZP_09676272.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
gi|374391159|gb|EHQ62499.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
Length = 273
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 153 IYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALL 212
IY AR P +H GR + V + N FL MVR++ TL+ D ++
Sbjct: 170 IYEARLEHE----PNANHEPGRGRIHVFVTGNGFLYNMVRIIAGTLIWVGEGKFSPDDIV 225
Query: 213 KLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
++ A R + P A P GL L V Y D + +P
Sbjct: 226 PILAAKNRESAGPTAVPHGLTLWSVEYDGEDRMDQAVP 263
>gi|281202734|gb|EFA76936.1| hypothetical protein PPL_09688 [Polysphondylium pallidum PN500]
Length = 275
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G +++ +E+ A FL VR++V+TL R + D L +L+DA R+ P APP
Sbjct: 189 GVNPQLIGIEVKARAFLHNQVRIMVSTLERVGSHQMSLDQLQELIDAKDRQKAPPTAPPY 248
Query: 231 GLCLVDVGY 239
L L V Y
Sbjct: 249 PLTLTKVSY 257
>gi|325107879|ref|YP_004268947.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305]
gi|324968147|gb|ADY58925.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305]
Length = 278
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 153 IYHARATEAILPCPVNDHGEGRKVM------CV--ELVANRFLRKMVRVLVATLVREAAA 204
+ H R EA CP+ G G + CV ++ A+ FL MVR ++ TL++
Sbjct: 172 VLHCRVNEAET-CPLWQPGLGGQRFGQAVGRCVYLDIAADGFLYNMVRAIMGTLLKIGIG 230
Query: 205 GADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT-NFD 243
A ++++A RR P APPEGL L+ V Y +FD
Sbjct: 231 SWPASAGKEVLEAMDRRVAGPTAPPEGLYLMHVEYDRDFD 270
>gi|313676221|ref|YP_004054217.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126]
gi|312942919|gb|ADR22109.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126]
Length = 247
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 100 DEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARAT 159
D+ F + E I ++NL + KLL+Y+ F +K T+ F ++
Sbjct: 123 DQAYFFTQE----LAIEKMNLAAE----KLLNYQDFESFSKVK------TDVFTFNCSIF 168
Query: 160 EAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC 219
EAI V+ + + ANRFLR MVR +V TL+ + +++ A
Sbjct: 169 EAIWKQEVDS-------LVFHIKANRFLRGMVRAIVGTLLDVGQHKISIENFEEIIKAKN 221
Query: 220 RRATAPPAPPEGLCLVDVGY 239
R++ P GL L +V Y
Sbjct: 222 RKSAGRAVPAHGLYLTEVQY 241
>gi|291567810|dbj|BAI90082.1| tRNA pseudouridine synthase A [Arthrospira platensis NIES-39]
Length = 278
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ A+ FL M+R+LV LV+ GA E +L D R APP+GLCL+
Sbjct: 189 IEVQASGFLYGMMRLLVGLLVQ---VGAKERSLENFQDIWVNERREIVKSAAPPQGLCLL 245
Query: 236 DVGYTNF 242
VGY NF
Sbjct: 246 RVGYPNF 252
>gi|409991895|ref|ZP_11275119.1| tRNA pseudouridine synthase A [Arthrospira platensis str. Paraca]
gi|409937225|gb|EKN78665.1| tRNA pseudouridine synthase A [Arthrospira platensis str. Paraca]
Length = 278
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ A+ FL M+R+LV LV+ GA E +L D R APP+GLCL+
Sbjct: 189 IEVQASGFLYGMMRLLVGLLVQ---VGAKERSLENFQDIWVNERREIVKSAAPPQGLCLL 245
Query: 236 DVGYTNF 242
VGY NF
Sbjct: 246 RVGYPNF 252
>gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|422719066|ref|ZP_16775716.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
Length = 246
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + +GE ++ V N FL KMVR+LV TL+ E AG E A++ + A
Sbjct: 167 TTRTIEKITIERNGE---MLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFA 222
Query: 218 T-CRRATAPPAPPEGLCLVDVGY 239
T R AP +GL L +V Y
Sbjct: 223 TKVREGAGETAPAQGLFLDEVYY 245
>gi|421858395|ref|ZP_16290665.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410832074|dbj|GAC41102.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 273
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 160 EAILPCPVN-DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT 218
EA L +N +H GR + V + N FL MVR++ TL+ D ++ ++ A
Sbjct: 172 EARLEHELNVNHEPGRGRIHVLVTGNGFLYNMVRIIAGTLIWVGEGKFSPDDIVPILTAK 231
Query: 219 CRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
R + P A P GL L V Y D + ++P
Sbjct: 232 NRESAGPTAVPHGLTLWRVEYDGDDRMDQVVP 263
>gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|422723100|ref|ZP_16779642.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|424672437|ref|ZP_18109400.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|402355807|gb|EJU90568.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
Length = 246
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + +GE ++ V N FL KMVR+LV TL+ E AG E A++ + A
Sbjct: 167 TTRTIEKITIERNGE---MLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFA 222
Query: 218 T-CRRATAPPAPPEGLCLVDVGY 239
T R AP +GL L +V Y
Sbjct: 223 TKVREGAGETAPAQGLFLDEVYY 245
>gi|422698342|ref|ZP_16756255.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
gi|315173151|gb|EFU17168.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
Length = 877
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
K++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 812 KMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 870
Query: 234 LVDVGY 239
L +V Y
Sbjct: 871 LDEVYY 876
>gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 246
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + +GE ++ V N FL KMVR+LV TL+ E AG E A++ + A
Sbjct: 167 TTRTIEKITIERNGE---MLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFA 222
Query: 218 T-CRRATAPPAPPEGLCLVDVGY 239
T R AP +GL L +V Y
Sbjct: 223 TKVREGAGETAPAQGLFLDEVYY 245
>gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758]
gi|225208668|gb|EEG91022.1| tRNA pseudouridine synthase A [Coprococcus comes ATCC 27758]
Length = 256
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++ LVR + + + +L++ R A APP+GLCL++
Sbjct: 190 ITIRITGNGFLYNMVRIIAGVLVRVGRGFYEPEKVKELLEGGERTREAVTAPPQGLCLME 249
Query: 237 VGYTN 241
+ Y N
Sbjct: 250 IRYQN 254
>gi|453330528|dbj|GAC87274.1| tRNA pseudouridine synthase A [Gluconobacter thailandicus NBRC
3255]
Length = 259
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+N H EG V+ V+ A FL VR +V +LV + + + +++A R A P
Sbjct: 182 LNIHREGELVI-VDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEARNRCAAGPT 240
Query: 227 APPEGLCLVDVGY 239
+PP+GLCL VGY
Sbjct: 241 SPPDGLCLTGVGY 253
>gi|209527116|ref|ZP_03275630.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328]
gi|376007802|ref|ZP_09784987.1| tRNA-pseudouridine synthase A [Arthrospira sp. PCC 8005]
gi|423062908|ref|ZP_17051698.1| tRNA pseudouridine synthase A [Arthrospira platensis C1]
gi|209492456|gb|EDZ92797.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328]
gi|375323778|emb|CCE20740.1| tRNA-pseudouridine synthase A [Arthrospira sp. PCC 8005]
gi|406715487|gb|EKD10641.1| tRNA pseudouridine synthase A [Arthrospira platensis C1]
Length = 278
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ A+ FL M+R+LV LV+ GA E +L D R APP+GLCL+
Sbjct: 189 IEVQASGFLYGMMRLLVGLLVQ---VGAGERSLENFQDIWVNERREIVKSAAPPQGLCLL 245
Query: 236 DVGYTNF 242
VGY NF
Sbjct: 246 RVGYPNF 252
>gi|71280165|ref|YP_270466.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H]
gi|123760979|sp|Q47XK4.1|TRUA_COLP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71145905|gb|AAZ26378.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H]
Length = 259
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
A I C V G+ + V++ AN FL MVR +V +L+R + + +++ A
Sbjct: 165 AVRTIKHCRVTRQGD---YLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLA 221
Query: 218 TCRRATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
R APPEGL VDV Y NF+ P++ L P
Sbjct: 222 KNRCVAGVTAPPEGLYFVDVDYPENFELPKSRLGP 256
>gi|406671714|ref|ZP_11078953.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
gi|405580964|gb|EKB55023.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
Length = 263
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 56/232 (24%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDS 69
D+ P I +A+N+ IRV++ ++VS FH + + Y Y ID+
Sbjct: 73 DLPPVAILNALNALLDKDIRVVAANKVSDQFHARYQVLGKGYRY------------RIDT 120
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEG-- 127
GK ++N F + P ++++ + L+ L G
Sbjct: 121 -------------GK------------VLNPFKRFYTTHHPYSYSLTSIQKALEPLLGWH 155
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
S+ + D + R +Y A V + EG++++ + N FL
Sbjct: 156 DFTSFCSTKTDKEDKRRT-------LYKAE---------VREDNEGQELI-FDFYGNGFL 198
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
M+R++V T ++ D + +L+ R P APP+GL L+ V Y
Sbjct: 199 YNMIRIIVGTAMQIGDGLKDPSEMQRLLQVKDRNQAGPTAPPQGLYLMHVDY 250
>gi|255036264|ref|YP_003086885.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053]
gi|254949020|gb|ACT93720.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053]
Length = 248
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 111 RNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDH 170
RN + R+N LL++ F +K N+ C I +R E
Sbjct: 131 RNLDVPRMN----EAAALLLAHNDFESFSKIHTNVNN-FRCTITESRWVEV--------- 176
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
GE ++ + ANRFLR MVR LV T++ D +++ + R+ AP E
Sbjct: 177 GE---MLVFHVKANRFLRGMVRALVGTMLEVGRQKITVDDFEQIILSRNRKNAGAQAPAE 233
Query: 231 GLCLVDVGY 239
GL LV+VGY
Sbjct: 234 GLFLVEVGY 242
>gi|392939543|ref|ZP_10305187.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
gi|392291293|gb|EIV99736.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
Length = 244
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TLV ED + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLVYVGLGKIKEDEVYDILKSRDRTKAGVTAPPQGLYLIKIM 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
>gi|119511153|ref|ZP_01630270.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414]
gi|119464141|gb|EAW45061.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414]
Length = 296
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ AN FL MVR+LV L + +L R APP+GLCL+
Sbjct: 193 LHIEIQANGFLYGMVRLLVGMLAQVGTGKLTLAGFTELWQEERREEVKYAAPPQGLCLLR 252
Query: 237 VGYTNF 242
VGY +F
Sbjct: 253 VGYPDF 258
>gi|387133188|ref|YP_006299160.1| tRNA pseudouridine(38-40) synthase [Prevotella intermedia 17]
gi|386376036|gb|AFJ08801.1| tRNA pseudouridine(38-40) synthase [Prevotella intermedia 17]
Length = 257
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 131 SYKTFARDTKASRNIG---PPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
SY RD K G T C + AR ++D + C + ANRFL
Sbjct: 143 SYLVGERDFKCFCKAGGDNKTTICNLTEARWERCKTELSIHDDAAEAEEWCFVITANRFL 202
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
R MVR +V TL+ D K++D+ R P L L +V Y +F
Sbjct: 203 RNMVRAVVGTLIEVGRGRISLDEFRKIVDSGTRSDAGESMPGNALFLWNVEYPSF 257
>gi|386266081|ref|YP_005829573.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2846]
gi|309973317|gb|ADO96518.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2846]
Length = 269
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|417842135|ref|ZP_12488230.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19501]
gi|341947915|gb|EGT74556.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19501]
Length = 269
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIVVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|403743648|ref|ZP_10953200.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122678|gb|EJY56883.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
Length = 268
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ + FL+ MVR++V TLV+ + D + ++ A RR APP GLCL +
Sbjct: 191 LAIEVEGSGFLQYMVRIIVGTLVKVGQGREEADRIPAILAARDRRLAGETAPPHGLCLWN 250
Query: 237 VGY 239
V Y
Sbjct: 251 VEY 253
>gi|339442270|ref|YP_004708275.1| hypothetical protein CXIVA_12070 [Clostridium sp. SY8519]
gi|338901671|dbj|BAK47173.1| hypothetical protein CXIVA_12070 [Clostridium sp. SY8519]
Length = 256
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR+L TL+ A + +L+++ A R P AP GLCL++V Y
Sbjct: 202 FLQNMVRILTGTLLEVGAGRMQAEDMLRILAAGVRAQAGPTAPARGLCLLEVDY 255
>gi|222056725|ref|YP_002539087.1| tRNA pseudouridine synthase A [Geobacter daltonii FRC-32]
gi|254789637|sp|B9M6W5.1|TRUA_GEOSF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221566014|gb|ACM21986.1| tRNA pseudouridine synthase A [Geobacter daltonii FRC-32]
Length = 244
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 140 KASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLV 199
+AS + T ++H + ++ HG G FL+ MVRV+ TLV
Sbjct: 157 RASNCVAKTTIRRMFHVSVAKVGDSVIIDVHGSG------------FLKNMVRVIAGTLV 204
Query: 200 REAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D A+ L+ R A+ APP+GLCL++V Y
Sbjct: 205 AVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLMEVFY 244
>gi|422699954|ref|ZP_16757812.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422734009|ref|ZP_16790307.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
Length = 277
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + +GE ++ V N FL KMVR+LV TL+ E AG E A++ + A
Sbjct: 198 TTRTIEKITIERNGE---MLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFA 253
Query: 218 T-CRRATAPPAPPEGLCLVDVGY 239
T R AP +GL L +V Y
Sbjct: 254 TKVREGAGETAPAQGLFLDEVYY 276
>gi|381181392|ref|ZP_09890226.1| tRNA pseudouridine synthase A [Treponema saccharophilum DSM 2985]
gi|380766612|gb|EIC00617.1| tRNA pseudouridine synthase A [Treponema saccharophilum DSM 2985]
Length = 261
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 51/231 (22%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
+KP + A+N+ P +RV +V F+ FSA R Y Y L+ G + S
Sbjct: 77 MKPENYVPALNAFLPPDVRVNDAREVGAEFNARFSATSRTYRYF--LHCGASPLASETRY 134
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
V + H P I +N + L G++
Sbjct: 135 V--------------------------------WALHRMP---DIHVLNEMASHLRGEI- 158
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
TFA A+ + T FI +A P P N G +++ E+ AN FL KM
Sbjct: 159 DCATFA----AAGDQSLSTMRFIENA----VFYPDPAN----GERIV-FEIRANAFLWKM 205
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
VR + +LV AG D D +++++ R+ P AP GL L VG++
Sbjct: 206 VRSVTGSLVAFERAGRDGDYFREVLESRDRKRAGPTAPATGLFLWSVGFSG 256
>gi|254430842|ref|ZP_05044545.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001]
gi|197625295|gb|EDY37854.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001]
Length = 306
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 87/223 (39%), Gaps = 57/223 (25%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY-IFPLNDGENREQSIDSEVEVENFH 77
A+N P IRV++ SQV +H +SA +RRY Y IF
Sbjct: 93 ALNGRLPPTIRVMAASQVPPDWHACYSATYRRYRYTIF---------------------- 130
Query: 78 TSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFAR 137
NG NL + + H R N ++Q L+G L + A
Sbjct: 131 ---------NG---RAPNLFLAP---WSWH---RYQYRLDENAMVQALQGMLGEHDFSAF 172
Query: 138 DTKASRNIGPPTECFIYHARAT-EAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVA 196
SR HAR T + +L + G+ ++ VEL A+ FL MVR+++
Sbjct: 173 QRTGSRR---------RHARTTLQDVL---LEREGD---LLRVELQASGFLYGMVRLVLG 217
Query: 197 TLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
LV +A + R A APP GLCL+ VGY
Sbjct: 218 QLVAVGEGRLSPEAFARRWRHRDRGAVKEAAPPHGLCLLRVGY 260
>gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus
Kuenenia stuttgartiensis]
Length = 244
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG+ + V + AN FL KMVR +V TL+ D + KL++ R P AP +G
Sbjct: 178 EGKYIYFV-VEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKG 236
Query: 232 LCLVDVGY 239
LC+ +V Y
Sbjct: 237 LCMKEVKY 244
>gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149]
gi|336431647|ref|ZP_08611492.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794170|gb|EDN76590.1| tRNA pseudouridine synthase A [Ruminococcus gnavus ATCC 29149]
gi|336019920|gb|EGN49638.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 246
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 166 PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
PV D + + + N FL MVR++V TLVR + + ++++A R+A
Sbjct: 177 PVGDE------ITIRIQGNGFLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRKAAGV 230
Query: 226 PAPPEGLCLVDVGY 239
APP+GL LV + Y
Sbjct: 231 TAPPQGLFLVGIEY 244
>gi|411119491|ref|ZP_11391871.1| pseudouridylate synthase I [Oscillatoriales cyanobacterium JSC-12]
gi|410711354|gb|EKQ68861.1| pseudouridylate synthase I [Oscillatoriales cyanobacterium JSC-12]
Length = 283
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL M+R+LV LV+ + +L A R APP GLCL+
Sbjct: 191 ISIEVQASGFLYGMMRLLVGLLVQVGRGDRSPSSFTELWLAQRRSEVKYAAPPHGLCLLR 250
Query: 237 VGYTNF 242
VGY +F
Sbjct: 251 VGYADF 256
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 18 DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF 55
D +NS PG I + + + VS +H FSA WRRY Y+
Sbjct: 85 DILNSRLPGDILIRASASVSSAWHARFSAIWRRYRYLL 122
>gi|298491424|ref|YP_003721601.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708]
gi|298233342|gb|ADI64478.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708]
Length = 275
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV+ + D ++ R APP+GLCL+ V
Sbjct: 194 IEIQANGFLYGMVRLLVGMLVQLGSGQVTLDNFTEIWKEERREKVKYAAPPQGLCLLRVE 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|338706779|ref|YP_004673547.1| tRNA-pseudouridine synthase I [Treponema paraluiscuniculi Cuniculi
A]
gi|378975469|ref|YP_005224079.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pallidum
DAL-1]
gi|408502682|ref|YP_006870126.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|335344840|gb|AEH40756.1| tRNA-pseudouridine synthase I [Treponema paraluiscuniculi Cuniculi
A]
gi|374680869|gb|AEZ61159.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pallidum
DAL-1]
gi|408476045|gb|AFU66810.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 261
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+V+ E+ AN FL KMVR L TL+ ++++ A RR P APP GL L
Sbjct: 189 RVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRLAGPTAPPHGLFL 248
Query: 235 VDVGY 239
++ Y
Sbjct: 249 WNIRY 253
>gi|337288276|ref|YP_004627748.1| tRNA pseudouridine synthase A [Thermodesulfobacterium sp. OPB45]
gi|334902014|gb|AEH22820.1| tRNA pseudouridine synthase A [Thermodesulfobacterium geofontis
OPF15]
Length = 268
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 173 GRKVM-CVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
G+K M E++ F+R MVR LV LV + K+++A R PPAPP+G
Sbjct: 185 GKKHMIAFEIIGRGFMRYMVRNLVGALVEVGKGNLTIEDFQKILEAKDRSLAPPPAPPQG 244
Query: 232 LCLVDVGY 239
L L + Y
Sbjct: 245 LILKKIEY 252
>gi|378973344|ref|YP_005221950.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378974411|ref|YP_005223019.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378982320|ref|YP_005230627.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374677669|gb|AEZ57962.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678739|gb|AEZ59031.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679808|gb|AEZ60099.1| tRNA-pseudouridine synthase I [Treponema pallidum subsp. pertenue
str. Gauthier]
Length = 261
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+V+ E+ AN FL KMVR L TL+ ++++ A RR P APP GL L
Sbjct: 189 RVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRLAGPTAPPHGLFL 248
Query: 235 VDVGY 239
++ Y
Sbjct: 249 WNIRY 253
>gi|443321114|ref|ZP_21050178.1| pseudouridylate synthase I [Gloeocapsa sp. PCC 73106]
gi|442789142|gb|ELR98811.1| pseudouridylate synthase I [Gloeocapsa sp. PCC 73106]
Length = 276
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A FL MVR+LV LV ++ + R A APP+GLCL+
Sbjct: 187 LVSLEIQAQGFLYGMVRLLVGMLVEVGTGQRSLTNFREIWEEQQREAVKYAAPPQGLCLL 246
Query: 236 DVGYTNF 242
VGY F
Sbjct: 247 RVGYREF 253
>gi|434391752|ref|YP_007126699.1| tRNA pseudouridine synthase A [Gloeocapsa sp. PCC 7428]
gi|428263593|gb|AFZ29539.1| tRNA pseudouridine synthase A [Gloeocapsa sp. PCC 7428]
Length = 297
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR++V LV + +L R APP+GLCL+ VG
Sbjct: 192 IEIQADGFLYGMVRLIVGLLVDVGKGSLSLEKFTELWQQQRRENVKYAAPPQGLCLLRVG 251
Query: 239 YTNF 242
Y++F
Sbjct: 252 YSDF 255
>gi|329121886|ref|ZP_08250501.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
gi|327467824|gb|EGF13316.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
Length = 244
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL+ M+R++V TLV D D+L ++ + R APP+GL L+
Sbjct: 181 ILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLTLI 240
Query: 236 DVGY 239
V Y
Sbjct: 241 SVQY 244
>gi|402570866|ref|YP_006620209.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
gi|402252063|gb|AFQ42338.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
Length = 260
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 82/234 (35%), Gaps = 59/234 (25%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSEVE 72
I A NS P IRV+ V+ F+ +SA+W+RY Y+ P+ D R + +
Sbjct: 77 IPKAFNSLLPKDIRVLEAECVADDFNSRWSARWKRYDYLIDNKPIPDTFQRLYAYHVPLP 136
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
+ H GC+ ++
Sbjct: 137 LNTDHM-QQAAIYLEGCH----------------------------------------NF 155
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
KTFA S+ R I C V+ +G ++ V + + FL MVR
Sbjct: 156 KTFAAAGGDSK-------------RFERTIYRCKVSREDKG--MIRVTCIGDGFLYHMVR 200
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
++V TLV + ++ + RR AP GL LV V YTN P
Sbjct: 201 IIVGTLVDVGRGRILPGEIPDIIASQERRRARMVAPAHGLTLVHVNYTNESPST 254
>gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
gi|238688683|sp|B1KKN8.1|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
Length = 261
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ + + +L+ R AP A P GL +VD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDRSKAAPTAKPNGLYMVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PEHFQLP 250
>gi|16273533|ref|NP_439786.1| tRNA pseudouridine synthase A [Haemophilus influenzae Rd KW20]
gi|260580419|ref|ZP_05848248.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW]
gi|1174804|sp|P45291.1|TRUA_HAEIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|1574492|gb|AAC23291.1| pseudouridylate synthase I (truA) [Haemophilus influenzae Rd KW20]
gi|260093096|gb|EEW77030.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW]
Length = 269
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|313891575|ref|ZP_07825185.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
gi|313120034|gb|EFR43216.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
Length = 244
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL+ M+R++V TLV D D+L ++ + R APP+GL L+
Sbjct: 181 ILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLTLI 240
Query: 236 DVGY 239
V Y
Sbjct: 241 SVQY 244
>gi|429762013|ref|ZP_19294420.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
gi|429182559|gb|EKY23657.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
Length = 248
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+K + + N FL MVR+L TLV + + K +++T R APP+GL
Sbjct: 183 KKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDAGITAPPQGLF 242
Query: 234 LVDVGY 239
LV V Y
Sbjct: 243 LVSVEY 248
>gi|378823182|ref|ZP_09845861.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
gi|378597991|gb|EHY31200.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
Length = 266
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLC 233
+++ V + AN FL+ MVR +V TL+ +G +E +K ++DA R AP P GL
Sbjct: 184 RLVGVRIRANAFLQHMVRNIVGTLIY-VGSGREEPGWVKEVLDAKSRAVAAPTFSPSGLY 242
Query: 234 LVDVGYTNFD 243
L VGY D
Sbjct: 243 LTGVGYPGID 252
>gi|189461835|ref|ZP_03010620.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136]
gi|189431429|gb|EDV00414.1| tRNA pseudouridine synthase A [Bacteroides coprocola DSM 17136]
Length = 252
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HAR + GE V ++ A+RFLR
Sbjct: 146 LFEYTDFTSFSKLHTDV-KTNNCRIMHARWEQI---------GEDEWVFTIQ--ADRFLR 193
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TLV + K+++ R + P L LVD+GY
Sbjct: 194 NMVRAVVGTLVEVGRGKLTVEGFRKVIEEKNRCSAGTSVPGHALFLVDIGY 244
>gi|440683432|ref|YP_007158227.1| tRNA pseudouridine synthase A [Anabaena cylindrica PCC 7122]
gi|428680551|gb|AFZ59317.1| tRNA pseudouridine synthase A [Anabaena cylindrica PCC 7122]
Length = 275
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + ++ R APP+GLCL+ VG
Sbjct: 194 IEIQANGFLYGMVRLLVGMLVEVGSGQRTLNNFTEIWQEQRRDEVKYAAPPQGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759]
gi|158448534|gb|EDP25529.1| tRNA pseudouridine synthase A [Coprococcus eutactus ATCC 27759]
Length = 271
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL+ MVR+L TLV D + + +++ R+ P APP GLCL+ V Y
Sbjct: 214 GNGFLQNMVRILTGTLVEIGYGHMDAEHMPEIIVGMDRQLAGPTAPPHGLCLLKVEY 270
>gi|229846251|ref|ZP_04466363.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1]
gi|229811255|gb|EEP46972.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1]
Length = 269
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|167767146|ref|ZP_02439199.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1]
gi|167711121|gb|EDS21700.1| tRNA pseudouridine synthase A [Clostridium sp. SS2/1]
gi|291559527|emb|CBL38327.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2]
Length = 248
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+K + + N FL MVR+L TLV + + K +++T R APP+GL
Sbjct: 183 KKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDAGITAPPQGLF 242
Query: 234 LVDVGY 239
LV V Y
Sbjct: 243 LVSVEY 248
>gi|219849858|ref|YP_002464291.1| tRNA pseudouridine synthase ACD [Chloroflexus aggregans DSM 9485]
gi|254789611|sp|B8G6P6.1|TRUA_CHLAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219544117|gb|ACL25855.1| tRNA pseudouridine synthase A [Chloroflexus aggregans DSM 9485]
Length = 278
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +EL AN FL+ MVR++V TL+ D +++ RR P AP GL
Sbjct: 183 RRLLAIELAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPAHGLT 242
Query: 234 LVDVGY 239
L V Y
Sbjct: 243 LTAVRY 248
>gi|374298040|ref|YP_005048231.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
gi|359827534|gb|AEV70307.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
Length = 244
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++C E+ + FL MVR++V T+V + + + ++++ RR APP+GL LV
Sbjct: 181 LICFEVSGDGFLYNMVRIMVGTIVDVGMGRIEAEDIPDIIESLDRRRAGRTAPPQGLYLV 240
Query: 236 DVGY 239
+V Y
Sbjct: 241 EVYY 244
>gi|434404990|ref|YP_007147875.1| pseudouridylate synthase I [Cylindrospermum stagnale PCC 7417]
gi|428259245|gb|AFZ25195.1| pseudouridylate synthase I [Cylindrospermum stagnale PCC 7417]
Length = 285
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL MVR+LV LV+ + + ++ R APP+GLCL+
Sbjct: 192 LHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLASFTEIWKEQRREEVKYAAPPQGLCLLR 251
Query: 237 VGYTNF 242
VGY +F
Sbjct: 252 VGYPDF 257
>gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
Length = 246
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R + AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGASETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|255284006|ref|ZP_05348561.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469]
gi|255265459|gb|EET58664.1| tRNA pseudouridine synthase A [Marvinbryantia formatexigens DSM
14469]
Length = 245
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + N FL MVR++V TL+R + + + +L+ A R+A APP+GL L+
Sbjct: 181 MISIRISGNGFLYNMVRIIVGTLLRVGSGYYPPEYMQELLAAKNRQAAGETAPPQGLTLL 240
Query: 236 DVGY 239
++ Y
Sbjct: 241 EIRY 244
>gi|392988146|ref|YP_006486739.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
gi|392335566|gb|AFM69848.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
Length = 248
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL KM+R+LV TL++ ED++ +++ R A P A PEGL L +V Y
Sbjct: 191 GNGFLYKMIRILVGTLLKIGNGRLSEDSIPEIIAKKDRNAAGPTAHPEGLYLYEVVY 247
>gi|431545045|ref|ZP_19518686.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
gi|430592093|gb|ELB30115.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
Length = 248
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|375253838|ref|YP_005013005.1| tRNA pseudouridine synthase A [Tannerella forsythia ATCC 43037]
gi|363407614|gb|AEW21300.1| tRNA pseudouridine synthase A [Tannerella forsythia ATCC 43037]
Length = 252
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+RFLR MVR +V T+ D +L++A R APPEGL L+D+ Y
Sbjct: 188 ADRFLRNMVRAMVGTMFEVGRGKRSVDDFRRLIEAKDRCRAGTSAPPEGLTLIDIDY 244
>gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
Length = 246
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|424763809|ref|ZP_18191274.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
gi|402421985|gb|EJV54228.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
Length = 248
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKNELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|430836397|ref|ZP_19454378.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506867|ref|ZP_19515693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430488524|gb|ELA65195.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587254|gb|ELB25487.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 248
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|404493538|ref|YP_006717644.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380]
gi|123756611|sp|Q3A3B5.1|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|77545580|gb|ABA89142.1| tRNA pseudouridines 38,39,40 synthase [Pelobacter carbinolicus DSM
2380]
Length = 252
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V++ + FLR MVR++V TLV + + ++ CR+ + AP +GLCL++V
Sbjct: 184 VDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVA 243
Query: 239 YTNFD 243
Y D
Sbjct: 244 YAPQD 248
>gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|397701171|ref|YP_006538959.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
gi|422708872|ref|ZP_16766392.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|422868413|ref|ZP_16914955.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|397337810|gb|AFO45482.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
Length = 246
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|431210693|ref|ZP_19500979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|431764935|ref|ZP_19553461.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
gi|430570552|gb|ELB09501.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|430629706|gb|ELB66095.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
Length = 248
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|383327446|ref|YP_005353330.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|389867271|ref|YP_006374694.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|415896805|ref|ZP_11550910.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|416132123|ref|ZP_11597813.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|424797462|ref|ZP_18223046.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|424828252|ref|ZP_18252988.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|424854855|ref|ZP_18279198.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|424869431|ref|ZP_18293135.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|424950219|ref|ZP_18365390.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|424954358|ref|ZP_18369260.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|424958446|ref|ZP_18373092.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|424959879|ref|ZP_18374436.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|424969500|ref|ZP_18383070.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|424974094|ref|ZP_18387346.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|424981065|ref|ZP_18393818.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|424984579|ref|ZP_18397107.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|424987439|ref|ZP_18399814.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|424990891|ref|ZP_18403081.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|424994548|ref|ZP_18406483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|424997377|ref|ZP_18409140.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|425001396|ref|ZP_18412915.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|425004004|ref|ZP_18415334.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|425006893|ref|ZP_18418048.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|425011040|ref|ZP_18421964.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|425014143|ref|ZP_18424838.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|425017881|ref|ZP_18428362.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|425020890|ref|ZP_18431177.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|425030507|ref|ZP_18435680.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|425035568|ref|ZP_18440403.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|425041744|ref|ZP_18446127.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|425045393|ref|ZP_18449499.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|425048537|ref|ZP_18452437.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|425051628|ref|ZP_18455285.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430831851|ref|ZP_19449899.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430848250|ref|ZP_19466076.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430855719|ref|ZP_19473425.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|431749395|ref|ZP_19538136.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|431755908|ref|ZP_19544550.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|431768043|ref|ZP_19556484.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|431769452|ref|ZP_19557862.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|431773311|ref|ZP_19561637.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|431779671|ref|ZP_19567863.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|431782526|ref|ZP_19570659.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|431784347|ref|ZP_19572389.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|364090913|gb|EHM33441.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|364093389|gb|EHM35663.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|378937140|gb|AFC62212.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|388532520|gb|AFK57712.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|402921018|gb|EJX41488.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|402922786|gb|EJX43133.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|402932184|gb|EJX51716.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|402933508|gb|EJX52934.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|402935534|gb|EJX54777.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|402936992|gb|EJX56136.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|402940072|gb|EJX58929.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|402948470|gb|EJX66607.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|402949363|gb|EJX67429.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|402957441|gb|EJX74832.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|402964679|gb|EJX81447.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|402968526|gb|EJX85005.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|402974431|gb|EJX90483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|402978473|gb|EJX94212.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|402979975|gb|EJX95614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|402986491|gb|EJY01614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|402986953|gb|EJY02052.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|402990657|gb|EJY05522.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|402996225|gb|EJY10625.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|402998247|gb|EJY12512.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|402999493|gb|EJY13680.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|403002740|gb|EJY16686.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|403003399|gb|EJY17299.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|403008068|gb|EJY21597.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|403017822|gb|EJY30546.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|403025525|gb|EJY37603.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|403027086|gb|EJY38998.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|403030468|gb|EJY42151.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|403037248|gb|EJY48548.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430480492|gb|ELA57666.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430535593|gb|ELA75993.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430546261|gb|ELA86223.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|430611524|gb|ELB48605.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|430616023|gb|ELB52948.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|430629772|gb|ELB66160.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|430636734|gb|ELB72794.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|430637027|gb|ELB73071.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|430641433|gb|ELB77235.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|430647163|gb|ELB82611.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|430649921|gb|ELB85288.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
Length = 248
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|422730419|ref|ZP_16786811.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
Length = 246
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|384516827|ref|YP_005704132.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|421514336|ref|ZP_15961026.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
gi|422684612|ref|ZP_16742845.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|422691913|ref|ZP_16749941.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|422693620|ref|ZP_16751630.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|422702460|ref|ZP_16760295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|422713974|ref|ZP_16770722.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|422716729|ref|ZP_16773431.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|422724999|ref|ZP_16781469.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|401672554|gb|EJS79022.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
Length = 246
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|307128564|ref|YP_003880594.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI]
gi|306483026|gb|ADM89896.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI]
Length = 252
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+K + + ANRFLR MVR +V TL+ +++++A R AP +GL
Sbjct: 180 KKKLFFYIEANRFLRNMVRSIVGTLIELGIKKITLKDFIQIIEAKNRHLAGISAPAKGLF 239
Query: 234 LVDVGY 239
L+ + Y
Sbjct: 240 LIKINY 245
>gi|392374405|ref|YP_003206238.1| tRNA pseudouridine synthase A [Candidatus Methylomirabilis oxyfera]
gi|258592098|emb|CBE68403.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Candidatus Methylomirabilis
oxyfera]
Length = 263
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
+L HG+ + E+VA+ FLR M+R+++ TL+ +AL + + R
Sbjct: 170 VLVAEFRQHGDH---LLFEIVADGFLRHMIRIIMGTLLDIGRGRLQVEALHIIREGRDRN 226
Query: 222 ATAPPAPPEGLCLVDVGYTNF 242
+ P GLCL++VGY F
Sbjct: 227 QASKTISPHGLCLLEVGYHPF 247
>gi|430853259|ref|ZP_19470989.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
gi|430541081|gb|ELA81258.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
Length = 248
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|406982136|gb|EKE03496.1| hypothetical protein ACD_20C00197G0011 [uncultured bacterium]
Length = 287
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 55/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
++N+ P I V S+ +V FH SAK R Y Y NR Q + E N
Sbjct: 97 SLNAILPSDISVNSIVEVDCNFHSQKSAKARWYRYTI-----NNRPQRSVWQKEALNIQQ 151
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
NV + + + LI GSH+ + +F
Sbjct: 152 KLNVDEMNKAL-----SFLI------GSHD-----------------------FSSF--- 174
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
K++ + TEC + + + ++ ++++ANRFL MVR+++ TL
Sbjct: 175 -KSANSTNSATECTVIYTQCKSE------------ADIIHIDIIANRFLYNMVRIVIGTL 221
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + +L++++A R P A PEGL L+ V Y
Sbjct: 222 ISIGKGTFPAEYMLEVLNAKDRTKAGPTARPEGLTLMSVYY 262
>gi|417844832|ref|ZP_12490871.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21639]
gi|341956312|gb|EGT82742.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21639]
Length = 269
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGVGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>gi|384514261|ref|YP_005709354.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|430360085|ref|ZP_19426062.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|430366115|ref|ZP_19427296.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|429512997|gb|ELA02590.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|429517129|gb|ELA06596.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
Length = 246
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|431036445|ref|ZP_19492215.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|431739039|ref|ZP_19527979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|431740680|ref|ZP_19529591.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|431753086|ref|ZP_19541763.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|431757912|ref|ZP_19546541.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|431763178|ref|ZP_19551731.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|430562985|gb|ELB02216.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|430596582|gb|ELB34406.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|430602763|gb|ELB40313.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|430612591|gb|ELB49626.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|430618417|gb|ELB55264.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|430622872|gb|ELB59582.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
Length = 248
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|328951883|ref|YP_004369217.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109]
gi|328452207|gb|AEB08036.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109]
Length = 267
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
++ AN FLR MVR LV T+V L +L+ A RR P AP GL LV+V Y
Sbjct: 207 QITANGFLRGMVRALVGTMVEVGWGKRSPGDLKRLLAARDRRQAGPTAPAAGLYLVEVRY 266
>gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|424791183|ref|ZP_18217664.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|424965709|ref|ZP_18379626.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|424970217|ref|ZP_18383746.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|424976158|ref|ZP_18389264.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|425038374|ref|ZP_18442993.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|425060468|ref|ZP_18463762.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430820873|ref|ZP_19439494.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430823302|ref|ZP_19441874.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430826412|ref|ZP_19444595.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430828802|ref|ZP_19446917.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430850728|ref|ZP_19468485.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430866335|ref|ZP_19481612.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430890779|ref|ZP_19484469.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|431380484|ref|ZP_19510865.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|431695892|ref|ZP_19524786.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|431743996|ref|ZP_19532869.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|431747207|ref|ZP_19536006.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|402919941|gb|EJX40500.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|402942930|gb|EJX61471.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|402962420|gb|EJX79362.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|402970284|gb|EJX86639.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|403019740|gb|EJY32323.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|403042512|gb|EJY53459.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430439133|gb|ELA49511.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430442400|gb|ELA52445.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430445039|gb|ELA54826.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430482786|gb|ELA59887.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430535087|gb|ELA75510.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430551563|gb|ELA91314.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430555827|gb|ELA95356.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|430582352|gb|ELB20779.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|430597845|gb|ELB35627.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|430606059|gb|ELB43431.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|430606736|gb|ELB44074.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
Length = 248
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|21673806|ref|NP_661871.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS]
gi|42559829|sp|Q8KDR7.1|TRUA_CHLTE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21646936|gb|AAM72213.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS]
Length = 247
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 78/219 (35%), Gaps = 56/219 (25%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSN 80
NS P IR+ ++ Q FH FSA R Y Y +IDS
Sbjct: 85 NSLLPSTIRINAMRQAPESFHARFSATSREYRYFL-----LEHPSAIDSRFA-------- 131
Query: 81 NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTK 140
GC SH KP + R+ L+L + F+++T
Sbjct: 132 -------GC----------------SHGKPDVGAMNRLALMLIGTH----DFAAFSKETP 164
Query: 141 ASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVR 200
T C + AR + GR + ANRFLR MVR LVA ++
Sbjct: 165 DQYG----TLCTVTAARWYRS-----------GR-FHVFRIEANRFLRSMVRFLVAGMIE 208
Query: 201 EAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+E A +++++ R PA GL L V Y
Sbjct: 209 VGMGRLEEGAFARMLESGHRPPKLKPADAAGLFLWKVRY 247
>gi|229548121|ref|ZP_04436846.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|257091270|ref|ZP_05585631.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|257417169|ref|ZP_05594163.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|300861430|ref|ZP_07107514.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|312905329|ref|ZP_07764444.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
gi|422688399|ref|ZP_16746554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|422731451|ref|ZP_16787818.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|422738250|ref|ZP_16793451.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|428768142|ref|YP_007154253.1| tRNA pseudouridine synthase [Enterococcus faecalis str. Symbioflor
1]
gi|229306807|gb|EEN72803.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|257000082|gb|EEU86602.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|257158997|gb|EEU88957.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|295114364|emb|CBL33001.1| pseudouridylate synthase I [Enterococcus sp. 7L76]
gi|300848891|gb|EFK76644.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|310631353|gb|EFQ14636.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
gi|315145838|gb|EFT89854.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|315162508|gb|EFU06525.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|315578608|gb|EFU90799.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|427186315|emb|CCO73539.1| tRNA pseudouridine synthase [Enterococcus faecalis str. Symbioflor
1]
Length = 246
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|422707940|ref|ZP_16765474.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
Length = 277
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 212 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270
Query: 234 LVDVGY 239
L +V Y
Sbjct: 271 LDEVYY 276
>gi|443313543|ref|ZP_21043154.1| pseudouridylate synthase I [Synechocystis sp. PCC 7509]
gi|442776486|gb|ELR86768.1| pseudouridylate synthase I [Synechocystis sp. PCC 7509]
Length = 276
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV+ + +L R APP GLCL+ VG
Sbjct: 194 IEIQANGFLYGMVRLLVGLLVQVGTGKRSLEEFTELWQQERREEVKHAAPPWGLCLLRVG 253
Query: 239 YTN--FDPQ 245
Y + F P+
Sbjct: 254 YEDSPFPPE 262
>gi|430834845|ref|ZP_19452847.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
gi|430484914|gb|ELA61861.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|430842461|ref|ZP_19460376.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|431081677|ref|ZP_19495767.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|431118130|ref|ZP_19498084.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|431592305|ref|ZP_19521541.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
gi|430493542|gb|ELA69845.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|430565609|gb|ELB04755.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|430568087|gb|ELB07144.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|430591930|gb|ELB29957.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|425054937|ref|ZP_18458438.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
gi|403035071|gb|EJY46479.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
Length = 246
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 181 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 239
Query: 234 LVDVGY 239
L +V Y
Sbjct: 240 LDEVYY 245
>gi|406580853|ref|ZP_11056041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|406582789|ref|ZP_11057886.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|406585103|ref|ZP_11060098.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|406590682|ref|ZP_11065041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410936048|ref|ZP_11367920.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
gi|404453484|gb|EKA00540.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|404457526|gb|EKA04063.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|404463085|gb|EKA08783.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|404469056|gb|EKA13895.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410735639|gb|EKQ77548.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|425058236|ref|ZP_18461622.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430839325|ref|ZP_19457266.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430858980|ref|ZP_19476598.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|403038766|gb|EJY49963.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430490783|gb|ELA67279.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430544499|gb|ELA84528.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|431438075|ref|ZP_19513238.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|431760104|ref|ZP_19548708.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
gi|430586910|gb|ELB25152.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|430625373|gb|ELB62013.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|404495464|ref|YP_006719570.1| tRNA pseudouridine synthase A [Geobacter metallireducens GS-15]
gi|418068143|ref|ZP_12705458.1| tRNA pseudouridine synthase A [Geobacter metallireducens RCH3]
gi|373557514|gb|EHP83923.1| tRNA pseudouridine synthase A [Geobacter metallireducens RCH3]
gi|403377973|gb|ABB30848.2| tRNA pseudouridines 38,39,40 synthase [Geobacter metallireducens
GS-15]
Length = 244
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +++ + FLR MVR++V TLV D + L R P APP+GLCL+
Sbjct: 181 LLHIDVKGSGFLRNMVRIMVGTLVEVGRGRRSADDVALLFRYPGERFAGPTAPPQGLCLM 240
Query: 236 DVGY 239
+V Y
Sbjct: 241 EVYY 244
>gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|427396968|ref|ZP_18889594.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430843084|ref|ZP_19460986.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430861262|ref|ZP_19478851.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430952305|ref|ZP_19486348.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430999188|ref|ZP_19488156.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|431234974|ref|ZP_19502997.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|431255642|ref|ZP_19504765.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|431303512|ref|ZP_19508359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|447911605|ref|YP_007393017.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|425722715|gb|EKU85609.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430498138|gb|ELA74146.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430550295|gb|ELA90092.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430557440|gb|ELA96899.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430563295|gb|ELB02524.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|430572834|gb|ELB11670.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|430577840|gb|ELB16420.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|430580153|gb|ELB18633.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|445187314|gb|AGE28956.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
Length = 248
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|293388406|ref|ZP_06632914.1| tRNA pseudouridine synthase A, partial [Enterococcus faecalis S613]
gi|291082181|gb|EFE19144.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613]
Length = 280
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 215 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 273
Query: 234 LVDVGY 239
L +V Y
Sbjct: 274 LDEVYY 279
>gi|260438183|ref|ZP_05791999.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
gi|292809373|gb|EFF68578.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
Length = 250
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ + + N FL MVR++ TL++ + + K++D R P AP GL L
Sbjct: 179 RLITIRVTGNGFLYNMVRIIAGTLIKVGQGQLEPAEIPKIIDGKNRELAGPTAPARGLAL 238
Query: 235 VDVGY 239
V++ Y
Sbjct: 239 VEINY 243
>gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
Length = 248
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + + N FL KM+R+LV TL++ ED++ ++ R A P A PEG
Sbjct: 180 ETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEG 239
Query: 232 LCLVDVGY 239
L L +V Y
Sbjct: 240 LYLYEVKY 247
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL KMVR++V +LV E+AL +++ RR AP +GL L
Sbjct: 182 IWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLYLQK 241
Query: 237 VGY 239
V Y
Sbjct: 242 VFY 244
>gi|427714132|ref|YP_007062756.1| pseudouridylate synthase I [Synechococcus sp. PCC 6312]
gi|427378261|gb|AFY62213.1| pseudouridylate synthase I [Synechococcus sp. PCC 6312]
Length = 282
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ +E+ A+ FL M+R+LV LV+ + ++ CR AP +GLCL+
Sbjct: 190 VVEIEVQASGFLYGMMRLLVGLLVQVGSGQCSSLDFTRIWQQNCRNEVKYSAPAKGLCLL 249
Query: 236 DVGYTNF 242
VGY +F
Sbjct: 250 RVGYPDF 256
>gi|424758982|ref|ZP_18186655.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
gi|402405403|gb|EJV37995.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
Length = 277
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 212 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270
Query: 234 LVDVGY 239
L +V Y
Sbjct: 271 LDEVYY 276
>gi|389576563|ref|ZP_10166591.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
gi|389312048|gb|EIM56981.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
Length = 252
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 87/238 (36%), Gaps = 55/238 (23%)
Query: 2 IILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGE 61
++LDT + +I+ +N P I V + + FH F AK + Y Y F DG
Sbjct: 70 VLLDT---RMSEEEIQTYMNRYLPEDISVNELKVCADRFHSRFKAKGKTYCYSFWYADGG 126
Query: 62 NREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLL 121
R V V NV + E + + D F + + T+ L
Sbjct: 127 VRPTFDRKYVTV--LDKRPNVDRMRKAAEEIVG---MRDFKSFCGNSHMKKSTV----RL 177
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVEL 181
+ +E K+ GP +I HG G
Sbjct: 178 VDSIEFKIR---------------GPYIRIYI----------------HGSG-------- 198
Query: 182 VANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR++ TL+ +++ +L++A R+ P AP +GLCL+ V Y
Sbjct: 199 ----FLQNMVRIIAGTLLEVGYGKRTPESIAELIEARDRKLAGPTAPAQGLCLIKVDY 252
>gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
Length = 280
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +M +++V N FL MVR +V TLV D D + ++++A RR AP +GL
Sbjct: 214 GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENAPAQGL 273
Query: 233 CLVDVGY 239
V Y
Sbjct: 274 VFWRVIY 280
>gi|345430419|ref|YP_004823540.1| pseudouridylate synthase [Haemophilus parainfluenzae T3T1]
gi|301156483|emb|CBW15954.1| pseudouridylate synthase I [Haemophilus parainfluenzae T3T1]
Length = 264
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A PEGL L
Sbjct: 179 QFVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
V+V Y P+ IP
Sbjct: 239 VNVIY----PEKFAIP 250
>gi|227517362|ref|ZP_03947411.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|424677833|ref|ZP_18114683.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|424679416|ref|ZP_18116239.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|424684645|ref|ZP_18121355.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|424688492|ref|ZP_18125097.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|424691247|ref|ZP_18127771.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|424694286|ref|ZP_18130690.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|424696354|ref|ZP_18132707.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|424701590|ref|ZP_18137762.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|424704459|ref|ZP_18140554.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|424711587|ref|ZP_18143799.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|424716367|ref|ZP_18145678.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|424722136|ref|ZP_18151202.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|424724801|ref|ZP_18153739.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|424727495|ref|ZP_18156124.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|424743372|ref|ZP_18171684.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|424755023|ref|ZP_18182912.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|227075232|gb|EEI13195.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|402353643|gb|EJU88469.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|402356873|gb|EJU91593.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|402360368|gb|EJU94969.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|402360740|gb|EJU95335.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|402362446|gb|EJU96977.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|402371071|gb|EJV05248.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|402371335|gb|EJV05500.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|402378093|gb|EJV11973.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|402381700|gb|EJV15399.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|402383390|gb|EJV16997.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|402388224|gb|EJV21672.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|402389705|gb|EJV23093.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|402393869|gb|EJV27076.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|402396575|gb|EJV29630.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|402400199|gb|EJV33039.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|402401505|gb|EJV34275.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
Length = 277
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT-CRRATAPPAPPEGLC 233
+++ V N FL KMVR+LV TL+ E AG E A++ + AT R AP +GL
Sbjct: 212 EMLQFTFVGNGFLHKMVRILVGTLL-EIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270
Query: 234 LVDVGY 239
L +V Y
Sbjct: 271 LDEVYY 276
>gi|410943113|ref|ZP_11374854.1| tRNA pseudouridine synthase A [Gluconobacter frateurii NBRC 101659]
Length = 259
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H EG V+ V+ A FL VR +V +LV + + + +++A R A P +PP
Sbjct: 185 HREGDLVL-VDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEAKNRCAAGPTSPP 243
Query: 230 EGLCLVDVGY 239
+GLCL VGY
Sbjct: 244 DGLCLTGVGY 253
>gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
Length = 255
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +M +++V N FL MVR +V TLV D D + ++++A RR AP +GL
Sbjct: 189 GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENAPAQGL 248
Query: 233 CLVDVGY 239
V Y
Sbjct: 249 VFWRVIY 255
>gi|325578129|ref|ZP_08148264.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
gi|325159865|gb|EGC71994.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
Length = 264
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A PEGL L
Sbjct: 179 QYVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
V+V Y P+ IP
Sbjct: 239 VNVIY----PEKFAIP 250
>gi|330993399|ref|ZP_08317334.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1]
gi|329759429|gb|EGG75938.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1]
Length = 275
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC-RRATAPPAPPE 230
EG V+ +E A FL VR + TL + G E A + A C RRA P APPE
Sbjct: 202 EGEYVV-IEAAARSFLHHQVRNMAGTL-KLVGEGRWEPAQVAHALAACDRRAAGPTAPPE 259
Query: 231 GLCLVDVGY 239
GLCL VGY
Sbjct: 260 GLCLTGVGY 268
>gi|163847952|ref|YP_001635996.1| tRNA pseudouridine synthase ACD [Chloroflexus aurantiacus J-10-fl]
gi|222525832|ref|YP_002570303.1| tRNA pseudouridine synthase ACD [Chloroflexus sp. Y-400-fl]
gi|189030130|sp|A9WH95.1|TRUA_CHLAA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789612|sp|B9LJG1.1|TRUA_CHLSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163669241|gb|ABY35607.1| tRNA pseudouridine synthase A [Chloroflexus aurantiacus J-10-fl]
gi|222449711|gb|ACM53977.1| tRNA pseudouridine synthase A [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +E+ AN FL+ MVR++V TL+ D +++ + RR P AP GL
Sbjct: 183 RRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLT 242
Query: 234 LVDVGY 239
L V Y
Sbjct: 243 LTAVRY 248
>gi|442743050|ref|YP_007374354.1| putative tRNA pseudouridine synthase A [Candidatus Uzinura
diaspidicola str. ASNER]
gi|442739118|gb|AGC66814.1| putative tRNA pseudouridine synthase A [Candidatus Uzinura
diaspidicola str. ASNER]
Length = 245
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ ANRFLR MVR L+ TL+ + + +++DA R+ + P P GL L
Sbjct: 177 LLFEIKANRFLRNMVRSLIGTLLNIGKEKININQFCEIVDAKDRQRSGPSVPARGLFLKK 236
Query: 237 VGY 239
+ Y
Sbjct: 237 ICY 239
>gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
Length = 259
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPE 230
E +V+ + + A+ FLR MVR +V TLV E AG D +++ +++A R APP+
Sbjct: 192 ETEQVITISVEADGFLRHMVRNIVGTLV-EIGAGQDSSEIMRDILEAKDRGCAGITAPPQ 250
Query: 231 GLCLVDVGY 239
GL L V Y
Sbjct: 251 GLFLQKVSY 259
>gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
Length = 245
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++V TL+R + + + ++++A R+A APP GL L +
Sbjct: 182 ITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKEILEAKDRKAAGVTAPPHGLILAE 241
Query: 237 VGY 239
+ Y
Sbjct: 242 IRY 244
>gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
Length = 284
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +M +++V N FL MVR +V TLV D D + ++++A RR AP +GL
Sbjct: 218 GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENAPAQGL 277
Query: 233 CLVDVGY 239
V Y
Sbjct: 278 VFWRVIY 284
>gi|445114845|ref|ZP_21378052.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
gi|444840563|gb|ELX67592.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
Length = 260
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 37/91 (40%)
Query: 149 TECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADE 208
T C + AR + D+ E C + ANRFLR MVR +V TLV
Sbjct: 165 TICNLTEARWERCNTQLSIRDNVEEAGQWCFVITANRFLRNMVRAVVGTLVEVGRCRISP 224
Query: 209 DALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D K++D R P L L DV Y
Sbjct: 225 DEFQKIVDHGTRSDAGESMPGNALFLWDVEY 255
>gi|345520179|ref|ZP_08799579.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA]
gi|345456983|gb|EET16317.2| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA]
Length = 267
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
H E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 179 HAEWTQVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGS 238
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 239 SVPGHALFLVDVGY 252
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 138 DTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVAT 197
D +A +N G P + + + C + + G + + A+ FL +MVRV+ T
Sbjct: 154 DFRAFQNTGRPVKS------SVRTVFSCRLEEAG---PFLYFWIEADGFLYQMVRVIAGT 204
Query: 198 LVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
L+ + +L ++ R+ P APP GLCLV V Y DP
Sbjct: 205 LLEIGRGKLEPSVILAALEKGERQLLGPTAPPHGLCLVQVKYPQ-DP 250
>gi|148263121|ref|YP_001229827.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4]
gi|189030134|sp|A5GB00.1|TRUA_GEOUR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146396621|gb|ABQ25254.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4]
Length = 244
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ + FL+ MVR++ TL + DA+ L+ + R A+ APP+GLCLV+
Sbjct: 182 VIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDRAASGITAPPQGLCLVE 241
Query: 237 VGY 239
V Y
Sbjct: 242 VFY 244
>gi|419802716|ref|ZP_14327899.1| tRNA pseudouridine(38-40) synthase [Haemophilus parainfluenzae
HK262]
gi|419845016|ref|ZP_14368303.1| tRNA pseudouridine(38-40) synthase [Haemophilus parainfluenzae
HK2019]
gi|385189502|gb|EIF36965.1| tRNA pseudouridine(38-40) synthase [Haemophilus parainfluenzae
HK262]
gi|386416942|gb|EIJ31434.1| tRNA pseudouridine(38-40) synthase [Haemophilus parainfluenzae
HK2019]
Length = 264
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A PEGL L
Sbjct: 179 QYVIVDIQANAFVHHMVRNIVGSLIEVGAGKQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
V+V Y P+ IP
Sbjct: 239 VNVIY----PEKFAIP 250
>gi|110636905|ref|YP_677113.1| tRNA pseudouridine synthase A [Cytophaga hutchinsonii ATCC 33406]
gi|110279586|gb|ABG57772.1| pseudouridylate synthase I [Cytophaga hutchinsonii ATCC 33406]
Length = 248
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
LL Y+ F +K ++ C I+HA +G+ ++ + ANRFLR
Sbjct: 143 LLQYEDFESFSKVHTDV-TNFNCTIFHAYWER---------NGD---MLYFHVKANRFLR 189
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR LV T++ D ++++ A R+ APPE L L +V Y
Sbjct: 190 GMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYLSEVEY 240
>gi|295099211|emb|CBK88300.1| pseudouridylate synthase I [Eubacterium cylindroides T2-87]
Length = 243
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 88/243 (36%), Gaps = 78/243 (32%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K + P + A+N+ P IR++ VS + FH FSAK +RY YI E +
Sbjct: 67 KKIGPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKSKRYDYICTY---EKENPFVY 123
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE------------KPRNFTIC 116
E+ N HT NIE + E G+H+ KPR TI
Sbjct: 124 KYKEILN-HTL------------NIEAMRKASEYLVGTHDFTSFSSSKIDPRKPRIKTIT 170
Query: 117 RVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKV 176
R+++ + + + FIY G G
Sbjct: 171 RIDIFEENQDIR-----------------------FIY---------------EGTG--- 189
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
FLR VR++ TL+ + D + + +++D + A A P GL LV
Sbjct: 190 ---------FLRYQVRMMTETLIMVGSNKIDTEEVKRILDKKDKSACRYNASPNGLYLVH 240
Query: 237 VGY 239
V Y
Sbjct: 241 VNY 243
>gi|269468479|gb|EEZ80140.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium]
Length = 247
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR +V TL++ D + ++DA R+ A P+GL V
Sbjct: 182 ILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVKTVLDAKDRKQAGVTAEPQGLYFVK 241
Query: 237 VGYTNF 242
Y NF
Sbjct: 242 AFYDNF 247
>gi|218245114|ref|YP_002370485.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801]
gi|226708647|sp|B7K222.1|TRUA_CYAP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|218165592|gb|ACK64329.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801]
Length = 293
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + ++ R A AP +GLCL+ VG
Sbjct: 193 LEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLCLLRVG 252
Query: 239 YTNF 242
Y F
Sbjct: 253 YEEF 256
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 18 DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF 55
D +N+ P I + +QV +H FSA+WRRY Y F
Sbjct: 85 DILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRYTF 122
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|150005081|ref|YP_001299825.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482]
gi|149933505|gb|ABR40203.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482]
Length = 267
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
H E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 179 HAEWTQVSGTEWVFIIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGS 238
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 239 SVPGHALFLVDVGY 252
>gi|340348973|ref|ZP_08671997.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
gi|339612539|gb|EGQ17342.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
Length = 260
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 37/91 (40%)
Query: 149 TECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADE 208
T C + AR + D+ E C + ANRFLR MVR +V TLV
Sbjct: 165 TICNLTEARWERCNTQLSIRDNVEEAGQWCFVITANRFLRNMVRAVVGTLVEVGRYRISP 224
Query: 209 DALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D K++D R P L L DV Y
Sbjct: 225 DEFQKIVDHGTRSDAGESMPGNALFLWDVEY 255
>gi|294778889|ref|ZP_06744305.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510]
gi|294447198|gb|EFG15782.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510]
Length = 257
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
H E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 169 HAEWTQVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGS 228
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 229 SVPGHALFLVDVGY 242
>gi|403388244|ref|ZP_10930301.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 244
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 57/229 (24%)
Query: 13 PSD-IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEV 71
PS+ +DA+N P I V+ +V FH +S + ++Y Y E+ + + +
Sbjct: 71 PSEKFKDALNVKLPDDIAVLKSEEVPEEFHSRYSCRGKKYSYTI-------LERPMKATI 123
Query: 72 EVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTI-CRVNLLLQRLEGKLL 130
+ RN+ C+ NL ++++ +
Sbjct: 124 D--------------------------------------RNYVCQCKYNLDIEKM-NEAC 144
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
Y D A +N G + + I V G K+ + A+ FL M
Sbjct: 145 KYFIGTHDFSAFKNKGSSVKT------SVRTISELYVEKTGNYVKIF---VSADGFLYNM 195
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VR++V TL+ + ++ ++D+ R PP+GLCL +V Y
Sbjct: 196 VRIIVGTLIDVGIGKINPKSIKNIIDSKERTNAGKSMPPQGLCLEEVYY 244
>gi|394989212|ref|ZP_10382046.1| hypothetical protein SCD_01631 [Sulfuricella denitrificans skB26]
gi|393791631|dbj|GAB71685.1| hypothetical protein SCD_01631 [Sulfuricella denitrificans skB26]
Length = 261
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
KV+ + AN FL MVR LV +LV +L+L++ R +AP P+GL L
Sbjct: 179 KVILFDFTANAFLHHMVRNLVGSLVYVGKGKHSPAWMLELLENRNRIHSAPTFAPDGLYL 238
Query: 235 VDVGYTNFDPQNSL 248
+GY DP+ ++
Sbjct: 239 AGIGY---DPKWAI 249
>gi|319642589|ref|ZP_07997236.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A]
gi|317385823|gb|EFV66755.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A]
Length = 251
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
H E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 163 HAEWTQVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGS 222
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 223 SVPGHALFLVDVGY 236
>gi|308233892|ref|ZP_07664629.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
gi|328943600|ref|ZP_08241065.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
gi|327491569|gb|EGF23343.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
Length = 311
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
D+ G +++ +++ N FL MVR++ A+L+ D + ++ R A A AP
Sbjct: 230 DYIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQDVLRQQTRTAAAMTAP 289
Query: 229 PEGLCLVDVGYTNFDPQNSLIP 250
+GL L VGY P L+P
Sbjct: 290 AQGLTLERVGY----PAGLLVP 307
>gi|257058139|ref|YP_003136027.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802]
gi|256588305|gb|ACU99191.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802]
Length = 293
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + ++ R A AP +GLCL+ VG
Sbjct: 193 LEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLCLLRVG 252
Query: 239 YTNF 242
Y F
Sbjct: 253 YEEF 256
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 18 DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF 55
D +N+ P I + +QV +H FSA+WRRY Y F
Sbjct: 85 DILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRYTF 122
>gi|428768895|ref|YP_007160685.1| tRNA pseudouridine synthase A [Cyanobacterium aponinum PCC 10605]
gi|428683174|gb|AFZ52641.1| tRNA pseudouridine synthase A [Cyanobacterium aponinum PCC 10605]
Length = 274
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP-PAPPEGLCLVDV 237
+E+ A+ FL MVR+LV LV E AG + + CRR AP +GLCL+ V
Sbjct: 194 IEIQASGFLYGMVRLLVGMLV-EVGAGTKSLTQFQDIWMNCRREEVKYSAPAKGLCLLRV 252
Query: 238 GYTNF 242
GY F
Sbjct: 253 GYPEF 257
>gi|225028683|ref|ZP_03717875.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353]
gi|224953993|gb|EEG35202.1| tRNA pseudouridine synthase A [Eubacterium hallii DSM 3353]
Length = 253
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR+LV TL+ + + ++++A R+ P AP +GLCL+ V Y
Sbjct: 200 FLQNMVRILVGTLLEVGKGKIKPEQIPEILEAKNRQMAGPTAPAQGLCLIKVDY 253
>gi|423311978|ref|ZP_17289915.1| tRNA pseudouridine synthase A [Bacteroides vulgatus CL09T03C04]
gi|392689357|gb|EIY82635.1| tRNA pseudouridine synthase A [Bacteroides vulgatus CL09T03C04]
Length = 267
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
H E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 179 HAEWTQVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGS 238
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 239 SVPGHALFLVDVGY 252
>gi|27365335|ref|NP_760863.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6]
gi|37680609|ref|NP_935218.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016]
gi|320155720|ref|YP_004188099.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|31340462|sp|Q8CWK3.1|TRUA_VIBVU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42559737|sp|Q7M7J4.1|TRUA_VIBVY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|27361482|gb|AAO10390.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6]
gi|37199357|dbj|BAC95189.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016]
gi|319931032|gb|ADV85896.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 264
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V HG + +++ AN F+ MVR + +L+ D + + L++A R+ P
Sbjct: 174 VTRHGH---YVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPT 230
Query: 227 APPEGLCLVDVGY-TNFD-PQNSLIP 250
A EGL LVDV Y FD P+ S+ P
Sbjct: 231 AKAEGLYLVDVDYPEEFDLPRESIGP 256
>gi|240144416|ref|ZP_04743017.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|257203524|gb|EEV01809.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
Length = 294
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
K SY D K+ IG + + I C V G+ ++ + + N FL
Sbjct: 188 KAASYLEGEHDFKSFCAIGAQVKTTV------RTIYACDVEKEGD---IITIRVTGNGFL 238
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
MVR++ TLV+ +A+ ++ R A P AP GL ++ + + N +
Sbjct: 239 YNMVRIIAGTLVQVGGGAIKPEAVKGILAKKDRSAAGPTAPAHGLTMMGIEFENVE 294
>gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
Length = 245
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+E+V N FL KM+R+LV TL++ D + +MD R AP GL L +
Sbjct: 183 IEIVFSGNGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPETAPAHGLTLTE 242
Query: 237 VGY 239
V Y
Sbjct: 243 VKY 245
>gi|194477033|ref|YP_002049212.1| tRNA pseudouridine synthase A [Paulinella chromatophora]
gi|171192040|gb|ACB43002.1| tRNA pseudouridine synthase A [Paulinella chromatophora]
Length = 252
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL MVR++VA LV E L + CR AP +GLCL+
Sbjct: 184 ITLEIQASGFLYGMVRLMVAQLVEVGEGRLTESNLEQRWRQHCRGQIKEAAPAQGLCLLQ 243
Query: 237 VGY 239
VGY
Sbjct: 244 VGY 246
>gi|347761820|ref|YP_004869381.1| tRNA pseudouridine synthase A [Gluconacetobacter xylinus NBRC 3288]
gi|347580790|dbj|BAK85011.1| tRNA pseudouridine synthase A [Gluconacetobacter xylinus NBRC 3288]
Length = 270
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG V+ +E A FL VR + TL + + ++ + A RRA P APPEG
Sbjct: 197 EGEYVV-IEAGARSFLHHQVRNMAGTLKLVGEGRWEPEQVVHALAACDRRAAGPTAPPEG 255
Query: 232 LCLVDVGY 239
LCL VGY
Sbjct: 256 LCLTGVGY 263
>gi|339441705|ref|YP_004707710.1| pseudouridylate synthase [Clostridium sp. SY8519]
gi|338901106|dbj|BAK46608.1| pseudouridylate synthase [Clostridium sp. SY8519]
Length = 250
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ + + + FL MVR++ TL+R + DA+ ++ A R P APP+GL ++
Sbjct: 181 VVTIRVSGSGFLYNMVRIIAGTLIRVGSGQMAADAVPGILAACDREKAGPTAPPQGLTMI 240
Query: 236 DVGY 239
+ Y
Sbjct: 241 GIDY 244
>gi|428781726|ref|YP_007173512.1| pseudouridylate synthase I [Dactylococcopsis salina PCC 8305]
gi|428696005|gb|AFZ52155.1| pseudouridylate synthase I [Dactylococcopsis salina PCC 8305]
Length = 277
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL MVR+LV LV+ +A ++ R AP +GLCL+
Sbjct: 190 IVEIEIQADGFLYGMVRLLVGMLVKVGTGELSTEAFREIWQEKQRDRVKYSAPAKGLCLL 249
Query: 236 DVGYTNF 242
VGY F
Sbjct: 250 RVGYEEF 256
>gi|302670312|ref|YP_003830272.1| tRNA pseudouridine synthase A [Butyrivibrio proteoclasticus B316]
gi|302394785|gb|ADL33690.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus
B316]
Length = 265
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL+ MVR+L TL+ + + ++ A R+ P A PEGLC++ V Y
Sbjct: 209 GNGFLQNMVRILTGTLLEVGYGNISPEKIQDILKACDRKKAGPTARPEGLCMMKVDY 265
>gi|320537307|ref|ZP_08037262.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421]
gi|320145772|gb|EFW37433.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421]
Length = 261
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+ + E+ AN FL +MVR L TL+R ++ K+++ R P APP+GL
Sbjct: 188 KDFLVFEISANAFLWRMVRSLTGTLLRCEKEHYTQNDFKKILELKDRGLAGPTAPPQGLF 247
Query: 234 LVDVGY 239
L + Y
Sbjct: 248 LWHITY 253
>gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 248
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPSHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|158334430|ref|YP_001515602.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017]
gi|359463596|ref|ZP_09252159.1| tRNA pseudouridine synthase A [Acaryochloris sp. CCMEE 5410]
gi|158304671|gb|ABW26288.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017]
Length = 292
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 166 PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
P + + ++ +E+ A+ FL M+R+LV LV+ D+ +L A R
Sbjct: 187 PTVEAKDSSPLIQIEVQASGFLYGMMRLLVGLLVQVGRGLRSPDSFTELWQAERRDQVKY 246
Query: 226 PAPPEGLCLVDVGYTNF 242
AP +GLCL+ VGY +F
Sbjct: 247 SAPAKGLCLLRVGYPDF 263
>gi|126658015|ref|ZP_01729167.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110]
gi|126620653|gb|EAZ91370.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110]
Length = 285
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +E+ AN FL MVR+LV LV + ++ R AP +GLCL
Sbjct: 190 QFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLTNFTEIWQNQRREQVKYSAPAKGLCL 249
Query: 235 VDVGYTNF 242
+ VGY NF
Sbjct: 250 LRVGYPNF 257
>gi|261855761|ref|YP_003263044.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2]
gi|261836230|gb|ACX95997.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2]
Length = 271
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+N H +G V +++ AN FL MVR +V TL+ A D+L ++ A R A
Sbjct: 173 LNIHRQGEYVY-MDITANAFLHHMVRNIVGTLLPVGAGERPADSLWDILQAKDRSAAGMT 231
Query: 227 APPEGLCLVDVGY 239
AP +GL LV V Y
Sbjct: 232 APADGLYLVGVRY 244
>gi|37523138|ref|NP_926515.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421]
gi|42559743|sp|Q7MBB9.1|TRUA_GLOVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|35214141|dbj|BAC91510.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421]
Length = 304
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG ++ + + AN FL M+R+L+ L + + L A R APP+G
Sbjct: 192 EGEQI-AIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQG 250
Query: 232 LCLVDVGYTNFDP 244
LCLV VGY + DP
Sbjct: 251 LCLVGVGYPD-DP 262
>gi|421252179|ref|ZP_15707940.1| tRNA pseudouridine synthase A, partial [Pasteurella multocida
subsp. multocida str. Anand1_buffalo]
gi|401696620|gb|EJS89318.1| tRNA pseudouridine synthase A, partial [Pasteurella multocida
subsp. multocida str. Anand1_buffalo]
Length = 222
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G + + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PE
Sbjct: 153 GRRGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPE 212
Query: 231 GLCLVDVGY 239
GL LV+V Y
Sbjct: 213 GLYLVNVSY 221
>gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|24212547|sp|Q8XLQ0.1|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 248
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|414341254|ref|YP_006982775.1| TruA [Gluconobacter oxydans H24]
gi|411026589|gb|AFV99843.1| TruA [Gluconobacter oxydans H24]
Length = 259
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+N + EG V+ V+ A FL VR +V +LV + + + +++A R A P
Sbjct: 182 LNIYREGELVI-VDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEAKNRCAAGPT 240
Query: 227 APPEGLCLVDVGY 239
+PP+GLCL VGY
Sbjct: 241 SPPDGLCLTGVGY 253
>gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
Length = 249
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
FL MVR+LV T ++ + + + ++++A R A P AP GL L +V Y NFD
Sbjct: 192 FLYNMVRILVGTALQIGDGLREVEEMKQILEAMDRNAAGPTAPSHGLYLDEVFYKNFD 249
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 7 WRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY 53
+ K ++ + + A+NS P IR++S VS FH +S +RY+Y
Sbjct: 67 YPKRIEANSLVRAMNSLLPTSIRIVSAEAVSEEFHARYSVTGKRYIY 113
>gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 245
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ + + N FL MVR++ TL++ + + +L+ + R+A P AP +GL
Sbjct: 179 RELIVIRIKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGPTAPAKGLT 238
Query: 234 LVDVGY 239
LV++ Y
Sbjct: 239 LVEIEY 244
>gi|452994850|emb|CCQ93516.1| tRNA pseudouridine synthase A [Clostridium ultunense Esp]
Length = 244
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + N FL MVR+++ TLV + D++ ++ + R A APPEGL L
Sbjct: 181 LIIFSIEGNGFLYNMVRIIIGTLVEIGSGKLKSDSIPYIIHSKNREAAGYTAPPEGLYLE 240
Query: 236 DVGY 239
V Y
Sbjct: 241 KVFY 244
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|48374280|gb|AAT41969.1| putative t-RNA pseudouridine synthase I [Fremyella diplosiphon
Fd33]
Length = 268
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL MVR+LV LV+ +L A R AP +GLCL+
Sbjct: 177 LIHIEIQADGFLYGMVRLLVGMLVQVGTGQRTLANFTELWKAERREEVKYAAPAQGLCLL 236
Query: 236 DVGYTNF 242
VGY +F
Sbjct: 237 RVGYPDF 243
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 248
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
Length = 248
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>gi|315640131|ref|ZP_07895253.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952]
gi|315484108|gb|EFU74582.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952]
Length = 248
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H E + + FL KM+R+LV TL++ +E +L K++ + R P A P
Sbjct: 179 HDEALSELVFTFRGDGFLYKMIRILVGTLLKIGNGRLEETSLPKIIASKDRNCAGPTAHP 238
Query: 230 EGLCLVDVGY 239
EGL L +V Y
Sbjct: 239 EGLYLKEVKY 248
>gi|410657269|ref|YP_006909640.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|410660306|ref|YP_006912677.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
gi|409019624|gb|AFV01655.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|409022662|gb|AFV04692.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
Length = 239
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E + ++ +E N FL M+R++V TL+ + + K++ R P A +G
Sbjct: 172 ENKGLIKIEFNGNSFLWNMLRIIVGTLLEVGKGTLQPNDVEKILQEKKRWEARPLAQAKG 231
Query: 232 LCLVDVGY 239
LCLVDV Y
Sbjct: 232 LCLVDVQY 239
>gi|399923650|ref|ZP_10781008.1| tRNA pseudouridine synthase A [Peptoniphilus rhinitidis 1-13]
Length = 243
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E K + ++ V FL+ M+R++ T + + + + K ++ R+A P AP G
Sbjct: 176 EDGKFLYIDFVGKSFLKNMIRIVAGTTLEIGRGQREIEYMRKALEEKNRKAAGPTAPACG 235
Query: 232 LCLVDVGY 239
L LVDV Y
Sbjct: 236 LYLVDVKY 243
>gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687621|sp|B0K5S6.1|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687718|sp|B0KCN3.1|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 244
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TL ED + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLIKII 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
>gi|168705501|ref|ZP_02737778.1| tRNA pseudouridine synthase A [Gemmata obscuriglobus UQM 2246]
Length = 263
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
+ I VN GE + +++ AN FL MVR + +LV+ E + ++ A
Sbjct: 167 SVRTITHLSVNRFGE---CIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHA 223
Query: 218 TCRRATAPPAPPEGLCLVDVGY 239
RR P APPEGL L+ V Y
Sbjct: 224 MDRRLAGPTAPPEGLFLMRVTY 245
>gi|166033550|ref|ZP_02236379.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC
27755]
gi|346309044|ref|ZP_08851147.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
gi|166026735|gb|EDR45492.1| tRNA pseudouridine synthase A [Dorea formicigenerans ATCC 27755]
gi|345901288|gb|EGX71091.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
Length = 266
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 168 NDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPA 227
N + E K + + + N FL MVR++ TL+R + + + +++A + A
Sbjct: 193 NSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRDILEAKEHTSEGITA 252
Query: 228 PPEGLCLVDVGY 239
PP GL LV + Y
Sbjct: 253 PPNGLVLVSIDY 264
>gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL+ MVR+L TLV + + +++ R+ P APP GLCL+ V Y
Sbjct: 190 GNGFLQNMVRILTGTLVEVGYGNMSAEHIPEIIAGMDRQLAGPTAPPHGLCLMKVEY 246
>gi|291515704|emb|CBK64914.1| pseudouridylate synthase I [Alistipes shahii WAL 8301]
Length = 259
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+ R MC + A+RFLR MVR LV TLV D ++++ ++ AP +G
Sbjct: 176 DSRGTMCFTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFRSIVESRDLSRSSAGAPAQG 235
Query: 232 LCLVDVGY 239
L L DV Y
Sbjct: 236 LFLSDVVY 243
>gi|256827610|ref|YP_003151569.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641]
gi|256583753|gb|ACU94887.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641]
Length = 273
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +V+C++++ + FL MVR + TLV + +++ A R A AP GL
Sbjct: 190 GDEVVCIDIIGSSFLHSMVRTIAGTLVAVGRGLRPPSWMAEVLAACDRTAAGEKAPAAGL 249
Query: 233 CLVDVGYTNFDPQNSL 248
DV Y N P +
Sbjct: 250 VFWDVDYGNVLPSDGF 265
>gi|114562572|ref|YP_750085.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400]
gi|122300225|sp|Q084R8.1|TRUA_SHEFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114333865|gb|ABI71247.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400]
Length = 261
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VN +G VM V++ AN FL MVR +V +L++ + + +L R+ AP
Sbjct: 172 VNVTRQGMYVM-VDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPT 230
Query: 227 APPEGLCLVDVGYTNFDPQNSLIP 250
A P GL LVDV Y P++ +P
Sbjct: 231 AKPNGLYLVDVTY----PEHYQLP 250
>gi|154498331|ref|ZP_02036709.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC
29799]
gi|150272642|gb|EDM99820.1| tRNA pseudouridine synthase A [Pseudoflavonifractor capillosus ATCC
29799]
Length = 249
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ AN FL MVR +V T V A +A+ +++ CR A P APP GL + + Y
Sbjct: 186 VCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLYMTKLWY 244
>gi|451982071|ref|ZP_21930405.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
gi|451760736|emb|CCQ91683.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
Length = 258
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR LV TL+ + D + ++ A R+ P AP GLCLV+V Y
Sbjct: 191 FLKHMVRNLVGTLIEVGYGRIEPDDIKAILKARDRKKAGPTAPARGLCLVEVFY 244
>gi|390948446|ref|YP_006412206.1| pseudouridylate synthase I [Alistipes finegoldii DSM 17242]
gi|390425015|gb|AFL79521.1| pseudouridylate synthase I [Alistipes finegoldii DSM 17242]
Length = 254
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 127 GKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRF 186
LL Y F K + N C I HA T + R V+C + A+RF
Sbjct: 143 ASLLEYDDFTSFAKLNSN-NKTNICRIMHAAWT-----------ADERGVLCFTIRADRF 190
Query: 187 LRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
LR MVR LV TLV D +++ + ++ AP +GL L DV Y
Sbjct: 191 LRNMVRSLVGTLVDVGRGRYTPDGFREIVGSRDLSRSSGGAPAQGLFLSDVVY 243
>gi|334366017|ref|ZP_08514961.1| tRNA pseudouridine synthase A [Alistipes sp. HGB5]
gi|313157719|gb|EFR57130.1| tRNA pseudouridine synthase A [Alistipes sp. HGB5]
Length = 257
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 127 GKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRF 186
LL Y F K + N C I HA T + R V+C + A+RF
Sbjct: 146 ASLLEYDDFTSFAKLNSN-NKTNICRIMHAAWT-----------ADERGVLCFTIRADRF 193
Query: 187 LRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
LR MVR LV TLV D +++ + ++ AP +GL L DV Y
Sbjct: 194 LRNMVRSLVGTLVDVGRGRYTPDGFREIVGSRDLSRSSGGAPAQGLFLSDVVY 246
>gi|343083500|ref|YP_004772795.1| tRNA pseudouridine synthase A [Cyclobacterium marinum DSM 745]
gi|342352034|gb|AEL24564.1| tRNA pseudouridine synthase A [Cyclobacterium marinum DSM 745]
Length = 277
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 150 ECFIYHARATEA-ILPCPVNDHG--EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGA 206
ECF R T+ C +N+ + + + ANRFLR MVR +V TLV+
Sbjct: 181 ECF--SRRKTDVKTFICEINNASWEQTSNGLVFHIQANRFLRGMVRAIVGTLVKVGRGHL 238
Query: 207 DEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+ +++ + R AP GL L V Y
Sbjct: 239 ESVAMSEIISSKDRNLAGSSAPAHGLFLSKVNY 271
>gi|339051056|ref|ZP_08647847.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
Length = 269
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 58/221 (26%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSN 80
N+ P IRV V FH FSA RRY+Y+ +EN
Sbjct: 88 NTHLPDSIRVRWAKFVPEDFHARFSAMARRYIYV------------------IEN----- 124
Query: 81 NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK--LLSYKTFARD 138
+ + ++N F + R + R+ L L G+ SY+T
Sbjct: 125 ----------TPVHSAIMNKHFSF----EDRPLDVERMQLAANYLVGEHDFSSYRTVRCQ 170
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
K+ A + + V HG ++ +++ AN FL MVR + L
Sbjct: 171 AKS----------------AIKTVHHLKVERHGS---LIAIDIYANAFLHHMVRNVAGVL 211
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+ +++DA R APP GL LV V Y
Sbjct: 212 MMVGMGKAEPVWAKQVLDARDRTVGGVTAPPNGLYLVGVDY 252
>gi|257457999|ref|ZP_05623158.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580]
gi|257444712|gb|EEV19796.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580]
Length = 265
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVR-EAAAGADED--ALLKLMDATCRRATAPPAPPE 230
R + E+ AN FL +MVR + TL+ E G ED A+L+ D RR APP+
Sbjct: 193 RDFLVFEISANAFLWRMVRSVTGTLLHYEQQNGTKEDFEAVLRSKD---RRNAGETAPPQ 249
Query: 231 GLCLVDVGYTNFDPQNSLIP 250
GL L + Y PQ L P
Sbjct: 250 GLFLWSIDY----PQQLLTP 265
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYI 54
+KP A+NSA P +R+I + VS H FSA+ R Y Y
Sbjct: 84 IKPESFVPALNSALPKDVRIIEAAHVSDNLHARFSARSRTYRYF 127
>gi|444909640|ref|ZP_21229830.1| tRNA pseudouridine synthase A [Cystobacter fuscus DSM 2262]
gi|444720012|gb|ELW60799.1| tRNA pseudouridine synthase A [Cystobacter fuscus DSM 2262]
Length = 264
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ GE R V+ + FL+ MVR LV +LV D + +++ A R+ P
Sbjct: 173 VDIQGESRGVLSFTVEGTAFLKHMVRNLVGSLVEVGKGRRSPDWVAEVLAARNRKRAGPT 232
Query: 227 APPEGLCLVDVGYTNFDPQNS 247
AP GL L +V Y P S
Sbjct: 233 APAHGLVLEEVFYGEGPPPRS 253
>gi|374814053|ref|ZP_09717790.1| tRNA pseudouridine synthase A [Treponema primitia ZAS-1]
Length = 252
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
+ E+ AN FL KMVR +V TL+ G + L ++++ R P PP GL L
Sbjct: 186 TLIFEIQANAFLWKMVRSVVGTLLHYEEKGKSPEELKRIIETGDRSMAGPTVPPNGLFLW 245
Query: 236 DVGY 239
V Y
Sbjct: 246 KVEY 249
>gi|281420165|ref|ZP_06251164.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205]
gi|281405965|gb|EFB36645.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205]
Length = 247
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 81/236 (34%), Gaps = 55/236 (23%)
Query: 4 LDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENR 63
DT R ++P + +N P I V V +V+ H FSA R Y Y
Sbjct: 63 FDTDRIPMEPDQLVYRLNRILPRDIAVYEVMEVAPEMHARFSAISRTYHYYI-------- 114
Query: 64 EQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQ 123
HT + +E +L +N P NF ++N Q
Sbjct: 115 -------------HTQKD-------PFERHYSLQMN---------YPLNFE--KMNEAAQ 143
Query: 124 RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVA 183
L ++ +A KA G + I H A I P E+ A
Sbjct: 144 HF----LHHEDYAAFCKA----GGDNKTTICHVTAARWIQTSPT--------TWYFEITA 187
Query: 184 NRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
NRFLR MVR +V TL+ + L ++ R P L L DVGY
Sbjct: 188 NRFLRNMVRAVVGTLIDVGREKITMEQFLDILHNGSRSDAGESMPGNALFLEDVGY 243
>gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 246
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++ + FL+ MVR+LV TLV +++ ++++ R APP+GL LV
Sbjct: 182 LQIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILESKSREKAGFTAPPQGLILVS 241
Query: 237 VGY 239
V Y
Sbjct: 242 VRY 244
>gi|434388560|ref|YP_007099171.1| pseudouridylate synthase I [Chamaesiphon minutus PCC 6605]
gi|428019550|gb|AFY95644.1| pseudouridylate synthase I [Chamaesiphon minutus PCC 6605]
Length = 280
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ H G V +E+ AN FL MVR+LV L++ K+ R
Sbjct: 187 VSCHQSGDFVQ-IEIQANGFLYGMVRLLVGLLIQVGNGDLSIAEFTKIWQTEQRSQVRHS 245
Query: 227 APPEGLCLVDVGYTNF 242
AP +GLCL+ VGY +F
Sbjct: 246 APAKGLCLLRVGYPDF 261
>gi|374374593|ref|ZP_09632251.1| tRNA pseudouridine synthase A [Niabella soli DSM 19437]
gi|373231433|gb|EHP51228.1| tRNA pseudouridine synthase A [Niabella soli DSM 19437]
Length = 250
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++ ANRFLR MVR LVAT+++ D +L++ A AP GL L+
Sbjct: 178 LYYQVTANRFLRGMVRALVATMLKVGRGRLSMDGFRQLLETPRFGAAFFDAPAHGLTLMK 237
Query: 237 VGY 239
V Y
Sbjct: 238 VNY 240
>gi|313205364|ref|YP_004044021.1| tRNA pseudouridine synthase a [Paludibacter propionicigenes WB4]
gi|312444680|gb|ADQ81036.1| tRNA pseudouridine synthase A [Paludibacter propionicigenes WB4]
Length = 251
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 84/226 (37%), Gaps = 58/226 (25%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
D+ +NS PG I + +++V H F A RRY Y
Sbjct: 76 DLVAKLNSFLPGDISIYKIAEVKPDAHARFDAISRRYEY--------------------- 114
Query: 75 NFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKT 134
+ T+ NV K E+ D+ F + +NL + L +K
Sbjct: 115 HIFTNKNVFKNELAVRES-------DKLDFEA-----------MNLAAK----TLTKFKD 152
Query: 135 FARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRK-VMCVELVANRFLRKMVRV 193
F +K ++ C I+HA T+ +G + V +E A+RFLR MVR
Sbjct: 153 FTSFSKLHTDV-KTNNCQIHHAEWTQ-----------QGDEWVFTIE--ADRFLRNMVRA 198
Query: 194 LVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+V TL + D ++ A R P GL LVD+ Y
Sbjct: 199 IVGTLFEVGRRKMNTDEFATVIAAKNRCKAGVSVPAHGLYLVDIKY 244
>gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
Length = 245
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++V TL+R + + ++++A R+A APP GL L++
Sbjct: 182 ITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPVQVKEILEAKNRKAAGVTAPPHGLMLME 241
Query: 237 VGY 239
+ Y
Sbjct: 242 IRY 244
>gi|357039717|ref|ZP_09101509.1| tRNA pseudouridine synthase A [Desulfotomaculum gibsoniae DSM 7213]
gi|355357523|gb|EHG05296.1| tRNA pseudouridine synthase A [Desulfotomaculum gibsoniae DSM 7213]
Length = 247
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL MVR++ TL++ A D++ L+++ R P PP+GLCL V Y
Sbjct: 194 FLYNMVRIMTGTLLQVGMGKASPDSIRNLLESRQRAQAGPTMPPQGLCLEHVEY 247
>gi|296121106|ref|YP_003628884.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776]
gi|296013446|gb|ADG66685.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776]
Length = 305
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 89/245 (36%), Gaps = 65/245 (26%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSI 67
V ++ A+ P I + V V FH F A+ + Y Y+F P+ R+ ++
Sbjct: 74 VPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVWSPFYRQYAL 133
Query: 68 DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRV--NLLLQRL 125
++ E+ +F I ++ + L
Sbjct: 134 WHRTRLD---------------------------------EQAMDFAIRQIVGTFDFRSL 160
Query: 126 EGKLLSYKTFARDT-KAS----RNI------GPPTECFIYHARATEAILPCPVNDHGEGR 174
E + + KT R KAS RN GPP+E C ++ GE
Sbjct: 161 ETQWPNRKTSVRTVIKASVQRIRNWNLLGENGPPSE-------------ECQLDPEGE-- 205
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+C+E+ AN FL MVR + TL+ + L +++D RR AP GL L
Sbjct: 206 -FLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREIVDLQDRRRAGETAPAHGLYL 264
Query: 235 VDVGY 239
V Y
Sbjct: 265 WHVDY 269
>gi|294621110|ref|ZP_06700301.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317]
gi|425032645|ref|ZP_18437671.1| tRNA pseudouridine synthase A [Enterococcus faecium 515]
gi|431776408|ref|ZP_19564670.1| tRNA pseudouridine synthase A [Enterococcus faecium E2560]
gi|291599346|gb|EFF30372.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317]
gi|403012402|gb|EJY25629.1| tRNA pseudouridine synthase A [Enterococcus faecium 515]
gi|430640959|gb|ELB76780.1| tRNA pseudouridine synthase A [Enterococcus faecium E2560]
Length = 73
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL KM+R+LV TL++ ED++ ++ R A P A PEGL L +V Y
Sbjct: 16 GNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKY 72
>gi|363898118|ref|ZP_09324654.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
gi|361957227|gb|EHL10538.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
Length = 253
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 104 FGSHEKPRNFTICRV---NLLLQRLEGKLLSYKTFARDT----------KASRNI----G 146
F +H K ++I R N L QRL + TF D K N
Sbjct: 104 FTTHTKEYRYSIDRARVENPLFQRL----YYHYTFPLDLVKIREGIEILKGEHNFTSFAN 159
Query: 147 PPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGA 206
P + + A I + + GE + + N FL M+R+L TL+
Sbjct: 160 PKAQTLLQGGSAVRCITDFRLEEEGE---YLHFTVKGNGFLYHMIRILCGTLLEVGRGRI 216
Query: 207 DEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
AL +++ RR P AP +GLCL+ + Y +
Sbjct: 217 SPSALSEILAGRDRRLAGPTAPAKGLCLLYLDYGD 251
>gi|402813896|ref|ZP_10863490.1| tRNA pseudouridine synthase A [Paenibacillus alvei DSM 29]
gi|402507743|gb|EJW18264.1| tRNA pseudouridine synthase A [Paenibacillus alvei DSM 29]
Length = 266
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EGR + + + N FL MVR++ T++R + ++++A R+ P A P+G
Sbjct: 185 EGRGRIHIVVTGNGFLYNMVRIIAGTMIRVGQGKLAPHDIPRILEAKNRQVAGPLAVPQG 244
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 245 LMLWSVEY 252
>gi|418020553|ref|ZP_12659801.1| pseudouridylate synthase I [Candidatus Regiella insecticola R5.15]
gi|347604092|gb|EGY28810.1| pseudouridylate synthase I [Candidatus Regiella insecticola R5.15]
Length = 281
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ VE+ AN FL MVR +V +L+ +ED L +L+ R+ A A EGL LV
Sbjct: 185 IVVEIKANAFLHHMVRNIVGSLIEVGCGRQNEDWLKQLLALKDRKQAAATAKAEGLYLVA 244
Query: 237 VGY-TNFD-PQNSL 248
V Y F PQ SL
Sbjct: 245 VDYPACFALPQTSL 258
>gi|39997968|ref|NP_953919.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA]
gi|409913323|ref|YP_006891788.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
KN400]
gi|42559718|sp|P60350.1|TRUA_GEOSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|39984913|gb|AAR36269.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
PCA]
gi|298506909|gb|ADI85632.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
KN400]
Length = 244
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 54/224 (24%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
D +N+ P I V S + F+P F+A + Y Y ++ GE R V +++
Sbjct: 75 FSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYT--IHRGERRS----PLVRLQS 128
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+H + NL R + L T
Sbjct: 129 WHVRGAL------------------------------------NLAAMREAARHL---TG 149
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
RD + R G I A E ++D GE ++ V++ + FLR MVR++V
Sbjct: 150 ERDFASFRTAGCAARTTIRRVDAVE------ISDDGE---MLTVDVHGSGFLRNMVRIMV 200
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
TLV + + +++ P APP+GLCL V +
Sbjct: 201 GTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLCLQKVRF 244
>gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4]
Length = 251
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ LV N FL MVR+++ L+ + ++++A RRA AP +G
Sbjct: 180 EEENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKTAPAQG 239
Query: 232 LCLVDVGYTN 241
L L V Y+N
Sbjct: 240 LYLYRVKYSN 249
>gi|387771698|ref|ZP_10127856.1| tRNA pseudouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386908558|gb|EIJ73251.1| tRNA pseudouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 261
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLV 235
+ V++ AN F+ MVR +V +L+ E GA +K L++ R+ AP A EGL LV
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLI-EVGKGAQPIEWIKWLLEQKDRKLAAPTAKAEGLYLV 239
Query: 236 DVGYTNFDPQNSLIP 250
DV Y P++ IP
Sbjct: 240 DVHY----PEHFGIP 250
>gi|343519659|ref|ZP_08756638.1| tRNA pseudouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343392506|gb|EGV05072.1| tRNA pseudouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 261
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALL-KLMDATCRRATAPPAPPEG 231
GR V+ V++ AN F+ MVR +V +L+ E AG A + +L+ RR AP A P G
Sbjct: 178 GRYVV-VDIQANAFVHHMVRNIVGSLL-EVGAGHQPVAWIGELLAQKDRRLAAPTAKPYG 235
Query: 232 LCLVDVGY-TNFD-PQNSLIP 250
L LV VGY F PQ L P
Sbjct: 236 LYLVQVGYPARFAIPQTPLGP 256
>gi|333892487|ref|YP_004466362.1| tRNA pseudouridine synthase A [Alteromonas sp. SN2]
gi|332992505|gb|AEF02560.1| tRNA pseudouridine synthase A [Alteromonas sp. SN2]
Length = 263
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 87/240 (36%), Gaps = 74/240 (30%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFP--------LNDGENREQSIDSE 70
IN+ P I V VS FH FSA RRY Y+ L++G E E
Sbjct: 78 GINANMPDTIAVTWAKPVSDDFHARFSATHRRYRYVIYNSRMRPAILHNGVTHEYR---E 134
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
++ E H E + L+ G H+ FT R +L + + +
Sbjct: 135 LDAEKMH-------------EAAQALV-------GEHD----FTTFRASLCQSKTPHRTV 170
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
S V+ H +GR V+ +++ AN FL M
Sbjct: 171 S----------------------------------SVSVHRQGRYVV-LDIRANAFLHHM 195
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
VR + +L+ A D + L+ R A A P GL LVDV Y P++ IP
Sbjct: 196 VRNITGSLLCIGAGEQPVDWMAHLLTLKDRAKAATTAKPNGLYLVDVTY----PEHFGIP 251
>gi|385331570|ref|YP_005885521.1| tRNA pseudouridine synthase A [Marinobacter adhaerens HP15]
gi|311694720|gb|ADP97593.1| tRNA pseudouridine synthase A [Marinobacter adhaerens HP15]
Length = 302
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R + +++ AN FL MVR + L+ + + + +++ A R A APP GL
Sbjct: 195 RDFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVARDRTAAGVTAPPHGLY 254
Query: 234 LVDVGYTNFDPQNSLIP 250
LVDVGY P+ IP
Sbjct: 255 LVDVGY----PEEFGIP 267
>gi|119775285|ref|YP_928025.1| tRNA pseudouridine synthase A [Shewanella amazonensis SB2B]
gi|166229832|sp|A1S7J9.1|TRUA_SHEAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119767785|gb|ABM00356.1| pseudouridylate synthase [Shewanella amazonensis SB2B]
Length = 261
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ HG + V++ AN FL MVR +V +L+ D + L++A R A
Sbjct: 174 VSRHG---MYIVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAAT 230
Query: 227 APPEGLCLVDVGY 239
A P GL LVDV Y
Sbjct: 231 AKPHGLYLVDVTY 243
>gi|229829433|ref|ZP_04455502.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM
14600]
gi|229791864|gb|EEP27978.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM
14600]
Length = 325
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR+LV TL+ + K+++A R+A P AP GLCL+ V Y
Sbjct: 271 FLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDY 324
>gi|90416037|ref|ZP_01223970.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC2207]
gi|90332411|gb|EAS47608.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC2207]
Length = 285
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+ +++ E+ AN F+ MVR ++ +L+ D + +L+ R +A A P+G
Sbjct: 200 QAGELIVFEVTANAFVLHMVRNIIGSLMEVGFGRRDPGWIGQLIKGRDRTKSAATASPKG 259
Query: 232 LCLVDVGYTNFDPQNSLIP 250
L LV VGY N DP L+P
Sbjct: 260 LYLVQVGYPN-DPLIPLMP 277
>gi|414076519|ref|YP_006995837.1| tRNA-pseudouridine synthase I [Anabaena sp. 90]
gi|413969935|gb|AFW94024.1| tRNA-pseudouridine synthase I [Anabaena sp. 90]
Length = 277
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+L+ +V+ + D + R AP GLCL+ VG
Sbjct: 194 IEIQANGFLYGMVRLLIGMVVQVGSGQRTLDDFTDIWQQERREEVKYSAPAHGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|336308017|gb|AEI51119.1| tRNA pseudouridine synthase A [Runella slithyformis DSM 19594]
Length = 249
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 115 ICRVNLLLQRLE---GKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHG 171
I R L +Q++ G LL Y F +K ++ C I HA +
Sbjct: 128 IFRPELDIQKMNEAAGLLLQYTDFECFSKIHTDVKTFL-CTIEHAYWQKT---------- 176
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
R + + ANRFLR MVR +V TL+ +L+ + R+ A AP G
Sbjct: 177 --RNGLTFYIKANRFLRGMVRAIVGTLLEVGQGKKTYADFEQLIMSKNRKNAAAQAPACG 234
Query: 232 LCLVDVGY 239
L LV+VGY
Sbjct: 235 LFLVEVGY 242
>gi|358449023|ref|ZP_09159515.1| tRNA pseudouridine synthase A [Marinobacter manganoxydans MnI7-9]
gi|357226818|gb|EHJ05291.1| tRNA pseudouridine synthase A [Marinobacter manganoxydans MnI7-9]
Length = 302
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R + +++ AN FL MVR + L+ + + + +++ A R A APP GL
Sbjct: 195 RDFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVARDRTAAGVTAPPHGLY 254
Query: 234 LVDVGY 239
LVDVGY
Sbjct: 255 LVDVGY 260
>gi|386347601|ref|YP_006045850.1| tRNA pseudouridine synthase A [Spirochaeta thermophila DSM 6578]
gi|339412568|gb|AEJ62133.1| tRNA pseudouridine synthase A [Spirochaeta thermophila DSM 6578]
Length = 248
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +V N FL +MVR LV T++ AD + + K+++A R A + AP GL L +
Sbjct: 185 LVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMWKILEARDRSAASDSAPAWGLFLHE 244
Query: 237 VGY 239
V Y
Sbjct: 245 VQY 247
>gi|289422511|ref|ZP_06424354.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L]
gi|289157083|gb|EFD05705.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L]
Length = 243
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +EL N FL MVR++ TLV + G D+++ ++++ R APP+GL L
Sbjct: 181 LIVLELTGNGFLYNMVRIIAGTLV-DMGRGHIGDSMVDILESKDRGRAGHTAPPQGLFLK 239
Query: 236 DVGY 239
+V Y
Sbjct: 240 EVEY 243
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGE-NREQSI 67
KD D +N A P IRV V F F +WR Y Y F L+DG + E+
Sbjct: 110 KDADELDYPSILNRALPDDIRVTGWCYVDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMR 169
Query: 68 DSEVEVENFHTSNNVGK 84
D+ +E H N K
Sbjct: 170 DAARRLEGEHDFRNFCK 186
>gi|379009701|ref|YP_005267514.1| tRNA pseudouridine synthase A [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
gi|375158225|gb|AFA41291.1| tRNA pseudouridine synthase A [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 270
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + +++ AN F+ MVR +V TL++ E + +L+ R+ P A P GL L
Sbjct: 180 KYIYIDICANSFVHHMVRNIVGTLIQIGKGEKSEFWISELLILKDRKLAGPTASPNGLYL 239
Query: 235 VDVGYTNF 242
+V Y F
Sbjct: 240 AEVCYPKF 247
>gi|16329915|ref|NP_440643.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803]
gi|383321658|ref|YP_005382511.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324827|ref|YP_005385680.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490711|ref|YP_005408387.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435978|ref|YP_005650702.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803]
gi|451814074|ref|YP_007450526.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803]
gi|3915173|sp|P73295.1|TRUA_SYNY3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|1652401|dbj|BAA17323.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803]
gi|339273010|dbj|BAK49497.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803]
gi|359270977|dbj|BAL28496.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274147|dbj|BAL31665.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277317|dbj|BAL34834.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451780043|gb|AGF51012.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803]
Length = 275
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGL 232
++ +E+ AN FL MVR+LV L A G+ + +L D R AP +GL
Sbjct: 191 MVYLEIQANGFLYGMVRLLVGML---AEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGL 247
Query: 233 CLVDVGYTNFDPQNSL 248
CL+ VGY NF +SL
Sbjct: 248 CLLRVGYENFPLPDSL 263
>gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|385777865|ref|YP_005687030.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|419723270|ref|ZP_14250403.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
gi|419727085|ref|ZP_14254091.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|166991160|sp|A3DJK8.1|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|380769490|gb|EIC03404.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|380780735|gb|EIC10400.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
Length = 244
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K++ E+ + FL MVR++V TL+ D + +++++ R+ AP EGL L
Sbjct: 180 KIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLYL 239
Query: 235 VDVGY 239
V+V Y
Sbjct: 240 VEVYY 244
>gi|397905071|ref|ZP_10505943.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
gi|397161866|emb|CCJ33277.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
Length = 244
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL MVR++ TL+ D + ++D+ R+ P AP +GLCL V Y
Sbjct: 188 ANGFLYNMVRIIAGTLIEVGKGRIKPDDIPFIIDSRDRKKAGPTAPAQGLCLEKVYY 244
>gi|420261519|ref|ZP_14764163.1| tRNA pseudouridine synthase A [Enterococcus sp. C1]
gi|394771453|gb|EJF51214.1| tRNA pseudouridine synthase A [Enterococcus sp. C1]
Length = 248
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VND G+ + + FL KM+R++V TL++ D++ ++ R A P
Sbjct: 178 VNDAGD---ELIFTFRGDGFLYKMIRIMVGTLLKIGNGRIAPDSIPAIIAQKDRNAAGPT 234
Query: 227 APPEGLCLVDVGY 239
A PEGL LV V Y
Sbjct: 235 AHPEGLYLVHVAY 247
>gi|237711190|ref|ZP_04541671.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA]
gi|345515161|ref|ZP_08794667.1| tRNA pseudouridine synthase A [Bacteroides dorei 5_1_36/D4]
gi|423228186|ref|ZP_17214592.1| tRNA pseudouridine synthase A [Bacteroides dorei CL02T00C15]
gi|423239300|ref|ZP_17220416.1| tRNA pseudouridine synthase A [Bacteroides dorei CL03T12C01]
gi|423243449|ref|ZP_17224525.1| tRNA pseudouridine synthase A [Bacteroides dorei CL02T12C06]
gi|229434411|gb|EEO44488.1| tRNA pseudouridine synthase A [Bacteroides dorei 5_1_36/D4]
gi|229455034|gb|EEO60755.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA]
gi|392636969|gb|EIY30847.1| tRNA pseudouridine synthase A [Bacteroides dorei CL02T00C15]
gi|392645202|gb|EIY38934.1| tRNA pseudouridine synthase A [Bacteroides dorei CL02T12C06]
gi|392647087|gb|EIY40793.1| tRNA pseudouridine synthase A [Bacteroides dorei CL03T12C01]
Length = 267
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
+ E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 179 YAEWTRVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGS 238
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 239 SVPGHALFLVDVGY 252
>gi|299144417|ref|ZP_07037497.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518902|gb|EFI42641.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 243
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 75/221 (33%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
IN P I V+ S V FH +SAK + Y Y+
Sbjct: 77 VINFHLPDDISVVGASYVDDDFHARYSAKGKYYRYMIYR--------------------- 115
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
GK N Y N + P + ++ L L G+ YKTF
Sbjct: 116 ----GKYRNPLYRN------------RAMHFPYELNLKKMQSTLNYLIGEN-DYKTFMGR 158
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
HA + I + E + ++ FL+ MVR++V T
Sbjct: 159 ----------------HAIVKDTIRRIDKIEVVEDGDFIYIDFYGKSFLKNMVRIIVGTA 202
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
V A +E+ + ++ R+A P AP GL L+ + Y
Sbjct: 203 VEIARGRFEEEYMKYALNKKHRKAAGPTAPSYGLYLMKIYY 243
>gi|429729206|ref|ZP_19263886.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius VPI
4330]
gi|429145382|gb|EKX88471.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius VPI
4330]
Length = 243
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +EL N FL MVR++ TLV + G D+++ ++++ R APP+GL L
Sbjct: 181 LIVLELTGNGFLYNMVRIIAGTLV-DMGRGYIGDSMVDILESKERGRAGHTAPPQGLFLK 239
Query: 236 DVGY 239
+V Y
Sbjct: 240 EVEY 243
>gi|255264700|ref|ZP_05344042.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62]
gi|255107035|gb|EET49709.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62]
Length = 257
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
A FL VR V TL R A D D + ++A R P +PP+GL L VGY N
Sbjct: 193 ARSFLHNQVRSFVGTLERVGAGSWDPDRVRVALEACERSTCGPVSPPQGLYLAGVGYPN- 251
Query: 243 DP 244
DP
Sbjct: 252 DP 253
>gi|212694471|ref|ZP_03302599.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855]
gi|265750782|ref|ZP_06086845.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA]
gi|212662972|gb|EEB23546.1| tRNA pseudouridine synthase A [Bacteroides dorei DSM 17855]
gi|263237678|gb|EEZ23128.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA]
Length = 257
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 170 HGEGRKVMCVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
+ E +V E V A+RFLR MVR +V TLV D K+++ R +
Sbjct: 169 YAEWTRVSGTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGS 228
Query: 226 PAPPEGLCLVDVGY 239
P L LVDVGY
Sbjct: 229 SVPGHALFLVDVGY 242
>gi|86606117|ref|YP_474880.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab]
gi|86554659|gb|ABC99617.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab]
Length = 287
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 176 VMCVELVANRFLRKMVRVLVATL--VREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
++ +E+ A+ FL +M+R+LV +L V + L + R T APP+GLC
Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGLC 242
Query: 234 LVDVGYTNFDP 244
LVDVGY DP
Sbjct: 243 LVDVGYAG-DP 252
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYI 54
+ P++ +N P + V++ +QV +H FSA+WRRY Y+
Sbjct: 72 IPPTEWARVLNDCLPEDVVVLASAQVPDFWHARFSARWRRYRYL 115
>gi|440751375|ref|ZP_20930608.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
gi|436480017|gb|ELP36282.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
Length = 250
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++ ANRFLR MVR +V TL+ D K++++ R AP GL L +
Sbjct: 182 LFFQITANRFLRGMVRAIVGTLLAVGHGKIDRTDFQKILESRERSQAKSAAPAHGLYLCN 241
Query: 237 VGY 239
V Y
Sbjct: 242 VVY 244
>gi|428314361|ref|YP_007125338.1| pseudouridylate synthase I [Microcoleus sp. PCC 7113]
gi|428255973|gb|AFZ21932.1| pseudouridylate synthase I [Microcoleus sp. PCC 7113]
Length = 346
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LVR +L R AP +GLCL+ VG
Sbjct: 256 IEIQANGFLYGMVRLLVGMLVRVGKGEIHPKDFTELWVNQRREKVKYAAPAKGLCLLRVG 315
Query: 239 YTN--FDPQ 245
Y N F P+
Sbjct: 316 YPNSPFPPE 324
>gi|402496650|ref|YP_006555910.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649923|emb|CCF78093.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 245
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A FL K VR++V TLV + +L +++ R+A APP GL LV
Sbjct: 183 IYIKISAISFLHKQVRIIVGTLVEFGKNKTNPQEMLNILNQHKRKAAGVTAPPCGLYLVK 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IDY 245
>gi|408421475|ref|YP_006762889.1| tRNA pseudouridine synthase I TruA3 [Desulfobacula toluolica Tol2]
gi|405108688|emb|CCK82185.1| TruA3: tRNA pseudouridine synthase I [Desulfobacula toluolica Tol2]
Length = 271
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++C ++A+ FL KMVR +V LV+ + D + ++++A R+A AP G
Sbjct: 187 EKDSLLCFSIIADGFLYKMVRNIVRALVKVGEGRSKVDDIPRIIEAKSRKAAPGTAPASG 246
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 247 LYLDTVFY 254
>gi|390442986|ref|ZP_10230785.1| tRNA pseudouridine synthase A [Nitritalea halalkaliphila LW7]
gi|389667294|gb|EIM78717.1| tRNA pseudouridine synthase A [Nitritalea halalkaliphila LW7]
Length = 117
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+V+ + ANRFLR MVR +V TLV A +++ + R APP GL L
Sbjct: 44 QVLRFHIRANRFLRGMVRAIVGTLVALGQGKTSLSAFQEIVASGDRSQAGAAAPPHGLYL 103
Query: 235 VDVGY 239
V Y
Sbjct: 104 SSVRY 108
>gi|365157295|ref|ZP_09353569.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
gi|363625441|gb|EHL76480.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
Length = 247
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG +++ +LV N FL MVR++V TL+ + + ++++A R PPEG
Sbjct: 179 EGEEIV-FQLVGNGFLYNMVRIIVGTLLECGTGKRSPEEIPEILEAKDRSKAGKTVPPEG 237
Query: 232 LCLVDVGYTN 241
L L +V Y N
Sbjct: 238 LYLWNVFYDN 247
>gi|325567346|ref|ZP_08144013.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|325158779|gb|EGC70925.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
Length = 248
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VND G+ + + FL KM+R++V TL++ D++ ++ R A P
Sbjct: 178 VNDAGD---ELIFTFRGDGFLYKMIRIMVGTLLKIGNGRIAPDSIPAIIAQKDRNAAGPT 234
Query: 227 APPEGLCLVDVGY 239
A PEGL LV V Y
Sbjct: 235 AHPEGLYLVHVAY 247
>gi|427703094|ref|YP_007046316.1| pseudouridylate synthase I [Cyanobium gracile PCC 6307]
gi|427346262|gb|AFY28975.1| pseudouridylate synthase I [Cyanobium gracile PCC 6307]
Length = 281
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ A+ FL MVR+L+ LV + L + R A APP+GLCL+
Sbjct: 183 LLVTEVQASGFLYGMVRLLMGQLVAVGEGRLAAEGFLHRWRSGARHAVKEAAPPQGLCLL 242
Query: 236 DVGY 239
VGY
Sbjct: 243 RVGY 246
>gi|77464142|ref|YP_353646.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides 2.4.1]
gi|123591335|sp|Q3J0D9.1|TRUA_RHOS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|77388560|gb|ABA79745.1| tRNA pseudouridine synthase [Rhodobacter sphaeroides 2.4.1]
Length = 255
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P +PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPPQGLYLTGVGY 249
>gi|357055030|ref|ZP_09116108.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
gi|355383730|gb|EHG30807.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
Length = 247
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 117 RVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECF----IYHARATEAILPC-PVNDHG 171
R+N+ ++RL YK +A+ N+ F + T+ + ++
Sbjct: 118 RINMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVRTQVTDTVRTVYKIDVER 177
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
++ + + N FL MVR++ TL+ + + +++A RRA P AP G
Sbjct: 178 NDNDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARG 237
Query: 232 LCLVDVGY 239
L L+++ Y
Sbjct: 238 LTLIEMKY 245
>gi|257866559|ref|ZP_05646212.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257872925|ref|ZP_05652578.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257800517|gb|EEV29545.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257807089|gb|EEV35911.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
Length = 248
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VND G+ + + FL KM+R++V TL++ D++ ++ R A P
Sbjct: 178 VNDAGD---ELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPT 234
Query: 227 APPEGLCLVDVGY 239
A PEGL LV V Y
Sbjct: 235 AHPEGLYLVHVAY 247
>gi|392392120|ref|YP_006428722.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523198|gb|AFL98928.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
Length = 262
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 54/231 (23%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
I A NS P IR+++ + + FH FSAKW+RY Y ID+ +
Sbjct: 80 IPKAFNSLLPRDIRILAAQEAAEDFHARFSAKWKRYDY------------QIDNRPVADV 127
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
F ++ HE P R+ Q L G+ ++K F
Sbjct: 128 FTRLYSL------------------------HE-PVKLDWQRMRQGAQYLVGR-HNFKAF 161
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+ S+ E +Y + E + G+ R + C+ + FL MVR++
Sbjct: 162 SAAGGTSKTF----ERTLYLCQVAE--------NQGDIR-ITCI---GDGFLYNMVRIIA 205
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
TLV + + ++ + R APP+GL L V Y P++
Sbjct: 206 GTLVYVGKKRIQPEGIPDILTSLDRTRGGVTAPPQGLTLSYVHYGEELPED 256
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I+ VN H ++ ++ A F+ MVR +V L D +L+L+D +
Sbjct: 150 IISIDVNAHC---GIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPSTPH 206
Query: 222 ATAPPAPPEGLCLVDVGYTNFD 243
AP APPEGL L+DVGY++ +
Sbjct: 207 G-APTAPPEGLMLMDVGYSDLE 227
>gi|257876163|ref|ZP_05655816.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|257810329|gb|EEV39149.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
Length = 248
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VND G+ + + FL KM+R++V TL++ D++ ++ R A P
Sbjct: 178 VNDAGD---ELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPT 234
Query: 227 APPEGLCLVDVGY 239
A PEGL LV V Y
Sbjct: 235 AHPEGLYLVHVAY 247
>gi|407957807|dbj|BAM51047.1| tRNA pseudouridine synthase A [Bacillus subtilis BEST7613]
Length = 235
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGL 232
++ +E+ AN FL MVR+LV L A G+ + +L D R AP +GL
Sbjct: 151 MVYLEIQANGFLYGMVRLLVGML---AEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGL 207
Query: 233 CLVDVGYTNFDPQNSL 248
CL+ VGY NF +SL
Sbjct: 208 CLLRVGYENFPLPDSL 223
>gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 249
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + N FL++MVR+L TL+ + + +++A R+A APPEGL L
Sbjct: 183 LHISFTGNGFLQQMVRILTGTLIEVGQGRRKPEDIRSILEALDRQAAGFTAPPEGLFLEK 242
Query: 237 VGY 239
V Y
Sbjct: 243 VEY 245
>gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
Length = 281
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 132 YKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMV 191
+K+F KA + PT ++ E+I + + GE K++ +++V N FL MV
Sbjct: 171 FKSFC---KALSAVDKPTHRYV------ESIQVAEIQEAGE--KLIAIDIVGNAFLHTMV 219
Query: 192 RVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
R +V TLV + +++ A R+ P AP +GL V Y
Sbjct: 220 RTMVGTLVEVGRGHRATNWTREVLLACDRKKAGPTAPAKGLVFTGVLY 267
>gi|352518424|ref|YP_004887741.1| tRNA pseudouridine synthase TruA [Tetragenococcus halophilus NBRC
12172]
gi|348602531|dbj|BAK95577.1| tRNA pseudouridine synthase TruA [Tetragenococcus halophilus NBRC
12172]
Length = 247
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 178 CVELV----ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
C EL+ + FL MVR++V TL++ EDA+ +++ A R P A PEGL
Sbjct: 181 CDELLFTFRGDGFLYNMVRIMVGTLLKIGNGRISEDAIPQIIAACDRSLAGPTAHPEGLY 240
Query: 234 LVDVGY 239
L +V Y
Sbjct: 241 LKEVKY 246
>gi|434400515|ref|YP_007134519.1| tRNA pseudouridine synthase A [Stanieria cyanosphaera PCC 7437]
gi|428271612|gb|AFZ37553.1| tRNA pseudouridine synthase A [Stanieria cyanosphaera PCC 7437]
Length = 280
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ AN FL MVR+LV L+ + +L R AP +GLCL+
Sbjct: 197 LNLEIQANGFLYGMVRLLVGMLIEVGTTERSPEDFTELWQNQRREEVKYSAPAKGLCLLR 256
Query: 237 VGYTNF 242
VGY F
Sbjct: 257 VGYPEF 262
>gi|303257106|ref|ZP_07343120.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|302860597|gb|EFL83674.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47]
Length = 259
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + + + AN FL MVR +V LV D + ++++A R+A AP P GL L
Sbjct: 179 RFIKIRVKANAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238
Query: 235 VDVGYTNFD--PQNSLIP 250
VGY PQ+ P
Sbjct: 239 TGVGYPEIFGLPQHGASP 256
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 78/226 (34%), Gaps = 71/226 (31%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
I INS PG I S ++V FHP A R Y YI P S+D+++
Sbjct: 76 IPRVINSKLPGDIWAWSRAEVDSDFHPRRYAINRTYRYITP---------SMDADIS--K 124
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+ ++ + S+ + N D G TI R+ + RL G LL
Sbjct: 125 LRAACSILEGSH----DFANFCFRDTG---------RSTIRRIEKIDVRLAGNLLR---- 167
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+++ AN FL KM+R +V
Sbjct: 168 -------------------------------------------IDITANSFLWKMIRKIV 184
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
L+ + D D L ++D PA P GL L +V Y +
Sbjct: 185 TVLLLVGSGARDLDWLENMLDPASYEEGIKPAKPYGLILTNVNYGD 230
>gi|254454857|ref|ZP_05068294.1| tRNA pseudouridine synthase A [Octadecabacter arcticus 238]
gi|198269263|gb|EDY93533.1| tRNA pseudouridine synthase A [Octadecabacter arcticus 238]
Length = 256
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 77/217 (35%), Gaps = 53/217 (24%)
Query: 25 PGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGK 84
P I +++ +QVS +H FSA RRYL+ NR + EV VG+
Sbjct: 85 PAPISIVACAQVSDDWHARFSALERRYLFRL-----VNRRAPLVLEVG-----KVWQVGQ 134
Query: 85 QSNGCYENIENLLINDEGGFGSHEKPRNF--TICRVNLLLQRLEGKLLSYKTFARDTKAS 142
+ +G L+ H F T+C+ + ++ L+G L + R A
Sbjct: 135 KLDGA------LMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDG--LKVQQVTRVDGAQ 186
Query: 143 RNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREA 202
F +H RA FL VR V TL R
Sbjct: 187 E--------FQFHVRA-------------------------RSFLHNQVRSFVGTLERVG 213
Query: 203 AAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A D + ++A R A P PP GL L V Y
Sbjct: 214 AGAWTPDDVTAALNARDRTACGPVCPPHGLYLAGVSY 250
>gi|226708659|sp|B8CPW5.1|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3]
Length = 261
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V TL+ ++ + L+ R A A P GL LVD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PEHFQLP 250
>gi|297582482|ref|YP_003698262.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10]
gi|297140939|gb|ADH97696.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10]
Length = 261
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V + FL +MVR+L+ TL++ + D + +++ R+A P AP GL L DV
Sbjct: 185 VVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGLYLEDVF 244
Query: 239 YTN 241
YT
Sbjct: 245 YTK 247
>gi|384109042|ref|ZP_10009927.1| pseudouridylate synthase I [Treponema sp. JC4]
gi|383869384|gb|EID84998.1| pseudouridylate synthase I [Treponema sp. JC4]
Length = 263
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +++ E+ AN FL KMVR L TLV D++ K++ A R + APP GL
Sbjct: 190 GGELLVFEIEANAFLWKMVRTLTGTLVNLDRDKKPLDSMEKILAAKNRVSAGVTAPPTGL 249
Query: 233 CLVDVGY 239
L ++ +
Sbjct: 250 FLYEIKF 256
>gi|261749109|ref|YP_003256794.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497201|gb|ACX83651.1| putative tRNA pseudouridine synthase A [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 247
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 115 ICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR 174
I R+NL Q L K + +F + K +N C IYHA D +
Sbjct: 133 IQRMNLASQILM-KYKDFSSFCKKRKDKKN----NICDIYHA------------DWSRNK 175
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA----TCRRATAPPAPPE 230
C + ANRFLR MVR ++ TL+ + +++++ TC ++P P
Sbjct: 176 IHFCFTIEANRFLRNMVRSIIGTLIDVGRGKISINQFIEIIELKNPNTC---SSPSVPAC 232
Query: 231 GLCLVDVGY 239
GL L + Y
Sbjct: 233 GLFLTKILY 241
>gi|403238438|ref|ZP_10917024.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 256
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLV 235
+ V N FL MVR+LV TL+ E +G E +++ ++ R AP +GLCL
Sbjct: 183 LIFSFVGNGFLYNMVRILVGTLL-EVGSGQREARMIENILSGKDRSLAGKTAPGQGLCLW 241
Query: 236 DVGYTNFDPQN 246
V Y + +N
Sbjct: 242 QVFYEEWKDKN 252
>gi|46445962|ref|YP_007327.1| tRNA pseudouridylate synthase I [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316632|sp|Q6MEE7.1|TRUA1_PARUW RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|46399603|emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia
amoebophila UWE25]
Length = 256
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E + FL KMVR +V TL+ A+ + + ++ A RR + APPEGL L+ V
Sbjct: 188 LEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEGLFLIQVF 247
Query: 239 YTN 241
Y N
Sbjct: 248 YEN 250
>gi|345018501|ref|YP_004820854.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033844|gb|AEM79570.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 244
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TL +E+ + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDRTKAGITAPPQGLYLIKIM 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
>gi|332141777|ref|YP_004427515.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551799|gb|AEA98517.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
Length = 264
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+GR V+ +++ AN FL MVR + LV A D + + L+ R +A A P G
Sbjct: 178 QGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNG 236
Query: 232 LCLVDVGY 239
L LVDV Y
Sbjct: 237 LYLVDVTY 244
>gi|91792843|ref|YP_562494.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217]
gi|123061034|sp|Q12P55.1|TRUA_SHEDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91714845|gb|ABE54771.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217]
Length = 261
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VN +G +M V++ AN FL MVR +V +L+ + + KL+ RR A
Sbjct: 172 VNVTRQGMYIM-VDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAAT 230
Query: 227 APPEGLCLVDVGYTNFDPQNSLIP 250
A P GL LVDV Y P+ IP
Sbjct: 231 AKPNGLYLVDVTY----PEEFAIP 250
>gi|152980861|ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille]
gi|189029996|sp|A6T009.1|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|151280938|gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille]
Length = 271
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ L AN FL MVR +V +L+ D L +L+D R+ AP P+GL L
Sbjct: 191 LIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAAPTFMPDGLYLA 250
Query: 236 DVGYTNFDPQNSL 248
+ Y DP+ L
Sbjct: 251 KIDY---DPKWQL 260
>gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
Length = 247
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR +V TL++ + + +++++ R+ P APP+GL +
Sbjct: 182 ILLDIKANAFLHHMVRNIVGTLLKVGKGEKPIEWVREVLNSKQRKQAGPTAPPQGLYFIR 241
Query: 237 VGYTN 241
Y N
Sbjct: 242 AFYKN 246
>gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429]
gi|166229846|sp|A6LLJ7.1|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429]
Length = 244
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
++++ + + FLR MVR +V +LVR + + K+++A R+ A APP GL
Sbjct: 179 KELILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAGTAPPHGLY 238
Query: 234 LVDV 237
L V
Sbjct: 239 LYKV 242
>gi|410862153|ref|YP_006977387.1| tRNA pseudouridine synthase A [Alteromonas macleodii AltDE1]
gi|410819415|gb|AFV86032.1| tRNA pseudouridine synthase A [Alteromonas macleodii AltDE1]
Length = 263
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ + +GR V+ +++ AN FL MVR + LV A D + + L+ R +A
Sbjct: 173 VSVYRQGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAAT 231
Query: 227 APPEGLCLVDVGY 239
A P GL LVDV Y
Sbjct: 232 AKPNGLYLVDVTY 244
>gi|336394592|ref|ZP_08575991.1| tRNA pseudouridine synthase A [Lactobacillus farciminis KCTC 3681]
Length = 248
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 68 DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEG 127
DS + ENFH V K+ Y + F + P ++ ++ L+ LEG
Sbjct: 92 DSAIVDENFHARFGV-KRKTYQYRVDCGYYTDPFKRFYTGHYPYKISVDKIQTALKDLEG 150
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ + +FA AS + IY A C N + + + E N FL
Sbjct: 151 EH-DFTSFA----ASGGVIENKVRTIYSA-------TCVYNKNND---ELVFEFTGNGFL 195
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR+LVATL+ D L+L + R+ AP GL L +V Y
Sbjct: 196 YNMVRILVATLLEIGNGRRDVHDFLRLFEVKDRQEARGTAPASGLYLKEVFY 247
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
++ +++V N FL MVR +V L D D LL++++ PAPP GL L
Sbjct: 164 EITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIEPAPPYGLTL 223
Query: 235 VDVGY 239
+ V Y
Sbjct: 224 MGVNY 228
>gi|126667385|ref|ZP_01738357.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17]
gi|126628141|gb|EAZ98766.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17]
Length = 303
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + L+ D + +++ RR APP+GL LVD
Sbjct: 198 LVIDVQANAFLHHMVRNIAGALMAVGCQEQAPDWIGQILATKDRRQAGVTAPPDGLYLVD 257
Query: 237 VGY 239
VGY
Sbjct: 258 VGY 260
>gi|427707964|ref|YP_007050341.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7107]
gi|427360469|gb|AFY43191.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7107]
Length = 275
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL MVR+LV LV+ A ++ R AP +GLCL+
Sbjct: 191 LLNIEIQADGFLYGMVRLLVGMLVQVGAKQRTLANFTEIWQQERREEVKYAAPAQGLCLL 250
Query: 236 DVGYTNF 242
VGY +F
Sbjct: 251 RVGYPDF 257
>gi|406597278|ref|YP_006748408.1| tRNA pseudouridine synthase A [Alteromonas macleodii ATCC 27126]
gi|406374599|gb|AFS37854.1| tRNA pseudouridine synthase A [Alteromonas macleodii ATCC 27126]
Length = 263
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ + +GR V+ +++ AN FL MVR + LV A D + + L+ R +A
Sbjct: 173 VSVYRQGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAAT 231
Query: 227 APPEGLCLVDVGY 239
A P GL LVDV Y
Sbjct: 232 AKPNGLYLVDVTY 244
>gi|157144741|ref|YP_001452060.1| tRNA pseudouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|166228694|sp|A8ADR1.1|TRUA_CITK8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157081946|gb|ABV11624.1| hypothetical protein CKO_00468 [Citrobacter koseri ATCC BAA-895]
Length = 270
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A RR
Sbjct: 178 VMHINVTRHG---AYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRR 234
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
+A A EGL LV V Y FD P+ L P
Sbjct: 235 LSAATAKAEGLYLVAVDYPERFDLPKTPLGP 265
>gi|407688221|ref|YP_006803394.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407291601|gb|AFT95913.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 263
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ + +GR V+ +++ AN FL MVR + LV A D + + L+ R +A
Sbjct: 173 VSVYRQGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAAT 231
Query: 227 APPEGLCLVDVGY 239
A P GL LVDV Y
Sbjct: 232 AKPNGLYLVDVTY 244
>gi|407700538|ref|YP_006825325.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249685|gb|AFT78870.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
Length = 263
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+GR V+ +++ AN FL MVR + LV A D + + L+ R +A A P G
Sbjct: 178 QGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNG 236
Query: 232 LCLVDVGY 239
L LVDV Y
Sbjct: 237 LYLVDVTY 244
>gi|295694868|ref|YP_003588106.1| tRNA pseudouridine synthase A [Kyrpidia tusciae DSM 2912]
gi|295410470|gb|ADG04962.1| tRNA pseudouridine synthase A [Kyrpidia tusciae DSM 2912]
Length = 277
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL +MVR+LV TLV +++ ++ A RRA AP +GL L DV Y
Sbjct: 185 VFGNGFLYQMVRILVGTLVEVGIGKRSVESISGILAARDRRAAGVTAPAKGLTLWDVYYE 244
Query: 241 NFD 243
D
Sbjct: 245 TGD 247
>gi|17231681|ref|NP_488229.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7120]
gi|42559852|sp|Q8YPK5.1|TRUA_NOSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|17133324|dbj|BAB75888.1| tRNA-pseudouridine synthase I [Nostoc sp. PCC 7120]
Length = 282
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV+ + +L R AP +GLCL+ VG
Sbjct: 194 IEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|410668857|ref|YP_006921228.1| tRNA pseudouridine synthase A [Thermacetogenium phaeum DSM 12270]
gi|409106604|gb|AFV12729.1| tRNA pseudouridine synthase A [Thermacetogenium phaeum DSM 12270]
Length = 262
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+C + A+ FL KMVR++V TL+ + +++D R P PP+GL LV
Sbjct: 184 ICFSVTADGFLYKMVRLMVGTLLEVGRGKMRPQQVKEILDRGERGEGGPALPPQGLYLVK 243
Query: 237 VGY 239
V Y
Sbjct: 244 VYY 246
>gi|400406402|ref|YP_006589150.1| pseudouridylate synthase I [secondary endosymbiont of Heteropsylla
cubana]
gi|400364655|gb|AFP85722.1| pseudouridylate synthase I [secondary endosymbiont of Heteropsylla
cubana]
Length = 261
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+GR V+ +++ AN FL MVR +V +L+ + +E+ + +L+ R+ P A G
Sbjct: 177 QGRYVI-IDIKANAFLHHMVRNIVGSLIEVGSGYKEENWISELLKCCDRKKAGPTASAAG 235
Query: 232 LCLVDVGY 239
L L+ V Y
Sbjct: 236 LYLIGVDY 243
>gi|441498902|ref|ZP_20981093.1| tRNA pseudouridine synthase A [Fulvivirga imtechensis AK7]
gi|441437357|gb|ELR70710.1| tRNA pseudouridine synthase A [Fulvivirga imtechensis AK7]
Length = 248
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 79/229 (34%), Gaps = 56/229 (24%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
VKP + +NS P I + SV VS H FSA R Y Y
Sbjct: 69 VKPEQLRRRLNSYLPADIAIPSVKWVSEDAHARFSAVSRSYEY----------------- 111
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
+ + N EN S+ P++ I +N + L G
Sbjct: 112 ----------RITTEKNPFLENF------------SYFYPKSLDIQTMNEVATLLLG--- 146
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
D +A + F+ A + + + + + ++ ANRFLR M
Sbjct: 147 -----VHDFEAFSKVRTDVNNFVCEITAAQWV---------KEKDLYIFKITANRFLRGM 192
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VR +V TL+ +++ + RR AP GL L +V Y
Sbjct: 193 VRAVVGTLLNVGKGKMPPGQFKEIIASKDRREAGSAAPACGLFLTEVRY 241
>gi|75906940|ref|YP_321236.1| tRNA pseudouridine synthase A [Anabaena variabilis ATCC 29413]
gi|75700665|gb|ABA20341.1| tRNA pseudouridine synthase [Anabaena variabilis ATCC 29413]
Length = 282
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV+ + +L R AP +GLCL+ VG
Sbjct: 194 IEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|327404294|ref|YP_004345132.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823]
gi|327319802|gb|AEA44294.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823]
Length = 256
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ A+RFLR MVR +V TL+ E+ + K++ R P +GL LV++ Y
Sbjct: 185 EIKADRFLRNMVRAVVGTLLEVGYGNLGENDITKIVALKDRGEAKLSVPAKGLFLVNIEY 244
Query: 240 TNFDPQNSLI 249
P+N LI
Sbjct: 245 ----PENFLI 250
>gi|410029364|ref|ZP_11279200.1| tRNA pseudouridine synthase A [Marinilabilia sp. AK2]
Length = 250
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + ANRFLR MVR +V TL+ D +++++ R A AP +GL L
Sbjct: 181 LLLFHITANRFLRGMVRAIVGTLMEVGHEKISLDDFRQILESKNRNAAKASAPAKGLYLC 240
Query: 236 DVGY 239
+ Y
Sbjct: 241 RITY 244
>gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
Length = 253
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG +++ + + N FL MVR++ TL++ + + ++++A R APP+G
Sbjct: 178 EGSEII-IRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQG 236
Query: 232 LCLVDVGYTNFD 243
L LV + Y + D
Sbjct: 237 LTLVGIEYVDND 248
>gi|354565819|ref|ZP_08984993.1| tRNA pseudouridine synthase A [Fischerella sp. JSC-11]
gi|353548692|gb|EHC18137.1| tRNA pseudouridine synthase A [Fischerella sp. JSC-11]
Length = 287
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ AN FL M+R+LV LV+ + L R AP GLCL+
Sbjct: 192 LHIEIQANGFLYGMMRLLVGMLVQVGTGERSLASFTDLWKNERREEVKYAAPAHGLCLLR 251
Query: 237 VGYTNF 242
VGY +F
Sbjct: 252 VGYPDF 257
>gi|229107828|ref|ZP_04237464.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15]
gi|228675677|gb|EEL30885.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15]
Length = 252
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|357057062|ref|ZP_09118069.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
gi|355379031|gb|EHG26205.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
Length = 248
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+ N FL++MVR+L TL+ + + ++++A R APPEGL L +V
Sbjct: 184 ISFTGNGFLQQMVRILSGTLIEVGVGKRKPEEMARVLEARERSVAGFTAPPEGLFLENVE 243
Query: 239 YTNF 242
Y +
Sbjct: 244 YGDL 247
>gi|407684291|ref|YP_006799465.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'English
Channel 673']
gi|407245902|gb|AFT75088.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'English
Channel 673']
Length = 263
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+GR V+ +++ AN FL MVR + LV A D + + L+ R +A A P G
Sbjct: 178 QGRYVI-IDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNG 236
Query: 232 LCLVDVGY 239
L LVDV Y
Sbjct: 237 LYLVDVTY 244
>gi|423409809|ref|ZP_17386958.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-3]
gi|401652349|gb|EJS69906.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-3]
Length = 247
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|387814143|ref|YP_005429626.1| pseudouridylate synthase I [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381339156|emb|CCG95203.1| pseudouridylate synthase I [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 302
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +++ AN FL MVR + L+ ED + +++ R+ APP GL L
Sbjct: 196 EFVVIDVQANAFLHHMVRNIAGALMAVGNGQQSEDWIGDILERRDRKLAGVTAPPYGLYL 255
Query: 235 VDVGYTNFDPQNSLIP 250
VDVGY P++ IP
Sbjct: 256 VDVGY----PESFGIP 267
>gi|346226803|ref|ZP_08847945.1| tRNA pseudouridine synthase A [Anaerophaga thermohalophila DSM
12881]
Length = 259
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 165 CPVND---HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
C ++D G + + V + A+RFLR MVR +V TL+ + ++++A R
Sbjct: 168 CKISDAFWEKRGNRYVFV-ISADRFLRNMVRAIVGTLLDVGRGKISVNDFCEIIEAQDRC 226
Query: 222 ATAPPAPPEGLCLVDVGY 239
APP+GL L D+ Y
Sbjct: 227 LAGTSAPPQGLFLTDIKY 244
>gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
Length = 264
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +++ N FLR MVR++ TLV D + ++D+ R AP GL LV
Sbjct: 185 LIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244
Query: 236 DVGYTNFDPQNSLIP 250
+V Y P + +P
Sbjct: 245 EVFYPAETPSTTTVP 259
>gi|157961443|ref|YP_001501477.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345]
gi|189030144|sp|A8H305.1|TRUA_SHEPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157846443|gb|ABV86942.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345]
Length = 261
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ + + +L+ R A A P GL LVD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLLEVGLGNQSVEWIEQLLALKDRNKAAATAKPNGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PESYQLP 250
>gi|283768478|ref|ZP_06341390.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219]
gi|283104870|gb|EFC06242.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219]
Length = 320
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 166 PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
++DH E +E+ N +LR MVR+LV T + + + ++++ R
Sbjct: 177 KISDHLE------LEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATK 230
Query: 226 PAPPEGLCLVDVGY 239
AP +GLCL +V Y
Sbjct: 231 KAPAQGLCLKEVSY 244
>gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40]
gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40]
Length = 289
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 77/224 (34%), Gaps = 53/224 (23%)
Query: 18 DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFH 77
+N+ P IRVIS +V FH FSA R Y Y+ ++ +V + H
Sbjct: 99 QGVNTHLPFSIRVISAKEVGFDFHARFSALSRTYRYVIHVS-------------QVRSAH 145
Query: 78 TSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFAR 137
N V +L KL A
Sbjct: 146 LVNGV--------------------------------------TWVKLPQKLSGLDVPAM 167
Query: 138 DTKASRNIGPP--TECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
AS +G T H +A + V D + + + V++ AN FL MVR +V
Sbjct: 168 QEAASLLLGEHDFTSFRTVHCQAASPVRTMEVADVVQMGEFIVVQVTANAFLHHMVRNIV 227
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L+R + +L++ R A AP GL V+V Y
Sbjct: 228 GVLLRVGRGELKPSRVTELIELRDRSQAAETAPAAGLYFVNVQY 271
>gi|345882706|ref|ZP_08834162.1| tRNA pseudouridine synthase A [Prevotella sp. C561]
gi|345044415|gb|EGW48454.1| tRNA pseudouridine synthase A [Prevotella sp. C561]
Length = 253
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 157 RATEAILPCPVNDH-----GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDAL 211
R TEA PVN+ G+ C + ANRFLR MVR +V TLV D
Sbjct: 167 RLTEARW-FPVNNEFALTTGDNVTNWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLDDF 225
Query: 212 LKLMDATCRRATAPPAPPEGLCLVDVGY 239
K++D R P L L D+ Y
Sbjct: 226 KKIVDEGTRNDAGESMPGNALFLWDIKY 253
>gi|307719509|ref|YP_003875041.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM
6192]
gi|306533234|gb|ADN02768.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM
6192]
Length = 248
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +V N FL +MVR LV T++ AD + + K+++A R A + AP GL L +
Sbjct: 185 LVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMRKILEARDRSAASDSAPAWGLFLHE 244
Query: 237 VGY 239
V Y
Sbjct: 245 VQY 247
>gi|422698818|ref|ZP_16756703.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
gi|315172660|gb|EFU16677.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
Length = 249
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VN+ G+ + + FL KM+R+LV TL++ + A+ ++ A R P
Sbjct: 178 VNEKGDE---LTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPT 234
Query: 227 APPEGLCLVDVGYTN 241
A PEGL L +V Y N
Sbjct: 235 AHPEGLYLAEVKYEN 249
>gi|374289002|ref|YP_005036087.1| putative tRNA pseudouridine synthase [Bacteriovorax marinus SJ]
gi|301167543|emb|CBW27126.1| putative tRNA pseudouridine synthase [Bacteriovorax marinus SJ]
Length = 267
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 8 RKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENRE--Q 65
++D++P ++ +N P IR+ + R F + AK ++YLYIF +N+ ++
Sbjct: 69 QEDLEPHELTKKLNQELPNDIRITKCERTYRHFKVVYFAKRKQYLYIFKINNSDHSTFYH 128
Query: 66 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
SI+ +++E + V G+H+ RNF C
Sbjct: 129 SIEENLDIEKMKEAAKV--------------------FIGTHD-FRNF--CH-------- 157
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
K S N+ E F + + ++ G + +E +
Sbjct: 158 --------------KVSENVDKKREIFECKIIEDQDFIS---ENNCHGSYALVIE--GSG 198
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
FL++MVR+++ +L+ + + + +T + T AP GL L ++ + DP
Sbjct: 199 FLKQMVRIIMGSLINIGLGKTTLSQIQEALVSTEFKKTGFIAPGGGLYLNEIEFIR-DP 256
>gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
Length = 294
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
L+ + L+ F KA G PT F+ E + + GE K++ V+
Sbjct: 176 LMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEE------IEEAGE--KLIAVD 227
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL MVR +V TLV + + +++ A R A AP +GL V+V Y
Sbjct: 228 ITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPAQGLTFVNVRY- 286
Query: 241 NFDPQNSLIP 250
P+ L P
Sbjct: 287 ---PEGILQP 293
>gi|198276843|ref|ZP_03209374.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135]
gi|198270368|gb|EDY94638.1| tRNA pseudouridine synthase A [Bacteroides plebeius DSM 17135]
Length = 252
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA + E V ++ A+RFLR
Sbjct: 146 LFDYTDFTSFSKLHTDV-KTNNCKIMHAHWDQV---------SETEWVFTIQ--ADRFLR 193
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TLV + K+++ R + P L LVD+GY
Sbjct: 194 NMVRAIVGTLVEVGRGKLSVEGFRKVIEEKNRCSAGTSVPGHALFLVDIGY 244
>gi|160941032|ref|ZP_02088370.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC
BAA-613]
gi|158435981|gb|EDP13748.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC
BAA-613]
Length = 247
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + N FL MVR++ TL+ + + +++A RRA P AP GL L+
Sbjct: 182 IITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARGLTLI 241
Query: 236 DVGY 239
++ Y
Sbjct: 242 EMKY 245
>gi|423399415|ref|ZP_17376613.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-1]
gi|401644515|gb|EJS62205.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-1]
Length = 247
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|218781331|ref|YP_002432649.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans
AK-01]
gi|218762715|gb|ACL05181.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans
AK-01]
Length = 245
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FLR MVR +V TLV +A++ ++ + R P APPEGL ++ V Y
Sbjct: 189 ANGFLRYMVRNIVGTLVYIGMGKIPPEAVMDILASGDRGQAGPTAPPEGLFMMCVKY 245
>gi|406663977|ref|ZP_11071978.1| tRNA pseudouridine synthase A [Cecembia lonarensis LW9]
gi|405551714|gb|EKB47385.1| tRNA pseudouridine synthase A [Cecembia lonarensis LW9]
Length = 250
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + ANRFLR MVR +V TL+ + + +++++ R + AP +GL L
Sbjct: 181 LLLFHITANRFLRGMVRAIVGTLIEVGLEKINAEDFKQILESKNRNSAKASAPAKGLYLC 240
Query: 236 DVGY 239
+ Y
Sbjct: 241 RITY 244
>gi|421512597|ref|ZP_15959400.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
gi|401674285|gb|EJS80640.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
Length = 253
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 198 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 253
>gi|260914049|ref|ZP_05920522.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325]
gi|260631682|gb|EEX49860.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325]
Length = 264
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ R AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEIGAGHQPVEWMSWLLAQKDRTLAAPTAKPEGLYL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V+V Y F P+N L P
Sbjct: 239 VNVIYPEQFQLPKNPLGP 256
>gi|404403962|ref|ZP_10995546.1| tRNA pseudouridine synthase A [Alistipes sp. JC136]
Length = 259
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+G MC + A+RFLR MVR +V TLV + ++++ ++ AP +G
Sbjct: 176 DGHGTMCFTIRADRFLRNMVRSIVGTLVDVGRGRYTPEEFRAIVESRDLSRSSAGAPAQG 235
Query: 232 LCLVDVGYTN--FDPQ 245
L L DV Y F+PQ
Sbjct: 236 LFLSDVRYPPEIFEPQ 251
>gi|42522098|ref|NP_967478.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100]
gi|51316639|sp|Q6MQH6.1|TRUA_BDEBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|39574629|emb|CAE78471.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100]
Length = 262
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 172 EGRK--VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
E RK VM + + FL++MVR +V T + G D + +++ A R PPAP
Sbjct: 182 EWRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPA 241
Query: 230 EGLCLVDVGY 239
+GL L+ V Y
Sbjct: 242 QGLYLMKVYY 251
>gi|410622471|ref|ZP_11333305.1| tRNA pseudouridine38-40 synthase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410157989|dbj|GAC28679.1| tRNA pseudouridine38-40 synthase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 259
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 177 MCVELVANRFLRKMVRVLVATLVR----EAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
+ VE+ AN FL MVR +V +L+R E G +D L DA R+ A P GL
Sbjct: 181 IIVEVAANAFLHHMVRNIVGSLIRVGTNEETVGWMKDTL----DAKDRKVAGTTARPNGL 236
Query: 233 CLVDVGY-TNFD-PQNSLIP 250
LVDV Y FD P + L P
Sbjct: 237 YLVDVIYPQEFDMPISQLGP 256
>gi|331086292|ref|ZP_08335372.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406058|gb|EGG85581.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 249
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG ++ + + N FL MVR++V TLVR + + ++++A R+A AP G
Sbjct: 180 EGEEI-TIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHG 238
Query: 232 LCLVDVGY 239
L LV++ Y
Sbjct: 239 LMLVEIRY 246
>gi|312904650|ref|ZP_07763805.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
gi|310632002|gb|EFQ15285.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
Length = 249
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLVGPTAHPEGLYLAEVKYEN 249
>gi|337286733|ref|YP_004626206.1| tRNA pseudouridine synthase A [Thermodesulfatator indicus DSM
15286]
gi|335359561|gb|AEH45242.1| tRNA pseudouridine synthase A [Thermodesulfatator indicus DSM
15286]
Length = 266
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ FLR MVR +V LV + L +++A R PPAPP+GL L
Sbjct: 184 MLRFEISGRGFLRYMVRNIVGALVEVGLGKLTYEELASILEAKDRSLAPPPAPPQGLFLK 243
Query: 236 DVGYTN 241
+V Y +
Sbjct: 244 EVIYKD 249
>gi|349700013|ref|ZP_08901642.1| tRNA pseudouridine synthase A [Gluconacetobacter europaeus LMG
18494]
Length = 273
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG V+ +E A FL VR + TL + + + + A RRA P APPEG
Sbjct: 200 EGEHVV-IEAEARSFLHHQVRNMAGTLKLVGEGRWAPERVEQALAARDRRAGGPTAPPEG 258
Query: 232 LCLVDVGYT 240
LCL VGY
Sbjct: 259 LCLTGVGYA 267
>gi|325662523|ref|ZP_08151126.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471219|gb|EGC74444.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 249
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG ++ + + N FL MVR++V TLVR + + ++++A R+A AP G
Sbjct: 180 EGEEI-TIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHG 238
Query: 232 LCLVDVGY 239
L LV++ Y
Sbjct: 239 LMLVEIRY 246
>gi|445498542|ref|ZP_21465397.1| tRNA pseudouridine synthase A [Janthinobacterium sp. HH01]
gi|444788537|gb|ELX10085.1| tRNA pseudouridine synthase A [Janthinobacterium sp. HH01]
Length = 267
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+ HGE ++ + AN FL MVR LV +LV + L +L++ R A AP
Sbjct: 181 IKRHGE---LVVFTITANAFLHHMVRNLVGSLVYIGTGREQPEWLGQLLETRDRHAAAPT 237
Query: 227 APPEGLCLVDVGYTNFDPQNSL 248
P+GL L + Y DP+ L
Sbjct: 238 FMPDGLYLAKIDY---DPKWEL 256
>gi|410662712|ref|YP_006915083.1| tRNA pseudouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
gi|409025069|gb|AFU97353.1| tRNA pseudouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
Length = 294
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ AN FL MVR + L+R A+ + +++ + R A APP GL LV
Sbjct: 205 LLVMEITANAFLHHMVRNIAGVLMRVGKGWAEPGWVAEVLASRDRTRAAETAPPYGLYLV 264
Query: 236 DVGYTN------FDPQNSLIP 250
V Y + F P S P
Sbjct: 265 HVAYPDTFSLPVFAPGPSFFP 285
>gi|257088682|ref|ZP_05583043.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|397698764|ref|YP_006536552.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
gi|422687608|ref|ZP_16745784.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|422733263|ref|ZP_16789584.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|256997494|gb|EEU84014.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|315160761|gb|EFU04778.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|315579360|gb|EFU91551.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|397335403|gb|AFO43075.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
Length = 249
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|170718977|ref|YP_001784140.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336]
gi|189030135|sp|B0USP1.1|TRUA_HAES2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|168827106|gb|ACA32477.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336]
Length = 269
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + + L+ R AP A P+GL LV+
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVE 240
Query: 237 VGYTN-FD-PQNSLIP 250
V Y N F+ P+N L P
Sbjct: 241 VKYPNHFNLPKNPLGP 256
>gi|221640010|ref|YP_002526272.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131]
gi|254764862|sp|B9KKX4.1|TRUA_RHOSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221160791|gb|ACM01771.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131]
Length = 255
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|423602329|ref|ZP_17578329.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD078]
gi|423665345|ref|ZP_17640484.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM022]
gi|401225868|gb|EJR32412.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD078]
gi|401290252|gb|EJR95947.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM022]
Length = 247
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ + AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFSGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|332559018|ref|ZP_08413340.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N]
gi|332276730|gb|EGJ22045.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N]
Length = 255
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|256956829|ref|ZP_05561000.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|257078499|ref|ZP_05572860.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|294781084|ref|ZP_06746435.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|300861778|ref|ZP_07107858.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|307269121|ref|ZP_07550482.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|307286980|ref|ZP_07567055.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|312901088|ref|ZP_07760376.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|422702632|ref|ZP_16760461.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|422709536|ref|ZP_16766917.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|422721643|ref|ZP_16778230.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|422738792|ref|ZP_16793979.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|428765863|ref|YP_007151974.1| tRNA pseudouridine synthase A [Enterococcus faecalis str.
Symbioflor 1]
gi|256947325|gb|EEU63957.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|256986529|gb|EEU73831.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|294451887|gb|EFG20338.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|295112531|emb|CBL31168.1| pseudouridylate synthase I [Enterococcus sp. 7L76]
gi|300848303|gb|EFK76060.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|306501926|gb|EFM71215.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|306514601|gb|EFM83155.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|311291760|gb|EFQ70316.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|315031173|gb|EFT43105.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|315035981|gb|EFT47913.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|315145370|gb|EFT89386.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|315165868|gb|EFU09885.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|427184036|emb|CCO71260.1| tRNA pseudouridine synthase A [Enterococcus faecalis str.
Symbioflor 1]
Length = 249
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|113461401|ref|YP_719470.1| tRNA pseudouridine synthase A [Haemophilus somnus 129PT]
gi|122945393|sp|Q0I4X5.1|TRUA_HAES1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|112823444|gb|ABI25533.1| pseudouridylate synthetase [Haemophilus somnus 129PT]
Length = 269
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + + L+ R AP A P+GL LV+
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVE 240
Query: 237 VGYTN-FD-PQNSLIP 250
V Y N F+ P+N L P
Sbjct: 241 VKYPNHFNLPKNPLGP 256
>gi|317471507|ref|ZP_07930858.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA]
gi|316901002|gb|EFV22965.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA]
Length = 249
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
+H E R + + FL MVR+L TL A D +++ + + R+ AP
Sbjct: 183 EHSEIR----LSFTGDGFLYNMVRILTGTLAEIGAGSRDPESIFHVFQSKDRKDAGITAP 238
Query: 229 PEGLCLVDVGY 239
P+GL L++V Y
Sbjct: 239 PQGLFLMNVEY 249
>gi|408675160|ref|YP_006874908.1| tRNA pseudouridine synthase A [Emticicia oligotrophica DSM 17448]
gi|387856784|gb|AFK04881.1| tRNA pseudouridine synthase A [Emticicia oligotrophica DSM 17448]
Length = 242
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+RFLR MVR +V T++ + ++ + R PPEGL L++VGY
Sbjct: 186 ADRFLRGMVRAIVGTMIDVGLGKLSIEGFEAIIVSKDRNKAGRAVPPEGLTLMEVGY 242
>gi|347530584|ref|YP_004837347.1| tRNA pseudouridine synthase A [Roseburia hominis A2-183]
gi|345500732|gb|AEN95415.1| tRNA pseudouridine synthase A [Roseburia hominis A2-183]
Length = 260
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 161 AILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCR 220
I C V + ++ + + N FL MVR++ TL++ + + + +++ A R
Sbjct: 173 TIYACSVT---KADDIITIRVTGNGFLYNMVRIIAGTLIQVGGGQIEPEQIEQILAARDR 229
Query: 221 RATAPPAPPEGLCLVDVGY 239
A P AP GL ++ + Y
Sbjct: 230 EAAGPTAPAHGLTMMGIEY 248
>gi|256960635|ref|ZP_05564806.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|293382724|ref|ZP_06628649.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|293388093|ref|ZP_06632621.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613]
gi|312908619|ref|ZP_07767561.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|312909233|ref|ZP_07768090.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|256951131|gb|EEU67763.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|291079884|gb|EFE17248.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|291082544|gb|EFE19507.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613]
gi|310625406|gb|EFQ08689.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|311290475|gb|EFQ69031.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
Length = 249
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|229546930|ref|ZP_04435655.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|229550518|ref|ZP_04439243.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|255971742|ref|ZP_05422328.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|255974742|ref|ZP_05425328.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256618347|ref|ZP_05475193.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|257081530|ref|ZP_05575891.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|257417608|ref|ZP_05594602.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257421532|ref|ZP_05598522.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|307276430|ref|ZP_07557553.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|307278640|ref|ZP_07559710.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|312952641|ref|ZP_07771505.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|384512149|ref|YP_005707242.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|384517322|ref|YP_005704627.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|422691684|ref|ZP_16749713.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|422695411|ref|ZP_16753397.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|422700076|ref|ZP_16757932.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422706350|ref|ZP_16764051.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|422723143|ref|ZP_16779681.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|422726431|ref|ZP_16782878.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|422735098|ref|ZP_16791378.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|424671713|ref|ZP_18108704.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|430362577|ref|ZP_19427121.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1X]
gi|430368678|ref|ZP_19428359.1| tRNA-pseudouridine synthase I [Enterococcus faecalis M7]
gi|229304375|gb|EEN70371.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|229307858|gb|EEN73845.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255962760|gb|EET95236.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|255967614|gb|EET98236.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256597874|gb|EEU17050.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|256989560|gb|EEU76862.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|257159436|gb|EEU89396.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257163356|gb|EEU93316.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|306504700|gb|EFM73900.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|306506910|gb|EFM76057.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|310629429|gb|EFQ12712.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|315026801|gb|EFT38733.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|315147137|gb|EFT91153.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|315153575|gb|EFT97591.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|315156245|gb|EFU00262.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|315158610|gb|EFU02627.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|315168134|gb|EFU12151.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171426|gb|EFU15443.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|323479455|gb|ADX78894.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|327534038|gb|AEA92872.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|402357981|gb|EJU92669.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|429512091|gb|ELA01710.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1X]
gi|429516122|gb|ELA05617.1| tRNA-pseudouridine synthase I [Enterococcus faecalis M7]
Length = 249
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|428219268|ref|YP_007103733.1| tRNA pseudouridine synthase A [Pseudanabaena sp. PCC 7367]
gi|427991050|gb|AFY71305.1| tRNA pseudouridine synthase A [Pseudanabaena sp. PCC 7367]
Length = 282
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL M+R+LV TLV + + R A APP+GLCL+
Sbjct: 194 IYIEVQASGFLYGMMRLLVGTLVDVGRSRLSVAEFTNIWQKRQRSAIKYAAPPQGLCLLQ 253
Query: 237 VGY 239
+GY
Sbjct: 254 IGY 256
>gi|328958698|ref|YP_004376084.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
gi|328675022|gb|AEB31068.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
Length = 279
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR+ V TL++ A D + +L++ R P A P+GL L++V Y
Sbjct: 193 GNGFLYNMVRIFVGTLLQIANGLRPADEIQRLLEVKDRNEAGPTAKPQGLYLMEVYY 249
>gi|422867082|ref|ZP_16913684.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|329577713|gb|EGG59139.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
Length = 249
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|289523335|ref|ZP_06440189.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503027|gb|EFD24191.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 268
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 54/227 (23%)
Query: 13 PSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVE 72
P+ + A+ + P I V V V FH SA WR+Y Y + G+ R + V
Sbjct: 77 PTALRKALEANLPSSIGVYEVVPVDFAFHARRSALWRKYAYF--IWKGDCRLPHLGRYVW 134
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
++ K+ E +D G F CR
Sbjct: 135 WNRRGWDMDLAKKFLTMIEGF-----HDFGAF-----------CR--------------- 163
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
KA R P++ A I+ + + G ++ V + FL MVR
Sbjct: 164 -------KADR----PSD-------ARRTIMEARIEEKGP---LLKVSVTGRSFLTNMVR 202
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
++V T+ A + + +L+D R P AP +GL L +V Y
Sbjct: 203 IIVGTMDEIATGRKSLEEVCRLLDGGSRGEAGPTAPAKGLFLWEVRY 249
>gi|256855196|ref|ZP_05560557.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|307291679|ref|ZP_07571554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|422686450|ref|ZP_16744647.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|256709709|gb|EEU24756.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|306497298|gb|EFM66840.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|315028842|gb|EFT40774.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
Length = 249
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|291288851|ref|YP_003505667.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809]
gi|290886011|gb|ADD69711.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809]
Length = 245
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
KV+C+E+ N FL MVR++ T+V G ++ + + ++ R P A GL L
Sbjct: 181 KVICIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYL 240
Query: 235 VDVGY 239
V Y
Sbjct: 241 KKVYY 245
>gi|163801903|ref|ZP_02195800.1| tRNA pseudouridine synthase A [Vibrio sp. AND4]
gi|159174411|gb|EDP59215.1| tRNA pseudouridine synthase A [Vibrio sp. AND4]
Length = 264
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 154 YHARATEAILPCP------VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++ G +
Sbjct: 155 FRAAHCQSLSPCRNMMHLNVTRHGD---YVVIDIKANAFVHHMVRNITGSLIK-VGRGEE 210
Query: 208 EDALLK-LMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ A +K L+DA R+ A EGL LVDV Y PQ +P
Sbjct: 211 KPAWIKSLLDAKDRKLAGATAKAEGLYLVDVDY----PQEFGLP 250
>gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
Length = 284
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G +++ +++ N FL MVRV+ TLV D + + + A R A P AP GL
Sbjct: 209 GEELVAIDVRGNAFLHNMVRVIAGTLVEVGRGHRDASWVARALAAHDRSAAGPTAPAHGL 268
Query: 233 CLVDVGYTNFDPQNSLI 249
VGY P+ +L+
Sbjct: 269 TFEWVGY----PEAALV 281
>gi|256762037|ref|ZP_05502617.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256683288|gb|EEU22983.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
Length = 249
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|428203678|ref|YP_007082267.1| pseudouridylate synthase I [Pleurocapsa sp. PCC 7327]
gi|427981110|gb|AFY78710.1| pseudouridylate synthase I [Pleurocapsa sp. PCC 7327]
Length = 281
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ AN FL MVR+LV LV + + + R AP +GLCL+
Sbjct: 191 LLHIEIQANAFLYGMVRLLVGMLVEVGSGKRSLENFTDIWFNQKREEVKYAAPAKGLCLL 250
Query: 236 DVGYTNF 242
VGY F
Sbjct: 251 RVGYPEF 257
>gi|172038954|ref|YP_001805455.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51142]
gi|354552758|ref|ZP_08972066.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51472]
gi|171700408|gb|ACB53389.1| tRNA pseudouridine synthase [Cyanothece sp. ATCC 51142]
gi|353556080|gb|EHC25468.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51472]
Length = 286
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + ++ R AP +GLCL+ VG
Sbjct: 194 LEIQANGFLYGMVRLLVGLLVEVGSGKRSLANFTEIWQHQQREQVKYSAPAKGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|227555887|ref|ZP_03985934.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|256964165|ref|ZP_05568336.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|257418666|ref|ZP_05595660.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|307274205|ref|ZP_07555413.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|422712957|ref|ZP_16769717.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|422718225|ref|ZP_16774896.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|227175054|gb|EEI56026.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|256954661|gb|EEU71293.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|257160494|gb|EEU90454.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|306509167|gb|EFM78229.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|315573548|gb|EFU85739.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|315582104|gb|EFU94295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
Length = 249
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYEN 249
>gi|218895277|ref|YP_002443688.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
gi|218542262|gb|ACK94656.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
Length = 252
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|166367993|ref|YP_001660266.1| tRNA pseudouridine synthase A [Microcystis aeruginosa NIES-843]
gi|166090366|dbj|BAG05074.1| tRNA pseudouridine synthase 1 [Microcystis aeruginosa NIES-843]
Length = 276
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|75764616|ref|ZP_00744060.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74487896|gb|EAO51668.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 264
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 200 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 259
Query: 237 VGYTN 241
V Y N
Sbjct: 260 VNYNN 264
>gi|425464682|ref|ZP_18843992.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9809]
gi|389833210|emb|CCI22436.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9809]
Length = 276
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|148653728|ref|YP_001280821.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1]
gi|148572812|gb|ABQ94871.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1]
Length = 302
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
HGE + ++ A+ FL MVR L+ TL + L+++ A R P APP
Sbjct: 213 HGE---FIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAPP 269
Query: 230 EGLCLVDVGYTNFDPQNSLIP 250
+GL ++ Y +P +L+P
Sbjct: 270 DGLYFINAYYP--EPMQALLP 288
>gi|228898895|ref|ZP_04063177.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222]
gi|228963242|ref|ZP_04124411.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402562765|ref|YP_006605489.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|434378787|ref|YP_006613431.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
gi|228796500|gb|EEM43939.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228860795|gb|EEN05173.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222]
gi|401791417|gb|AFQ17456.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|401877344|gb|AFQ29511.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
Length = 252
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|428777706|ref|YP_007169493.1| tRNA pseudouridine synthase A [Halothece sp. PCC 7418]
gi|428691985|gb|AFZ45279.1| tRNA pseudouridine synthase A [Halothece sp. PCC 7418]
Length = 282
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV+ + ++ R AP +GLCL+ VG
Sbjct: 195 IEIQADGFLYGMVRLLVGLLVKVGTGELSQAEFTEIWQHKQRDRVKYSAPAKGLCLLRVG 254
Query: 239 YTNF 242
Y +F
Sbjct: 255 YEDF 258
>gi|423364434|ref|ZP_17341924.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD022]
gi|423565500|ref|ZP_17541776.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A1]
gi|401072853|gb|EJP81307.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD022]
gi|401193702|gb|EJR00705.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A1]
Length = 247
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|120554480|ref|YP_958831.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8]
gi|120324329|gb|ABM18644.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8]
Length = 302
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +++ AN FL MVR + L+ ED + +++ R+ APP GL L
Sbjct: 196 EFVVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYL 255
Query: 235 VDVGYTNFDPQNSLIP 250
VDVGY P++ IP
Sbjct: 256 VDVGY----PESFGIP 267
>gi|315917914|ref|ZP_07914154.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC
25563]
gi|313691789|gb|EFS28624.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC
25563]
Length = 251
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL+ M+R+LV TL+ ++ ++ + + R+ AP +GL L
Sbjct: 189 LLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKARQKAGFLAPAKGLTLYK 248
Query: 237 VGY 239
V Y
Sbjct: 249 VYY 251
>gi|399545170|ref|YP_006558478.1| tRNA pseudouridine synthase A [Marinobacter sp. BSs20148]
gi|399160502|gb|AFP31065.1| tRNA pseudouridine synthase A [Marinobacter sp. BSs20148]
Length = 303
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + L+ D + +++ RR APP+GL LVD
Sbjct: 198 LVIDVQANAFLHHMVRNIAGALMAVGCQEQVPDWIGQVLATKDRRQAGVTAPPDGLYLVD 257
Query: 237 VGY 239
VGY
Sbjct: 258 VGY 260
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF-------------------PLND 59
IN+A+P I V Q FH FSA +RRY YI PLN
Sbjct: 94 GINTASPFDISVRWAGQCQGDFHARFSAVYRRYRYIIYNNPVRPSIQRGQVSWNFRPLN- 152
Query: 60 GENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGF 104
EN Q+ + V +F G QS+ ++N+ + +G +
Sbjct: 153 AENMHQAAQALVGEHDFSAFRAAGCQSHSPIRFVQNISVMRKGDY 197
>gi|371778323|ref|ZP_09484645.1| tRNA pseudouridine synthase A [Anaerophaga sp. HS1]
Length = 263
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E R V + A+RFLR MVR +V TL+ +++A R APP+G
Sbjct: 179 ENRYVFVIS--ADRFLRNMVRAIVGTLLDVGRGKISLRDFCDIIEAKDRSRAGTSAPPQG 236
Query: 232 LCLVDVGY 239
L L D+ Y
Sbjct: 237 LYLTDIRY 244
>gi|423462584|ref|ZP_17439378.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X2-1]
gi|401130763|gb|EJQ38419.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X2-1]
Length = 247
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSISEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|325297315|ref|YP_004257232.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170]
gi|324316868|gb|ADY34759.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170]
Length = 268
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I +AR + G V ++ A+RFLR
Sbjct: 145 LFEYTDFTSFSKLHTDV-KTNNCRILYARWEQT---------GADEWVFTIQ--ADRFLR 192
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TLV + ++++A R + P L LVDVGY
Sbjct: 193 NMVRAVVGTLVEVGRGKLTIEGFRRVIEAKNRCSAGTSVPGNALFLVDVGY 243
>gi|254756838|ref|ZP_05208866.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia
94]
Length = 145
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 81 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 140
Query: 237 VGYTN 241
V Y N
Sbjct: 141 VNYNN 145
>gi|425440892|ref|ZP_18821184.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9717]
gi|389718575|emb|CCH97496.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9717]
Length = 276
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|429206306|ref|ZP_19197574.1| tRNA pseudouridine synthase A [Rhodobacter sp. AKP1]
gi|428191027|gb|EKX59571.1| tRNA pseudouridine synthase A [Rhodobacter sp. AKP1]
Length = 255
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P PP+GL L VGY
Sbjct: 191 LRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|423387372|ref|ZP_17364626.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-2]
gi|423526560|ref|ZP_17503005.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB1-1]
gi|401628955|gb|EJS46783.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-2]
gi|402455600|gb|EJV87381.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB1-1]
Length = 247
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
Length = 261
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 86/226 (38%), Gaps = 46/226 (20%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+N+ P IRV++ +V FH SAK + Y Y N + D FH
Sbjct: 78 ALNARLPSDIRVLTAREVPLTFHSRHSAKRKTYRYTI------NTNRFPDVFQRNYQFHH 131
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ N++ + + G+H+ FT R KL +T
Sbjct: 132 PGQL---------NVDAMQASLPYLVGTHD----FTS-----FASRQSTKLSHVRT---- 169
Query: 139 TKASRNIGPPTECFIYHAR-ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVAT 197
IY AR +++ P G+ ++ + + FL+ MVR++V T
Sbjct: 170 --------------IYDARIVVDSLAKIPGT---TGQGIVHFYVTGSGFLQHMVRIIVGT 212
Query: 198 LVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
L+ +++ +++A R A P A +GL L V Y D
Sbjct: 213 LIEIGEGKRTPESIQAILEAKDRTAAGPTAESKGLMLWSVEYEEED 258
>gi|365960544|ref|YP_004942111.1| tRNA pseudouridine synthase A [Flavobacterium columnare ATCC 49512]
gi|365737225|gb|AEW86318.1| tRNA pseudouridine synthase A [Flavobacterium columnare ATCC 49512]
Length = 248
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + A+RFLR MVR +V T+V ++ L+ ++++ R+ P +GL L
Sbjct: 179 LVFTITADRFLRNMVRAIVGTMVNIGTHKITKEDLVSIIESKDRKKAGFSVPAQGLFLSK 238
Query: 237 VGY 239
V Y
Sbjct: 239 VTY 241
>gi|406937015|gb|EKD70602.1| hypothetical protein ACD_46C00484G0020 [uncultured bacterium]
Length = 258
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ AN FL MVR + L++ + + + +++DA RRA A AP GL L+
Sbjct: 180 LVIFEIEANAFLHHMVRNIAGVLMKIGSRYKEPIWMKEVLDAKSRRAAAETAPSGGLYLI 239
Query: 236 DVGYT---NFDPQNSLI 249
+V Y F N +I
Sbjct: 240 NVRYAEPYTFPLTNQMI 256
>gi|229027990|ref|ZP_04184143.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271]
gi|228733378|gb|EEL84207.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271]
Length = 235
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 171 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 230
Query: 237 VGYTN 241
V Y N
Sbjct: 231 VNYNN 235
>gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
Length = 247
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ RR P GL L
Sbjct: 183 LVFRFVGNGFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGKMVPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|427417964|ref|ZP_18908147.1| pseudouridylate synthase I [Leptolyngbya sp. PCC 7375]
gi|425760677|gb|EKV01530.1| pseudouridylate synthase I [Leptolyngbya sp. PCC 7375]
Length = 292
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VEL A FL MVR+++ LV A +L + R APP GLCL+ VG
Sbjct: 204 VELQAAGFLYGMVRLVMGLLVSVGRRRLTPAAFTELWQSGRRDLVKHAAPPRGLCLLRVG 263
Query: 239 YTNF 242
Y +F
Sbjct: 264 YQHF 267
>gi|423653076|ref|ZP_17628375.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD200]
gi|401303184|gb|EJS08747.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD200]
Length = 247
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|228937445|ref|ZP_04100091.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970331|ref|ZP_04130990.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976901|ref|ZP_04137313.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407]
gi|384184228|ref|YP_005570124.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
gi|228782871|gb|EEM31037.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407]
gi|228789440|gb|EEM37360.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822278|gb|EEM68260.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326937937|gb|AEA13833.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 252
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|229067907|ref|ZP_04201224.1| tRNA pseudouridine synthase A [Bacillus cereus F65185]
gi|228715266|gb|EEL67125.1| tRNA pseudouridine synthase A [Bacillus cereus F65185]
Length = 252
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|365164116|ref|ZP_09360202.1| tRNA pseudouridine synthase A 1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423415958|ref|ZP_17393078.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3O-2]
gi|423422375|ref|ZP_17399406.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-2]
gi|423428248|ref|ZP_17405252.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4O-1]
gi|423439403|ref|ZP_17416341.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X12-1]
gi|423507832|ref|ZP_17484399.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HD73]
gi|363613417|gb|EHL64934.1| tRNA pseudouridine synthase A 1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401094405|gb|EJQ02486.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3O-2]
gi|401112757|gb|EJQ20631.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X12-1]
gi|401120092|gb|EJQ27893.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-2]
gi|401127170|gb|EJQ34899.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4O-1]
gi|402442619|gb|EJV74540.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HD73]
Length = 247
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|218230830|ref|YP_002364991.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|228950690|ref|ZP_04112824.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229077443|ref|ZP_04210092.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2]
gi|229148551|ref|ZP_04276807.1| tRNA pseudouridine synthase A [Bacillus cereus m1550]
gi|229176742|ref|ZP_04304146.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W]
gi|449086809|ref|YP_007419250.1| TruA [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|218158787|gb|ACK58779.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|228606785|gb|EEK64202.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W]
gi|228634967|gb|EEK91540.1| tRNA pseudouridine synthase A [Bacillus cereus m1550]
gi|228705869|gb|EEL58206.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2]
gi|228809041|gb|EEM55526.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|449020566|gb|AGE75729.1| TruA [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 252
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|387769404|ref|ZP_10125667.1| tRNA pseudouridine synthase A [Pasteurella bettyae CCUG 2042]
gi|386906713|gb|EIJ71438.1| tRNA pseudouridine synthase A [Pasteurella bettyae CCUG 2042]
Length = 264
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L++ R AP A PEGL LV
Sbjct: 181 IIVDIKANAFVHHMVRNIVGSLMEVGCGRQPVEWMKWLLEQKNRSLAAPTAKPEGLYLVH 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P+N +P
Sbjct: 241 VTY----PENYNLP 250
>gi|410672513|ref|YP_006924884.1| tRNA pseudouridine synthase A 1 [Bacillus thuringiensis Bt407]
gi|452196520|ref|YP_007476601.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|409171642|gb|AFV15947.1| tRNA pseudouridine synthase A 1 [Bacillus thuringiensis Bt407]
gi|452101913|gb|AGF98852.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 247
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|149377425|ref|ZP_01895168.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893]
gi|149358266|gb|EDM46745.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893]
Length = 298
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + L+ + + ++++A R APP GL LVD
Sbjct: 198 VVIDVQANAFLHHMVRNIAGALMSVGTGKQRPEWIREILEARDRTVAGVTAPPHGLYLVD 257
Query: 237 VGYTN 241
VGY +
Sbjct: 258 VGYPD 262
>gi|425452040|ref|ZP_18831858.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 7941]
gi|389766323|emb|CCI08007.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 7941]
Length = 271
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|423590571|ref|ZP_17566633.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD045]
gi|423632051|ref|ZP_17607797.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD154]
gi|423645039|ref|ZP_17620655.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD166]
gi|423646277|ref|ZP_17621847.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD169]
gi|51340814|sp|Q814C2.2|TRUA1_BACCR RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|401220208|gb|EJR26850.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD045]
gi|401262770|gb|EJR68908.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD154]
gi|401267734|gb|EJR73790.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD166]
gi|401287906|gb|EJR93673.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD169]
Length = 247
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|302346677|ref|YP_003814975.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC
25845]
gi|302150885|gb|ADK97146.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC
25845]
Length = 253
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 178 CVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDV 237
C + ANRFLR MVR +V TLV D K++D R P L L +V
Sbjct: 192 CFVITANRFLRNMVRAVVGTLVEVGRGRLSLDEFKKIVDGGTRSDAGESMPGNALFLWEV 251
Query: 238 GY 239
Y
Sbjct: 252 KY 253
>gi|430760516|ref|YP_007216373.1| tRNA pseudouridine synthase A [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010140|gb|AGA32892.1| tRNA pseudouridine synthase A [Thioalkalivibrio nitratireducens DSM
14787]
Length = 283
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H +GR V+ +++ AN FL MVR + L+ + D + ++M A RRA+ AP
Sbjct: 183 HRQGRHVV-LDVHANAFLHHMVRNIAGVLIPIGQGRREADWVHEIMQARDRRASGMTAPA 241
Query: 230 EGLCLVDVGYTNFDPQNSL 248
GL LV V ++DP + L
Sbjct: 242 GGLYLVGV---DYDPVHRL 257
>gi|425454941|ref|ZP_18834666.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9807]
gi|389804267|emb|CCI16903.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9807]
Length = 276
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|422301766|ref|ZP_16389131.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9806]
gi|389789136|emb|CCI14786.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9806]
Length = 271
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQHRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|407708090|ref|YP_006831675.1| phosphoribosylformylglycinamidine synthase 1 [Bacillus
thuringiensis MC28]
gi|407385775|gb|AFU16276.1| tRNA pseudouridine synthase A [Bacillus thuringiensis MC28]
Length = 257
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 193 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKVDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 252
Query: 237 VGYTN 241
V Y N
Sbjct: 253 VNYNN 257
>gi|390953197|ref|YP_006416955.1| pseudouridylate synthase I [Aequorivita sublithincola DSM 14238]
gi|390419183|gb|AFL79940.1| pseudouridylate synthase I [Aequorivita sublithincola DSM 14238]
Length = 257
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 167 VNDHGEGRK-VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP 225
V H E + + + A+RFLR MVR +V TL+ + +++ R A
Sbjct: 176 VKAHWETKNNTLIFTIAADRFLRNMVRAIVGTLLNVGYEKTSLEDFKEILKGKSREAAGA 235
Query: 226 PAPPEGLCLVDVGY 239
AP GL L V Y
Sbjct: 236 SAPAHGLYLTKVFY 249
>gi|229083462|ref|ZP_04215810.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44]
gi|228699895|gb|EEL52532.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44]
Length = 252
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLDVGQGKLDADSIPEILAKQNRKFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|425469566|ref|ZP_18848489.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9701]
gi|389880535|emb|CCI38694.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9701]
Length = 276
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|425458624|ref|ZP_18838112.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9808]
gi|389826329|emb|CCI23286.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9808]
Length = 271
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQHRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|425444712|ref|ZP_18824757.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9443]
gi|389735491|emb|CCI01016.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9443]
Length = 276
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|67923564|ref|ZP_00517037.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501]
gi|67854590|gb|EAM49876.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501]
Length = 285
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + R AP +GLCL+ VG
Sbjct: 194 LEIQANGFLYGMVRLLVGMLVEVGSGKRSLHNFTDIWQNQRRELVKYSAPAKGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206972233|ref|ZP_03233180.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|228956583|ref|ZP_04118379.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229041047|ref|ZP_04189810.1| tRNA pseudouridine synthase A [Bacillus cereus AH676]
gi|229125659|ref|ZP_04254691.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4]
gi|229142948|ref|ZP_04271389.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24]
gi|229188427|ref|ZP_04315475.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876]
gi|296500975|ref|YP_003662675.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
gi|29893951|gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206732807|gb|EDZ49982.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|228595101|gb|EEK52872.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876]
gi|228640569|gb|EEK96958.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24]
gi|228657851|gb|EEL13657.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4]
gi|228727344|gb|EEL78538.1| tRNA pseudouridine synthase A [Bacillus cereus AH676]
gi|228803148|gb|EEM49970.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296322027|gb|ADH04955.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
Length = 252
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|416398029|ref|ZP_11686789.1| tRNA pseudouridine synthase A [Crocosphaera watsonii WH 0003]
gi|357262608|gb|EHJ11722.1| tRNA pseudouridine synthase A [Crocosphaera watsonii WH 0003]
Length = 285
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + R AP +GLCL+ VG
Sbjct: 194 LEIQANGFLYGMVRLLVGMLVEVGSGKRSLHNFTDIWQNQRRELVKYSAPAKGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>gi|288802284|ref|ZP_06407724.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18]
gi|288335251|gb|EFC73686.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18]
Length = 253
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 178 CVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDV 237
C + ANRFLR MVR +V TLV D K++D R P L L +V
Sbjct: 192 CFVITANRFLRNMVRAVVGTLVEVGRGRLSLDDFKKIVDGGTRSDAGESMPGNALFLWEV 251
Query: 238 GY 239
Y
Sbjct: 252 KY 253
>gi|218440649|ref|YP_002378978.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424]
gi|218173377|gb|ACK72110.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424]
Length = 306
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV L+ + ++ R AP +GLCL+ VG
Sbjct: 194 IEIQANGFLYGMVRLLVGMLIEVGNKQRSIEDFTRIWQNQRREEVKYAAPAKGLCLLRVG 253
Query: 239 YTNF 242
Y F
Sbjct: 254 YPEF 257
>gi|251792608|ref|YP_003007334.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|422336160|ref|ZP_16417133.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus F0387]
gi|247534001|gb|ACS97247.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|353346346|gb|EHB90631.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus F0387]
Length = 261
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ + L L+ R AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQSVEWLAWLLAQKDRTLAAPTAKPEGLYL 238
Query: 235 VDVGY 239
V+V Y
Sbjct: 239 VNVFY 243
>gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
Length = 265
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 147 PPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGA 206
P + + + I + + G+ + + N FL M+R+L TL+
Sbjct: 168 PKAQSLLQGGSSVREIYRFSMEEEGD---YLHFSVEGNGFLYHMIRILAGTLLELGRGRI 224
Query: 207 DEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
L ++++ R P AP +GLCL+++ Y +F
Sbjct: 225 SLSQLEEILEKKDRTLAGPTAPAKGLCLMNLDYGDFQ 261
>gi|440753711|ref|ZP_20932913.1| tRNA pseudouridine synthase A [Microcystis aeruginosa TAIHU98]
gi|440173917|gb|ELP53286.1| tRNA pseudouridine synthase A [Microcystis aeruginosa TAIHU98]
Length = 271
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNF 242
VGY +F
Sbjct: 247 RVGYADF 253
>gi|348590140|ref|YP_004874602.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
gi|347974044|gb|AEP36579.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
Length = 268
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ L AN FL MVR ++ L+ + + +L+DA R+ +AP P+GL
Sbjct: 183 LIFTLRANGFLHHMVRNIIGALLYVGMGRFKAEYISELIDAKDRKFSAPTFMPDGLYFAC 242
Query: 237 VGY-------TNFDPQNSL 248
V Y NFDP +S
Sbjct: 243 VDYPDKYDIPQNFDPNHSF 261
>gi|332665403|ref|YP_004448191.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
gi|332334217|gb|AEE51318.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
Length = 249
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+ D E R V + +NRFLR MVR++V + + L M+ R A
Sbjct: 175 IFDLKEQRAVF--HITSNRFLRGMVRLIVGMCIGVGTGQISMEELKTAMEQQSRLKKATS 232
Query: 227 APPEGLCLVDVGY 239
APPEGL L + Y
Sbjct: 233 APPEGLYLGGIKY 245
>gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
Length = 245
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+E+V N FL KM+R+LV TLV D + +MD R AP GL L +
Sbjct: 183 IEIVFSGNGFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPETAPAHGLTLTE 242
Query: 237 VGY 239
V Y
Sbjct: 243 VKY 245
>gi|390439174|ref|ZP_10227588.1| tRNA pseudouridine synthase A [Microcystis sp. T1-4]
gi|389837434|emb|CCI31712.1| tRNA pseudouridine synthase A [Microcystis sp. T1-4]
Length = 276
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|349686489|ref|ZP_08897631.1| tRNA pseudouridine synthase A [Gluconacetobacter oboediens 174Bp2]
Length = 273
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E A FL VR + TL + + + + A RRA P APPEGLCL
Sbjct: 204 VVIEAEARSFLHHQVRNMAGTLKLVGEGRWAPERVEQALAARDRRAGGPTAPPEGLCLTG 263
Query: 237 VGY 239
VGY
Sbjct: 264 VGY 266
>gi|422728411|ref|ZP_16784829.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
gi|315151105|gb|EFT95121.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
Length = 249
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y N
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVRYEN 249
>gi|229053988|ref|ZP_04195422.1| tRNA pseudouridine synthase A [Bacillus cereus AH603]
gi|228721406|gb|EEL72927.1| tRNA pseudouridine synthase A [Bacillus cereus AH603]
Length = 252
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|340352914|ref|ZP_08675748.1| tRNA pseudouridine synthase A [Prevotella pallens ATCC 700821]
gi|339612230|gb|EGQ17043.1| tRNA pseudouridine synthase A [Prevotella pallens ATCC 700821]
Length = 258
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%)
Query: 149 TECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADE 208
T C + A+ + D+ + C + ANRFLR MVR +V TLV
Sbjct: 165 TICNLTEAQWVRCNTELSIYDNTAETESWCFVITANRFLRNMVRAVVGTLVEVGRGRLSI 224
Query: 209 DALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D K++D R P L L ++ Y
Sbjct: 225 DDFCKIVDTGTRSDAGESMPGNALFLWNIEY 255
>gi|373106481|ref|ZP_09520783.1| tRNA pseudouridine synthase A [Stomatobaculum longum]
gi|371652175|gb|EHO17593.1| tRNA pseudouridine synthase A [Stomatobaculum longum]
Length = 357
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 157 RATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMD 216
R A L + G ++ + + FL MVR+L TL+ + D A K +
Sbjct: 169 RIFRAELTAECEESGSFAGLITFRITGSGFLYHMVRILAGTLLEIGSGKKDAAAFRKALR 228
Query: 217 ATCRRATAPPAPPEGLCLVDVGY 239
+ RR T P AP GL L ++ Y
Sbjct: 229 SRARRDTGPVAPAAGLILREIRY 251
>gi|423514594|ref|ZP_17491101.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-1]
gi|423514994|ref|ZP_17491475.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-4]
gi|401168495|gb|EJQ75758.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-4]
gi|402441994|gb|EJV73938.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-1]
Length = 247
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|163938150|ref|YP_001643034.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|163860347|gb|ABY41406.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
Length = 252
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|423578549|ref|ZP_17554660.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD014]
gi|423638145|ref|ZP_17613797.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD156]
gi|401221274|gb|EJR27898.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD014]
gi|401271869|gb|EJR77872.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD156]
Length = 247
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 IIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|387789533|ref|YP_006254598.1| pseudouridylate synthase I [Solitalea canadensis DSM 3403]
gi|379652366|gb|AFD05422.1| pseudouridylate synthase I [Solitalea canadensis DSM 3403]
Length = 271
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + A+RFLR MVR +V TL+ D + K++++ R P GL L +
Sbjct: 200 LVFHITADRFLRNMVRAIVGTLLEVGKGTLSIDGIRKVIESKNRSKAGESVPAAGLFLTE 259
Query: 237 VGYTNFDPQNSL 248
+ Y P+ +L
Sbjct: 260 ITY----PEETL 267
>gi|424836140|ref|ZP_18260797.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
gi|365977542|gb|EHN13641.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
Length = 246
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + +++A RR P AP +GL + V Y
Sbjct: 192 FLHKMIRILTGTLIEVGLHNMSTIDVKSILEAKDRRKAGPTAPSQGLFMTSVAY 245
>gi|229094864|ref|ZP_04225869.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29]
gi|229100941|ref|ZP_04231745.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28]
gi|229113818|ref|ZP_04243253.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3]
gi|228669689|gb|EEL25096.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3]
gi|228682520|gb|EEL36593.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28]
gi|228688607|gb|EEL42480.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29]
Length = 252
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|228919092|ref|ZP_04082471.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840617|gb|EEM85879.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 252
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 188 IIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|390957415|ref|YP_006421172.1| pseudouridylate synthase I [Terriglobus roseus DSM 18391]
gi|390412333|gb|AFL87837.1| pseudouridylate synthase I [Terriglobus roseus DSM 18391]
Length = 302
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL MVR +V T V A DA+ ++ A RR APP+GL LV
Sbjct: 222 LLVYRVTGSGFLHHMVRNIVGTCVEIGAGRMPADAIPAILAAHDRRQAGATAPPQGLHLV 281
Query: 236 DVGY 239
+V Y
Sbjct: 282 EVNY 285
>gi|319942390|ref|ZP_08016704.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B]
gi|319804078|gb|EFW00986.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B]
Length = 269
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 157 RATEAILPCPVNDHGEGRKV-----MCVELVANRFLRKMVRVLVATLVREAAAGADEDAL 211
RA+E PV E + V + V + AN FL+ MVR +V L+ + +
Sbjct: 164 RASECQAKTPVRTISELKIVRRGALVGVRITANAFLQHMVRNIVGALIYVGTGRERPEWI 223
Query: 212 LKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+++ A R A AP P GL L VGY P++ +P
Sbjct: 224 AEVLAAKSRDAAAPTFSPAGLYLTGVGY----PEHPHLP 258
>gi|229009651|ref|ZP_04166877.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048]
gi|229131150|ref|ZP_04260062.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196]
gi|229165130|ref|ZP_04292925.1| tRNA pseudouridine synthase A [Bacillus cereus AH621]
gi|228618393|gb|EEK75423.1| tRNA pseudouridine synthase A [Bacillus cereus AH621]
gi|228652363|gb|EEL08288.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196]
gi|228751673|gb|EEM01473.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048]
Length = 252
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|423485441|ref|ZP_17462123.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BtB2-4]
gi|423491166|ref|ZP_17467810.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER057]
gi|423502038|ref|ZP_17478655.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER074]
gi|423526356|ref|ZP_17502805.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA4-10]
gi|423556862|ref|ZP_17533165.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MC67]
gi|423597031|ref|ZP_17573041.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD048]
gi|423671591|ref|ZP_17646595.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM034]
gi|423672605|ref|ZP_17647544.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM062]
gi|401151432|gb|EJQ58883.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER074]
gi|401162091|gb|EJQ69450.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER057]
gi|401163406|gb|EJQ70752.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA4-10]
gi|401194177|gb|EJR01169.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MC67]
gi|401218208|gb|EJR24892.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD048]
gi|401291980|gb|EJR97645.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM034]
gi|401311465|gb|EJS16760.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM062]
gi|402441632|gb|EJV73582.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BtB2-4]
Length = 247
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|423381811|ref|ZP_17359094.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1O-2]
gi|423439680|ref|ZP_17416586.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X2-1]
gi|423450163|ref|ZP_17427041.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5O-1]
gi|423467937|ref|ZP_17444705.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-1]
gi|423537337|ref|ZP_17513755.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB2-9]
gi|423543065|ref|ZP_17519453.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB4-10]
gi|423543629|ref|ZP_17519987.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB5-5]
gi|423620250|ref|ZP_17596081.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD115]
gi|423626916|ref|ZP_17602691.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD148]
gi|401126786|gb|EJQ34520.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5O-1]
gi|401166765|gb|EJQ74065.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB4-10]
gi|401187794|gb|EJQ94866.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB5-5]
gi|401248810|gb|EJR55131.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD115]
gi|401250111|gb|EJR56415.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD148]
gi|401628437|gb|EJS46278.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1O-2]
gi|402411804|gb|EJV44167.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-1]
gi|402421861|gb|EJV54105.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X2-1]
gi|402459043|gb|EJV90781.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB2-9]
Length = 247
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|399116028|emb|CCG18832.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis 14/45]
Length = 268
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ L AN FL MVR ++ L+ + + +L+DA R+ +AP P+GL
Sbjct: 183 LIFTLRANGFLHHMVRNIIGALLYVGMGRFKAEYISELIDAKDRKFSAPTFMPDGLYFAC 242
Query: 237 VGY-------TNFDPQNSL 248
V Y NFDP +S
Sbjct: 243 VDYPDKYDIPQNFDPNHSF 261
>gi|425434123|ref|ZP_18814595.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9432]
gi|389677610|emb|CCH93463.1| tRNA pseudouridine synthase A [Microcystis aeruginosa PCC 9432]
Length = 271
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 298
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARAT-EAILPCPVN-----DHGEGRK 175
QR +YK A + + N+ F A AT E +P P+ D +
Sbjct: 141 FQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGS 200
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA----TAPPAPPEG 231
++ +E+ + FL + VR +VA L++ D D + +++ RR T+ PA P G
Sbjct: 201 LLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHG 260
Query: 232 LCLVDVGY 239
LCLV V Y
Sbjct: 261 LCLVSVKY 268
>gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola potens JR]
gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR]
Length = 246
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 113 FTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGE 172
F C++N+ R K S+ D A R G I + V GE
Sbjct: 132 FVPCKLNVDNMR---KAASFLVGQHDFSAFRAAGSTARSSI------RTMYRAEVEQEGE 182
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
++ V L AN FL MVR++ TL+ + + ++ + R P PP+GL
Sbjct: 183 ---LIHVYLEANGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRTLAGPTVPPQGL 239
Query: 233 CLVDVGY 239
CL+ V Y
Sbjct: 240 CLMRVEY 246
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 182 VANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR+L TL+ + + + +++ A R APPEGL L+ VGY
Sbjct: 191 TGNGFLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGRTAPPEGLFLLHVGY 248
>gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
Length = 263
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRAT-APPAPPEGLCL 234
++ +E+ A FL +MVR +V L + + ++++ ++ PPAPPEGL L
Sbjct: 159 ILVIEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLEGKFNKSKKVPPAPPEGLLL 218
Query: 235 VDVGYTNFD 243
VDV Y +
Sbjct: 219 VDVKYEGIE 227
>gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
Length = 245
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG KV+ + N FL MVR++V TL+ DA+ +++D+ R+ PP+G
Sbjct: 173 EGDKVI-FTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRILDSKDRKKAGKTVPPQG 231
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 232 LYLNKVYY 239
>gi|228931644|ref|ZP_04094550.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228828072|gb|EEM73800.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 252
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|295093665|emb|CBK82756.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+ + N FL MVR++V TL++ ED + +++A R P A +GL LV++
Sbjct: 186 IRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILEAKDRTKAGPKAEAKGLTLVEIK 245
Query: 239 Y 239
Y
Sbjct: 246 Y 246
>gi|293374636|ref|ZP_06620951.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909]
gi|325845439|ref|ZP_08168732.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1]
gi|292646726|gb|EFF64721.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909]
gi|325488545|gb|EGC90961.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1]
Length = 258
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
V N FLR M+R++V TL++ + + +++A R+ A P+GL L V Y
Sbjct: 184 FVGNGFLRYMIRIMVGTLIQIGEGKKKPEDIKTIIEAKNRKLAGHTAKPQGLYLQRVDY- 242
Query: 241 NFDPQNSLIP 250
P+ L P
Sbjct: 243 ---PEEMLKP 249
>gi|229159315|ref|ZP_04287339.1| tRNA pseudouridine synthase A [Bacillus cereus R309803]
gi|228624207|gb|EEK81009.1| tRNA pseudouridine synthase A [Bacillus cereus R309803]
Length = 252
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|229170993|ref|ZP_04298594.1| tRNA pseudouridine synthase A [Bacillus cereus MM3]
gi|228612533|gb|EEK69754.1| tRNA pseudouridine synthase A [Bacillus cereus MM3]
Length = 252
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|343496416|ref|ZP_08734513.1| tRNA pseudouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821198|gb|EGU55989.1| tRNA pseudouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 263
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I+ V+ HG + +++ AN F+ MVR + +L+ + + + L++A RR
Sbjct: 169 IMHLNVSRHG---NYVVIDIKANAFVHHMVRNITGSLIEVGRGNQEPEWIKWLLEAKDRR 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|229015543|ref|ZP_04172540.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273]
gi|229021754|ref|ZP_04178334.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272]
gi|228739541|gb|EEL89957.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272]
gi|228745766|gb|EEL95771.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273]
Length = 252
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 247
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A+ FL MVR +V TL++ + + +++D R+ AP AP GL +
Sbjct: 182 ILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLYFIK 241
Query: 237 VGYTNF 242
Y+N
Sbjct: 242 AFYSNL 247
>gi|118444045|ref|YP_877232.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
gi|118134501|gb|ABK61545.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
Length = 246
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 59/232 (25%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQ--SID 68
+ P + A+NS P I + + +V FH F +K ++Y+Y NRE+ +ID
Sbjct: 71 IPPEKFKYAMNSKLPKDIVIKNSCEVPMDFHARFQSKGKKYVYTIL-----NREEPPTID 125
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGF-GSHEKPRNFTICRVNLLLQRLEG 127
V V +F+ +V +L+ + F GSHE
Sbjct: 126 RGV-VYHFNKKLDV------------DLMRSASKYFIGSHE------------------- 153
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ +F + +S T IY+ T+ + GEG FL
Sbjct: 154 ----FDSFYKKAGSSVKSTLRT---IYYCDVTKVDDIIKIIVIGEG------------FL 194
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR++ TLV A + + ++ A R PP+GLCL +V Y
Sbjct: 195 YNMVRIIAGTLVEVGIARIKPEDIKNIILAKDREKAGRSLPPQGLCLEEVLY 246
>gi|196041154|ref|ZP_03108450.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
gi|196028089|gb|EDX66700.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
Length = 252
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|156743919|ref|YP_001434048.1| tRNA pseudouridine synthase ACD [Roseiflexus castenholzii DSM
13941]
gi|189029997|sp|A7NR34.1|TRUA_ROSCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|156235247|gb|ABU60030.1| tRNA pseudouridine synthase A [Roseiflexus castenholzii DSM 13941]
Length = 270
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G+ ++ +++ AN FLR MVR LV TL++ D D ++ RRA AP GL
Sbjct: 181 GQPLVLIDVAANAFLRHMVRNLVGTLIQVGEGRIDADGFAAVLAGANRRARV-LAPAHGL 239
Query: 233 CLVDVGY 239
L+ V Y
Sbjct: 240 YLMAVRY 246
>gi|406989097|gb|EKE08911.1| hypothetical protein ACD_16C00235G0007 [uncultured bacterium]
Length = 245
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ V+ A FL +R++V TL R + ++++++A R+A P AP GL L
Sbjct: 181 EIILVKANARSFLHHQIRIIVGTLKRIGEGAWAPEKIIQILEAKDRKAAGPTAPAHGLYL 240
Query: 235 VDVGY 239
++ +
Sbjct: 241 TEIKF 245
>gi|423393405|ref|ZP_17370631.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-3]
gi|423421692|ref|ZP_17398781.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-1]
gi|401096811|gb|EJQ04848.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-1]
gi|401629512|gb|EJS47325.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-3]
Length = 247
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|300119545|ref|ZP_07057089.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|298723017|gb|EFI63915.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
Length = 252
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|225570923|ref|ZP_03779946.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM
15053]
gi|225160385|gb|EEG73004.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM
15053]
Length = 282
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++ TL+R + + + ++++A R PP GL LV+
Sbjct: 218 IIMRITGNGFLYNMVRIIAGTLIRVGRGFYEPEKVKEILEAKERTGAGVTVPPNGLVLVE 277
Query: 237 VGY 239
+ Y
Sbjct: 278 IDY 280
>gi|118475910|ref|YP_893061.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|118415135|gb|ABK83554.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
Length = 264
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 200 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 259
Query: 237 VGYTN 241
V Y N
Sbjct: 260 VNYNN 264
>gi|81429336|ref|YP_396337.1| tRNA pseudouridine synthase A [Lactobacillus sakei subsp. sakei
23K]
gi|123742201|sp|Q38UV3.1|TRUA_LACSS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|78610979|emb|CAI56031.1| tRNA pseudouridylate synthase A (Pseudouridylate synthase I)
[Lactobacillus sakei subsp. sakei 23K]
Length = 249
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 74/221 (33%), Gaps = 52/221 (23%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+NS P + V+ FH FS +RY+Y L H
Sbjct: 80 ALNSLLPLDMEVVDSQLADDDFHARFSTVGKRYMYRVDLG------------------HY 121
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+N ++ G Y P + R+ L + G Y +FA
Sbjct: 122 TNPFKRRYTGHY-------------------PYPIDVERIKAALSDVMGTH-DYTSFA-- 159
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A+ + IY A + E + E N FL MVR+LVATL
Sbjct: 160 --AAGGVIKDKVRTIYEATVV----------YNEAENELIFEFHGNGFLYNMVRILVATL 207
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ D L+L + R+ AP GL L +V Y
Sbjct: 208 LEIGNGRRDVHDFLRLYEVKDRQQARSTAPASGLYLKEVYY 248
>gi|170689686|ref|ZP_02880864.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|177656196|ref|ZP_02937177.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|190567334|ref|ZP_03020248.1| tRNA pseudouridine synthase A [Bacillus anthracis str.
Tsiankovskii-I]
gi|196036037|ref|ZP_03103438.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|218901347|ref|YP_002449181.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|225862194|ref|YP_002747572.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|227812815|ref|YP_002812824.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|228912881|ref|ZP_04076528.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925395|ref|ZP_04088491.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228943947|ref|ZP_04106332.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089273|ref|ZP_04220554.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42]
gi|229119804|ref|ZP_04249065.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201]
gi|229182536|ref|ZP_04309787.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1]
gi|229604554|ref|YP_002864793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|254686641|ref|ZP_05150500.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066]
gi|254726279|ref|ZP_05188061.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055]
gi|254735284|ref|ZP_05192992.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western
North America USA6153]
gi|254739476|ref|ZP_05197174.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B]
gi|254755530|ref|ZP_05207564.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum]
gi|301051879|ref|YP_003790090.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|421510470|ref|ZP_15957363.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|421640558|ref|ZP_16081140.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
gi|170666357|gb|EDT17142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|172079844|gb|EDT64958.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|190561461|gb|EDV15432.1| tRNA pseudouridine synthase A [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991406|gb|EDX55373.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|218535501|gb|ACK87899.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|225789774|gb|ACO29991.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|227005095|gb|ACP14838.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|228600991|gb|EEK58560.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1]
gi|228663705|gb|EEL19284.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201]
gi|228694112|gb|EEL47794.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42]
gi|228815780|gb|EEM62016.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228834317|gb|EEM79858.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846817|gb|EEM91822.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268962|gb|ACQ50599.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|300374048|gb|ADK02952.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|401819552|gb|EJT18729.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|403392374|gb|EJY89628.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
Length = 252
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|220906745|ref|YP_002482056.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425]
gi|219863356|gb|ACL43695.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425]
Length = 282
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL M+R+LV LV+ + ++ R AP GLCL+ VG
Sbjct: 193 IEVQASGFLYGMMRLLVGMLVQVGTGERSLASFTQIWQKQQRDQVKYAAPARGLCLLRVG 252
Query: 239 YTNF 242
Y NF
Sbjct: 253 YDNF 256
>gi|443666890|ref|ZP_21133835.1| tRNA pseudouridine synthase A [Microcystis aeruginosa DIANCHI905]
gi|159027087|emb|CAO89272.1| truA [Microcystis aeruginosa PCC 7806]
gi|443331180|gb|ELS45854.1| tRNA pseudouridine synthase A [Microcystis aeruginosa DIANCHI905]
Length = 271
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGLCLV 235
+E+ AN FL MVR+LV LV G E +L D R AP +GLCL+
Sbjct: 190 MEIQANGFLYGMVRLLVGMLVE---VGTGERSLENFTDIWVNQRRELVKYAAPAKGLCLL 246
Query: 236 DVGYTNFDPQNSL 248
VGY +F +S+
Sbjct: 247 RVGYADFPFADSV 259
>gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase A [Arabidopsis thaliana]
gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana]
gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana]
Length = 323
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARAT-EAILPCPVN-----DHGEGRK 175
QR +YK A + + N+ F A AT E +P P+ D +
Sbjct: 166 FQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGS 225
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA----TAPPAPPEG 231
++ +E+ + FL + VR +VA L++ D D + +++ RR T+ PA P G
Sbjct: 226 LLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHG 285
Query: 232 LCLVDVGY 239
LCLV V Y
Sbjct: 286 LCLVSVKY 293
>gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|49476722|ref|YP_034493.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52145077|ref|YP_081752.1| tRNA pseudouridine synthase A [Bacillus cereus E33L]
gi|165873347|ref|ZP_02217948.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167642077|ref|ZP_02400301.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|196046214|ref|ZP_03113441.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|270000591|ref|YP_003329029.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|291612229|ref|YP_003541012.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|423553924|ref|ZP_17530251.1| tRNA pseudouridine synthase A 1 [Bacillus cereus ISP3191]
gi|62901423|sp|Q63H59.1|TRUA1_BACCZ RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|62901430|sp|Q6HPM7.1|TRUA1_BACHK RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|62901432|sp|Q6I4Q2.1|TRUA1_BACAN RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|49177103|gb|AAT52479.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51978546|gb|AAU20096.1| tRNA-pseudouridylate synthase I [Bacillus cereus E33L]
gi|164710915|gb|EDR16491.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167509964|gb|EDR85386.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|196022959|gb|EDX61639.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|224552852|gb|ACN55064.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|269850235|gb|ACZ49980.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|401182131|gb|EJQ89270.1| tRNA pseudouridine synthase A 1 [Bacillus cereus ISP3191]
Length = 247
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
gi|51316699|sp|Q73F64.1|TRUA1_BACC1 RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
Length = 247
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|423405134|ref|ZP_17382307.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-2]
gi|423479977|ref|ZP_17456691.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-1]
gi|401645504|gb|EJS63159.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-2]
gi|402423961|gb|EJV56157.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-1]
Length = 247
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|229074203|ref|ZP_04207249.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18]
gi|228708973|gb|EEL61100.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|402554270|ref|YP_006595541.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
gi|401795480|gb|AFQ09339.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|423456237|ref|ZP_17433090.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X1-1]
gi|401130836|gb|EJQ38491.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X1-1]
Length = 247
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|229194532|ref|ZP_04321335.1| tRNA pseudouridine synthase A [Bacillus cereus m1293]
gi|384178049|ref|YP_005563811.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|228588998|gb|EEK47013.1| tRNA pseudouridine synthase A [Bacillus cereus m1293]
gi|324324133|gb|ADY19393.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|206978041|ref|ZP_03238926.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217957717|ref|YP_002336261.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|229136988|ref|ZP_04265615.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26]
gi|375282240|ref|YP_005102675.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
gi|206743754|gb|EDZ55176.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217063029|gb|ACJ77279.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|228646526|gb|EEL02733.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26]
gi|358350763|dbj|BAL15935.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|152979369|ref|YP_001344998.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z]
gi|171704324|sp|A6VQ16.1|TRUA_ACTSZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|150841092|gb|ABR75063.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z]
Length = 264
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V HG + + V++ AN F+ MVR +V +L+ + + + L++ R+ AP
Sbjct: 174 VTRHG---RYIVVDIQANAFVHHMVRNIVGSLMEVGSGRQPVEWMKWLLEQRNRKLAAPT 230
Query: 227 APPEGLCLVDVGY 239
A P+GL LV V Y
Sbjct: 231 AKPQGLYLVRVTY 243
>gi|389852268|ref|YP_006354502.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
gi|388249574|gb|AFK22427.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
Length = 266
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR-ATAPPAPPEGLC 233
+++ +E+ FL +MVR +V+ + + D + + +++ RR PPAPPEGL
Sbjct: 158 RIVVIEVEGRSFLWEMVRRIVSAIKLCSLGMLDREEIKEMLAGKFRRHRKVPPAPPEGLI 217
Query: 234 LVDVGYTN 241
L D+ Y +
Sbjct: 218 LWDIKYES 225
>gi|423614568|ref|ZP_17590425.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD107]
gi|401237412|gb|EJR43864.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD107]
Length = 247
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC
27560]
gi|149735960|gb|EDM51846.1| tRNA pseudouridine synthase A [Eubacterium ventriosum ATCC 27560]
Length = 246
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ + + N FL MVR++V TL++ + + ++++A R P AP GL LV
Sbjct: 181 VISIRITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGPKAPACGLTLV 240
Query: 236 DVGYT 240
+ Y+
Sbjct: 241 GIEYS 245
>gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 323
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARAT-EAILPCPVN-----DHGEGRK 175
QR +YK A + + N+ F A AT E +P P+ D +
Sbjct: 166 FQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGS 225
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA----TAPPAPPEG 231
++ +E+ + FL + VR +VA L++ D D + +++ RR T+ PA P G
Sbjct: 226 LLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHG 285
Query: 232 LCLVDVGY 239
LCLV V Y
Sbjct: 286 LCLVSVKY 293
>gi|65317587|ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012]
gi|376264171|ref|YP_005116883.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|386734008|ref|YP_006207189.1| tRNA pseudouridine synthase A 1 [Bacillus anthracis str. H9401]
gi|364509971|gb|AEW53370.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|384383860|gb|AFH81521.1| tRNA pseudouridine synthase A 1 [Bacillus anthracis str. H9401]
Length = 257
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 193 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 252
Query: 237 VGYTN 241
V Y N
Sbjct: 253 VNYNN 257
>gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior]
Length = 398
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 36/229 (15%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
IN P IRV + +V++ F+ R Y Y+ P +QS+
Sbjct: 124 VINQFLPDAIRVFGIKRVTKGFNSKNQCDARTYRYVIPSYAFALEDQSL----------- 172
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHE-KPRNFTICRVNLLLQRLEGKLLSYKTFAR 137
+G++ + E I+ L I D + + P ++ R+N +L+ EG F
Sbjct: 173 -LKLGEEVDED-ERIKQLSIIDGKPYTDYRLSPE--SLDRLNSILKLFEGS----HNFHN 224
Query: 138 DTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL----RKMVRV 193
T + + P +I TE + +ND ++ +E+ F+ RKMV +
Sbjct: 225 FTSKVKPLDPRARRYIISFCCTETFV---LND----IELAVLEIKGQSFMLHQIRKMVAI 277
Query: 194 LVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
++A + R + D K MD + P AP GLCL V Y N+
Sbjct: 278 VIA-IARNMISKETIDEAFKTMD----KMDLPLAPSLGLCLCHVHYDNY 321
>gi|229153920|ref|ZP_04282050.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342]
gi|228629601|gb|EEK86298.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|423348242|ref|ZP_17325926.1| tRNA pseudouridine synthase A [Parabacteroides merdae CL03T12C32]
gi|409214344|gb|EKN07354.1| tRNA pseudouridine synthase A [Parabacteroides merdae CL03T12C32]
Length = 291
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 165 CPVNDHGEGRK--VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA 222
C + G R+ V + A+RFLR MVR +V TL+ D ++++A R
Sbjct: 204 CRIYKAGWEREGDVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGR 263
Query: 223 TAPPAPPEGLCLVDVGY 239
AP L LVDV Y
Sbjct: 264 AGTSAPGHALYLVDVTY 280
>gi|423357567|ref|ZP_17335162.1| tRNA pseudouridine synthase A 1 [Bacillus cereus IS075]
gi|423376266|ref|ZP_17353580.1| tRNA pseudouridine synthase A 1 [Bacillus cereus AND1407]
gi|423572574|ref|ZP_17548753.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A12]
gi|401074433|gb|EJP82833.1| tRNA pseudouridine synthase A 1 [Bacillus cereus IS075]
gi|401088723|gb|EJP96905.1| tRNA pseudouridine synthase A 1 [Bacillus cereus AND1407]
gi|401195972|gb|EJR02920.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A12]
Length = 247
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena
thermophila]
gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila
SB210]
Length = 484
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 8 RKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPL 57
RK + I +A+NS P IR +S+ QVSR F K+R Y Y+ PL
Sbjct: 229 RKHIDIDKIINALNSNLPADIRCVSIKQVSRKFDIRTHCKYRVYEYLMPL 278
>gi|423473167|ref|ZP_17449909.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-2]
gi|402426665|gb|EJV58786.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-2]
Length = 247
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|240948735|ref|ZP_04753107.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305]
gi|240296951|gb|EER47529.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305]
Length = 262
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L++ R AP A EGL LVD
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|440510066|ref|YP_007347502.1| tRNA pseudouridine synthase A [Candidatus Blochmannia chromaiodes
str. 640]
gi|440454279|gb|AGC03771.1| tRNA pseudouridine synthase A [Candidatus Blochmannia chromaiodes
str. 640]
Length = 261
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 174 RKVMCV--ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
RK C+ ++ AN F+ +MVR +V +LV+ E + +L++ R AP G
Sbjct: 177 RKGQCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPETWIAELLENCNRSLAGVTAPASG 236
Query: 232 LCLVDVGY-TNFDPQNSLI 249
L LV+V Y ++F +S I
Sbjct: 237 LYLVEVKYPSDFSIPSSFI 255
>gi|163790163|ref|ZP_02184597.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
gi|159874654|gb|EDP68724.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
Length = 279
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ N FL MVR+ V TL++ A D + +L+ R P A P+GL L++
Sbjct: 187 LIFTFSGNGFLYNMVRIFVGTLLQIANGLRPADEIKRLLAVKDRNEAGPTAKPQGLYLME 246
Query: 237 VGY 239
V Y
Sbjct: 247 VYY 249
>gi|331000940|ref|ZP_08324577.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT
11859]
gi|329569899|gb|EGG51656.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT
11859]
Length = 259
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + + + A+ FL MVR +V LV D + ++++A R+A AP P GL L
Sbjct: 179 RFIKIRVKADAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238
Query: 235 VDVGYTNFD--PQNSLIP 250
VGY PQ+ P
Sbjct: 239 TGVGYPEIFGLPQHGASP 256
>gi|228983397|ref|ZP_04143610.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228776387|gb|EEM24740.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 252
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 188 LIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 247
Query: 237 VGYTN 241
V Y N
Sbjct: 248 VNYNN 252
>gi|222093912|ref|YP_002527962.1| tRNA pseudouridine synthase A [Bacillus cereus Q1]
gi|423578006|ref|ZP_17554125.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-D12]
gi|423608033|ref|ZP_17583926.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD102]
gi|221237960|gb|ACM10670.1| tRNA pseudouridine synthase A [Bacillus cereus Q1]
gi|401203586|gb|EJR10422.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-D12]
gi|401238716|gb|EJR45149.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD102]
Length = 247
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|423341949|ref|ZP_17319664.1| tRNA pseudouridine synthase A [Parabacteroides johnsonii
CL02T12C29]
gi|409219356|gb|EKN12318.1| tRNA pseudouridine synthase A [Parabacteroides johnsonii
CL02T12C29]
Length = 286
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V + A+RFLR MVR +V TL+ D ++++A R AP L LV
Sbjct: 217 VWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYLV 276
Query: 236 DVGY 239
DV Y
Sbjct: 277 DVTY 280
>gi|257464802|ref|ZP_05629173.1| tRNA pseudouridine synthase A [Actinobacillus minor 202]
gi|257450462|gb|EEV24505.1| tRNA pseudouridine synthase A [Actinobacillus minor 202]
Length = 262
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L++ R AP A EGL LVD
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|423718408|ref|ZP_17692590.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|383365218|gb|EID42519.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
Length = 248
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL MVR++V T++ D++ + A RR APP+GL L V Y
Sbjct: 188 FIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYLWKVYYD 247
Query: 241 N 241
N
Sbjct: 248 N 248
>gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM
17241]
gi|167667144|gb|EDS11274.1| tRNA pseudouridine synthase A [Anaerotruncus colihominis DSM 17241]
Length = 246
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDA-LLKLMDATCRRATAP 225
V HG+ + + N FL MVR++V TL+ EAA G A +L +++ R A P
Sbjct: 175 VTRHGD---FVIYSVTGNGFLYNMVRIMVGTLL-EAARGVYTPADVLHMLEGRDRSAAGP 230
Query: 226 PAPPEGLCLVDVGYTN 241
APP GL L V Y +
Sbjct: 231 TAPPHGLYLDAVFYDD 246
>gi|423480286|ref|ZP_17456976.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-2]
gi|401149291|gb|EJQ56766.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-2]
Length = 247
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQCAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|258647412|ref|ZP_05734881.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259]
gi|260852780|gb|EEX72649.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259]
Length = 256
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ A+RFLR MVR +V TL+ + K++ R A A P E L LV++ Y
Sbjct: 182 EITADRFLRNMVRAIVGTLIEVGRGRMSIEEFSKVIQQKNRCAAAESVPGEALFLVNIKY 241
>gi|257870548|ref|ZP_05650201.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2]
gi|357049064|ref|ZP_09110293.1| tRNA pseudouridine synthase A [Enterococcus saccharolyticus 30_1]
gi|257804712|gb|EEV33534.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2]
gi|355384364|gb|EHG31432.1| tRNA pseudouridine synthase A [Enterococcus saccharolyticus 30_1]
Length = 247
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R++V TL++ D++ ++ R A P A PEGL LV V Y
Sbjct: 193 FLYKMIRIMVGTLLKIGNGRLPADSIPAIIAQKDRNAAGPTAHPEGLYLVRVAY 246
>gi|167759245|ref|ZP_02431372.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704]
gi|167663119|gb|EDS07249.1| tRNA pseudouridine synthase A [Clostridium scindens ATCC 35704]
Length = 248
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++ TL+R + + ++++A R APPEGL LV
Sbjct: 183 ITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARERTQAGVTAPPEGLTLVC 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IEY 245
>gi|375136953|ref|YP_004997603.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus PHEA-2]
gi|325124398|gb|ADY83921.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus PHEA-2]
Length = 265
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 165 CPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA 224
C + +HG + + +++ A+ FL MVR +V L+ + D + + A R+A
Sbjct: 174 CRLFEHG---RYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAG 230
Query: 225 PPAPPEGLCLVDVGYT-NFD-PQNSLIP 250
APP+GL + Y+ FD PQ L P
Sbjct: 231 VTAPPDGLYFIQCNYSEQFDLPQPPLGP 258
>gi|261868098|ref|YP_003256020.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|416104133|ref|ZP_11589746.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345561|ref|ZP_21153574.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261413430|gb|ACX82801.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348007492|gb|EGY47798.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443542770|gb|ELT53071.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 261
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ + + L++ R AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWMKWLLEQKDRTLAAPTAKPEGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
V+V Y P N +P
Sbjct: 239 VNVIY----PDNFNLP 250
>gi|336422160|ref|ZP_08602312.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
gi|336009070|gb|EGN39068.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
Length = 248
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++ TL+R + + ++++A R APPEGL LV
Sbjct: 183 ITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARERTQAGVTAPPEGLTLVC 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IEY 245
>gi|297789719|ref|XP_002862797.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp.
lyrata]
gi|297308524|gb|EFH39055.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp.
lyrata]
Length = 244
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA----TAPPAPPEG 231
++ +E+ + FL + VR +VA L+ D D + +++ RR T P PP G
Sbjct: 147 LLQLEVEGSGFLYRQVRNMVALLIHIGKESLDSDIVPMILETKDRRVLAKYTTLPVPPHG 206
Query: 232 LCLVDVGY 239
LCLV V Y
Sbjct: 207 LCLVSVKY 214
>gi|154494877|ref|ZP_02033882.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC
43184]
gi|154085427|gb|EDN84472.1| tRNA pseudouridine synthase A [Parabacteroides merdae ATCC 43184]
Length = 297
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 165 CPVNDHGEGRK--VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA 222
C + G R+ V + A+RFLR MVR +V TL+ D ++++A R
Sbjct: 210 CRIYKAGWEREGDVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGR 269
Query: 223 TAPPAPPEGLCLVDVGY 239
AP L LVDV Y
Sbjct: 270 AGTSAPGHALYLVDVTY 286
>gi|423370724|ref|ZP_17348129.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD142]
gi|401073460|gb|EJP81882.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD142]
Length = 247
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSVGQGRLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|422348331|ref|ZP_16429224.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404659413|gb|EKB32264.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 268
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V + AN FL+ MVR +V TL+ + + +++ A R A AP P GL L+ VG
Sbjct: 183 VRIEANAFLQHMVRNIVGTLIYVGTGREKPEWVEEVLKARSRAAAAPTFSPNGLYLMGVG 242
Query: 239 YTN 241
Y +
Sbjct: 243 YED 245
>gi|47570254|ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
Length = 247
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L
Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>gi|415768558|ref|ZP_11483821.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348657891|gb|EGY75471.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 272
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ + + L++ R AP A PEGL L
Sbjct: 190 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWMKWLLEQKDRTLAAPTAKPEGLYL 249
Query: 235 VDVGYTNFDPQNSLIP 250
V+V Y P N +P
Sbjct: 250 VNVIY----PDNFNLP 261
>gi|315634336|ref|ZP_07889623.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393]
gi|315476926|gb|EFU67671.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393]
Length = 261
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ + L L+ R AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWLAWLLGQQDRTLAAPTAKPEGLYL 238
Query: 235 VDVGY 239
V+V Y
Sbjct: 239 VNVLY 243
>gi|160935852|ref|ZP_02083227.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC
BAA-613]
gi|158441596|gb|EDP19306.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC
BAA-613]
Length = 248
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+ N FL++MVR+L TL+ + + +++A R APPEGL L V
Sbjct: 184 ISFTGNGFLQQMVRILSGTLIEVGTGKRKPEEMAAILEAGDRSMAGFTAPPEGLFLEKVE 243
Query: 239 YTNF 242
Y +
Sbjct: 244 YGDL 247
>gi|71892269|ref|YP_278003.1| tRNA pseudouridine synthase A [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123775274|sp|Q492H3.1|TRUA_BLOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71796375|gb|AAZ41126.1| tRNA pseudouridine synthase A [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 261
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 174 RKVMCV--ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
RK C+ ++ AN F+ +MVR +V +LV+ E + +L++ R AP G
Sbjct: 177 RKGQCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPEKWIAELLENCNRSLAGVTAPASG 236
Query: 232 LCLVDVGY-TNFDPQNSLI 249
L LV+V Y ++F +S I
Sbjct: 237 LYLVEVKYPSDFSIPSSFI 255
>gi|284035717|ref|YP_003385647.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74]
gi|283815010|gb|ADB36848.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74]
Length = 252
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + ANRFL MVR +V T++ + K++ A R+ AP GL LV+
Sbjct: 181 LTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANGLYLVE 240
Query: 237 VGY 239
VGY
Sbjct: 241 VGY 243
>gi|167746683|ref|ZP_02418810.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662]
gi|167653643|gb|EDR97772.1| tRNA pseudouridine synthase A [Anaerostipes caccae DSM 14662]
Length = 249
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
+H E R + + FL MVR+L TL A D +++ + + R+ AP
Sbjct: 183 EHSEIR----LSFTGDGFLYNMVRILTGTLAEIGAGTRDPESIFHVFQSKDRKDAGITAP 238
Query: 229 PEGLCLVDVGY 239
P GL L++V Y
Sbjct: 239 PHGLFLMNVEY 249
>gi|167624561|ref|YP_001674855.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|189030143|sp|B0TKZ4.1|TRUA_SHEHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|167354583|gb|ABZ77196.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4]
Length = 261
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ + + +L+ R A A P GL LVD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLLEVGLGNQPIEWIEQLLALKDRNKAAATAKPNGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PESYQLP 250
>gi|336233687|ref|YP_004586303.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
gi|335360542|gb|AEH46222.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
Length = 248
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL MVR++V T++ D++ + A RR APP+GL L V Y
Sbjct: 188 FIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYLWKVYYD 247
Query: 241 N 241
N
Sbjct: 248 N 248
>gi|148243240|ref|YP_001228397.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307]
gi|147851550|emb|CAK29044.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307]
Length = 291
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL MVR+LV LV + + R APP+GLCL+
Sbjct: 191 ILTLEIQASGFLYGMVRLLVGQLVAAGEGRISPEQFRQRWREQRRDEVKEAAPPQGLCLL 250
Query: 236 DVGY 239
VGY
Sbjct: 251 RVGY 254
>gi|66811154|ref|XP_639285.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4]
gi|60467961|gb|EAL65974.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4]
Length = 343
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G + +E+ A FL VR++VA+L++ L ++ D R A P A PE L
Sbjct: 236 GLQYFGIEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPL 295
Query: 233 CLVDVGYTNFDPQ 245
L+ V Y DP+
Sbjct: 296 TLLTVSYD--DPK 306
>gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
Length = 244
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ + PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKSGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|386389651|ref|ZP_10074465.1| tRNA pseudouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
gi|385695421|gb|EIG25983.1| tRNA pseudouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
Length = 261
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L++ R AP A EGL LVD
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLIEVGKGTQPIEWIKWLLEQKDRSLAAPTAKAEGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ IP
Sbjct: 241 VHY----PEHFGIP 250
>gi|260438877|ref|ZP_05792693.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
gi|292808716|gb|EFF67921.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
Length = 249
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 84/235 (35%), Gaps = 64/235 (27%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQS 66
D+ I D +N P I V+ V + + FH + A + Y Y PL +R+
Sbjct: 73 DMSTDAIRDYMNRYLPDDICVLEVKEAAERFHSRYKAVGKTYCYTCYTGPLKPVFDRKY- 131
Query: 67 IDSEVEVENFHTSNNVGKQSNGCYENIENLLI--NDEGGFGSHEKPRNFTICRVNLLLQR 124
V + ++GK E LLI +D F S+ K + T+ V+ +
Sbjct: 132 ------VYYIEETPDIGKM-----EEAAKLLIGIHDYASFCSNPKMKKSTVREVDSIQII 180
Query: 125 LEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVAN 184
+G+ + F YH G G
Sbjct: 181 KKGQYIR--------------------FTYH---------------GTG----------- 194
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL+ MVR+L TL+ D ++ +L +A R AP GLC++ V Y
Sbjct: 195 -FLQHMVRILTGTLLEVGFGKRDVSSIPELFEAKDRSLAGFTAPASGLCMMQVDY 248
>gi|423725249|ref|ZP_17699389.1| tRNA pseudouridine synthase A [Parabacteroides merdae CL09T00C40]
gi|409234877|gb|EKN27701.1| tRNA pseudouridine synthase A [Parabacteroides merdae CL09T00C40]
Length = 291
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 165 CPVNDHGEGRK--VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA 222
C + G R+ V + A+RFLR MVR +V TL+ D ++++A R
Sbjct: 204 CRIYKAGWEREGDVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGR 263
Query: 223 TAPPAPPEGLCLVDVGY 239
AP L LVDV Y
Sbjct: 264 AGTSAPGHALYLVDVTY 280
>gi|119383286|ref|YP_914342.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222]
gi|166228744|sp|A1AZF2.1|TRUA_PARDP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119373053|gb|ABL68646.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222]
Length = 261
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 65/239 (27%)
Query: 9 KDVKPSDIEDAIN-SAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF-----PLNDGEN 62
+D P + +A+N P + +++ ++V+ FH FSA RRYL+ PL
Sbjct: 71 RDWDPFRLSEALNWHLKPAPVAILAAARVADDFHARFSAHERRYLFRLVARRAPLTHDRG 130
Query: 63 REQSIDSEVEVENFHT--SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNL 120
R + +++ ++ +G+ + + T+C+ N
Sbjct: 131 RAWQVPHRLDLAAMRAGAAHLLGRHDFTTFRS---------------------TMCQANS 169
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
++ L+ + EA +P +GR+
Sbjct: 170 PVKTLDELTID----------------------------EAEIP-------QGREYRFF- 193
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A + + + A R A P PP+GL L VGY
Sbjct: 194 LRARSFLHNQVRSIVGTLERVGAGAWPPGRVAEALAACDRAACGPVCPPQGLYLTGVGY 252
>gi|343520539|ref|ZP_08757508.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397497|gb|EGV10031.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 247
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
F+R VR++V TLV +ED L K++D+ R P GL L+++ Y F
Sbjct: 191 FIRNQVRIMVGTLVDIGRGLIEEDELEKILDSEDRTRAGITLSPNGLYLMEILYDKF 247
>gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
Length = 249
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E N FL MVR++V TL+ D LM R P APP+GL L
Sbjct: 181 IIEFEFTGNGFLYNMVRIIVGTLIELGKKSTRYDIQRALMTGD-RGFAGPTAPPQGLFLK 239
Query: 236 DVGYTNFD 243
V Y N D
Sbjct: 240 KVSY-NLD 246
>gi|444335305|ref|YP_007391674.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299684|gb|AGD97921.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 247
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 115 ICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR 174
I R+NL Q L K + +F + K +N C IYHA D +
Sbjct: 133 IQRMNLASQILM-KYKDFSSFCKKRKDKKN----NICDIYHA------------DWSRNK 175
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC-RRATAPPAPPEGLC 233
C + ANRFLR MVR ++ TL+ + +++++ ++P P GL
Sbjct: 176 IHFCFTIEANRFLRNMVRSIIGTLIDVGRGKISINQFIEIIELKDPNTFSSPSVPACGLF 235
Query: 234 LVDVGY 239
L + Y
Sbjct: 236 LTKILY 241
>gi|77358715|ref|YP_338281.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493]
gi|153206765|ref|ZP_01945606.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|154705837|ref|YP_001424337.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|161830159|ref|YP_001596814.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331]
gi|165918506|ref|ZP_02218592.1| tRNA pseudouridine synthase A [Coxiella burnetii Q321]
gi|212212657|ref|YP_002303593.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212218370|ref|YP_002305157.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154]
gi|226708643|sp|B6J6W3.1|TRUA_COXB1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708644|sp|B6J0H0.1|TRUA_COXB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708645|sp|A9KFZ5.1|TRUA_COXBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708646|sp|A9ND24.1|TRUA_COXBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71066705|gb|AAZ22627.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493]
gi|120577128|gb|EAX33752.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|154355123|gb|ABS76585.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|161762026|gb|ABX77668.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331]
gi|165917752|gb|EDR36356.1| tRNA pseudouridine synthase A [Coxiella burnetii Q321]
gi|212011067|gb|ACJ18448.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212012632|gb|ACJ20012.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154]
Length = 261
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +E+ AN FL MVR + L+ + D ++ A RR PP GL
Sbjct: 179 RRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPPNGLY 238
Query: 234 LVDVGYTNFDPQNSLIP 250
LV+V Y P N +P
Sbjct: 239 LVEVNY----PPNFKLP 251
>gi|335430292|ref|ZP_08557187.1| tRNA pseudouridine synthase A [Haloplasma contractile SSD-17B]
gi|334888708|gb|EGM27005.1| tRNA pseudouridine synthase A [Haloplasma contractile SSD-17B]
Length = 253
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG +++ + L A+ FL MVR++V TL+ ++D + + + R AP EG
Sbjct: 183 EGDQIL-IYLTADGFLYNMVRIIVGTLIEIGLGDRNKDTIKHIFETESREQAGFTAPAEG 241
Query: 232 LCL 234
L L
Sbjct: 242 LVL 244
>gi|336251380|ref|YP_004595090.1| tRNA pseudouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334737436|gb|AEG99811.1| tRNA pseudouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 270
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---AYVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD 243
A A EGL LV V Y +FD
Sbjct: 235 LAAATAKAEGLYLVSVDYPAHFD 257
>gi|345862115|ref|ZP_08814350.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344324730|gb|EGW36273.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 245
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ N FL MVR++V TL+ + K++D R P A +GL L D
Sbjct: 183 LAIEVNGNGFLWNMVRIIVGTLIEVGKGNLKPVDVEKILDKKKRWEAGPLAQAKGLYLKD 242
Query: 237 VGY 239
V Y
Sbjct: 243 VQY 245
>gi|261879379|ref|ZP_06005806.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361]
gi|270333946|gb|EFA44732.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361]
Length = 244
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ ANRFLR MVR +V TL+ ++++ R PP GL L D+ Y
Sbjct: 183 EISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLFLWDIEY 242
>gi|254412106|ref|ZP_05025881.1| tRNA pseudouridine synthase A [Coleofasciculus chthonoplastes PCC
7420]
gi|196181072|gb|EDX76061.1| tRNA pseudouridine synthase A [Coleofasciculus chthonoplastes PCC
7420]
Length = 283
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV + +L R AP +GLCL+ VG
Sbjct: 193 IEIQADGFLYGMVRLLVGMLVEVGRGNLNPHEFTQLWVNQQRERIKYSAPAKGLCLLRVG 252
Query: 239 YTN--------FDPQNSLI 249
Y N FD Q I
Sbjct: 253 YPNSPFPPKTWFDTQPKFI 271
>gi|423073078|ref|ZP_17061821.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
gi|361855908|gb|EHL07842.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
Length = 271
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 84/236 (35%), Gaps = 60/236 (25%)
Query: 14 SDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSE 70
+ I A NS P IR+++ + + FH FSAKW+RY Y P+ D R S+
Sbjct: 78 AKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPVADVFTRLYSL--- 134
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
HE V L QR++ +
Sbjct: 135 ------------------------------------HEP--------VRLDWQRMQ-QGA 149
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
Y + KA G ++ F + C V ++ ++ C + + FL M
Sbjct: 150 QYLVGRHNFKAFSAAGGTSKTF------ERTLYLCQVAENQGHLRITC---IGDGFLYNM 200
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
VR++ TLV + ++ + R+ A P+GL L V Y P++
Sbjct: 201 VRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTLSYVHYGEELPRD 256
>gi|148379875|ref|YP_001254416.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
3502]
gi|153930931|ref|YP_001384172.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|153935153|ref|YP_001387713.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
gi|148289359|emb|CAL83455.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC
3502]
gi|152926975|gb|ABS32475.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|152931067|gb|ABS36566.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
Length = 246
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + ++DA RR P AP +GL + V Y
Sbjct: 192 FLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGLFMTSVDY 245
>gi|254441675|ref|ZP_05055168.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307]
gi|198251753|gb|EDY76068.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307]
Length = 256
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 76/217 (35%), Gaps = 53/217 (24%)
Query: 25 PGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGK 84
P + +++ QV+ +H FSA RRYL+ NR + E + + S +
Sbjct: 85 PAPVSIVACVQVADDWHARFSALERRYLFRL-----VNRRAPLVLEAG-KVWQVSQKL-- 136
Query: 85 QSNGCYENIENLLINDEGGFGSHEKPRNF--TICRVNLLLQRLEGKLLSYKTFARDTKAS 142
+ LL H F T+C+ + ++ L+G L + AR A
Sbjct: 137 DGAAMQAGADRLL--------GHHDFTTFRSTVCQADSPMRTLDG--LDIEQVARSDGAQ 186
Query: 143 RNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREA 202
F +H RA FL VR V TL R
Sbjct: 187 E--------FRFHVRARS-------------------------FLHNQVRSFVGTLERVG 213
Query: 203 AAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A D + ++A R A P PP GL L VGY
Sbjct: 214 AGAWTRDDVSAALNARDRTACGPVCPPHGLYLASVGY 250
>gi|373455492|ref|ZP_09547324.1| tRNA pseudouridine synthase A [Dialister succinatiphilus YIT 11850]
gi|371934851|gb|EHO62628.1| tRNA pseudouridine synthase A [Dialister succinatiphilus YIT 11850]
Length = 244
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++ + FL+ M+R++ TLV + + +++A R APP+GL LVD
Sbjct: 182 LIIDYRGSGFLQNMIRIITGTLVEIGEGKKKAEQMPAILEAKDRSEAGFTAPPQGLVLVD 241
Query: 237 VGY 239
V Y
Sbjct: 242 VVY 244
>gi|218262724|ref|ZP_03477082.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii
DSM 18315]
gi|218223213|gb|EEC95863.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii
DSM 18315]
Length = 292
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V + A+RFLR MVR +V TL+ D ++++A R AP L LV
Sbjct: 223 VWFFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYLV 282
Query: 236 DVGY 239
DV Y
Sbjct: 283 DVTY 286
>gi|419759835|ref|ZP_14286120.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
gi|407514874|gb|EKF49660.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
Length = 244
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FLR MVR +V +LVR + +L++++ R+ A APP GL L
Sbjct: 181 LILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAGTAPPHGLYLY 240
Query: 236 DV 237
V
Sbjct: 241 KV 242
>gi|307244438|ref|ZP_07526548.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM
17678]
gi|306492195|gb|EFM64238.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM
17678]
Length = 253
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ N FL MVR++ T+V + G ++L ++ + R APP+GL LV
Sbjct: 184 LIVIEVEGNGFLYNMVRIIAGTMV-DIGRGKITESLRDIIGSGVRARAGHTAPPQGLFLV 242
Query: 236 DVGY 239
V Y
Sbjct: 243 GVDY 246
>gi|443478466|ref|ZP_21068216.1| tRNA pseudouridine synthase A [Pseudanabaena biceps PCC 7429]
gi|443016238|gb|ELS30944.1| tRNA pseudouridine synthase A [Pseudanabaena biceps PCC 7429]
Length = 279
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+ A+ FL M+R+LV LV + ++ + R APP+GLCL+ +G
Sbjct: 193 VEVQASGFLYGMIRLLVGQLVDVGRSSLTIESFTNIWKEKRRIEVKYAAPPQGLCLLAIG 252
Query: 239 YTN 241
Y +
Sbjct: 253 YAD 255
>gi|348028869|ref|YP_004871555.1| tRNA pseudouridine synthase A [Glaciecola nitratireducens FR1064]
gi|347946212|gb|AEP29562.1| tRNA pseudouridine synthase A [Glaciecola nitratireducens FR1064]
Length = 259
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ VE+ AN FL MVR +V +LVR + ++A R+ A P GL LV+
Sbjct: 181 VIVEVAANAFLHHMVRNIVGSLVRVGTLEESVSWMKDTLEAKDRKVAGTTARPNGLYLVN 240
Query: 237 VGY-TNFD-PQNSLIP 250
V Y FD P +S P
Sbjct: 241 VIYPQEFDMPTSSFGP 256
>gi|444350297|ref|YP_007386441.1| tRNA pseudouridine synthase A (EC 4.2.1.70) [Enterobacter aerogenes
EA1509E]
gi|443901127|emb|CCG28901.1| tRNA pseudouridine synthase A (EC 4.2.1.70) [Enterobacter aerogenes
EA1509E]
Length = 270
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---AYVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD 243
A A EGL LV V Y +FD
Sbjct: 235 LAAATAKAEGLYLVSVDYPAHFD 257
>gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase ACD [Thermosipho africanus TCF52B]
gi|226708660|sp|B7IHS2.1|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B]
Length = 244
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FLR MVR +V +LVR + +L++++ R+ A APP GL L
Sbjct: 181 LILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAGTAPPHGLYLY 240
Query: 236 DV 237
V
Sbjct: 241 KV 242
>gi|355681879|ref|ZP_09062167.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
gi|354811290|gb|EHE95923.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
Length = 247
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + N FL MVR++ TL+ + ++++A RR P AP GL L+
Sbjct: 182 MITIRVTGNGFLYNMVRIIAGTLIAVGMGQIHPGEMEQILEARERRRAGPTAPARGLTLI 241
Query: 236 DVGYTN 241
++ Y +
Sbjct: 242 EMKYVD 247
>gi|323703112|ref|ZP_08114766.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|333923190|ref|YP_004496770.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323531889|gb|EGB21774.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|333748751|gb|AEF93858.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 245
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + N FL MVR++V TLV + + +++ R A P AP +GL L+
Sbjct: 182 LIKITVHGNGFLHNMVRIIVGTLVEVGLGHMRPEQVKEILSKKDRSAAGPTAPAKGLYLL 241
Query: 236 DVGY 239
+V Y
Sbjct: 242 EVEY 245
>gi|313888069|ref|ZP_07821747.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846024|gb|EFR33407.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 244
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + VA FL+ M+R++ T++ + + + + ++ R+A P AP GL L+D
Sbjct: 182 LYFDFVAKSFLKNMIRIVTGTVLEIGRGQREIEYMKEALEKKSRKAAGPTAPACGLYLLD 241
Query: 237 VGY 239
V Y
Sbjct: 242 VKY 244
>gi|422347433|ref|ZP_16428345.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|422875317|ref|ZP_16921802.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|373224731|gb|EHP47068.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|380303847|gb|EIA16143.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 244
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKAEYIKEVIDSGDRKKAGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
Length = 263
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++V TL+R + + +++A R+A APP GL L+
Sbjct: 182 ITIRIRGNGFLYNMVRIIVGTLLRVGRGFYTPEQVKDILEAKDRQAAGVTAPPHGLRLIG 241
Query: 237 VGY 239
+ Y
Sbjct: 242 IEY 244
>gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51]
gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 271
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 60/234 (25%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSEVE 72
I A NS P IR+++ + + FH FSAKW+RY Y P+ D R S+
Sbjct: 80 IPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPVADVFTRLYSL----- 134
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
HE V L QR++ + Y
Sbjct: 135 ----------------------------------HEP--------VRLDWQRMQ-QGAQY 151
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
+ KA G ++ F + C V ++ ++ C + + FL MVR
Sbjct: 152 LVGRHNFKAFSAAGGTSKTF------ERTLYLCQVAENQGHLRITC---IGDGFLYNMVR 202
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
++ TLV + ++ + R+ A P+GL L V Y P++
Sbjct: 203 IIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTLSYVHYGEELPRD 256
>gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
Length = 244
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ + + FL MVR++V TL++ + + ++++A R A P AP +GL L
Sbjct: 180 RLVIFRIEGDGFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDRLAAGPTAPAQGLRL 239
Query: 235 VDVGY 239
+ V Y
Sbjct: 240 IKVKY 244
>gi|126462985|ref|YP_001044099.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
gi|166228755|sp|A3PLW1.1|TRUA_RHOS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|126104649|gb|ABN77327.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
Length = 255
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + ++A R A P PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALEAHDRAACGPVCPPQGLYLTGVGY 249
>gi|254424035|ref|ZP_05037753.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335]
gi|196191524|gb|EDX86488.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335]
Length = 299
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+EL A FL MVR+++ +V+ + R APP+GLCL+ VG
Sbjct: 211 IELQAKGFLYGMVRLIMGLIVQVGERRLSPKEFTAIWQKRRRDLVKYSAPPQGLCLLRVG 270
Query: 239 YTNF 242
Y+ F
Sbjct: 271 YSTF 274
>gi|372209315|ref|ZP_09497117.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium S85]
Length = 250
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + A+RFLR MVR +V TL D + +++++++ R P GL L +
Sbjct: 179 LIFHISADRFLRNMVRAVVGTLCEVGKEKIDPEKIIEIIESKNRSNAGASVPAHGLFLTE 238
Query: 237 VGY 239
V Y
Sbjct: 239 VTY 241
>gi|300088167|ref|YP_003758689.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527900|gb|ADJ26368.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 261
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
IL + GE + +VA FL MVR +V LV+ KL+ A
Sbjct: 176 ILAAGLTSEGE---ELVFRIVAKSFLPHMVRNIVGVLVKIGTGRLTVAEFEKLLSAAVPG 232
Query: 222 ATAPPAPPEGLCLVDVGYTN 241
+ P AP +GLCL+ V Y
Sbjct: 233 SAGPAAPGKGLCLIKVNYAK 252
>gi|83943967|ref|ZP_00956424.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36]
gi|83954540|ref|ZP_00963251.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1]
gi|83840824|gb|EAP79995.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1]
gi|83845214|gb|EAP83094.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36]
Length = 262
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
A FL VR +V TL R A D + +++ A R+A P APP+GL L V Y
Sbjct: 193 ARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPPQGLYLSHVTYET- 251
Query: 243 DP--QNSL 248
DP Q+SL
Sbjct: 252 DPFAQSSL 259
>gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
Length = 271
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 60/234 (25%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSEVE 72
I A NS P IR+++ + + FH FSAKW+RY Y P+ D R S+
Sbjct: 80 IPKAFNSLLPRDIRILAAQEAAEDFHARFSAKWKRYDYRIDNHPVADVFTRLYSL----- 134
Query: 73 VENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSY 132
HE V L QR++ + Y
Sbjct: 135 ----------------------------------HEP--------VRLDWQRMQ-QGAQY 151
Query: 133 KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVR 192
+ KA G ++ F + C V ++ ++ C + + FL MVR
Sbjct: 152 LVGRHNFKAFSAAGGTSKTF------ERTLYLCQVAENQGHLRITC---IGDGFLYNMVR 202
Query: 193 VLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
++ TLV + ++ + R+ A P+GL L V Y P++
Sbjct: 203 IIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTLSYVHYGEELPRD 256
>gi|427726117|ref|YP_007073394.1| tRNA pseudouridine synthase A [Leptolyngbya sp. PCC 7376]
gi|427357837|gb|AFY40560.1| tRNA pseudouridine synthase A [Leptolyngbya sp. PCC 7376]
Length = 274
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP-PAPPEGLCLVDV 237
+E+ AN FL MVR+LV LV + G K++ +T RR AP +GLCL+ V
Sbjct: 193 IEIQANGFLYGMVRLLVGLLV-DVGQGKRSLEDFKMIWSTERRDLVKYSAPAKGLCLLRV 251
Query: 238 GY 239
GY
Sbjct: 252 GY 253
>gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|384049237|ref|YP_005497254.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|345446928|gb|AEN91945.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
Length = 246
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
D E + V + FL MVR+LV TL+ + DA+ ++++ R AP
Sbjct: 174 DMYEENSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPDAIKDILESKSRPRAGKTAP 233
Query: 229 PEGLCLVDVGYTN 241
+GL L V Y N
Sbjct: 234 SQGLYLWRVFYDN 246
>gi|414153603|ref|ZP_11409926.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455001|emb|CCO07830.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 250
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 84/232 (36%), Gaps = 54/232 (23%)
Query: 8 RKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSI 67
R V I A+N+ P I+V+ +V FH FSA + Y Y SI
Sbjct: 73 RWPVPTEKIHLAMNALLPDDIKVLQAEEVPLDFHARFSATAKTYRY------------SI 120
Query: 68 DSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEG 127
+ + H CY HE PR LL R
Sbjct: 121 YNHRVMSPLHRLY--------CY----------------HE-PR--------LLDVRAMQ 147
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFL 187
+ +Y + D K+ + G P + + E + P+ + + L N FL
Sbjct: 148 EGAAYLVGSHDFKSFQAQGTPVKDTVRTIYRAEILSEPPL---------IHLYLRGNGFL 198
Query: 188 RKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR++ TL+ A+ +++ A R PP+GLCL++V Y
Sbjct: 199 YNMVRIITGTLLDIGMGKIPPSAMAQIIAARDRTLAGTTVPPQGLCLMEVEY 250
>gi|220930998|ref|YP_002507906.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|220931093|ref|YP_002508001.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|219992308|gb|ACL68911.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|219992403|gb|ACL69006.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
Length = 246
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ N FL KMVR++ TL+ ++ +L++ R APP GL L++V
Sbjct: 186 IEVCGNGFLYKMVRIIAGTLIEVGLGKRTVKSVGQLLEIKDRDRAGFTAPPRGLTLIEVF 245
Query: 239 Y 239
Y
Sbjct: 246 Y 246
>gi|418464326|ref|ZP_13035266.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359757122|gb|EHK91278.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 261
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ + + L++ R AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWIKWLLEQKDRTLAAPTAKPEGLYL 238
Query: 235 VDVGY 239
V+V Y
Sbjct: 239 VNVIY 243
>gi|420155408|ref|ZP_14662270.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
gi|394759186|gb|EJF41965.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
Length = 251
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ AN FL MVR++ TL+R A + + + ++++ R P APP GL L V Y
Sbjct: 187 VAANGFLYHMVRIMAGTLLRVAQGKFEPEQIPQILEQRNRHIAGPTAPPGGLYLNRVFY 245
>gi|428301913|ref|YP_007140219.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 6303]
gi|428238457|gb|AFZ04247.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 6303]
Length = 274
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDA-LLKLMDATCRRATAPPAPPEGLCLVDV 237
+E+ A+ FL MVR+LV LV E +G+ A +L R AP GLCL+ V
Sbjct: 194 IEIQADGFLYGMVRLLVGMLV-EVGSGSRAIANFTQLWKEQRREDVRYAAPAHGLCLLRV 252
Query: 238 GYTNF 242
GY +F
Sbjct: 253 GYPDF 257
>gi|404451273|ref|ZP_11016242.1| tRNA pseudouridine synthase A [Indibacter alkaliphilus LW1]
gi|403763027|gb|EJZ24027.1| tRNA pseudouridine synthase A [Indibacter alkaliphilus LW1]
Length = 250
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + ANRFLR MVR +V TL+ + ++++ R+ AP +GL L
Sbjct: 182 LLFHITANRFLRGMVRAIVGTLMEVGLGKITVEDFRTIIESKNRKEAKSSAPAQGLYLCR 241
Query: 237 VGY 239
V Y
Sbjct: 242 VTY 244
>gi|326792573|ref|YP_004310394.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
gi|326543337|gb|ADZ85196.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
Length = 245
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 37/64 (57%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +++ N FL MVR+++ TL+ +D++ ++++ R P PP+GL ++
Sbjct: 181 LVSIDVCGNGFLYNMVRIIIGTLLDVNENKITKDSIKTIIESKNRELAGPTVPPQGLTML 240
Query: 236 DVGY 239
++ Y
Sbjct: 241 NIVY 244
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 13 PSD-IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY 53
P+D + AINS P I V SV +VS FHP F AK + Y Y
Sbjct: 71 PADRLAKAINSQLPADISVKSVEEVSEDFHPRFGAKRKTYRY 112
>gi|383814501|ref|ZP_09969921.1| tRNA pseudouridine synthase A [Serratia sp. M24T3]
gi|383296578|gb|EIC84892.1| tRNA pseudouridine synthase A [Serratia sp. M24T3]
Length = 276
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +LV A E + +L+ A R A A EGL LV
Sbjct: 196 VVVDIKANAFVHHMVRNIVGSLVEVGAGNQPESWMAELLAAKNRNLAAATAKAEGLYLVG 255
Query: 237 VGY 239
V Y
Sbjct: 256 VDY 258
>gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 243
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ AN FL MVR++ TL+ + ++ ++ + R PP+GLCL+
Sbjct: 180 IVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCLI 239
Query: 236 DVGY 239
V Y
Sbjct: 240 KVIY 243
>gi|428224260|ref|YP_007108357.1| tRNA pseudouridine synthase A [Geitlerinema sp. PCC 7407]
gi|427984161|gb|AFY65305.1| tRNA pseudouridine synthase A [Geitlerinema sp. PCC 7407]
Length = 288
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ A+ FL M+R+LV LV + L R APP+GLCL+
Sbjct: 191 IYIEVQASGFLYGMMRLLVGMLVDVGQGALSPEDFTALWQGQRRDEVKYAAPPQGLCLLR 250
Query: 237 VGY--TNFDPQN 246
VGY + F P+
Sbjct: 251 VGYPTSPFPPET 262
>gi|366163712|ref|ZP_09463467.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2]
Length = 260
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ + FL MVR++V TLV + + ++++ R+ APP+GL LV+
Sbjct: 197 IWFEVSGDGFLYNMVRIMVGTLVDVGMGRIKAEEIPGIIESCDRKRAGRTAPPQGLYLVE 256
Query: 237 VGY 239
V Y
Sbjct: 257 VYY 259
>gi|392391637|ref|YP_006428240.1| pseudouridylate synthase I [Ornithobacterium rhinotracheale DSM
15997]
gi|390522715|gb|AFL98446.1| pseudouridylate synthase I [Ornithobacterium rhinotracheale DSM
15997]
Length = 247
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+RFLR MVR +V T+V + ++++ R A AP +GL L V Y
Sbjct: 182 ICADRFLRNMVRAIVGTMVEVGKGKINITEFKQIIEKKGRNFAAASAPAQGLFLTHVAY 240
>gi|389843544|ref|YP_006345624.1| pseudouridylate synthase I [Mesotoga prima MesG1.Ag.4.2]
gi|387858290|gb|AFK06381.1| pseudouridylate synthase I [Mesotoga prima MesG1.Ag.4.2]
Length = 252
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL++MVR +V TLV+ E+++ + + + R APP+GL
Sbjct: 184 IILIRVEGISFLKRMVRNIVGTLVKVGTGSVSEESVSEFLSSHDRSTLPGTAPPQGLVFY 243
Query: 236 DVGYTNFD 243
V + F+
Sbjct: 244 KVIFDEFE 251
>gi|291520511|emb|CBK75732.1| pseudouridylate synthase I [Butyrivibrio fibrisolvens 16/4]
Length = 245
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ + L + FL MVR++ TL++ A + +L++ R P AP GL ++
Sbjct: 180 VIHIRLTGDGFLYNMVRIIAGTLIKVGAGEMEPMYMLEIFRGRNRELAGPTAPAHGLTMI 239
Query: 236 DVGY 239
+ Y
Sbjct: 240 GIEY 243
>gi|407696460|ref|YP_006821248.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
gi|407253798|gb|AFT70905.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
Length = 262
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ +E+ AN FL MVR + L+ A + +++ A RR APP GL L
Sbjct: 181 RMIILEVEANAFLMHMVRNIAGVLMAIGAGHQPVEWAAEVLAARDRREGGVTAPPYGLYL 240
Query: 235 VDVGYTN 241
VD+GY +
Sbjct: 241 VDIGYPD 247
>gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
Length = 267
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
+HG KV+ +E AN FL MVR + L+ A ++++ RR A AP
Sbjct: 178 EHG---KVLVLEAHANAFLMHMVRNIAGVLMSVGAGKRPAHWAREVLEGRDRRKGAATAP 234
Query: 229 PEGLCLVDVGYTN 241
P GL LVD+ Y +
Sbjct: 235 PFGLYLVDIEYPD 247
>gi|407473172|ref|YP_006787572.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
gi|407049680|gb|AFS77725.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
Length = 251
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
N FL MVR++VATL+ + + +LK+++ R A +GL L++V Y N
Sbjct: 189 GNGFLYNMVRIIVATLIDVGLEKSKPENVLKILEGKNRALAGDTAVAKGLYLLEVEYKN 247
>gi|387119938|ref|YP_006285821.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415763416|ref|ZP_11482104.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416044570|ref|ZP_11575061.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996133|gb|EGY37248.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348654583|gb|EGY70189.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385874430|gb|AFI85989.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 272
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 55/226 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V FH FSA RRY YI N + S +
Sbjct: 88 GVNANLPDDIAVRWAKVVEDDFHARFSATARRYRYILYCN-------KLRSAI------- 133
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 134 ---LPQGVTHCHLELDHQLMHDAGQ------------------------ALLGENDFSSF 166
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T +G+ ++ V++ AN F+ MVR +V +L
Sbjct: 167 RAAQCQSNTPWRN-VHHLNVTR-----------QGQYII-VDIQANAFVHHMVRNIVGSL 213
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY-TNFD 243
+ + + L++ R AP A PEGL LV+V Y NF+
Sbjct: 214 IEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYLVNVIYPDNFN 259
>gi|261346179|ref|ZP_05973823.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565835|gb|EFB71370.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541]
Length = 271
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ D D + +L++ R
Sbjct: 176 VMHVNVTRHG---NYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMHQLLELKDRT 232
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD-PQNSLIP 250
A A EGL LV V Y + FD PQN + P
Sbjct: 233 KAAATAKAEGLYLVSVDYPDKFDLPQNVMGP 263
>gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC
29176]
gi|197298014|gb|EDY32563.1| tRNA pseudouridine synthase A [Ruminococcus lactaris ATCC 29176]
Length = 297
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ + N FL MVR+L TL+ D + + +++A R+A PP+GL L+
Sbjct: 206 VITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTVPPQGLTLM 265
Query: 236 DVGYTN 241
+ Y +
Sbjct: 266 KIDYLD 271
>gi|416038273|ref|ZP_11574095.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429732639|ref|ZP_19267237.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995091|gb|EGY36305.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429155660|gb|EKX98322.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans Y4]
Length = 261
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 58/232 (25%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V FH FSA RRY YI N + S +
Sbjct: 77 GVNANLPDDIAVRWAKVVEDDFHARFSATARRYRYILYCN-------KLRSAI------- 122
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 123 ---LPQGVTHCHLELDHQLMHDAGQ------------------------ALLGENDFSSF 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T +G+ ++ V++ AN F+ MVR +V +L
Sbjct: 156 RAAQCQSNTPWRN-VHHLNVTR-----------QGQYII-VDIQANAFVHHMVRNIVGSL 202
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + + L++ R AP A PEGL LV+V Y P N +P
Sbjct: 203 IEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYLVNVIY----PDNFNLP 250
>gi|365967880|ref|YP_004949442.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416068830|ref|ZP_11582955.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444335062|ref|ZP_21150414.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348000738|gb|EGY41512.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|365746793|gb|AEW77698.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443549527|gb|ELT58289.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 261
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 58/232 (25%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V FH FSA RRY YI N + S +
Sbjct: 77 GVNANLPDDIAVRWAKVVEDDFHARFSATARRYRYILYCN-------KLRSAI------- 122
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 123 ---LPQGVTHCHLELDHQLMHDAGQ------------------------ALLGENDFSSF 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T +G+ ++ V++ AN F+ MVR +V +L
Sbjct: 156 RAAQCQSNTPWRN-VHHLNVTR-----------QGQYII-VDIQANAFVHHMVRNIVGSL 202
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + + L++ R AP A PEGL LV+V Y P N +P
Sbjct: 203 IEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYLVNVIY----PDNFNLP 250
>gi|373488926|ref|ZP_09579589.1| tRNA pseudouridine synthase A [Holophaga foetida DSM 6591]
gi|372004402|gb|EHP05041.1| tRNA pseudouridine synthase A [Holophaga foetida DSM 6591]
Length = 214
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
NRFL VR++ TLV +++ +++A RR APP GLC+ V Y +
Sbjct: 147 GNRFLMHQVRIMAGTLVDVGKGRMAPESIPAVLEARDRRRAGQTAPPHGLCMEKVWYQS 205
>gi|375266270|ref|YP_005023713.1| tRNA pseudouridine synthase A [Vibrio sp. EJY3]
gi|369841590|gb|AEX22734.1| tRNA pseudouridine synthase A [Vibrio sp. EJY3]
Length = 264
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 154 YHARATEAILPC------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++ +
Sbjct: 155 FRAAHCQSLSPCRNMMHLNVTRHGD---YVVIDIKANAFVHHMVRNITGSLIKVGRGEEN 211
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + L++A R+ A EGL LVDV Y PQ +P
Sbjct: 212 PEWIKWLLEAKDRKLAGATAKAEGLYLVDVDY----PQEFDLP 250
>gi|227520026|ref|ZP_03950075.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|424678887|ref|ZP_18115725.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|424679734|ref|ZP_18116548.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|424684141|ref|ZP_18120867.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|424688418|ref|ZP_18125024.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|424691534|ref|ZP_18128057.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|424695104|ref|ZP_18131488.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|424696506|ref|ZP_18132851.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|424701862|ref|ZP_18138028.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|424704952|ref|ZP_18141038.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|424706343|ref|ZP_18142350.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|424719034|ref|ZP_18148262.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|424719954|ref|ZP_18149080.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|424722761|ref|ZP_18151786.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|424733438|ref|ZP_18161998.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|424735242|ref|ZP_18163712.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|424754586|ref|ZP_18182495.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|424757475|ref|ZP_18185211.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
gi|227072574|gb|EEI10537.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|402350590|gb|EJU85492.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|402355689|gb|EJU90451.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|402360862|gb|EJU95456.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|402362089|gb|EJU96629.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|402362698|gb|EJU97216.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|402368951|gb|EJV03250.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|402370826|gb|EJV05015.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|402377548|gb|EJV11446.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|402380110|gb|EJV13879.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|402380562|gb|EJV14312.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|402388151|gb|EJV21600.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|402391806|gb|EJV25086.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|402394917|gb|EJV28064.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|402400943|gb|EJV33748.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|402403035|gb|EJV35727.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|402404132|gb|EJV36763.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|402406802|gb|EJV39347.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
Length = 249
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKY 247
>gi|168184901|ref|ZP_02619565.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|237795344|ref|YP_002862896.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
gi|182672019|gb|EDT83980.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|229263868|gb|ACQ54901.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
Length = 246
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
V+LV + FL KM+R+L TL+ + +++A RR P AP +GL +
Sbjct: 183 VDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGLFMTS 242
Query: 237 VGY 239
V Y
Sbjct: 243 VDY 245
>gi|357030900|ref|ZP_09092844.1| tRNA pseudouridine synthase A [Gluconobacter morbifer G707]
gi|356415594|gb|EHH69237.1| tRNA pseudouridine synthase A [Gluconobacter morbifer G707]
Length = 268
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H EG V+ + A FL VR +V +L + D + + + A R P +PP
Sbjct: 189 HREGECVI-INTKARSFLHHQVRNMVGSLALVGSGQWTPDRMGEALAARNRCMAGPTSPP 247
Query: 230 EGLCLVDVGY 239
EGLCL VGY
Sbjct: 248 EGLCLTGVGY 257
>gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.]
Length = 246
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 137 RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVA 196
RD KA G P + I +E I N+ ++ E+ A+ FLR MVR +V
Sbjct: 152 RDFKAFEGSGSPRKSTIRTVLRSELI----ENED----NIIQFEIEADGFLRFMVRNIVG 203
Query: 197 TLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+L+ + ++D+ RR + APP GL LV V Y
Sbjct: 204 SLISVGLGKLKPLDIKTILDSKDRRKASATAPPGGLFLVKVRY 246
>gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 244
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|42559846|sp|Q8XHV5.1|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 244
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|402494580|ref|ZP_10841321.1| tRNA pseudouridine synthase A [Aquimarina agarilytica ZC1]
Length = 250
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 128 KLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGR-KVMCVELVANRF 186
+LL Y F +K+ ++ C +++A H E + +V+ ++ ANRF
Sbjct: 143 QLLKYTNFKCFSKSKTDV-KTYNCELFYA-------------HWEKQGEVLVFKISANRF 188
Query: 187 LRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
LR MVR +V TL+ + +++ + R P +GL L DV Y
Sbjct: 189 LRNMVRAIVGTLIEVGQGKLKLADIDRILVSENRGEAGYSVPAKGLYLTDVTY 241
>gi|392965058|ref|ZP_10330478.1| tRNA pseudouridine synthase A [Fibrisoma limi BUZ 3]
gi|387846441|emb|CCH52524.1| tRNA pseudouridine synthase A [Fibrisoma limi BUZ 3]
Length = 266
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + A+RFLR MVR +V TL+ +++ A R+ AP EGL LV+
Sbjct: 185 LTFHIKADRFLRGMVRAIVGTLLMVGQGRMSVAEFDRIILARDRKQAGRAAPAEGLSLVE 244
Query: 237 VGY 239
V Y
Sbjct: 245 VAY 247
>gi|423121427|ref|ZP_17109111.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376394262|gb|EHT06913.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 270
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R+ A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRKLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
+ + G G + + ++ + FL MVR+LV TL+ D++ ++++A R+A
Sbjct: 171 IQERGSG---LEIHVIGDGFLYNMVRILVGTLIEVGLGKRTPDSMREILEAKDRQAAGAT 227
Query: 227 APPEGLCLVDVGY 239
AP GL L V Y
Sbjct: 228 APACGLFLTAVMY 240
>gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A [Butyrivibrio proteoclasticus B316]
gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus
B316]
Length = 262
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 62/230 (26%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY-IFPLNDGENREQSIDSEVEVENFH 77
A+N P IR+++ +V+ FHP + Y Y IF Q +D H
Sbjct: 82 ALNHELPQDIRIVNSREVATSFHPRHCDTEKTYEYRIF-------NSQIMDPTKRFYTCH 134
Query: 78 TSN--NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFT-ICRVNLLLQRLEGKLLSYKT 134
S ++G+ + + + G H+ FT C V E + LS+
Sbjct: 135 FSMPLDIGRMNAAAHYLV-----------GEHD----FTSFCNV-------ESQALSHVR 172
Query: 135 FARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVL 194
+D + +RN G +V+ + + N FL MVR++
Sbjct: 173 TIKDIRVTRN----------------------------GDEVV-ISVTGNGFLYNMVRII 203
Query: 195 VATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
TL++ + ++D R A P AP EGL LV+ + + P
Sbjct: 204 AGTLMQIGRGKGTPAEVKDILDKKYRGAAGPTAPAEGLFLVEYKFLDGIP 253
>gi|190571328|ref|YP_001975686.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018724|ref|ZP_03334532.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238057739|sp|B3CMC1.1|TRUA_WOLPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|190357600|emb|CAQ55041.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995675|gb|EEB56315.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 245
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A FL VR++V TLV + +L ++ R A APP GL LV
Sbjct: 183 IYIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGITAPPHGLYLVK 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IDY 245
>gi|257084178|ref|ZP_05578539.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256992208|gb|EEU79510.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 249
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+LV TL++ + A+ ++ A R P A PEGL L +V Y
Sbjct: 194 FLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKY 247
>gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
gi|259550397|sp|C5D3U9.1|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
Length = 248
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ N FL MVR++V T++ D++ +A R+ APP+GL L V Y
Sbjct: 188 FIGNGFLYNMVRIIVGTILEVGQGKRSIDSISHAFEAKDRQFAGKTAPPQGLYLWKVYYD 247
Query: 241 N 241
N
Sbjct: 248 N 248
>gi|222475190|ref|YP_002563606.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Florida]
gi|254995027|ref|ZP_05277217.1| tRNA pseudouridine synthase A [Anaplasma marginale str.
Mississippi]
gi|255003171|ref|ZP_05278135.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Puerto
Rico]
gi|255004302|ref|ZP_05279103.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Virginia]
gi|254789601|sp|B9KIN8.1|TRUA_ANAMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222419327|gb|ACM49350.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str.
Florida]
Length = 247
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG + V + A FL K VR++V TLV+ +L++++ R A APP G
Sbjct: 181 EGNNIF-VHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239
Query: 232 LCLVDVGY 239
L LV V Y
Sbjct: 240 LYLVLVEY 247
>gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
gi|14548295|sp|Q9UZZ3.1|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5]
gi|380741777|tpe|CCE70411.1| TPA: tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
Length = 263
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRAT-APPAPPEGLCL 234
++ +E+ A FL +MVR +V L + + ++++ ++ PPAPPEGL L
Sbjct: 159 ILIIEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLEGKFEKSKKVPPAPPEGLLL 218
Query: 235 VDVGYTNFD 243
VD+ Y +
Sbjct: 219 VDIKYEGIE 227
>gi|416057446|ref|ZP_11580202.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416085417|ref|ZP_11587163.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444350053|ref|ZP_21157306.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348000792|gb|EGY41560.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348010220|gb|EGY50290.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|443543315|gb|ELT53571.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 272
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 58/232 (25%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V FH FSA RRY YI N + S +
Sbjct: 88 GVNANLPDDIAVRWAKVVEDDFHARFSATARRYRYILYCN-------KLRSAI------- 133
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 134 ---LPQGVTHCHLELDHQLMHDAGQ------------------------ALLGENDFSSF 166
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T +G+ ++ V++ AN F+ MVR +V +L
Sbjct: 167 RAAQCQSNTPWRN-VHHLNVTR-----------QGQYII-VDIQANAFVHHMVRNIVGSL 213
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + + L++ R AP A PEGL LV+V Y P N +P
Sbjct: 214 IEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYLVNVIY----PDNFNLP 261
>gi|387818125|ref|YP_005678470.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
gi|322806167|emb|CBZ03735.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
Length = 246
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
V+LV + FL KM+R+L TL+ + +++A RR P AP +GL +
Sbjct: 183 VDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGLFMTS 242
Query: 237 VGY 239
V Y
Sbjct: 243 VDY 245
>gi|295691224|ref|YP_003594917.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756]
gi|295433127|gb|ADG12299.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756]
Length = 247
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
++ A FL + VR + TLV A D + ++A RR P AP +GL LV VG
Sbjct: 185 LDFEARSFLHRQVRSMTGTLVEVGAGRWTPDDVKAALEAKDRRECGPVAPADGLYLVGVG 244
Query: 239 YTN 241
Y +
Sbjct: 245 YGD 247
>gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 244
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|410696408|gb|AFV75476.1| pseudouridylate synthase I [Thermus oshimai JL-2]
Length = 248
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FLR VR +V TLV +++L +++ RR P APP+GL V+ Y
Sbjct: 190 GNSFLRGQVRGMVGTLVEIGRGKRPKESLKAILETGERRLAGPSAPPQGLYFVEATY 246
>gi|405983879|ref|ZP_11042184.1| tRNA pseudouridine(38-40) synthase [Slackia piriformis YIT 12062]
gi|404388694|gb|EJZ83776.1| tRNA pseudouridine(38-40) synthase [Slackia piriformis YIT 12062]
Length = 270
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 130 LSYKTFARDTKASRNIGP---PTECFIYHARATEA--------ILPCPVNDHG-EGRKVM 177
LS A + A+R +G + C A EA ++ C V + G V+
Sbjct: 140 LSLDVDAMNQAAARFVGEHDFKSFCMAASAHIIEADGRSTCRNVMTCGVYEEVLAGTPVI 199
Query: 178 CVELVANRFLRKMVRVLVATLVREAAAGADEDALL-KLMDATCRRATAPPAPPEGLCLVD 236
V +V N FL MVR +V TLV E G A + +++ A R A AP GL
Sbjct: 200 TVRVVGNAFLHSMVRTMVGTLV-EVGRGKRSVAWIDEVLQARNRSAAGQNAPAAGLTFWR 258
Query: 237 VGY 239
VGY
Sbjct: 259 VGY 261
>gi|313672355|ref|YP_004050466.1| tRNA pseudouridine synthase a [Calditerrivibrio nitroreducens DSM
19672]
gi|312939111|gb|ADR18303.1| tRNA pseudouridine synthase A [Calditerrivibrio nitroreducens DSM
19672]
Length = 248
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ AN FL MVR ++ T +++++++ R+ P APP+GL L
Sbjct: 185 IINIEINANGFLHNMVRNIIGTAFFIYRKKLHPSTVMEIIESRDRKKGGPTAPPQGLYLK 244
Query: 236 DVGY 239
+V Y
Sbjct: 245 EVFY 248
>gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
Length = 244
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG K+ + + A+ FL MVR++V TL++ + + +++D+ R+ PP G
Sbjct: 178 EGNKIK-IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTG 236
Query: 232 LCLVDVGY 239
LCL V Y
Sbjct: 237 LCLEKVFY 244
>gi|163816009|ref|ZP_02207379.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759]
gi|158448819|gb|EDP25814.1| tRNA pseudouridine synthase A [Coprococcus eutactus ATCC 27759]
Length = 254
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+ + N FL MVR++V TL++ ED + ++ A R P A +GL LV++
Sbjct: 193 IRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILAAKDRTKAGPKAEAKGLTLVEIK 252
Query: 239 Y 239
Y
Sbjct: 253 Y 253
>gi|269958752|ref|YP_003328539.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel]
gi|269848581|gb|ACZ49225.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel]
Length = 247
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG + V + A FL K VR++V TLV+ +L++++ R A APP G
Sbjct: 181 EGNNIF-VHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239
Query: 232 LCLVDVGY 239
L LV V Y
Sbjct: 240 LYLVLVEY 247
>gi|127513234|ref|YP_001094431.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4]
gi|166229835|sp|A3QFC4.1|TRUA_SHELP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|126638529|gb|ABO24172.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4]
Length = 261
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLV 235
+CV++ AN FL MVR +V +L+ E G + +K L+ R A A P GL LV
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLL-EVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYLV 239
Query: 236 DVGYTNFDPQNSLIP 250
DV Y P++ +P
Sbjct: 240 DVTY----PEHYALP 250
>gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
Length = 262
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 157 RATEAILPCPVN-----DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDAL 211
RA E PV D E + +L+A+ FL MVR +V LV + +
Sbjct: 156 RAAECQAKSPVKHLQRLDIHEADGFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPEDM 215
Query: 212 LKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ L+ A RR P P+GL L VGY
Sbjct: 216 VDLLSARDRRHAPPTFMPDGLYLTGVGY 243
>gi|56416825|ref|YP_153899.1| tRNA pseudouridine synthase A [Anaplasma marginale str. St. Maries]
gi|62901203|sp|Q5PAN6.1|TRUA_ANAMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56388057|gb|AAV86644.1| pseudouridylate synthase [Anaplasma marginale str. St. Maries]
Length = 247
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG + V + A FL K VR++V TLV+ +L++++ R A APP G
Sbjct: 181 EGNNIF-VHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239
Query: 232 LCLVDVGY 239
L LV V Y
Sbjct: 240 LYLVLVEY 247
>gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3]
gi|3915167|sp|O58941.1|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus
horikoshii OT3]
Length = 262
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA-TAPPAPPEGLCL 234
V+ +E+ A FL +MVR +V TL + + K++ ++ PPAP EGL L
Sbjct: 159 VLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKMLRGKFEKSRKVPPAPAEGLLL 218
Query: 235 VDVGYTNFD 243
V+V Y +
Sbjct: 219 VEVKYKGIE 227
>gi|357042378|ref|ZP_09104084.1| tRNA pseudouridine synthase A [Prevotella histicola F0411]
gi|355369837|gb|EHG17228.1| tRNA pseudouridine synthase A [Prevotella histicola F0411]
Length = 251
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 178 CVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDV 237
C + ANRFLR MVR +V TLV + K++D R P L L D+
Sbjct: 190 CFVISANRFLRNMVRAVVGTLVEVGRHRMSIEEFKKIVDGGTRSDAGESMPGNALFLWDI 249
Query: 238 GY 239
Y
Sbjct: 250 KY 251
>gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
Length = 403
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 4 LDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFP 56
+D WR D +I D IN P IRV V VS+ F P + R Y Y P
Sbjct: 89 IDAWRDDPGGIEIADMINRHLPQCIRVFGVVPVSKTFRPRMACSERSYDYFLP 141
>gi|297623065|ref|YP_003704499.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093]
gi|297164245|gb|ADI13956.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093]
Length = 260
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A+ FLR MVR +V TL+ + + L+ A RR P APP GL +
Sbjct: 187 LTLDIAADGFLRNMVRAVVGTLLWVGEGKLAPEDVSALLAARDRRRAGPNAPPHGLYFAE 246
Query: 237 VGY 239
GY
Sbjct: 247 AGY 249
>gi|218135247|ref|ZP_03464051.1| hypothetical protein BACPEC_03152 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990632|gb|EEC56643.1| hypothetical protein BACPEC_03152 [[Bacteroides] pectinophilus ATCC
43243]
Length = 83
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
D GR+++ + + N FL MVR++ TL+ ++ + +D R P AP
Sbjct: 9 DLDRGREIV-IRVSGNGFLYNMVRIIAGTLIDAGCKRRTPLSVKEALDGCNRELAGPTAP 67
Query: 229 PEGLCLVDVGY 239
P+GL L+++ +
Sbjct: 68 PQGLTLIEIKH 78
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
D E R ++ +++ A+ FL MVR + L + D + L+D R AP AP
Sbjct: 155 DLTEERGIVVIDVRADGFLWNMVRKMAKVLELVGSGDRDLAWVEALLDPRTNRGVAP-AP 213
Query: 229 PEGLCLVDVGY 239
EGL ++DVGY
Sbjct: 214 AEGLVMMDVGY 224
>gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270]
gi|158446190|gb|EDP23185.1| tRNA pseudouridine synthase A [Parvimonas micra ATCC 33270]
Length = 247
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
F+R VR++V TLV +ED L +++D+ R P GL L+++ Y F
Sbjct: 191 FIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLYLMEILYDKF 247
>gi|148655308|ref|YP_001275513.1| tRNA pseudouridine synthase ACD [Roseiflexus sp. RS-1]
gi|166229831|sp|A5USG0.1|TRUA_ROSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148567418|gb|ABQ89563.1| tRNA pseudouridine synthase A [Roseiflexus sp. RS-1]
Length = 270
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G+ ++ +++ AN FLR MVR LV TL++ D D ++ RRA AP GL
Sbjct: 181 GQPLVLIDIAANAFLRHMVRNLVGTLIQVGEGRIDADRFAAVLAGDDRRARV-LAPAHGL 239
Query: 233 CLVDVGY 239
L+ V Y
Sbjct: 240 YLMAVRY 246
>gi|402305379|ref|ZP_10824438.1| tRNA pseudouridine(38-40) synthase [Haemophilus sputorum HK 2154]
gi|400376492|gb|EJP29379.1| tRNA pseudouridine(38-40) synthase [Haemophilus sputorum HK 2154]
Length = 263
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLV 235
+ V++ AN F+ MVR +V +L+ E G +K L++ R AP A EGL LV
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLI-EVGQGKQPPIWIKWLLEQKDRTLAAPTAKAEGLYLV 239
Query: 236 DVGYTNFD--PQNSLIP 250
DV Y P +SL P
Sbjct: 240 DVIYPEHYGLPHSSLGP 256
>gi|398792853|ref|ZP_10553414.1| pseudouridylate synthase I, partial [Pantoea sp. YR343]
gi|398212550|gb|EJM99158.1| pseudouridylate synthase I, partial [Pantoea sp. YR343]
Length = 256
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ E+ + L+ A R+
Sbjct: 164 VMHLNVTRHG---PYVVVDIKANAFVHHMVRNIVGSLMEIGTGNQPEEWMATLLAAKDRK 220
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
A A EGL LV V Y ++F PQ +L P
Sbjct: 221 LAAATAKAEGLYLVAVDYPSHFALPQPALGP 251
>gi|373450264|ref|ZP_09542284.1| tRNA pseudouridine synthase A [Wolbachia pipientis wAlbB]
gi|371932515|emb|CCE77282.1| tRNA pseudouridine synthase A [Wolbachia pipientis wAlbB]
Length = 245
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A FL VR++V TLV + +L ++ R A APP GL LV
Sbjct: 183 IYIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGVTAPPHGLYLVK 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IDY 245
>gi|359300129|ref|ZP_09185968.1| tRNA pseudouridine synthase A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 263
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLK-LMDATCRRATAPPAPPEGLCLV 235
+ V++ AN F+ MVR +V +L+ E G +K L++ R AP A EGL LV
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLI-EVGQGKQPPIWIKWLLEQKDRTLAAPTAKAEGLYLV 239
Query: 236 DVGY-TNFD-PQNSLIP 250
DV Y +F P +SL P
Sbjct: 240 DVIYPEHFGLPHSSLGP 256
>gi|327398248|ref|YP_004339117.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411]
gi|327180877|gb|AEA33058.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411]
Length = 241
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 10 DVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGE 61
D++ ++ A+NS P IR+ SV V FH +SAK+R Y+Y DGE
Sbjct: 68 DIETYSLKKALNSVLPEDIRIKSVKIVDNSFHSRYSAKFREYVYF--AFDGE 117
>gi|433637124|ref|YP_007282884.1| pseudouridylate synthase [Halovivax ruber XH-70]
gi|433288928|gb|AGB14751.1| pseudouridylate synthase [Halovivax ruber XH-70]
Length = 300
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 80/228 (35%), Gaps = 62/228 (27%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF--PLNDGENREQSIDSEVEVENF 76
A+N+ P +IR + + V FH A R Y Y P G +R
Sbjct: 93 ALNAELPAEIRAWASADVPDSFHATHDATARTYTYHLYAPAESGNDR------------- 139
Query: 77 HTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFA 136
N GK + +HE R R + L L G
Sbjct: 140 ----NRGKLAT------------------THE--RRVDDARFHEALDALAG--------- 166
Query: 137 RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVA 196
T N+ P E TE L + G+ V+ V + A F R++VR LV
Sbjct: 167 --TNDYHNLTPDDE-------GTERTLSLAADRDGD---VLTVTVQAGGFARQLVRRLVT 214
Query: 197 TLVREAAAGADEDALLKLMDATC--RRATAPPAPPEGLCLVDVGYTNF 242
L R + A + + +++ + PPAPPE L L DV Y N
Sbjct: 215 LLHRVGTSEAPLEKIDRVLTSESLPGHEGIPPAPPEPLVLTDVTYPNI 262
>gi|388598707|ref|ZP_10157103.1| tRNA pseudouridine synthase A [Vibrio campbellii DS40M4]
gi|444429035|ref|ZP_21224303.1| tRNA pseudouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237737|gb|ELU49402.1| tRNA pseudouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 264
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 154 YHARATEAILPC------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++
Sbjct: 155 FRAAHCQSLSPCRNMMHLNVTRHGD---YIVIDIKANAFVHHMVRNITGSLIKVGRGEEK 211
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + L++A R+ A EGL LVDV Y
Sbjct: 212 PEWIKSLLEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|395763394|ref|ZP_10444063.1| tRNA pseudouridine synthase A [Janthinobacterium lividum PAMC
25724]
Length = 276
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 174 RKVMCV--ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
R+ CV + AN FL MVR LV +LV + L L+ + R A AP P+G
Sbjct: 192 RRGDCVIFTITANAFLHHMVRNLVGSLVYIGTGREKPEWLGHLLQSKDRHAAAPTFMPDG 251
Query: 232 LCLVDVGYTNFDPQNSL 248
L L + Y DP+ +L
Sbjct: 252 LYLAQIDY---DPKWAL 265
>gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 250
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
FLR MVR++VATLV + + ++ + R+ APP+GL L V Y N+
Sbjct: 192 FLRHMVRIMVATLVEVGKGKLRPEDIKEIREKKNRKFAPFLAPPDGLYLEKVYYDNY 248
>gi|153834426|ref|ZP_01987093.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01]
gi|156975370|ref|YP_001446277.1| tRNA pseudouridine synthase A [Vibrio harveyi ATCC BAA-1116]
gi|166229849|sp|A7MS76.1|TRUA_VIBHB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148869197|gb|EDL68225.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01]
gi|156526964|gb|ABU72050.1| hypothetical protein VIBHAR_03101 [Vibrio harveyi ATCC BAA-1116]
Length = 264
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 154 YHARATEAILPC------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++
Sbjct: 155 FRAAHCQSLSPCRNMMHLNVTRHGD---YIVIDIKANAFVHHMVRNITGSLIKVGRGEEK 211
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + L++A R+ A EGL LVDV Y
Sbjct: 212 PEWIKSLLEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|407788274|ref|ZP_11135407.1| tRNA pseudouridine synthase A [Celeribacter baekdonensis B30]
gi|407197757|gb|EKE67808.1| tRNA pseudouridine synthase A [Celeribacter baekdonensis B30]
Length = 261
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
L A FL VR V TL R A + ++A R A P PP+GL L+ VGY
Sbjct: 191 LRARSFLHNQVRSFVGTLERVGAGSWTPQDVTTALEACDRAACGPVCPPQGLYLMGVGYA 250
Query: 241 NFDP 244
+ DP
Sbjct: 251 D-DP 253
>gi|299771694|ref|YP_003733720.1| tRNA pseudouridine synthase A [Acinetobacter oleivorans DR1]
gi|298701782|gb|ADI92347.1| tRNA pseudouridine synthase A [Acinetobacter oleivorans DR1]
Length = 265
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 165 CPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA 224
C + +HG + + +++ A+ FL MVR +V L+ + D + + A R+A
Sbjct: 174 CRLFEHG---RYLVLDIEADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAG 230
Query: 225 PPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
APP+GL + Y FD PQ L P
Sbjct: 231 VTAPPDGLYFIQCNYPEQFDLPQPPLGP 258
>gi|398347904|ref|ZP_10532607.1| pseudouridylate synthase [Leptospira broomii str. 5399]
Length = 277
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
AN FL M+R+L TL+ A E +L+++ + R PP GL + Y +F
Sbjct: 200 ANGFLHNMIRILTGTLLEIATGKRKETNILEILSSKDRTIAGITLPPYGLYFIRAYYDSF 259
Query: 243 DPQNSL 248
+SL
Sbjct: 260 PQIDSL 265
>gi|225010595|ref|ZP_03701066.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C]
gi|225005424|gb|EEG43375.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C]
Length = 218
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + ANRFLR MVR +V TL+ + L++ R P P +GL L
Sbjct: 150 LVFTITANRFLRNMVRAIVGTLLEIGTGKRPVTDIPLLLETKSRSKAGPSVPAKGLYLTQ 209
Query: 237 VGY 239
+ Y
Sbjct: 210 INY 212
>gi|347539310|ref|YP_004846735.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345642488|dbj|BAK76321.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 262
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 157 RATEAILPCPVN-----DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDAL 211
RA E PV D E + +L+A+ FL MVR +V LV + +
Sbjct: 156 RAAECQAKSPVKHLQRLDIHEADGFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPEDM 215
Query: 212 LKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ L+ A RR P P+GL L VGY
Sbjct: 216 VDLLSARDRRHAPPTFMPDGLYLTGVGY 243
>gi|350561680|ref|ZP_08930518.1| tRNA pseudouridine synthase A [Thioalkalivibrio thiocyanoxidans ARh
4]
gi|349780712|gb|EGZ35030.1| tRNA pseudouridine synthase A [Thioalkalivibrio thiocyanoxidans ARh
4]
Length = 281
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H +GR V+ +++ AN FL MVR + L+ D + ++M+A RRA+ AP
Sbjct: 181 HRQGRYVV-LDVHANAFLHHMVRNIAGVLLPIGQGRRDAGWVHEIMNARDRRASGITAPA 239
Query: 230 EGLCLVDVGYTNFDPQNSL 248
GL LV V ++DP + L
Sbjct: 240 GGLYLVGV---DYDPVHRL 255
>gi|22297651|ref|NP_680898.1| tRNA pseudouridine synthase A [Thermosynechococcus elongatus BP-1]
gi|34222849|sp|Q8CWM6.1|TRUA_THEEB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|22293828|dbj|BAC07660.1| tRNA-pseudouridine synthase I [Thermosynechococcus elongatus BP-1]
Length = 284
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL M+R+LV LV+ + ++ R APP GLCL+ VG
Sbjct: 195 IEVQASGFLYGMMRLLVGLLVQVGQGQRSPASFTEIWQQEQRHLVKYAAPPSGLCLLGVG 254
Query: 239 Y 239
Y
Sbjct: 255 Y 255
>gi|398342282|ref|ZP_10526985.1| pseudouridylate synthase [Leptospira inadai serovar Lyme str. 10]
Length = 277
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
AN FL M+R+L TL+ A E +L+++ + R PP GL + Y +F
Sbjct: 200 ANGFLHNMIRILTGTLLEIATGKRKETNILEILSSKDRTIAGITLPPYGLYFIRAYYDSF 259
Query: 243 DPQNSL 248
+SL
Sbjct: 260 PQIDSL 265
>gi|386866618|ref|YP_006279612.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385700701|gb|AFI62649.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 293
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 142 SRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVRE 201
+R++ P YHA A E+ L +C +VA+ F R MVR LV V+
Sbjct: 190 TRSLIEPGMGERYHAPAVESGL-------------LCFTIVADAFARNMVRSLVGACVQV 236
Query: 202 AAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D D M R + P P+GL L + Y
Sbjct: 237 GMGKRDVDWFAGKMHVPLREGSTGPIAPQGLTLEHIAY 274
>gi|291549528|emb|CBL25790.1| pseudouridylate synthase I [Ruminococcus torques L2-14]
Length = 256
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ + + N FL MVR+L TL+ + + +++A R+A PP+GL L
Sbjct: 180 ELITIRVRGNGFLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQAAGMTVPPQGLTL 239
Query: 235 VDVGYTNFDPQ 245
V + Y + Q
Sbjct: 240 VKIDYLDEKKQ 250
>gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
Length = 437
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 4 LDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFP 56
+D WR D +I D IN P IRV V VS+ F P + R Y Y P
Sbjct: 116 IDAWRDDPGGIEIADRINRHLPQCIRVFGVVPVSKTFRPRMACSERSYDYFLP 168
>gi|293610220|ref|ZP_06692521.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423045|ref|ZP_18913211.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-136]
gi|292827452|gb|EFF85816.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700145|gb|EKU69736.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-136]
Length = 265
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 165 CPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA 224
C + +HG + + +++ A+ FL MVR +V L+ + D + + A R+A
Sbjct: 174 CRLFEHG---RYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAG 230
Query: 225 PPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
APP+GL + Y FD PQ L P
Sbjct: 231 VTAPPDGLYFIHCNYPEQFDLPQPPLGP 258
>gi|344210745|ref|YP_004795065.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
gi|343782100|gb|AEM56077.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
Length = 275
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA------PPAP 228
+ + V L A F R++VR LV+ AAA AD A L +D +A PPAP
Sbjct: 169 QFLVVRLTAGGFCRQLVRRLVSL----AAAVADGSAQLSKVDRILSPESASGPDGVPPAP 224
Query: 229 PEGLCLVDVGYTN 241
PE L L DV Y N
Sbjct: 225 PEPLVLTDVRYPN 237
>gi|194366624|ref|YP_002029234.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3]
gi|238693473|sp|B4SQV6.1|TRUA_STRM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|194349428|gb|ACF52551.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3]
Length = 256
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 149 TECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADE 208
+C HAR + V+ HGE V+ V + N FL MVR +V +L+ +
Sbjct: 159 VQCQALHAR--RELQSLQVSRHGE---VIEVSVQGNAFLHHMVRNIVGSLILVGSGEKPV 213
Query: 209 DALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + +L+ R P APP+GL + Y P N +P
Sbjct: 214 EWIAELLAGRDRTVAGPTAPPQGLVFLGPLY----PDNWHLP 251
>gi|86141215|ref|ZP_01059761.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217]
gi|85831774|gb|EAQ50229.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217]
Length = 263
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA-PPAPPEGLCLVDVGY 239
A+RFLR MVR +V TL+ E G + A LK + A+ R+ A AP GL L +V Y
Sbjct: 197 ADRFLRNMVRAIVGTLL-EIGQGKLKPAALKTIIASRTRSEAGASAPAHGLYLTEVAY 253
>gi|237756326|ref|ZP_04584878.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691512|gb|EEP60568.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 243
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP---PAPPEG 231
K++ +E+ A+ FLR MVR +V LV A G +L +L D +++ + APPEG
Sbjct: 179 KIITIEITASHFLRNMVRRIVGHLV---ALGRGSLSLEELKDIIEKKSPSHGKYTAPPEG 235
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 236 LYLKAVYY 243
>gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
Length = 271
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G++V V +V N FL MVR +V TLV + + + +++A R A AP +GL
Sbjct: 204 GQQVATVRVVGNAFLHSMVRTIVGTLVEVGRGRRNPEWVCDVLEARNRGAAGQNAPAQGL 263
Query: 233 CLVDVGY 239
V Y
Sbjct: 264 VFWHVEY 270
>gi|438001157|ref|YP_007270900.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|432177951|emb|CCP24924.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 256
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ AN FL MVR++ TL+ + ++ ++ + R PP+GLCL+
Sbjct: 193 IVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCLI 252
Query: 236 DVGY 239
V Y
Sbjct: 253 KVIY 256
>gi|319952056|ref|YP_004163323.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237]
gi|319420716|gb|ADV47825.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237]
Length = 250
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + A+RFLR MVR +V TL+ D + ++ + R AP +GL L
Sbjct: 178 ILVFTITADRFLRNMVRAIVGTLLEVGLGKIDISNVKAILKSKDRSKAGASAPAKGLYLT 237
Query: 236 DVGY 239
V Y
Sbjct: 238 SVLY 241
>gi|298373324|ref|ZP_06983313.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274376|gb|EFI15928.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str.
F0058]
Length = 247
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
+ +VA+RFLR MVR V TL+ D ++++A R+ +GL L
Sbjct: 178 IWIFTIVADRFLRDMVRATVGTLILVGEGRITVDDFCRIIEAKDRQKAGQSIDAQGLYLT 237
Query: 236 DVGY 239
D+ Y
Sbjct: 238 DIQY 241
>gi|424745508|ref|ZP_18173771.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-141]
gi|422942201|gb|EKU37262.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-141]
Length = 265
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 165 CPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA 224
C + +HG + + +++ A+ FL MVR +V L+ + D + + A R+A
Sbjct: 174 CRLFEHG---RYLVLDIEADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAG 230
Query: 225 PPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
APP+GL + Y FD PQ L P
Sbjct: 231 ITAPPDGLYFIQCNYPEQFDLPQPPLGP 258
>gi|354807782|ref|ZP_09041238.1| tRNA pseudouridine synthase A [Lactobacillus curvatus CRL 705]
gi|354513729|gb|EHE85720.1| tRNA pseudouridine synthase A [Lactobacillus curvatus CRL 705]
Length = 254
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 72/221 (32%), Gaps = 52/221 (23%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+NS P + V+ FH FS +RY+Y L H
Sbjct: 80 ALNSLLPLDMEVVDSQLADDDFHARFSTVGKRYMYRVDLG------------------HY 121
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+N ++ G Y P + R+ L + G Y +FA
Sbjct: 122 TNPFKRRYTGHY-------------------PYPIDVERIQAALPDVMGTH-DYTSFA-- 159
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
AS + IY A + E + E N FL MVR+LV TL
Sbjct: 160 --ASGGVIKDKVRTIYDATVVFS----------ESENELVFEFYGNGFLYNMVRILVGTL 207
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ D L+L + R+ AP GL L V Y
Sbjct: 208 LEIGNGRRDVHDFLRLYEVKDRQQARSTAPASGLYLKKVYY 248
>gi|337292758|emb|CCB90763.1| trNA pseudouridine synthase A 1 [Waddlia chondrophila 2032/99]
Length = 254
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
M +E FL KMVR + TL+ A + + K++++ RR AP +GL LV
Sbjct: 185 MRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAKGLFLVR 244
Query: 237 VGYTN 241
+ Y +
Sbjct: 245 IDYAS 249
>gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662]
gi|167652457|gb|EDR96586.1| tRNA pseudouridine synthase A [Anaerostipes caccae DSM 14662]
Length = 252
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 146 GPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAG 205
G PT+ + I C V +G + + + + N FL MVR++ TL+
Sbjct: 160 GSPTKTTV------RTIYECEVRQNG---RYITMRVTGNGFLYNMVRMMAGTLISIGRGR 210
Query: 206 ADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
D + + +L R P AP +GL L+++ Y +
Sbjct: 211 KDPEWVRELFLHPKRGKAGPNAPAKGLTLINIHYMD 246
>gi|146276554|ref|YP_001166713.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
gi|166228756|sp|A4WPU4.1|TRUA_RHOS5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145554795|gb|ABP69408.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
Length = 257
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + ++A R A P PP+GL L VGY
Sbjct: 191 LRARSFLHNQVRSIVGTLERVGAGAWAPDRVKEALEARDRAACGPVCPPQGLYLTGVGY 249
>gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
Length = 254
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
M +E FL KMVR + TL+ A + + K++++ RR AP +GL LV
Sbjct: 185 MRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAKGLFLVR 244
Query: 237 VGYTN 241
+ Y +
Sbjct: 245 IDYVS 249
>gi|16124533|ref|NP_419097.1| tRNA pseudouridine synthase A [Caulobacter crescentus CB15]
gi|221233219|ref|YP_002515655.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000]
gi|42559871|sp|Q9ABF0.1|TRUA_CAUCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789610|sp|B8GYF0.1|TRUA_CAUCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13421415|gb|AAK22265.1| tRNA pseudouridine synthase [Caulobacter crescentus CB15]
gi|220962391|gb|ACL93747.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000]
Length = 247
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
++ A FL + VR + TLV A D + ++A RR P AP +GL LV VG
Sbjct: 185 LDFEARSFLHRQVRSMTGTLVEVGAGRWTVDDVKAALEARDRRECGPVAPADGLYLVGVG 244
Query: 239 YTN 241
Y +
Sbjct: 245 YGD 247
>gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 240
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR++V TL E+ + ++ + R APP+GL L+ +
Sbjct: 180 IEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDRTKAGITAPPQGLYLIKII 239
Query: 239 Y 239
Y
Sbjct: 240 Y 240
>gi|354585399|ref|ZP_09004286.1| tRNA pseudouridine synthase A [Paenibacillus lactis 154]
gi|353188668|gb|EHB54188.1| tRNA pseudouridine synthase A [Paenibacillus lactis 154]
Length = 268
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ L N FL+ MVR+++ TL+ D + +++A R A P A +GL L
Sbjct: 191 IIHTYLTGNGFLQHMVRIIMGTLIEVGEGRRHPDDMRVILEAKNRAAAGPTAMSKGLMLW 250
Query: 236 DVGY 239
+V Y
Sbjct: 251 EVEY 254
>gi|328948028|ref|YP_004365365.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489]
gi|328448352|gb|AEB14068.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489]
Length = 261
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ ++ AN FL KMVR + TL++ A + K++++ R APP G
Sbjct: 187 ENPDLLVFQIEANAFLWKMVRSITGTLIQLAQKKCSPNEFKKILESRDRTKAGITAPPTG 246
Query: 232 LCLVDVGY 239
L L +V +
Sbjct: 247 LFLWEVKF 254
>gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
Length = 244
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TL + + + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDRTKAGITAPPQGLYLIKIM 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
>gi|189346490|ref|YP_001943019.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245]
gi|238692218|sp|B3EIU9.1|TRUA_CHLL2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189340637|gb|ACD90040.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245]
Length = 243
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V + ANRFLR MVR LV ++ A + L L+D PA P GL L
Sbjct: 180 VFVFRIRANRFLRSMVRYLVGVMIAVGRGRAVPEDLGMLLDDGLMTFPLFPAEPNGLFLW 239
Query: 236 DVGY 239
DV Y
Sbjct: 240 DVSY 243
>gi|428305845|ref|YP_007142670.1| tRNA pseudouridine synthase A [Crinalium epipsammum PCC 9333]
gi|428247380|gb|AFZ13160.1| tRNA pseudouridine synthase A [Crinalium epipsammum PCC 9333]
Length = 283
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV+ A + ++ R AP +GLCL+ VG
Sbjct: 193 IEIQASGFLYGMVRLLVGMLVQVGAKERSPEDFTQIWVEEHRNQVKYAAPAKGLCLLRVG 252
Query: 239 Y--TNFDPQ 245
Y + F P+
Sbjct: 253 YPESPFPPE 261
>gi|224024234|ref|ZP_03642600.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM
18228]
gi|224017456|gb|EEF75468.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM
18228]
Length = 249
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G+G V + A+RFLR MVR +V TLV D ++++ R + P
Sbjct: 177 GDGEWVFTIR--ADRFLRNMVRAVVGTLVEVGRGKLTVDGFRRVIEEKNRCSAGTSVPGH 234
Query: 231 GLCLVDVGY 239
L L DV Y
Sbjct: 235 ALYLTDVSY 243
>gi|422017565|ref|ZP_16364130.1| tRNA pseudouridine synthase A [Providencia alcalifaciens Dmel2]
gi|414105715|gb|EKT67272.1| tRNA pseudouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 271
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ D D + L++ R
Sbjct: 176 VMHVNVTRHG---NYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMAHLLELKDRT 232
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
A A EGL LV V Y FD PQN + P
Sbjct: 233 KAAATAKAEGLYLVSVDYPEKFDLPQNVMGP 263
>gi|374339101|ref|YP_005095837.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
gi|372100635|gb|AEX84539.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
Length = 244
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 60/226 (26%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
+I+DA+N+ P I V V +V F P A R Y Y
Sbjct: 74 NIKDALNANLPEDIYVRKVLKVRDKFSPRHEATKRIYHYF-------------------- 113
Query: 75 NFHTSNNVGKQSNGCYENIE-NLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK--LLS 131
Y+N E N+ + D + P + I ++ + LEG+ +
Sbjct: 114 --------------IYQNDEPNIFLRDRVWWF----PYDLNIEKMRKAAKYLEGEHDFTT 155
Query: 132 YKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMV 191
+KT D R I Y R IL N ++ + + + FLR+MV
Sbjct: 156 FKTGNDDRNPVRTI--------YRIR----ILKMRNN-------IILIRVEGHSFLRRMV 196
Query: 192 RVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDV 237
R +V LV+ + + + ++++A R APP+GL V
Sbjct: 197 RNIVGALVKVGTENWEPEYIKEILEAKSRSKAPASAPPQGLYFYSV 242
>gi|359689187|ref|ZP_09259188.1| pseudouridylate synthase [Leptospira licerasiae serovar Varillal
str. MMD0835]
Length = 266
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + + E ++ + + AN FL MVR+L TL A E +LK++ +
Sbjct: 164 TTRVIYDASLLESEEEPGLLRLRIKANGFLHNMVRILTGTLFEIAIEKRKETNILKILSS 223
Query: 218 TCRRATAPPAPPEGLCLVDVGYTNF 242
R PP GL + Y +F
Sbjct: 224 KDRTIAGITLPPYGLYFLKAYYDSF 248
>gi|332877177|ref|ZP_08444927.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357046523|ref|ZP_09108147.1| tRNA pseudouridine synthase A [Paraprevotella clara YIT 11840]
gi|332684920|gb|EGJ57767.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355530516|gb|EHG99924.1| tRNA pseudouridine synthase A [Paraprevotella clara YIT 11840]
Length = 268
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K + + C I AR TE + P GE R E+ A+RFLR
Sbjct: 151 LFDYTDFTSFSKVNTDT-KTNNCRIMQARWTE-LAP------GEWR----FEIQADRFLR 198
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TLV + +++ R P L LVDV Y
Sbjct: 199 NMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGESMPGNALFLVDVAY 249
>gi|322514646|ref|ZP_08067676.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322119437|gb|EFX91539.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 289
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 208 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 267
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ IP
Sbjct: 268 VHY----PEHFGIP 277
>gi|325182027|emb|CCA16480.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14]
Length = 209
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+C+ELVAN FLR MVR +V +L + +++ + P AP +GL L
Sbjct: 141 ICIELVANGFLRHMVRRIVGSLRLIGEGSQHPQEMHRILKSQVE--AGPSAPAKGLWLQQ 198
Query: 237 VGYTNF 242
+ +T+
Sbjct: 199 IWFTDM 204
>gi|315649669|ref|ZP_07902753.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453]
gi|315274857|gb|EFU38233.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453]
Length = 266
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ L N FL+ MVR+++ TL+ D + +++A R A P A +GL L
Sbjct: 191 VIHTYLSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKIILEAKNRAAAGPTAMGKGLMLW 250
Query: 236 DVGY 239
+V Y
Sbjct: 251 EVEY 254
>gi|383189194|ref|YP_005199322.1| pseudouridylate synthase I [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371587452|gb|AEX51182.1| pseudouridylate synthase I [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 276
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V + V FH FSA RRY Y+ NR +S V + H
Sbjct: 92 GVNTHLPKDIAVRWCANVGDDFHARFSATARRYRYVIY----NNRYRSAILHAGVTHVHM 147
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+V E + + + G ++ FT R + R + + + +R
Sbjct: 148 PLDV-----------EKMQLAGQALLGEND----FTSFRASQCQSRTPWRYVMHVNVSR- 191
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
HG + V++ AN F+ MVR +V +L
Sbjct: 192 -------------------------------HGS---YVVVDIKANAFVHHMVRNIVGSL 217
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
V A + +L+ A R A PEGL LV V Y
Sbjct: 218 VEIGAGNQPVGWMGELLAAKDRNLAAATGKPEGLYLVSVDY 258
>gi|149912589|ref|ZP_01901123.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149916040|ref|ZP_01904563.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149810114|gb|EDM69962.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149812995|gb|EDM72821.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
Length = 255
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G G + L A FL VR +V TL R A + + ++A R A P PP+
Sbjct: 181 GLGGPELRFHLSARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPPQ 240
Query: 231 GLCLVDVGYTNFDP 244
GL L VGY DP
Sbjct: 241 GLYLAGVGYPQ-DP 253
>gi|418748516|ref|ZP_13304808.1| tRNA pseudouridine(38-40) synthase [Leptospira licerasiae str.
MMD4847]
gi|418758707|ref|ZP_13314889.1| tRNA pseudouridine(38-40) synthase [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384114609|gb|EIE00872.1| tRNA pseudouridine(38-40) synthase [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404275585|gb|EJZ42899.1| tRNA pseudouridine(38-40) synthase [Leptospira licerasiae str.
MMD4847]
Length = 275
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
T I + + E ++ + + AN FL MVR+L TL A E +LK++ +
Sbjct: 173 TTRVIYDASLLESEEEPGLLRLRIKANGFLHNMVRILTGTLFEIAIEKRKETNILKILSS 232
Query: 218 TCRRATAPPAPPEGLCLVDVGYTNF 242
R PP GL + Y +F
Sbjct: 233 KDRTIAGITLPPYGLYFLKAYYDSF 257
>gi|423281882|ref|ZP_17260767.1| tRNA pseudouridine synthase A [Bacteroides fragilis HMW 615]
gi|404582369|gb|EKA87063.1| tRNA pseudouridine synthase A [Bacteroides fragilis HMW 615]
Length = 252
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ E + A+RFLR
Sbjct: 148 LFHYSDFTSFSKLHTDVKTNI-CKIMHAEWTQ-----------EDEYTWVFTIQADRFLR 195
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D K+++ R AP L LV+V Y
Sbjct: 196 NMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNALFLVNVEY 246
>gi|212712250|ref|ZP_03320378.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM
30120]
gi|212684996|gb|EEB44524.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM
30120]
Length = 271
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ D D + L++ R
Sbjct: 176 VMHVNVTRHG---NYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMAHLLELKDRT 232
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
A A EGL LV V Y FD PQN + P
Sbjct: 233 KAAATAKAEGLYLVSVDYPEKFDLPQNVMGP 263
>gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus]
Length = 402
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI D INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 130 VVSLKVWLID----DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF 185
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPR 111
++ D +V+ E++ S +Q N GCY+ N F S + PR
Sbjct: 186 AHK----DRDVQDESYRLSAETLQQVNRLLGCYKGTHNFH-----NFTSQKGPR 230
>gi|319789624|ref|YP_004151257.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1]
gi|317114126|gb|ADU96616.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1]
Length = 254
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 177 MCVELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ VEL+ FLR MVRV+VATLV+ + +++ A R APP+GL L
Sbjct: 185 VLVELLFTGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDRSRAPFLAPPDGLYL 244
Query: 235 VDVGYTNF 242
V Y ++
Sbjct: 245 ERVFYDDY 252
>gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
Length = 275
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H +G +V+ +E N FL MVR+L TL+ D++ K +++ R AP
Sbjct: 198 HRDGSRVL-LEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSVRKALESQDRENAGFTAPA 256
Query: 230 EGLCLVDVGY 239
EGL L V Y
Sbjct: 257 EGLLLKSVRY 266
>gi|84503354|ref|ZP_01001423.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597]
gi|84388264|gb|EAQ01215.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597]
Length = 255
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A + + ++A R A P PP+GL LV VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGRWPPSRVAEALEARDRAACGPVCPPQGLYLVGVGY 249
Query: 240 TNFDP 244
+ DP
Sbjct: 250 PD-DP 253
>gi|317968841|ref|ZP_07970231.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0205]
Length = 289
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ VEL A+ FL MVR+++ LV +A + R APP+GLCL+
Sbjct: 192 LLEVELQASGFLYGMVRLVMGQLVAVGEGRLSLEAFSRRWRNQAREEVKEAAPPQGLCLL 251
Query: 236 DVGYTN 241
VGY +
Sbjct: 252 RVGYPS 257
>gi|350270491|ref|YP_004881799.1| tRNA pseudouridine synthase TruA [Oscillibacter valericigenes
Sjm18-20]
gi|348595333|dbj|BAK99293.1| tRNA pseudouridine synthase TruA [Oscillibacter valericigenes
Sjm18-20]
Length = 251
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
L R G + FA A R++G T+ + I C V+ G+ ++ ++
Sbjct: 139 FLNRAAGMFVGTHDFA----AVRSVGTETKSTV------RTIYYCEVSRGGD---LLELK 185
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+ FL MVR + T++ A + + +++ + R A P APP GL L + Y
Sbjct: 186 VCADGFLYNMVRAITGTVLYAAEGKFAPEDIPEILKSRDRSAAGPTAPPGGLYLTRLWY 244
>gi|168180502|ref|ZP_02615166.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
gi|182668817|gb|EDT80795.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
Length = 246
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
V+LV + FL KM+R+L TL+ + ++ A RR P AP +GL +
Sbjct: 183 VDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGLFMTS 242
Query: 237 VGY 239
V Y
Sbjct: 243 VDY 245
>gi|59712303|ref|YP_205079.1| tRNA pseudouridine synthase A [Vibrio fischeri ES114]
gi|197334265|ref|YP_002156517.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11]
gi|62901138|sp|Q5E455.1|TRUA_VIBF1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690294|sp|B5FFN7.1|TRUA_VIBFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|59480404|gb|AAW86191.1| pseudouridylate synthase I [Vibrio fischeri ES114]
gi|197315755|gb|ACH65202.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11]
Length = 262
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG+ + +++ AN F+ MVR + +L+ + + L++A R+
Sbjct: 169 LMHLKVTRHGD---FIVIDIKANAFVHHMVRNITGSLIEVGKGKQKPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|407692022|ref|YP_006816811.1| tRNA pseudouridine synthase A [Actinobacillus suis H91-0380]
gi|407388079|gb|AFU18572.1| tRNA pseudouridine synthase A [Actinobacillus suis H91-0380]
Length = 262
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ IP
Sbjct: 241 VHY----PEHFGIP 250
>gi|386820727|ref|ZP_10107943.1| pseudouridylate synthase I [Joostella marina DSM 19592]
gi|386425833|gb|EIJ39663.1| pseudouridylate synthase I [Joostella marina DSM 19592]
Length = 250
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 122 LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVEL 181
+ + +LL+YK F +K++ T+ Y A C EG +++ +
Sbjct: 137 MNKAAAELLNYKDFQCFSKSN------TDVKTYICDVKRAAWIC------EG-ELLVFHI 183
Query: 182 VANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
A+RFLR MVR +V TL+ + + +++ + R P GL L +V Y N
Sbjct: 184 TADRFLRNMVRAIVGTLLDVGIGKISLEEVTEIIKSKDRSNAGASVPAHGLYLTEVVYPN 243
>gi|354558482|ref|ZP_08977737.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
gi|353546960|gb|EHC16407.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
Length = 265
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 64/231 (27%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSEV--EV 73
A NS P IR++ V+ FH +SA W+RY Y P+ D R S+ + V
Sbjct: 80 AFNSLLPRDIRILEAHTVAEEFHARYSACWKRYDYKIDNRPIADVFTRLYSLHEPIPLRV 139
Query: 74 ENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYK 133
E K++ E N G S RN +CR+ + EG +L
Sbjct: 140 EKM-------KRAARLLEGKHNFKAFSSAGGVSKTFERNLYVCRI-----QEEGGIL--- 184
Query: 134 TFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRV 193
++ C + + FL MVR+
Sbjct: 185 -----------------------------------------QITC---IGDGFLYNMVRI 200
Query: 194 LVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDP 244
+V TL+ + + ++ + R+ A GL L V Y P
Sbjct: 201 IVGTLINVGKGWLQPEDIPDILQSMDRKRAGITARARGLTLSYVHYGEESP 251
>gi|416891846|ref|ZP_11923393.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
gi|347815394|gb|EGY32034.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
Length = 261
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + ++ AN F+ MVR +V +L+ + L L+ R AP A PEGL L
Sbjct: 179 QYIIADIQANAFVHHMVRNIVGSLIEVGCGNQSVEWLAWLLAQKDRTLAAPTAKPEGLYL 238
Query: 235 VDVGY 239
V+V Y
Sbjct: 239 VNVLY 243
>gi|60680398|ref|YP_210542.1| tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343]
gi|265765551|ref|ZP_06093826.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16]
gi|336408434|ref|ZP_08588927.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_56FAA]
gi|423269188|ref|ZP_17248160.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL05T00C42]
gi|423273248|ref|ZP_17252195.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL05T12C13]
gi|81316532|sp|Q5LGZ6.1|TRUA_BACFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|60491832|emb|CAH06590.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis NCTC
9343]
gi|263254935|gb|EEZ26369.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16]
gi|335937912|gb|EGM99808.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_56FAA]
gi|392701610|gb|EIY94767.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL05T00C42]
gi|392708280|gb|EIZ01388.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL05T12C13]
Length = 252
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ E + A+RFLR
Sbjct: 148 LFHYSDFTSFSKLHTDVKTNI-CKIMHAEWTQ-----------EDEYTWVFTIQADRFLR 195
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D K+++ R AP L LV+V Y
Sbjct: 196 NMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNALFLVNVEY 246
>gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
Length = 249
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 77/229 (33%), Gaps = 54/229 (23%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
V I A+NS P I VI +V FH FSA + Y Y SI +
Sbjct: 75 VPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRY------------SIYNH 122
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
+ H + HE PR I + Q L G
Sbjct: 123 RVMSPLHRL------------------------YAYHE-PRPLDIEAMRQAAQYLLG--- 154
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
D K+ + G P + + E + P+ + + L N FL M
Sbjct: 155 -----THDFKSFQAQGTPVKDTVRTIYRAELVSEPPL---------IHLYLRGNGFLYNM 200
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VR++ TL+ + +++A R PP GLCL++V Y
Sbjct: 201 VRIITGTLLDVGKGKKSPPEMKSIIEARNRTRAGTTVPPHGLCLMEVEY 249
>gi|375087869|ref|ZP_09734214.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
gi|374563579|gb|EHR34891.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
Length = 260
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
FL M+R++V TL+ + D DA+ ++ A R+A + A P GL +V+V Y +
Sbjct: 192 FLYNMIRIMVGTLLDVSDGKLDPDAIPDILQAKERQAASRTASPVGLKMVEVYYKD 247
>gi|430743910|ref|YP_007203039.1| pseudouridylate synthase I [Singulisphaera acidiphila DSM 18658]
gi|430015630|gb|AGA27344.1| pseudouridylate synthase I [Singulisphaera acidiphila DSM 18658]
Length = 255
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ VE+ A+ FL MVR + TL+ E + + + A RR P APP+GL L+
Sbjct: 182 VWVEVEADGFLYNMVRSITGTLLLVGTGRWAETRVQEALVAEDRREAGPTAPPQGLFLLV 241
Query: 237 VGYTNFD 243
V Y + D
Sbjct: 242 VRYGHPD 248
>gi|255526720|ref|ZP_05393623.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|255509607|gb|EET85944.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
Length = 249
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
+HG ++ +E+ N FL MVR++V TL+ + K++ R P A
Sbjct: 183 EHG----MIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAA 238
Query: 229 PEGLCLVDVGY 239
+GLCL D+ Y
Sbjct: 239 AKGLCLKDIQY 249
>gi|398799199|ref|ZP_10558491.1| pseudouridylate synthase I [Pantoea sp. GM01]
gi|398099067|gb|EJL89339.1| pseudouridylate synthase I [Pantoea sp. GM01]
Length = 268
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V+ HG + +++ AN F+ MVR +V +L+ E+ + L+ A R+
Sbjct: 176 VMHLNVSRHG---PYVVIDIKANAFVHHMVRNIVGSLMEIGTGNQPEEWMATLLAAKDRK 232
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
A A EGL LV V Y ++F PQ +L P
Sbjct: 233 LAAATAKAEGLYLVAVDYPSHFALPQPALGP 263
>gi|387906808|ref|YP_006337143.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blaberus
giganteus)]
gi|387581700|gb|AFJ90478.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blaberus
giganteus)]
Length = 255
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 128 KLLSYK---TFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVAN 184
KL+ YK +F + K +N C IYHA E ++C + AN
Sbjct: 142 KLMEYKDFSSFCKKKKKRKNEEENNICQIYHA------------SWSENNNILCFTIEAN 189
Query: 185 RFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
RFLR MVR ++ L+ + +K+++ P GL L ++ YT
Sbjct: 190 RFLRSMVRAIIGRLIDVGRNKISINEFVKIIELRDSNFCKFIVPACGLFLTNILYT 245
>gi|423686468|ref|ZP_17661276.1| tRNA pseudouridine synthase A [Vibrio fischeri SR5]
gi|371494536|gb|EHN70134.1| tRNA pseudouridine synthase A [Vibrio fischeri SR5]
Length = 262
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG+ + +++ AN F+ MVR + +L+ + + L++A R+
Sbjct: 169 LMHLKVTRHGD---FIVIDIKANAFVHHMVRNITGSLIEVGKGKQKPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|350532040|ref|ZP_08910981.1| tRNA pseudouridine synthase A [Vibrio rotiferianus DAT722]
Length = 264
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 154 YHARATEAILPCP------VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++
Sbjct: 155 FRAAHCQSLSPCRNMMHLNVTRHGD---YVVIDIKANAFVHHMVRNITGSLIKVGRGEEK 211
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + L++A R+ A EGL LVDV Y
Sbjct: 212 PEWIKSLLEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|416076513|ref|ZP_11585550.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344442|ref|ZP_21152705.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348004801|gb|EGY45294.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443544119|gb|ELT54179.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 261
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 58/232 (25%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V FH FSA RRY YI N + S +
Sbjct: 77 GVNANLPDDIAVRWAKVVEDDFHARFSATARRYRYILYCN-------KLRSAI------- 122
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 123 ---LPQGVTHCHLELDHQLMHDAGQ------------------------ALLGENDFSSF 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T +G+ ++ V++ AN F+ MVR +V +L
Sbjct: 156 RAAQCQSNTPWRN-VHHLNVTR-----------QGQYII-VDIQANAFVHHMVRNIVGSL 202
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSLIP 250
+ + L++ R AP A PEGL LV+V Y P N +P
Sbjct: 203 IEVGCCNQPVKWMKWLLEQKDRALAAPTAKPEGLYLVNVIY----PDNFNLP 250
>gi|260431135|ref|ZP_05785106.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414963|gb|EEX08222.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
Length = 255
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
A FL VR V TL R A + ++AT R A P PP+GL L VGY +
Sbjct: 193 ARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPPQGLYLARVGYPD 251
>gi|409099371|ref|ZP_11219395.1| tRNA pseudouridine synthase A [Pedobacter agri PB92]
Length = 250
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 121 LLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
L+ + LL Y F+ +K++ T+ F + + +A+ + +G V +E
Sbjct: 141 LMNQAAALLLDYTDFSCFSKSN------TQTFTNNCKIVKAVF-----EETDGGLVFTIE 189
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+RFLR MVR ++ TLVR + + ++++ R P GL LV V Y
Sbjct: 190 --ADRFLRNMVRAVMGTLVRVGKYEINLEEFKAVIESKNRSKAGQSVPACGLYLVKVEY 246
>gi|333376838|ref|ZP_08468574.1| tRNA pseudouridine synthase A [Dysgonomonas mossii DSM 22836]
gi|332886051|gb|EGK06295.1| tRNA pseudouridine synthase A [Dysgonomonas mossii DSM 22836]
Length = 250
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN 241
ANRFLR MVR +V TL+ D + ++++A R P L L ++ Y N
Sbjct: 187 ANRFLRNMVRSIVGTLLEAGKGKIDSGEMRRIIEAKNRGEAGISVPGHALFLEEIEYNN 245
>gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus]
Length = 393
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI D INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 121 VVSLKVWLID----DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF 176
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPR 111
++ D +V+ E++ S +Q N GCY+ N F S + PR
Sbjct: 177 AHK----DRDVQDESYRLSAETLQQVNRLLGCYKGTHNFH-----NFTSQKGPR 221
>gi|113476553|ref|YP_722614.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101]
gi|110167601|gb|ABG52141.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101]
Length = 272
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 154 YHARATEAILPCPVNDHGEGRKVMC--------VELVANRFLRKMVRVLVATLVREAAAG 205
+H A + C + + ++VMC +E+ A+ FL M+R+LV L++ G
Sbjct: 159 HHLAAFQRAGSCRPHSWVDVQEVMCERKGPFIYIEVQASGFLYGMMRLLVGLLIQ---VG 215
Query: 206 ADEDALLKLMDATC---RRATAPPAPPEGLCLVDVGYTNF 242
+E +L D R AP GLCL+ VGY F
Sbjct: 216 TEELSLESFTDIWVNQRRDIVKHSAPASGLCLLRVGYPEF 255
>gi|86609047|ref|YP_477809.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557589|gb|ABD02546.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 285
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 176 VMCVELVANRFLRKMVRVLVATLV---REAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
++ +E+ A+ FL +M+R+LV +L R + A L + D + R T APP+GL
Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGQLSPAQFVHLWQHNDWSQMR-TRYSAPPQGL 241
Query: 233 CLVDVGYTNFDP 244
CL DVGY DP
Sbjct: 242 CLTDVGYAA-DP 252
>gi|296187338|ref|ZP_06855733.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|296047860|gb|EFG87299.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
Length = 141
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
+HG ++ +E+ N FL MVR++V TL+ + K++ R P A
Sbjct: 75 EHG----MIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAA 130
Query: 229 PEGLCLVDVGY 239
+GLCL D+ Y
Sbjct: 131 AKGLCLKDIQY 141
>gi|320107224|ref|YP_004182814.1| pseudouridine synthase I TruA [Terriglobus saanensis SP1PR4]
gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Terriglobus saanensis SP1PR4]
Length = 287
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ ++ + FL MVR LV T V A + K++ A R A P APP+GL L++
Sbjct: 213 LSYQVRGSGFLHHMVRNLVGTCVDVGAGRILATEMEKILVAKNRGAAGPTAPPQGLSLLE 272
Query: 237 VGYTNFD 243
V Y + D
Sbjct: 273 VEYGSED 279
>gi|260062032|ref|YP_003195112.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501]
gi|88783594|gb|EAR14765.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501]
Length = 253
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG V + A+RFLR MVR +V TL+ D + + ++ + R P +G
Sbjct: 174 EGDGVWVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAKG 233
Query: 232 LCLVDVGY 239
L L + Y
Sbjct: 234 LYLTRITY 241
>gi|384917179|ref|ZP_10017310.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
gi|384525438|emb|CCG93183.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
Length = 257
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 55/225 (24%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
++ A+N P IRV+ + VS+ FH F A + Y Y + ND +D
Sbjct: 79 LQRALNYYLPETIRVLHIRVVSKEFHARFHAISKTYQY-WIWND-----PVMDPFYLWRA 132
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+H + QS N L + F S F +
Sbjct: 133 WHIPRQLDLQSM----NEAATLFVGKKDFASFVSSPGFVL-------------------- 168
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV-ANRFLRKMVRVL 194
+DT + C G+ +C+ + AN FL +MVR +
Sbjct: 169 -KDT-------------------IRTVFDCGFTVQGQ----LCLFTIKANGFLYRMVRNI 204
Query: 195 VATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
V LV+ D + L + ++ R+ + APP GL L+ V Y
Sbjct: 205 VGALVKIGLGRLDLEKLKDIFESKNRKLSPASAPPWGLYLLKVDY 249
>gi|330998477|ref|ZP_08322301.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT
11841]
gi|329568583|gb|EGG50388.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT
11841]
Length = 256
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 104 FGSHEKPRNFTICRVNLLLQ-----RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARA 158
FG R ++ CR+ +L L Y F +K + + C I AR
Sbjct: 122 FGKSPFLRAYS-CRLYQMLDFGKMNEAAAALFDYTDFTSFSKVNTDT-KTNNCRIMQARW 179
Query: 159 TEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDAT 218
TE + P GE R E+ A+RFLR MVR +V TLV + +++
Sbjct: 180 TE-LAP------GEWR----FEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGK 228
Query: 219 CRRATAPPAPPEGLCLVDVGY 239
R P L LVDV Y
Sbjct: 229 DRCRAGESMPGNALFLVDVAY 249
>gi|238917621|ref|YP_002931138.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
gi|238872981|gb|ACR72691.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
Length = 249
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 64/235 (27%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGE---NREQS- 66
+K DI D +N P I V V S FH ++A+ + Y Y + D + NR+
Sbjct: 71 MKEDDICDYMNRYLPEDICVQEVRIASDRFHSRYNAQGKTYCYTCYVGDKKPVFNRKYVN 130
Query: 67 -IDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRL 125
I+ +++VE + ++ + D F + K + T+ + + L
Sbjct: 131 IIEGKLDVEAMKKAADILTGEH------------DYASFCGNPKMKKSTVREIYSIDVSL 178
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
+G L+ + HG G
Sbjct: 179 KGSFLN-----------------------------------LTYHGSG------------ 191
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
FL+ MVR+L TL+ +++ +L++ R AP +GLCL+ V Y+
Sbjct: 192 FLQYMVRILSGTLLEVGQGKRTPESMYELLEERNRSLAGATAPAKGLCLLKVDYS 246
>gi|38639411|gb|AAR25833.1| tRNA pseudouridine synthase A [Buchnera aphidicola (Tetraneura
caerulescens)]
Length = 107
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E+ AN FL KMVR +V +L+ + + ++ + R+ + P A GL LV
Sbjct: 30 VIIEIEANAFLYKMVRNIVGSLIEVGLKRKNVSWIDTILKSKNRKLSGPTASANGLYLVY 89
Query: 237 VGYTNFDPQNSLIP 250
V Y P N IP
Sbjct: 90 VDY----PSNFNIP 99
>gi|338733784|ref|YP_004672257.1| tRNA pseudouridine synthase A 1 [Simkania negevensis Z]
gi|336483167|emb|CCB89766.1| tRNA pseudouridine synthase A 1 [Simkania negevensis Z]
Length = 245
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 35/68 (51%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG +E N FL KMVR LV TLV A L L++A RR PPAPP+G
Sbjct: 177 EGDGKFRLEFTGNGFLYKMVRNLVGTLVYVARGKLSLKELSDLIEAKNRRLAPPPAPPQG 236
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 237 LFLTSVEY 244
>gi|269962161|ref|ZP_06176515.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3]
gi|424047312|ref|ZP_17784872.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-03]
gi|269833245|gb|EEZ87350.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3]
gi|408884156|gb|EKM22910.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-03]
Length = 264
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG+ + +++ AN F+ MVR + +L++ + + L++A R+
Sbjct: 169 LMHLNVTRHGD---YIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|424041748|ref|ZP_17779617.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-02]
gi|408890382|gb|EKM28511.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-02]
Length = 264
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG+ + +++ AN F+ MVR + +L++ + + L++A R+
Sbjct: 169 LMHLNVTRHGD---YIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|367470187|ref|ZP_09469903.1| tRNA pseudouridine synthase A [Patulibacter sp. I11]
gi|365814765|gb|EHN09947.1| tRNA pseudouridine synthase A [Patulibacter sp. I11]
Length = 259
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+ F+R M R+LV T++ AA + L++ R A PP+GL L +GY
Sbjct: 183 ADAFMRHMNRILVGTMLEVAAGRRSLEGFAALLEGAPRSAAGVTLPPQGLHLAGIGY 239
>gi|153939803|ref|YP_001391236.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
gi|152935699|gb|ABS41197.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
Length = 246
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + ++ A RR P AP +GL + V Y
Sbjct: 192 FLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGLFMTSVDY 245
>gi|58584685|ref|YP_198258.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419001|gb|AAW71016.1| Pseudouridylate synthase (tRNA psi55) [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 249
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ A FL VR++V TLV + + +L +++ R A APP GL L
Sbjct: 187 IYIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLYLAK 246
Query: 237 VGY 239
+ Y
Sbjct: 247 IDY 249
>gi|114763999|ref|ZP_01443240.1| tRNA pseudouridine synthase A [Pelagibaca bermudensis HTCC2601]
gi|114543591|gb|EAU46605.1| tRNA pseudouridine synthase A [Roseovarius sp. HTCC2601]
Length = 255
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 168 NDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPA 227
D G G + L A FL VR +V TL R A + + ++A R A P
Sbjct: 179 TDTGAGTEFR-FHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVC 237
Query: 228 PPEGLCLVDVGYTNFDP 244
PP+GL L+ VGY + DP
Sbjct: 238 PPDGLYLMGVGYAD-DP 253
>gi|354605263|ref|ZP_09023252.1| tRNA pseudouridine synthase A [Alistipes indistinctus YIT 12060]
gi|353347842|gb|EHB92118.1| tRNA pseudouridine synthase A [Alistipes indistinctus YIT 12060]
Length = 251
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+RFLR MVR +V TL+ + ++D R APP+GL L V Y
Sbjct: 184 VAADRFLRNMVRAIVGTLLDVGRGKLSVEGFRAVIDGRDRALAGTSAPPQGLFLTRVDY 242
>gi|329900760|ref|ZP_08272580.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480]
gi|327549402|gb|EGF33969.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480]
Length = 267
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ ++L AN FL MVR LV +L+ D L +L+ R AP P+GL L
Sbjct: 187 LIVIKLHANAFLHHMVRNLVGSLIYVGTGRQPVDWLSELILQKDRHLAAPTFSPDGLYLA 246
Query: 236 DVGYTNFDPQNSL 248
+ Y DP+ L
Sbjct: 247 KIDY---DPKWEL 256
>gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase ACD [Thermotoga neapolitana DSM 4359]
gi|254764873|sp|B9K8Q0.1|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359]
Length = 245
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G+ ++ + + FLR+MVR +VA LV+ + + L ++++A R A A AP GL
Sbjct: 179 GKDMILIRVEGRSFLRRMVRNIVAALVKVGLRQWEPEKLKEVLEARDRSAAAGTAPAHGL 238
Query: 233 CLVDV 237
V
Sbjct: 239 YFYKV 243
>gi|42520874|ref|NP_966789.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|51316700|sp|Q73G93.1|TRUA_WOLPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42410614|gb|AAS14723.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 245
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+++ A FL VR++V TLV + +L +++ R A APP GL LV +
Sbjct: 185 IKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILNQCKRSAAGVTAPPFGLYLVKID 244
Query: 239 Y 239
Y
Sbjct: 245 Y 245
>gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus]
gi|182676393|sp|Q4KM92.2|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus]
gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus]
Length = 423
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI D INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 151 VVSLKVWLID----DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF 206
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E++ S +Q N GCY+ N F S + PR + R
Sbjct: 207 AHK----DRDVQDESYRLSAETLQQVNRLLGCYKGTHNFH-----NFTSQKGPREPSARR 257
Query: 118 VNL 120
L
Sbjct: 258 YIL 260
>gi|317472004|ref|ZP_07931336.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA]
gi|316900408|gb|EFV22390.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA]
Length = 252
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 146 GPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAG 205
G PT+ + I C V +G + + + + N FL MVR++ TL+
Sbjct: 160 GSPTKTTV------RTIYECEVRQNG---RYITMRVTGNGFLYNMVRMMAGTLISIGRGR 210
Query: 206 ADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D + + +L R P AP +GL L+++ Y
Sbjct: 211 RDPEWVRELFLHPKRGKAGPNAPAKGLTLINIHY 244
>gi|229830208|ref|ZP_04456277.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM
14600]
gi|229791506|gb|EEP27620.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM
14600]
Length = 267
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + L + FL MVR++ TL+ A A +++D R P AP GL V
Sbjct: 179 LITIRLCGDGFLYNMVRIIAGTLIEVGAGITSPRAFQQILDGMNRELAGPTAPAHGLTQV 238
Query: 236 DVGY 239
+ Y
Sbjct: 239 GLHY 242
>gi|226949212|ref|YP_002804303.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
gi|226843950|gb|ACO86616.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
Length = 246
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + ++ A RR P AP +GL + V Y
Sbjct: 192 FLHKMIRILTGTLIEVGLHNLKSVDVKNILTAEDRRKAGPTAPSQGLFMTSVDY 245
>gi|91789465|ref|YP_550417.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666]
gi|123059533|sp|Q126M3.1|TRUA_POLSJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91698690|gb|ABE45519.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666]
Length = 264
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G G K E AN FL M+R ++ LV + LL +M A R A AP P
Sbjct: 179 GTGSKYWHFEFEANAFLHHMIRNIMGCLVAIGQGSHEPGWLLDVMAARSRDAAAPTFSPN 238
Query: 231 GLCLV 235
GL +
Sbjct: 239 GLYFL 243
>gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
gi|123766692|sp|Q2RFT1.1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
Length = 246
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+++A+ FL MVR++V TLV +A+ ++ A R P AP GLCL V Y
Sbjct: 187 DVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSREKAGPTAPARGLCLERVEY 246
>gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
gi|121691685|sp|Q12VJ7.1|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
Length = 275
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+++ AN FL MVR +VA L+ + DE+ L ++D PA GL L+DV
Sbjct: 168 IDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGYGLVLMDVN 227
Query: 239 Y 239
Y
Sbjct: 228 Y 228
>gi|424033585|ref|ZP_17772999.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-01]
gi|408874449|gb|EKM13620.1| tRNA pseudouridine synthase A [Vibrio cholerae HENC-01]
Length = 264
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG+ + +++ AN F+ MVR + +L++ + + L++A R+
Sbjct: 169 LMHLNVTRHGD---YIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|284036658|ref|YP_003386588.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74]
gi|283815951|gb|ADB37789.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74]
Length = 252
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 177 MCVELVANRFLRKMVRVLVATLV---REAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+ + ANRFL MVR +V TL+ +E + D + ++ D R+ AP EGL
Sbjct: 179 LVFHIKANRFLHGMVRAIVGTLLAVGQERLSVTDFEQIILDHD---RKRAGRAAPAEGLS 235
Query: 234 LVDVGY 239
LV+VGY
Sbjct: 236 LVEVGY 241
>gi|374598478|ref|ZP_09671480.1| tRNA pseudouridine synthase A [Myroides odoratus DSM 2801]
gi|423323282|ref|ZP_17301124.1| tRNA pseudouridine synthase A [Myroides odoratimimus CIP 103059]
gi|373909948|gb|EHQ41797.1| tRNA pseudouridine synthase A [Myroides odoratus DSM 2801]
gi|404609607|gb|EKB08974.1| tRNA pseudouridine synthase A [Myroides odoratimimus CIP 103059]
Length = 245
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + ANRFLR MVR +V TL+ D ++++ R P +GL L
Sbjct: 180 LIFTVSANRFLRNMVRAIVGTLINVGLHKITLDDFRAIIESKDRGKAGFSVPGKGLFLTK 239
Query: 237 VGY 239
VGY
Sbjct: 240 VGY 242
>gi|153853813|ref|ZP_01995169.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814]
gi|149753563|gb|EDM63494.1| tRNA pseudouridine synthase A [Dorea longicatena DSM 13814]
Length = 246
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + + N FL MVR++ L+R + + +++DA + APP GL L+
Sbjct: 183 IVLRITGNGFLYNMVRIIAGVLIRVGRGFYTPEKVKEILDAKVHTSEGATAPPNGLVLMK 242
Query: 237 VGY 239
+ Y
Sbjct: 243 IDY 245
>gi|126731534|ref|ZP_01747340.1| tRNA pseudouridine synthase A [Sagittula stellata E-37]
gi|126708070|gb|EBA07130.1| tRNA pseudouridine synthase A [Sagittula stellata E-37]
Length = 249
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR V TL R A D + ++A R A P PP+GL L VGY
Sbjct: 184 LRARSFLHNQVRSFVGTLERVGAGAWAPDRVGAALEARDRAACGPVCPPQGLYLTGVGY 242
>gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC
25986]
gi|133775591|gb|EBA39411.1| tRNA pseudouridine synthase A [Collinsella aerofaciens ATCC 25986]
Length = 274
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
LL + F K + +G PT + A + G ++ + N FL
Sbjct: 163 LLGEQDFKSFCKVASAVGKPTHRCVMRAEFGHEV--------AFGEDILTFTIEGNAFLH 214
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSL 248
MVR +V TLV + + +++DA R A P AP GL + V Y DP +
Sbjct: 215 SMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAAGPTAPACGLTFMGVDY---DPAELV 271
Query: 249 I 249
+
Sbjct: 272 V 272
>gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
Length = 261
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + +L+ D L+ L++ R A A P GL LV+
Sbjct: 181 IIIDIKANAFLHHMVRNIAGSLIEIGQDNQKVDWLMTLLEYKNRARAAATAKPGGLYLVE 240
Query: 237 VGY 239
V Y
Sbjct: 241 VDY 243
>gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo
sapiens]
gi|114152895|sp|Q9Y606.3|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens]
gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens]
gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct]
gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 427
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 155 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF 210
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E + S +Q N CY+ N F S + P++ + CR
Sbjct: 211 AHK----DRDVQDETYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACR 261
Query: 118 VNL 120
L
Sbjct: 262 YIL 264
>gi|372270858|ref|ZP_09506906.1| tRNA pseudouridine synthase A [Marinobacterium stanieri S30]
Length = 280
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ +++ AN FL M+R + L+ A + ++++A RR APP+GL
Sbjct: 196 QLVVIDVSANAFLHHMIRNIAGVLMSVGAGERPTEWAREVLEARDRRQGGVTAPPDGLYF 255
Query: 235 VDVGYTNFD--PQNSLIP 250
VDV Y PQ L P
Sbjct: 256 VDVRYPELFNLPQAPLGP 273
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 4 LDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLN 58
L T K+++P + + +N P IRVI +V F F ++R Y Y FPLN
Sbjct: 61 LRTRAKNLEPYNYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLN 115
>gi|163784111|ref|ZP_02179057.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1]
gi|159880615|gb|EDP74173.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1]
Length = 175
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ E+ A+ FLR MVR +VA +V D +++D+ APPEGL L
Sbjct: 105 LLKFEISASHFLRYMVRKIVAHVVHVGTGRITIDTFKQILDSKDPARALFIAPPEGLYLK 164
Query: 236 DVGYTNFDPQ 245
+V Y D Q
Sbjct: 165 EVYYLPEDEQ 174
>gi|421838819|ref|ZP_16272565.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001627]
gi|409737107|gb|EKN38368.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001627]
Length = 151
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + +++A RR P AP +GL + V Y
Sbjct: 97 FLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGLFMTSVDY 150
>gi|402851218|ref|ZP_10899388.1| tRNA pseudouridine synthase A [Rhodovulum sp. PH10]
gi|402498510|gb|EJW10252.1| tRNA pseudouridine synthase A [Rhodovulum sp. PH10]
Length = 260
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR +V TLV+ E + + ++A R+A P APP+GL LV V Y
Sbjct: 204 ARSFLHHQVRSMVGTLVQVGQGRWPEHFVGRALEACDRKACGPVAPPDGLYLVRVDY 260
>gi|423258781|ref|ZP_17239704.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL07T00C01]
gi|423264247|ref|ZP_17243250.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL07T12C05]
gi|387776361|gb|EIK38461.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL07T00C01]
gi|392706513|gb|EIY99636.1| tRNA pseudouridine synthase A [Bacteroides fragilis CL07T12C05]
Length = 252
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ E + A+RFLR
Sbjct: 148 LFHYSDFTSFSKLHTDVKTNI-CKIMHAEWTQ-----------EDEYTWVFTIQADRFLR 195
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D K+++ R AP L LV+V Y
Sbjct: 196 NMVRAIVGTLLEVGRGKLSVDDFRKIIELQNRCKAGTSAPGNALFLVNVEY 246
>gi|365850526|ref|ZP_09390989.1| tRNA pseudouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364567192|gb|EHM44864.1| tRNA pseudouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 270
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249
Query: 237 VGYTN-FD-PQNSLIP 250
V Y + FD P+ + P
Sbjct: 250 VDYPDRFDLPKTPMGP 265
>gi|374295486|ref|YP_005045677.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
gi|359824980|gb|AEV67753.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
Length = 245
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL M R++ TL+ A D D++ +++ R P AP GL L DV Y
Sbjct: 192 FLYNMARIMAGTLIEVGAGRMDADSIPEILARKDRSLAGPKAPCSGLILYDVEY 245
>gi|284042832|ref|YP_003393172.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684]
gi|283947053|gb|ADB49797.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684]
Length = 261
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 148 PTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
PTE H R ++ G+ ++ + A+ F+R M RVLV T++ A
Sbjct: 158 PTET--DHVRFQREVMHASWRADGD---MLQFSIEADAFMRNMNRVLVGTMLEVAGERRS 212
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
+ L+D R APP GL L VGY
Sbjct: 213 VEQFTALLDGAPRDRAGVTAPPHGLYLAGVGYDGL 247
>gi|354610208|ref|ZP_09028164.1| tRNA pseudouridine synthase A [Halobacterium sp. DL1]
gi|353195028|gb|EHB60530.1| tRNA pseudouridine synthase A [Halobacterium sp. DL1]
Length = 264
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLM--DATCRRATAPPAPPEGLCL 234
+ + L A F R++VR +V +LVRE AAGA D + +L+ + RA PPA P L L
Sbjct: 162 LVLTLRAEGFCRELVRRVV-SLVREVAAGASFDRIDQLLGSEPVDGRAGVPPADPHPLVL 220
Query: 235 VDVGY 239
DV Y
Sbjct: 221 HDVDY 225
>gi|206580474|ref|YP_002237289.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342]
gi|288934225|ref|YP_003438284.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22]
gi|290508428|ref|ZP_06547799.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55]
gi|238057733|sp|B5XNR9.1|TRUA_KLEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|206569532|gb|ACI11308.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342]
gi|288888954|gb|ADC57272.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22]
gi|289777822|gb|EFD85819.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55]
Length = 270
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|89093241|ref|ZP_01166191.1| tRNA-pseudouridine synthase I [Neptuniibacter caesariensis]
gi|89082537|gb|EAR61759.1| tRNA-pseudouridine synthase I [Neptuniibacter caesariensis]
Length = 283
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 168 NDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPA 227
N + EGR V+ +++ AN FL M+R L+ A+ +++DA RR A
Sbjct: 196 NVYREGRLVI-LDVRANAFLHHMIRNFAGVLMTIGCGEAEPIWAKEVLDARDRRQGGVTA 254
Query: 228 PPEGLCLVDVGY-TNFD-PQNSLIP 250
PP GL VD Y FD P++ + P
Sbjct: 255 PPFGLYFVDAKYPEEFDLPKSQIGP 279
>gi|409197154|ref|ZP_11225817.1| tRNA pseudouridine synthase A [Marinilabilia salmonicolor JCM
21150]
Length = 252
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ A+RFLR MVR +V TL+ D ++++A R APP+ L L + Y
Sbjct: 185 ISADRFLRNMVRAVVGTLLEVGRKKLSVDDFCEIIEAKDRGGAGTSAPPQALFLTHIEY 243
>gi|390451063|ref|ZP_10236645.1| tRNA pseudouridine synthase A [Nitratireductor aquibiodomus RA22]
gi|389661520|gb|EIM73129.1| tRNA pseudouridine synthase A [Nitratireductor aquibiodomus RA22]
Length = 247
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR TL R G D + ++A R+A P APP GL L V Y
Sbjct: 191 ARSFLHNQVRSFAGTLKRVGEGGWSADDVTTALEARDRKACGPVAPPHGLYLTRVDY 247
>gi|383785096|ref|YP_005469666.1| pseudouridylate synthase [Leptospirillum ferrooxidans C2-3]
gi|383084009|dbj|BAM07536.1| putative pseudouridylate synthase [Leptospirillum ferrooxidans
C2-3]
Length = 257
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLM--DATCRRATAPPAPPEGLCLVD 236
V + FL M+R ++ T+V A + L KL+ D+ PAPPEGL L+
Sbjct: 188 VWITGKGFLHMMIRFIIGTIVEVANGKRTLEELEKLLQSDSPVPVKCLRPAPPEGLSLIR 247
Query: 237 VGYTNFDP 244
V Y DP
Sbjct: 248 VLYGKNDP 255
>gi|372280015|ref|ZP_09516051.1| tRNA pseudouridine synthase A [Oceanicola sp. S124]
Length = 255
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R + + + ++A R A P PPEGL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGTGAWAPEQVREALEARDRAACGPVCPPEGLYLAGVGY 249
Query: 240 TNFDP 244
+ DP
Sbjct: 250 PD-DP 253
>gi|325191328|emb|CCA26111.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14]
Length = 289
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 132 YKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMV 191
Y +F+ + ++ G T C ++ T V +HG+ + + + + +RFL KMV
Sbjct: 183 YASFSGERDDAKE-GTDTFCTLHALDITMDQPRQEVMNHGQ-QSCIRIRMSGDRFLYKMV 240
Query: 192 RVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
R +V TLV D ++ ++ A RR AP +GL LV V ++
Sbjct: 241 RNIVGTLVDVGLGKIDALSIPDILLARDRRQAGQGAPAKGLTLVRVYFS 289
>gi|319787538|ref|YP_004147013.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1]
gi|317466050|gb|ADV27782.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1]
Length = 257
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +E+ AN FL MVR +V +L+ A DE + +L+ R P A P+GL
Sbjct: 181 ETVSIEVQANAFLHHMVRNIVGSLLEVGAGARDEGWIARLLAGRDRTLAGPTAAPQGLVF 240
Query: 235 V 235
+
Sbjct: 241 L 241
>gi|291279383|ref|YP_003496218.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1]
gi|290754085|dbj|BAI80462.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1]
Length = 244
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR +V T++ + + + + +++ + R+ APP+GL L +V
Sbjct: 184 IEINANGFLHNMVRNIVGTVIDLYSDNSSPEKIEEILKSKDRKNAGRTAPPQGLYLKEVF 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
>gi|218960843|ref|YP_001740618.1| putative pseudouridylate synthase I [Candidatus Cloacamonas
acidaminovorans]
gi|167729500|emb|CAO80411.1| putative pseudouridylate synthase I [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 274
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC-RRATAPPAPPE 230
E + + A+RFL MVR +V TL + + +L++++ C R+ AP
Sbjct: 178 ETERYFVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPAS 237
Query: 231 GLCLVDVGY 239
GL L+DV Y
Sbjct: 238 GLYLMDVKY 246
>gi|162147913|ref|YP_001602374.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
gi|209542530|ref|YP_002274759.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
gi|161786490|emb|CAP56072.1| putative tRNA pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530207|gb|ACI50144.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
Length = 258
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +E A FL VR +V TL D + + A RRA P APP+GL L
Sbjct: 191 IVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDGLYLTG 250
Query: 237 VGY 239
VGY
Sbjct: 251 VGY 253
>gi|440231754|ref|YP_007345547.1| pseudouridylate synthase I [Serratia marcescens FGI94]
gi|440053459|gb|AGB83362.1| pseudouridylate synthase I [Serratia marcescens FGI94]
Length = 270
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V HG+ + V++ AN F+ MVR +V +L+ DE+ + +L+ R A
Sbjct: 182 VTRHGQ---YIVVDIKANAFVHHMVRNIVGSLLEIGCGNQDENWMAQLLALKDRNLAAAT 238
Query: 227 APPEGLCLVDVGY 239
A EGL LV V Y
Sbjct: 239 ARAEGLYLVSVDY 251
>gi|239623391|ref|ZP_04666422.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522357|gb|EEQ62223.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 247
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + N FL MVR++ TL+ + + +++A RRA P AP GL L+
Sbjct: 182 MIGIRVTGNGFLYNMVRIIAGTLMAVGMGQIAPEDMGAILEARDRRAAGPTAPARGLTLI 241
Query: 236 DVGY 239
+ Y
Sbjct: 242 QMEY 245
>gi|406677534|ref|ZP_11084716.1| tRNA pseudouridine synthase A [Aeromonas veronii AMC35]
gi|404624547|gb|EKB21381.1| tRNA pseudouridine synthase A [Aeromonas veronii AMC35]
Length = 269
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFP--------LNDG-ENREQSIDS 69
+NS P I V V QV FH FSA RRY Y+ L G + ++ID+
Sbjct: 77 GLNSNLPPDIAVRWVKQVDESFHARFSATARRYRYVIYNHNYRPAILGSGVSHYHETIDA 136
Query: 70 EVEVE---------NFHTSNNVGKQSNGCYENIENLLINDEGGF 104
E+ + +F T V QSN + N+ +L ++ +G +
Sbjct: 137 ELMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRQGPY 180
>gi|282601160|ref|ZP_05980960.2| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176]
gi|282570067|gb|EFB75602.1| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176]
Length = 249
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 155 HARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKL 214
H I C V+ G+ R V+ V A+ +L MVR+L TLV D++ L
Sbjct: 165 HGDTVRTISRCTVSRCGD-RFVITV--TADGYLYNMVRILAGTLVEAGLHKRTPDSIPAL 221
Query: 215 MDATCRRATAPPAPPEGLCLVDVGYTNF 242
+ + RR P P +GL L DV Y +
Sbjct: 222 LQSRDRRQAGPTLPAKGLFLEDVAYPDL 249
>gi|28898964|ref|NP_798569.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260365288|ref|ZP_05777845.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030]
gi|260878838|ref|ZP_05891193.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260896240|ref|ZP_05904736.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260899991|ref|ZP_05908386.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|417319306|ref|ZP_12105864.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329]
gi|433658273|ref|YP_007275652.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|31340461|sp|Q87MP1.1|TRUA_VIBPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|28807183|dbj|BAC60453.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|308088841|gb|EFO38536.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308094227|gb|EFO43922.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308107376|gb|EFO44916.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|308115414|gb|EFO52954.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030]
gi|328474496|gb|EGF45301.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329]
gi|432508961|gb|AGB10478.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 264
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 154 YHARATEAILPC------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++
Sbjct: 155 FRAAHCQSLSPCRNLMHLNVTRHGD---YVVIDIKANAFVHHMVRNITGSLIKVGRGEEK 211
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + L++A R+ A EGL LVDV Y
Sbjct: 212 PEWIKWLLEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens]
gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct]
gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct]
gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens]
gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 399
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 127 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF 182
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E + S +Q N CY+ N F S + P++ + CR
Sbjct: 183 AHK----DRDVQDETYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACR 233
Query: 118 VNLLL 122
L +
Sbjct: 234 YILEM 238
>gi|407782501|ref|ZP_11129713.1| tRNA pseudouridine synthase A [Oceanibaculum indicum P24]
gi|407205866|gb|EKE75832.1| tRNA pseudouridine synthase A [Oceanibaculum indicum P24]
Length = 254
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 154 YHARATEAILPCPVNDHGEGRKV-----MCVELVANRFLRKMVRVLVATLVREAAAGADE 208
+ A+ +A P D E ++ M VE A FL VR TL +
Sbjct: 157 FRAKECQAASPVKTLDRLEVSRIGEEVQMVVE--ARSFLHHQVRNFAGTLALVGLGTWTQ 214
Query: 209 DALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D L + ++A RRA P APP+GL L V Y
Sbjct: 215 DDLRQALEARDRRAGGPTAPPDGLYLTRVDY 245
>gi|409386794|ref|ZP_11239147.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
gi|399206007|emb|CCK20062.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
Length = 253
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL K VR +V TLV+ A + +++ A R P AP GLCL++V Y
Sbjct: 190 GNGFLYKQVRNMVGTLVKIGAGKWPVSRVSEILVAQNRDLAGPTAPAHGLCLMEVRY 246
>gi|84683526|ref|ZP_01011429.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus
HTCC2654]
gi|84668269|gb|EAQ14736.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus
HTCC2654]
Length = 257
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR V TL R A D + ++A R A P PP+GL L VGY
Sbjct: 193 ARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPPDGLYLARVGY 249
>gi|381152958|ref|ZP_09864827.1| pseudouridylate synthase I [Methylomicrobium album BG8]
gi|380884930|gb|EIC30807.1| pseudouridylate synthase I [Methylomicrobium album BG8]
Length = 268
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG KV+ +++ AN FL MVR + +L+ A D + +L+ A R APP G
Sbjct: 178 EGDKVI-MDIAANAFLHHMVRNIAGSLIAVGAGKQPADWIRELLAAKKRALAGITAPPHG 236
Query: 232 LCLVDVGY 239
L L V Y
Sbjct: 237 LYLGGVFY 244
>gi|170754451|ref|YP_001781475.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|429246235|ref|ZP_19209574.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
gi|169119663|gb|ACA43499.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|428756753|gb|EKX79286.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
Length = 246
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL KM+R+L TL+ + +++A RR P AP +GL + V Y
Sbjct: 192 FLHKMIRILTGTLIEIGLHNLKSVDVKIILEAEDRRKAGPTAPSQGLFMTSVDY 245
>gi|336316106|ref|ZP_08571008.1| pseudouridylate synthase I [Rheinheimera sp. A13L]
gi|335879596|gb|EGM77493.1| pseudouridylate synthase I [Rheinheimera sp. A13L]
Length = 264
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +++ AN FL MVR + +L++ + + + +L+ A R A A EGL L
Sbjct: 179 QFIVLDIKANAFLHHMVRNITGSLLQVGMGLKEPEWIARLLAAKDRTLAAATAKAEGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y P++ IP
Sbjct: 239 VDVDY----PEHFGIP 250
>gi|190150230|ref|YP_001968755.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263568|ref|ZP_07545183.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|238692338|sp|B3GXP8.1|TRUA_ACTP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189915361|gb|ACE61613.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871211|gb|EFN02940.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 262
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|118581782|ref|YP_903032.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379]
gi|166228745|sp|A1AUF4.1|TRUA_PELPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|118504492|gb|ABL00975.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379]
Length = 244
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ ++++ FL+ MVRV+ TLV + + + L++ R+ AP GLCL
Sbjct: 180 ELIVIDVIGEGFLKNMVRVMAGTLVDVGRGRFEPERVAWLLENPDRKKAGVTAPACGLCL 239
Query: 235 VDVGY 239
+DV Y
Sbjct: 240 MDVSY 244
>gi|238895838|ref|YP_002920574.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|329997357|ref|ZP_08302740.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3]
gi|378979936|ref|YP_005228077.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386035869|ref|YP_005955782.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|402779659|ref|YP_006635205.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972688|ref|ZP_14488115.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977633|ref|ZP_14492932.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983251|ref|ZP_14498402.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989500|ref|ZP_14504476.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995538|ref|ZP_14510344.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001549|ref|ZP_14516204.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006546|ref|ZP_14521043.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012367|ref|ZP_14526681.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018016|ref|ZP_14532214.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420023896|ref|ZP_14537911.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031263|ref|ZP_14545085.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037112|ref|ZP_14550768.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041058|ref|ZP_14554556.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046820|ref|ZP_14560139.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052530|ref|ZP_14565711.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060410|ref|ZP_14573410.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420063990|ref|ZP_14576801.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069791|ref|ZP_14582445.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075334|ref|ZP_14587810.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081096|ref|ZP_14593406.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909623|ref|ZP_16339433.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421916957|ref|ZP_16346521.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424831659|ref|ZP_18256387.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932437|ref|ZP_18350809.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425075603|ref|ZP_18478706.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425082551|ref|ZP_18485648.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425086239|ref|ZP_18489332.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425092633|ref|ZP_18495718.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428148126|ref|ZP_18996018.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428936828|ref|ZP_19010197.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|449060374|ref|ZP_21738034.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|238548156|dbj|BAH64507.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|328539106|gb|EGF65142.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3]
gi|339762997|gb|AEJ99217.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|364519347|gb|AEW62475.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397350085|gb|EJJ43175.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397353974|gb|EJJ47041.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397355422|gb|EJJ48421.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397367305|gb|EJJ59917.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369623|gb|EJJ62223.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397371873|gb|EJJ64381.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397382256|gb|EJJ74419.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397386209|gb|EJJ78295.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397390731|gb|EJJ82629.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397400132|gb|EJJ91778.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400576|gb|EJJ92217.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397405775|gb|EJJ97221.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397418593|gb|EJK09751.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397419376|gb|EJK10525.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397425432|gb|EJK16311.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397433702|gb|EJK24346.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397434549|gb|EJK25184.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442385|gb|EJK32736.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448427|gb|EJK38601.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453401|gb|EJK43461.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402540595|gb|AFQ64744.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405594003|gb|EKB67426.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405600803|gb|EKB73968.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405605154|gb|EKB78220.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405611859|gb|EKB84625.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407806624|gb|EKF77875.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410116525|emb|CCM82058.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120674|emb|CCM89146.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414709094|emb|CCN30798.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426297534|gb|EKV60021.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|427541968|emb|CCM92156.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448873941|gb|EMB09008.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 270
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|152971246|ref|YP_001336355.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166228703|sp|A6TC04.1|TRUA_KLEP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|150956095|gb|ABR78125.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 270
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|432637568|ref|ZP_19873438.1| tRNA pseudouridine synthase A [Escherichia coli KTE81]
gi|431170762|gb|ELE70951.1| tRNA pseudouridine synthase A [Escherichia coli KTE81]
Length = 270
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN FL MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---PYVVVDIKANAFLHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGY 239
A A EGL LV V Y
Sbjct: 235 LAAATAKAEGLYLVAVDY 252
>gi|365971485|ref|YP_004953046.1| tRNA pseudouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365750398|gb|AEW74625.1| tRNA pseudouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 270
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens]
Length = 365
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 93 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF 148
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E + S +Q N CY+ N F S + P++ + CR
Sbjct: 149 AHK----DRDVQDETYRLSAETLQQVNRLLACYKGTHNF-----HNFTSQKGPQDPSACR 199
Query: 118 VNL 120
L
Sbjct: 200 YIL 202
>gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317314|sp|Q0AUL4.1|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 249
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I C +++ G + + + A+ FL MVR++ TL+ L +++ + R
Sbjct: 170 IFHCRLSEKG---PCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRT 226
Query: 222 ATAPPAPPEGLCLVDVGY 239
P APP+GL L+ V Y
Sbjct: 227 RAGPTAPPQGLYLLQVFY 244
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 169 DHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAP 228
D G +++ +E+ A FL MVR + L+ + + ++++A R A + AP
Sbjct: 198 DIGRVGQLIVLEVSATAFLHHMVRNIAGVLMAVGRGDRSPEWVRQVLEARDRTAASVTAP 257
Query: 229 PEGLCLVDVGY 239
P GL LVDV Y
Sbjct: 258 PHGLYLVDVQY 268
>gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens]
Length = 432
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 160 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF 215
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E + S +Q N CY+ N F S + P++ + CR
Sbjct: 216 AHK----DRDVQDETYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACR 266
Query: 118 VNLLL 122
L +
Sbjct: 267 YILEM 271
>gi|428943173|ref|ZP_19016102.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae VA360]
gi|426297237|gb|EKV59757.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae VA360]
Length = 270
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|326790769|ref|YP_004308590.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
gi|326541533|gb|ADZ83392.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
Length = 246
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL+ MVR+L TL+ + +L L++ R AP GLC+ V Y
Sbjct: 190 GNGFLQHMVRILTGTLIEVGLGERSPEEMLVLLNNQIRSEAGFTAPAHGLCMQRVDY 246
>gi|260576677|ref|ZP_05844664.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2]
gi|259021162|gb|EEW24471.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2]
Length = 257
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
D+ EG+++ L A FL VR ++ TL + A + + + + A R A P
Sbjct: 179 TRDYPEGQEIR-FTLRARSFLHNQVRSIIGTLAQVGAGHWPPERVAEALAARDRAACGPV 237
Query: 227 APPEGLCLVDVGYTNFDP 244
PP+GL L VGY DP
Sbjct: 238 CPPQGLYLAGVGYPQ-DP 254
>gi|228470580|ref|ZP_04055437.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3]
gi|228307707|gb|EEK16683.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3]
Length = 262
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
E S+ TK +R C +Y A + +P + M E+ ANR
Sbjct: 153 EHDFTSFSKLHTQTKHNR-------CTVYTAHWEQVEMPGLWD-------AMRYEVCANR 198
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTN---- 241
FL MVR +V TL+ D++ +L+ R AP L V+ Y +
Sbjct: 199 FLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAAPARALFFVEATYPDSIYS 258
Query: 242 FDPQ 245
DPQ
Sbjct: 259 LDPQ 262
>gi|307245766|ref|ZP_07527852.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307254739|ref|ZP_07536566.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259179|ref|ZP_07540909.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306853468|gb|EFM85687.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862265|gb|EFM94232.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866846|gb|EFM98704.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 262
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|444726440|gb|ELW66974.1| tRNA pseudouridine synthase A, mitochondrial [Tupaia chinensis]
Length = 452
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R YLY+ P
Sbjct: 181 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYLYMLPTFAF 236
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPR 111
++ D +V+ E++ S +Q N CY+ N F S + PR
Sbjct: 237 AHK----DRDVQDESYRLSPEALQQVNRLLACYQGTHNFH-----NFTSQKGPR 281
>gi|294624568|ref|ZP_06703244.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601141|gb|EFF45202.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 257
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 138 DTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVAT 197
D A R++ +C HAR + V GE V+ V++ AN FL MVR +V +
Sbjct: 153 DFSAFRSV----QCQALHAR--RHLQAIHVQRFGE---VVEVQVQANAFLHHMVRNIVGS 203
Query: 198 LVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
L+ D + L+ R P APP+GL +
Sbjct: 204 LILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGLVFI 241
>gi|46143880|ref|ZP_00204588.1| COG0101: Pseudouridylate synthase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 262
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|365137273|ref|ZP_09343993.1| tRNA pseudouridine synthase A [Klebsiella sp. 4_1_44FAA]
gi|363656285|gb|EHL95049.1| tRNA pseudouridine synthase A [Klebsiella sp. 4_1_44FAA]
Length = 270
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|414085611|ref|YP_006994325.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
gi|412999201|emb|CCO13010.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
Length = 272
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR+L+ TL++ A L +++ A R+ P A P GL L+ V Y
Sbjct: 193 GNGFLYNMVRILIGTLLQIANGRRPVHDLARIIAAKDRQQAGPTASPSGLYLLKVTY 249
>gi|261340711|ref|ZP_05968569.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288317127|gb|EFC56065.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 270
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|161502487|ref|YP_001569599.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|189030140|sp|A9MJ57.1|TRUA_SALAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|160863834|gb|ABX20457.1| hypothetical protein SARI_00531 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 270
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHISVTRHG---PYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD 243
A A EGL LV V Y + FD
Sbjct: 235 LAAATAKAEGLYLVAVDYPDRFD 257
>gi|150008550|ref|YP_001303293.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC
8503]
gi|255014350|ref|ZP_05286476.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_7]
gi|410103252|ref|ZP_11298176.1| tRNA pseudouridine synthase A [Parabacteroides sp. D25]
gi|166228743|sp|A6LDA7.1|TRUA_PARD8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149936974|gb|ABR43671.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC
8503]
gi|409237710|gb|EKN30508.1| tRNA pseudouridine synthase A [Parabacteroides sp. D25]
Length = 252
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 146 LFDYIDFTSFSKLHTDV-KTNNCHIQHAGWTQ-----------EG-DIWVFTIRADRFLR 192
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 193 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 243
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
+ +++V N FL MVR +V L D D L+++++ PAP GL L+
Sbjct: 165 ITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIYEEGIEPAPAYGLTLM 224
Query: 236 DVGY 239
V Y
Sbjct: 225 GVNY 228
>gi|303251239|ref|ZP_07337417.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252529|ref|ZP_07534425.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261387|ref|ZP_07543062.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|302649781|gb|EFL79959.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860121|gb|EFM92138.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306869118|gb|EFN00920.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 262
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
Length = 248
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + N FL MVR++ TL+ + + +++A R APPEGL L
Sbjct: 184 LLIRYTGNGFLYNMVRIITGTLIEVGLGQRKAEDMKGILEAKDRNQAGFTAPPEGLFLEQ 243
Query: 237 VGY 239
V Y
Sbjct: 244 VRY 246
>gi|392530584|ref|ZP_10277721.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum ATCC
35586]
Length = 272
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR+L+ TL++ A L +++ A R+ P A P GL L+ V Y
Sbjct: 193 GNGFLYNMVRILIGTLLQIANGRRPVHDLARIIAAKDRQQAGPTASPSGLYLLKVTY 249
>gi|262043366|ref|ZP_06016493.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039278|gb|EEW40422.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 270
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|56751899|ref|YP_172600.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 6301]
gi|60416392|sp|O24712.2|TRUA_SYNP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56686858|dbj|BAD80080.1| tRNA pseudouridine synthase [Synechococcus elongatus PCC 6301]
Length = 294
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL M+R+LV LV+ ++ + R APP+GLCL+ +G
Sbjct: 197 IEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLCLLRIG 256
Query: 239 YTN 241
Y +
Sbjct: 257 YPD 259
>gi|303252899|ref|ZP_07339058.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247890|ref|ZP_07529926.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648329|gb|EFL78526.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855692|gb|EFM87859.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 262
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
Length = 244
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 138 DTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVAT 197
D A RN+G A I V +HG+ ++ + + + FL MVR++ T
Sbjct: 152 DFNAFRNLGTEV------ASTVRTIHRIEVEEHGD---IINILVTGDGFLYNMVRIIAGT 202
Query: 198 LVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
LV D + ++++ R AP GL L V Y
Sbjct: 203 LVEVGLGQKRSDQIKVILESKDRNRAGKTAPARGLSLDKVYY 244
>gi|342215554|ref|ZP_08708201.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586444|gb|EGS29844.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 245
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 78/224 (34%), Gaps = 60/224 (26%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N P I V+ V V FH FSAK + Y Y+ + N
Sbjct: 79 VVNFNLPPDISVLGVQVVDDDFHARFSAKAKLYRYV------------------IYN--- 117
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL--QRLEGKLLSYKTFA 136
G+ N YEN C V+ L +++E L
Sbjct: 118 ----GRYRNPLYEN---------------------RACFVHFPLDEKKMEKAL------- 145
Query: 137 RDTKASRNIGPPTECFI-YHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+D R+ G F+ HA + D + ++ + FL+ M+R ++
Sbjct: 146 KDLPGLRDYG----VFMGRHAVVKDTYRKLYWVDVKRKKDLIVIHFYGKSFLKNMIRRIM 201
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
T + D D L K +++ + P AP EGL L+ V Y
Sbjct: 202 GTSIEIGRGLKDTDTLKKALESQDKAYLGPTAPAEGLYLMRVDY 245
>gi|294666793|ref|ZP_06732027.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603454|gb|EFF46871.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 257
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 138 DTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVAT 197
D A R++ +C HAR + V GE V+ V++ AN FL MVR +V +
Sbjct: 153 DFSAFRSV----QCQALHAR--RHLQAIHVQRFGE---VVEVQVQANAFLHHMVRNIVGS 203
Query: 198 LVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
L+ D + L+ R P APP+GL +
Sbjct: 204 LILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGLVFI 241
>gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
Length = 338
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDG 60
++ L W D DI + INS P IR++ + +V+ F+ R Y Y+ P
Sbjct: 66 VVSLKVWLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF 121
Query: 61 ENREQSIDSEVEVENFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICR 117
++ D +V+ E + S +Q N CY+ N F S + P++ + CR
Sbjct: 122 AHK----DRDVQDETYRLSAETLQQVNRLLACYKGTHNF-----HNFTSQKGPQDPSACR 172
Query: 118 VNL 120
L
Sbjct: 173 YIL 175
>gi|91223605|ref|ZP_01258870.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01]
gi|269966027|ref|ZP_06180119.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B]
gi|91191691|gb|EAS77955.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01]
gi|269829423|gb|EEZ83665.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B]
Length = 264
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + +++ AN F+ MVR + +L++ + + L++A R+
Sbjct: 169 LMHLNVTRHG---NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|347759144|ref|YP_004866706.1| tRNA pseudouridine synthase A [Micavibrio aeruginosavorus ARL-13]
gi|347591662|gb|AEP10704.1| tRNA pseudouridine synthase A [Micavibrio aeruginosavorus ARL-13]
Length = 256
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL VR +V TL D + + ++A RRA P APP+GL LV + Y
Sbjct: 203 FLHHQVRNMVGTLAMVGDGKWTSDQVREALEARDRRAGGPTAPPDGLYLVRIDY 256
>gi|196233677|ref|ZP_03132518.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428]
gi|196222347|gb|EDY16876.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428]
Length = 251
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 90/233 (38%), Gaps = 65/233 (27%)
Query: 14 SDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYL-------YIFPLNDGENREQS 66
S A+N+ P +IRV+ VS+ + FH F A+ + Y Y+ PL G R
Sbjct: 77 SAWRGALNNFLPPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASYLHPLEIG--RAWH 134
Query: 67 IDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLE 126
+ S+++++ I +G Q LE
Sbjct: 135 MPSKLDLD-----------------------ILRQGA-------------------QMLE 152
Query: 127 GKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRF 186
GK + FA A+R G E + R + I D ++ + N F
Sbjct: 153 GKH-DFAGFA----ANRAPGYAAEDTV---RTIQHICLTRRGD------LLNLRFEGNGF 198
Query: 187 LRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L KMVR+L TLVR A A+ + +L+ + T+ AP EGL L V Y
Sbjct: 199 LYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAEGLYLTRVLY 251
>gi|165976323|ref|YP_001651916.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307250146|ref|ZP_07532106.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307256957|ref|ZP_07538734.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|238687566|sp|B0BPI7.1|TRUA_ACTPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|165876424|gb|ABY69472.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306857811|gb|EFM89907.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306864532|gb|EFM96438.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 262
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + L+ R AP A EGL LVD
Sbjct: 181 IVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYLVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VHY 243
>gi|81301016|ref|YP_401224.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942]
gi|81169897|gb|ABB58237.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942]
Length = 294
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL M+R+LV LV+ ++ + R APP+GLCL+ +G
Sbjct: 197 IEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLCLLRIG 256
Query: 239 YTN 241
Y +
Sbjct: 257 YPD 259
>gi|347751562|ref|YP_004859127.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1]
gi|347584080|gb|AEP00347.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1]
Length = 245
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+C + N FL MVR+L TL+ + D + ++++ R APPEGL L
Sbjct: 184 VICFK--GNGFLYNMVRILTGTLLEIGSGKRDPGEMREILEKRNRIYAGKTAPPEGLYLW 241
Query: 236 DVGY 239
V Y
Sbjct: 242 KVSY 245
>gi|440286778|ref|YP_007339543.1| pseudouridylate synthase I [Enterobacteriaceae bacterium strain FGI
57]
gi|440046300|gb|AGB77358.1| pseudouridylate synthase I [Enterobacteriaceae bacterium strain FGI
57]
Length = 270
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAQNQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|392381302|ref|YP_005030499.1| tRNA pseudouridine synthase A [Azospirillum brasilense Sp245]
gi|356876267|emb|CCC97030.1| tRNA pseudouridine synthase A [Azospirillum brasilense Sp245]
Length = 245
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V A FL VR +V TL A D L + ++A R A P APP+GL V+
Sbjct: 185 VHAAARSFLHHQVRNMVGTLELVGAGKWSADDLRRALEARNRSAAGPTAPPDGLYFVNAR 244
Query: 239 Y 239
Y
Sbjct: 245 Y 245
>gi|407776881|ref|ZP_11124153.1| tRNA pseudouridine synthase A [Nitratireductor pacificus pht-3B]
gi|407301577|gb|EKF20697.1| tRNA pseudouridine synthase A [Nitratireductor pacificus pht-3B]
Length = 247
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR TL R G + + ++A R+A P APP GL LV V Y
Sbjct: 191 ARSFLHNQVRSFAGTLKRVGEGGWTAADVTRALEARDRKACGPVAPPHGLYLVKVDY 247
>gi|374623580|ref|ZP_09696087.1| tRNA pseudouridine synthase A [Ectothiorhodospira sp. PHS-1]
gi|373942688|gb|EHQ53233.1| tRNA pseudouridine synthase A [Ectothiorhodospira sp. PHS-1]
Length = 266
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + L+ D L +L +A R APP+GL LV
Sbjct: 186 IYLDIRANAFLHHMVRNIAGALMCVGRGERPSDWLAELREARDRSQGGVTAPPDGLYLVQ 245
Query: 237 VGYTNFDPQNSLIP 250
VGY D Q L P
Sbjct: 246 VGY---DAQFDLRP 256
>gi|256841433|ref|ZP_05546940.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13]
gi|256737276|gb|EEU50603.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13]
Length = 265
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 159 LFDYIDFTSFSKLHTDV-KTNNCHIQHADWTQ-----------EG-DIWVFTIRADRFLR 205
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 206 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 256
>gi|255604972|ref|XP_002538318.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223512770|gb|EEF24066.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 283
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
V+ E A+ FL MVR LV +LV + + L++ RR AP P+GL L
Sbjct: 204 VILFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYLT 263
Query: 236 DVGYTNFDPQNSL 248
V Y DP+ +L
Sbjct: 264 GVHY---DPRWNL 273
>gi|392980084|ref|YP_006478672.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326017|gb|AFM60970.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 270
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|170760365|ref|YP_001787307.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
gi|169407354|gb|ACA55765.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
Length = 246
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 179 VELV--ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
V+LV + FL KM+R+L TL+ + +++ RR P AP +GL +
Sbjct: 183 VDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEVEDRRKAGPTAPSQGLFMTS 242
Query: 237 VGY 239
V Y
Sbjct: 243 VDY 245
>gi|296104004|ref|YP_003614150.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058463|gb|ADF63201.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 270
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|339445580|ref|YP_004711584.1| pseudouridylate synthase [Eggerthella sp. YY7918]
gi|338905332|dbj|BAK45183.1| pseudouridylate synthase [Eggerthella sp. YY7918]
Length = 279
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G ++ +++V N FL MVR +V TLV + ++++A R+A AP +GL
Sbjct: 213 GENILAIKVVGNAFLHSMVRTIVGTLVMVGRGQRPATWVAEVLEARDRQAAGENAPAQGL 272
Query: 233 CLVDVGY 239
V Y
Sbjct: 273 VFWRVIY 279
>gi|195940683|ref|ZP_03086065.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|334124977|ref|ZP_08498971.1| tRNA pseudouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|419959300|ref|ZP_14475355.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|295098046|emb|CBK87136.1| pseudouridylate synthase I [Enterobacter cloacae subsp. cloacae
NCTC 9394]
gi|333387547|gb|EGK58741.1| tRNA pseudouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|388605811|gb|EIM35026.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 270
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451976153|ref|ZP_21927321.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451929882|gb|EMD77608.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
Length = 264
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + +++ AN F+ MVR + +L++ + + L++A R+
Sbjct: 169 LMHLNVTRHG---NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRK 225
Query: 222 ATAPPAPPEGLCLVDVGY 239
A EGL LVDV Y
Sbjct: 226 LAGATAKAEGLYLVDVDY 243
>gi|322831951|ref|YP_004211978.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602]
gi|384257057|ref|YP_005400991.1| tRNA pseudouridine synthase A [Rahnella aquatilis HX2]
gi|321167152|gb|ADW72851.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602]
gi|380753033|gb|AFE57424.1| tRNA pseudouridine synthase A [Rahnella aquatilis HX2]
Length = 276
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V + V FH FSA RRY Y+ NR +S V + H
Sbjct: 92 GVNTHLPKDIAVRWCANVGEDFHARFSATARRYRYVIY----NNRYRSAILHAGVTHVHM 147
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+V E + + + G ++ FT R + R + + + +R
Sbjct: 148 PLDV-----------EKMQLAGQALLGEND----FTSFRASQCQSRTPWRYVMHVNVSR- 191
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
HG + V++ AN F+ MVR +V +L
Sbjct: 192 -------------------------------HGS---YVVVDIKANAFVHHMVRNIVGSL 217
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
V A + +L+ A R A PEGL LV V Y
Sbjct: 218 VEIGAGNQPVGWMGELLAAKDRNLAAATGKPEGLYLVCVDY 258
>gi|298376183|ref|ZP_06986139.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19]
gi|298267220|gb|EFI08877.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19]
Length = 265
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 159 LFDYIDFTSFSKLHTDV-KTNNCHIQHAGWTQ-----------EG-DIWVFTIRADRFLR 205
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 206 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 256
>gi|356545824|ref|XP_003541334.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max]
Length = 327
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 55/228 (24%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
+ A+N P IR+ +S S FH FSAK + Y Y I ++ ++
Sbjct: 120 QLHAALNGLLPTDIRIREISPASAEFHARFSAKSKIYHY------------KIYNDAIMD 167
Query: 75 NFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKT 134
F Q + Y ++ L N + R GK +
Sbjct: 168 PF--------QRHFAYHSVYKL---------------NSAVMREAATY--FVGKH-DFSA 201
Query: 135 FARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVL 194
FA + R P F + + A+L V G FL + VR +
Sbjct: 202 FANASHNDRVPDPVKHVFRFDLKEMGALLQLEVEGSG--------------FLYRQVRNM 247
Query: 195 VATLVREAAAGADEDALLKLMDATCRRATAP---PAPPEGLCLVDVGY 239
VA L++ D + ++ + R+ A PAPP GLCLV + Y
Sbjct: 248 VALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPPHGLCLVSINY 295
>gi|311278721|ref|YP_003940952.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1]
gi|308747916|gb|ADO47668.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1]
Length = 270
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|307154816|ref|YP_003890200.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822]
gi|306985044|gb|ADN16925.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822]
Length = 284
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+ AN FL MVR+L+ L+ + R AP +GLCL+ VG
Sbjct: 194 VEIQANGFLYGMVRLLMGMLIEVGNQQRSLSEFTNIWKNQRREEVKYAAPAKGLCLLRVG 253
Query: 239 YTNF 242
Y F
Sbjct: 254 YPEF 257
>gi|354724385|ref|ZP_09038600.1| tRNA pseudouridine synthase A [Enterobacter mori LMG 25706]
Length = 270
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|365839710|ref|ZP_09380938.1| tRNA pseudouridine synthase A [Anaeroglobus geminatus F0357]
gi|364563847|gb|EHM41637.1| tRNA pseudouridine synthase A [Anaeroglobus geminatus F0357]
Length = 279
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
++++ + FL MVR +V LV +AL +++D RR AP +GL L +V
Sbjct: 188 IDVLGSGFLYHMVRNIVGALVDAGLHRKSPEALARILDGRDRRKLGATAPAQGLFLEEVF 247
Query: 239 YTN 241
YT
Sbjct: 248 YTK 250
>gi|373462328|ref|ZP_09554055.1| tRNA pseudouridine synthase A [Prevotella maculosa OT 289]
gi|371949107|gb|EHO66980.1| tRNA pseudouridine synthase A [Prevotella maculosa OT 289]
Length = 243
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ ANRFLR MVR V TL L +++D R PP L L D+ Y
Sbjct: 184 EITANRFLRNMVRATVGTLFLLGRHKISLTDLERILDEGNRSHAGESMPPHALFLEDIEY 243
>gi|262383400|ref|ZP_06076536.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B]
gi|262294298|gb|EEY82230.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B]
Length = 265
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 159 LFDYIDFTSFSKLHTDV-KTNNCHIQHAGWTQ-----------EG-DIWVFTIRADRFLR 205
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 206 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 256
>gi|334120584|ref|ZP_08494663.1| tRNA pseudouridine synthase A [Microcoleus vaginatus FGP-2]
gi|333456186|gb|EGK84821.1| tRNA pseudouridine synthase A [Microcoleus vaginatus FGP-2]
Length = 287
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ +E+ A+ FL M+R+LV LV+ D + R AP +GLCL+
Sbjct: 196 LIYIEVQASGFLYGMMRLLVGLLVQVGRGERPIDNFTDIWVNERREMVKYAAPAQGLCLL 255
Query: 236 DVGYTNF 242
VGY+ F
Sbjct: 256 RVGYSEF 262
>gi|332664422|ref|YP_004447210.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
gi|332333236|gb|AEE50337.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
Length = 256
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
+G KV V ++A+ FL KMVR +V +LV A D D + ++ + APP G
Sbjct: 177 KGDKV-VVHIIASHFLWKMVRRVVGSLVEVGAGRLDPDKFKEWLEKPSQEPAKFTAPPAG 235
Query: 232 LCL 234
L L
Sbjct: 236 LFL 238
>gi|301309451|ref|ZP_07215393.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3]
gi|423330684|ref|ZP_17308468.1| tRNA pseudouridine synthase A [Parabacteroides distasonis
CL03T12C09]
gi|300832540|gb|EFK63168.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3]
gi|409232300|gb|EKN25148.1| tRNA pseudouridine synthase A [Parabacteroides distasonis
CL03T12C09]
Length = 252
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 146 LFDYIDFTSFSKLHTDV-KTNNCHIQHAGWTQ-----------EG-DIWVFTIRADRFLR 192
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 193 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 243
>gi|332300500|ref|YP_004442421.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM
20707]
gi|332177563|gb|AEE13253.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM
20707]
Length = 262
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
E S+ TK +R C +Y A + +P + M E+ ANR
Sbjct: 153 EHDFTSFSKLHTQTKHNR-------CTVYTAHWEQVEMPGLWD-------AMRYEVCANR 198
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL MVR +V TL+ D++ +L+ + R AP L V+ Y
Sbjct: 199 FLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAPARALFFVEATY 252
>gi|423104107|ref|ZP_17091809.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376385749|gb|EHS98470.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 270
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|193214164|ref|YP_001995363.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC
35110]
gi|193087641|gb|ACF12916.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC
35110]
Length = 265
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREA---AAGADEDALLKLMDATCRRATAPPAPPEGLC 233
+ +E+ ANRFL MVR+LV T+++ + D DA+ D C AT+ A P+GL
Sbjct: 200 LMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKD-VCLAATS--AQPQGLF 256
Query: 234 LVDVGY 239
L V Y
Sbjct: 257 LWHVEY 262
>gi|387820328|ref|YP_006300371.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis B420]
gi|387821994|ref|YP_006301943.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|386653029|gb|AFJ16159.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis B420]
gi|386654602|gb|AFJ17731.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 291
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++C +VA+ F R MVR LV V+ D D M R + P P+GL L
Sbjct: 209 LLCFTIVADAFARNMVRSLVGACVQVGMGKRDVDWFAGKMRVPLREGSTGPIAPQGLTLE 268
Query: 236 DVGY 239
+ Y
Sbjct: 269 HIAY 272
>gi|146312509|ref|YP_001177583.1| tRNA pseudouridine synthase A [Enterobacter sp. 638]
gi|166991163|sp|A4WCV2.1|TRUA_ENT38 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145319385|gb|ABP61532.1| tRNA pseudouridine synthase A [Enterobacter sp. 638]
Length = 270
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|313887179|ref|ZP_07820875.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923408|gb|EFR34221.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica
PR426713P-I]
Length = 262
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 126 EGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANR 185
E S+ TK +R C +Y A + +P + M E+ ANR
Sbjct: 153 EHDFTSFSKLHTQTKHNR-------CTVYTAHWEQVEMPGLWD-------AMRYEVCANR 198
Query: 186 FLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
FL MVR +V TL+ D++ +L+ + R AP L V+ Y
Sbjct: 199 FLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAPARALFFVEATY 252
>gi|283786396|ref|YP_003366261.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168]
gi|282949850|emb|CBG89473.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168]
Length = 269
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V+ HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 177 VMHINVSRHG---AYVVVDIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRT 233
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD 243
A A EGL LV V Y + FD
Sbjct: 234 LAAATAKAEGLYLVAVDYPDRFD 256
>gi|237808326|ref|YP_002892766.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187]
gi|259550489|sp|C4LF13.1|TRUA_TOLAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|237500587|gb|ACQ93180.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187]
Length = 261
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 170 HGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
H G V+ +++ AN FL MVR ++ +L+ ++ + +++DA R + A
Sbjct: 175 HRAGSYVI-LDIQANAFLHHMVRNIMGSLLLVGTGEKPKEWIGEILDAKDRTVSGATAKA 233
Query: 230 EGLCLVDVGY 239
EGL LVDV Y
Sbjct: 234 EGLYLVDVTY 243
>gi|183601972|ref|ZP_02963341.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190461|ref|YP_002967855.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195867|ref|YP_002969422.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384195017|ref|YP_005580762.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis V9]
gi|423678983|ref|ZP_17653859.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218857|gb|EDT89499.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis HN019]
gi|240248853|gb|ACS45793.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250421|gb|ACS47360.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793448|gb|ADG32983.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis V9]
gi|366042172|gb|EHN18653.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BS 01]
Length = 258
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++C +VA+ F R MVR LV V+ D D M R + P P+GL L
Sbjct: 176 LLCFTIVADAFARNMVRSLVGACVQVGMGKRDVDWFAGKMRVPLREGSTGPIAPQGLTLE 235
Query: 236 DVGY 239
+ Y
Sbjct: 236 HIAY 239
>gi|169830466|ref|YP_001716448.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator
MP104C]
gi|238688213|sp|B1I1B5.1|TRUA_DESAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169637310|gb|ACA58816.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator
MP104C]
Length = 250
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+ FL MVR++ TL+ D +AL ++ + R P PP GLCL +V Y
Sbjct: 191 ADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPHGLCLEEVEY 247
>gi|333922481|ref|YP_004496061.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748042|gb|AEF93149.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 249
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 77/229 (33%), Gaps = 54/229 (23%)
Query: 11 VKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSE 70
V I A+NS P I VI +V FH FSA + Y Y SI +
Sbjct: 75 VPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRY------------SIYNH 122
Query: 71 VEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLL 130
+ H + HE PR I + Q L G
Sbjct: 123 RVMSPLHRL------------------------YAYHE-PRPLDIEAMRQAAQYLLG--- 154
Query: 131 SYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKM 190
D K+ + G P + + E + P+ + + L N FL M
Sbjct: 155 -----THDFKSFQAQGTPVKDTVRTIYRAELVSEPPL---------IHLYLRGNGFLYNM 200
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
VR++ TL+ + +++A R PP GLCL++V Y
Sbjct: 201 VRIITGTLLDVGKGKKFPPEMKSIIEARNRTRAGTTVPPHGLCLMEVEY 249
>gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
Length = 252
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ E+ A+ FL+ MVR +V TLV +A+ ++ A R AP GL LV
Sbjct: 184 LAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFLVR 243
Query: 237 VGY 239
V Y
Sbjct: 244 VNY 246
>gi|85703371|ref|ZP_01034475.1| tRNA pseudouridine synthase A [Roseovarius sp. 217]
gi|85672299|gb|EAQ27156.1| tRNA pseudouridine synthase A [Roseovarius sp. 217]
Length = 257
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+L A FL VR +V TL R A D + +DA R A P PP GL L V Y
Sbjct: 190 QLRARSFLHNQVRSIVGTLERVGAGSWHPDQVRGALDARDRAACGPVCPPYGLYLAHVVY 249
>gi|375262094|ref|YP_005021264.1| tRNA pseudouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397659208|ref|YP_006499910.1| tRNA pseudouridine synthase A [Klebsiella oxytoca E718]
gi|402845159|ref|ZP_10893504.1| tRNA pseudouridine(38-40) synthase [Klebsiella sp. OBRC7]
gi|365911572|gb|AEX07025.1| tRNA pseudouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394347413|gb|AFN33534.1| tRNA pseudouridine synthase A [Klebsiella oxytoca E718]
gi|402272089|gb|EJU21314.1| tRNA pseudouridine(38-40) synthase [Klebsiella sp. OBRC7]
Length = 270
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|423338060|ref|ZP_17315803.1| tRNA pseudouridine synthase A [Parabacteroides distasonis
CL09T03C24]
gi|409235569|gb|EKN28386.1| tRNA pseudouridine synthase A [Parabacteroides distasonis
CL09T03C24]
Length = 274
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
L Y F +K ++ C I HA T+ EG + + A+RFLR
Sbjct: 168 LFDYIDFTSFSKLHTDV-KTNNCHIQHAGWTQ-----------EG-DIWVFTIRADRFLR 214
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
MVR +V TL+ D +++A R P L LVDV Y
Sbjct: 215 NMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFLVDVTY 265
>gi|407892594|ref|ZP_11151624.1| tRNA pseudouridine synthase A [Diplorickettsia massiliensis 20B]
Length = 259
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAP-PAPPE 230
+ +VM +++ AN FL MVR + A L+ +G + + TC R+ A APP
Sbjct: 177 QAHRVM-IDITANAFLHHMVRNIAAVLML-IGSGKQSPKWAEEVLRTCDRSQAGVTAPPN 234
Query: 231 GLCLVDVGYTN 241
GL L +VGY N
Sbjct: 235 GLYLCEVGYPN 245
>gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
gi|166228701|sp|A4IJL9.1|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
Length = 253
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ V + FL MVR++V T++ D + L+ A RR P AP EGL L
Sbjct: 183 MLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRRLAGPTAPAEGLYLW 242
Query: 236 DVGY 239
V Y
Sbjct: 243 RVYY 246
>gi|421727195|ref|ZP_16166359.1| tRNA pseudouridine synthase A [Klebsiella oxytoca M5al]
gi|410371986|gb|EKP26703.1| tRNA pseudouridine synthase A [Klebsiella oxytoca M5al]
Length = 270
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + +L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGY 239
V Y
Sbjct: 250 VDY 252
>gi|406669026|ref|ZP_11076314.1| tRNA pseudouridine synthase A [Facklamia ignava CCUG 37419]
gi|405584709|gb|EKB58592.1| tRNA pseudouridine synthase A [Facklamia ignava CCUG 37419]
Length = 256
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR+LV TL++ + +L+ R P A PEGL LV+V Y
Sbjct: 194 GNGFLYNMVRILVGTLLQIGDGIRPVSDMERLLQVRDRNLAGPTAKPEGLFLVEVVY 250
>gi|374850596|dbj|BAL53581.1| tRNA pseudouridine synthase A [uncultured Bacteroidetes bacterium]
Length = 261
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 165 CPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATA 224
C + G GR + E+VANRF+ MVR LV ++ A L + + A RR ++
Sbjct: 174 CSWHQCGGGRYRL--EIVANRFVYGMVRCLVGAMLDCARGKRSAAELAEALHARDRRRSS 231
Query: 225 PPAPPEGLCLVDVGY 239
P APP GL V Y
Sbjct: 232 PIAPPHGLVFESVEY 246
>gi|219682884|ref|YP_002469267.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis AD011]
gi|384190693|ref|YP_005576441.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BB-12]
gi|384191835|ref|YP_005577582.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium animalis subsp.
lactis CNCM I-2494]
gi|452892189|ref|YP_005579207.2| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BLC1]
gi|254789603|sp|B8DW40.1|TRUA_BIFA0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219620534|gb|ACL28691.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis AD011]
gi|289178185|gb|ADC85431.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BB-12]
gi|340364572|gb|AEK29863.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium animalis subsp.
lactis CNCM I-2494]
gi|447219183|gb|AEN76174.2| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp.
lactis BLC1]
Length = 298
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++C +VA+ F R MVR LV V+ D D M R + P P+GL L
Sbjct: 216 LLCFTIVADAFARNMVRSLVGACVQVGMGKRDVDWFAGKMRVPLREGSTGPIAPQGLTLE 275
Query: 236 DVGY 239
+ Y
Sbjct: 276 HIAY 279
>gi|357060042|ref|ZP_09120816.1| tRNA pseudouridine synthase A [Alloprevotella rava F0323]
gi|355376932|gb|EHG24172.1| tRNA pseudouridine synthase A [Alloprevotella rava F0323]
Length = 245
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR---ATAPPAPP 229
G + E+ A+RFLR MVR +V TL+ G L + + R+ A A P
Sbjct: 176 GEDLWRFEITADRFLRNMVRAIVGTLIE---VGRGRMTLTQFEEVIARKDRCAAADSVPG 232
Query: 230 EGLCLVDVGY 239
L LVD+ Y
Sbjct: 233 NALFLVDIQY 242
>gi|319760619|ref|YP_004124557.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str.
BVAF]
gi|318039333|gb|ADV33883.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str.
BVAF]
Length = 255
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 60/224 (26%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N P I + VS + + FH FSA RRY Y + ND I S + +
Sbjct: 78 GVNRYLPRSICIRWVSLMKQDFHARFSAVSRRYYY-YIYND------KIRSAILFQK--- 127
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + +C+++ Q L G+ D
Sbjct: 128 ---------------------------TWHYTKLLDVCKMSRAAQYLLGE--------ND 152
Query: 139 TKASRNIG--PPTECF-IYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
A R+ G + C +YH R I C + +++ AN FL +MVR +V
Sbjct: 153 FSAFRSAGCQSYSRCRNLYHLRVIR-IGQCVI-----------IDIQANSFLYRMVRNIV 200
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+LV +L+L+ + R AP +GL L +V Y
Sbjct: 201 GSLVEVGCGNRPAIWILELLKSCKRSLAGMTAPADGLYLAEVKY 244
>gi|333998473|ref|YP_004531085.1| tRNA pseudouridine synthase A [Treponema primitia ZAS-2]
gi|333739873|gb|AEF85363.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA
pseudouridylate synthase I) (PSU-I) [Treponema primitia
ZAS-2]
Length = 280
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
+ E+ AN FL KMVR +V TL+ + L K++ + R P PP GL L
Sbjct: 215 TLIFEVQANAFLWKMVRSIVGTLLYYEEKRLPPEELQKIIVSGDRSLAGPTVPPNGLFLW 274
Query: 236 DVGY 239
V Y
Sbjct: 275 KVEY 278
>gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162]
Length = 246
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL MVR++ TL++ + + K++DA R + P AP GL L+
Sbjct: 181 IVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLTLM 240
Query: 236 DV 237
+
Sbjct: 241 GI 242
>gi|153840131|ref|ZP_01992798.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810]
gi|149746249|gb|EDM57337.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810]
Length = 142
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 154 YHARATEAILPC------PVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGAD 207
+ A +++ PC V HG+ + +++ AN F+ MVR + +L++
Sbjct: 33 FRAAHCQSLSPCRNLMHLNVTRHGD---YVVIDIKANAFVHHMVRNITGSLIKVGRGEEK 89
Query: 208 EDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + L++A R+ A EGL LVDV Y
Sbjct: 90 PEWIKWLLEAKDRKLAGATAKAEGLYLVDVDY 121
>gi|428221815|ref|YP_007105985.1| pseudouridylate synthase I [Synechococcus sp. PCC 7502]
gi|427995155|gb|AFY73850.1| pseudouridylate synthase I [Synechococcus sp. PCC 7502]
Length = 264
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+ ++ FL M+R+L+ LV + R APP+GLCL+D+G
Sbjct: 193 VEVRSSGFLYGMMRLLIGLLVEVGRKRLSVQEFTNIWQQRRRCDVKYAAPPQGLCLLDIG 252
Query: 239 Y 239
Y
Sbjct: 253 Y 253
>gi|399055838|ref|ZP_10743488.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|433543260|ref|ZP_20499670.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
gi|398046701|gb|EJL39295.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|432185389|gb|ELK42880.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
Length = 244
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
N FL MVR++V TLV D L K++ A R AP +GL + +V Y
Sbjct: 188 GNGFLYNMVRIIVGTLVEVGQGKRHPDELKKILAARDREMAGKTAPAKGLTMWEVVY 244
>gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174]
gi|149830420|gb|EDM85512.1| tRNA pseudouridine synthase A [Ruminococcus obeum ATCC 29174]
Length = 250
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + + FL MVR++ TL++ + + K++DA R + P AP GL L+
Sbjct: 185 IVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLTLM 244
Query: 236 DV 237
+
Sbjct: 245 GI 246
>gi|397690797|ref|YP_006528051.1| tRNA pseudouridine synthase A [Melioribacter roseus P3M]
gi|395812289|gb|AFN75038.1| tRNA pseudouridine synthase A [Melioribacter roseus P3M]
Length = 244
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A+RFL MVR L T+++ A L K++D R++ P GL L V Y
Sbjct: 188 ADRFLHGMVRALAGTILKAALNNESPGLLQKILDDKDRKSAGEALPANGLFLYKVRY 244
>gi|416051748|ref|ZP_11577796.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993181|gb|EGY34558.1| tRNA pseudouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 261
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
+N+ P I V V V FH FSA RRY YI N + S +
Sbjct: 77 GVNANLPDDIAVRWVKVVEADFHARFSATARRYRYILYCN-------KLRSAI------- 122
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
+ + C+ +++ L++D G LL F+
Sbjct: 123 ---LPQGVTHCHLELDHQLMHDAGQV------------------------LLGENDFSSF 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
A P ++H T G+ ++ V++ AN F+ MVR + +L
Sbjct: 156 RAAQCQSNTPWRN-VHHLHVTR-----------RGQYII-VDIQANAFVHHMVRNIAGSL 202
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + + L+ R AP A PEGL LV+V Y
Sbjct: 203 IEVGCGNQPVEWIKWLLAQKDRTLAAPTAKPEGLYLVNVIY 243
>gi|340347969|ref|ZP_08671066.1| tRNA pseudouridine synthase A [Prevotella dentalis DSM 3688]
gi|433652822|ref|YP_007296676.1| pseudouridylate synthase I [Prevotella dentalis DSM 3688]
gi|339608336|gb|EGQ13246.1| tRNA pseudouridine synthase A [Prevotella dentalis DSM 3688]
gi|433303355|gb|AGB29170.1| pseudouridylate synthase I [Prevotella dentalis DSM 3688]
Length = 248
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
E+ ANRFLR MVR +V TLV D +++ A R P GL L ++ Y
Sbjct: 189 EIAANRFLRNMVRAVVGTLVDVGRHRLSLDDFRRVVLAGTRSDAGESMPAHGLFLWEIAY 248
>gi|348687658|gb|EGZ27472.1| hypothetical protein PHYSODRAFT_293355 [Phytophthora sojae]
Length = 286
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+RF KMVR+LV T+V D + +++ A R APP+GL LV V Y
Sbjct: 229 GDRFRYKMVRILVGTIVDVGLGRLSPDTIPQILAAKKRGKAGQGAPPQGLTLVWVKY 285
>gi|323345677|ref|ZP_08085900.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269]
gi|323093791|gb|EFZ36369.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269]
Length = 243
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ ANRFLR MVR +V TL+ ++ +K+++ R P L L D+ Y
Sbjct: 185 ITANRFLRNMVRAVVGTLIDVGRHRISKEEFIKIVERRNRTGAGESMPAHALFLEDIKY 243
>gi|406945195|gb|EKD76770.1| tRNA pseudouridine synthase A [uncultured bacterium]
Length = 262
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+++ +E+ AN FL MVR +V L + +++++ + RR + + P GL L
Sbjct: 181 QMVVIEVRANAFLLHMVRNIVGVLQEIGEGEKKPEWVIEVLHSRDRRCASITSAPNGLYL 240
Query: 235 VDVGYTN 241
VD+ Y N
Sbjct: 241 VDIDYPN 247
>gi|406835551|ref|ZP_11095145.1| tRNA pseudouridine synthase A [Schlesneria paludicola DSM 18645]
Length = 316
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+C ++ A+ FL MVR +V TL+ + + ++++ R APP+GL L+
Sbjct: 254 VCFDVQADGFLYNMVRAIVGTLIHVGRGRWTPEDMRRILETGDRTHAGETAPPQGLYLMR 313
Query: 237 VGY 239
V Y
Sbjct: 314 VDY 316
>gi|320101703|ref|YP_004177294.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644]
gi|319748985|gb|ADV60745.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644]
Length = 275
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR + T V E + +++ A RR P APP+GL L+ V
Sbjct: 185 LEVEADGFLYNMVRSIAGTAVLVGLGDRPETFVAEVLHAQDRRLAGPTAPPQGLFLLQVR 244
Query: 239 Y 239
Y
Sbjct: 245 Y 245
>gi|221134792|ref|ZP_03561095.1| tRNA pseudouridine synthase A [Glaciecola sp. HTCC2999]
Length = 264
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ AN FL MVR + +L+ A L ++++ R A P GL VD
Sbjct: 183 VIIDIKANAFLHHMVRNIAGSLMLIGAGEQPLSWLQEILEIKDRTQAGVTAKPNGLYFVD 242
Query: 237 VGYTNFD-PQNSLIP 250
V Y FD P++ L P
Sbjct: 243 VDYPEFDLPKSPLGP 257
>gi|78048428|ref|YP_364603.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924659|ref|ZP_08186097.1| pseudouridylate synthase I [Xanthomonas perforans 91-118]
gi|346725544|ref|YP_004852213.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citrumelo
F1]
gi|123743895|sp|Q3BRL0.1|TRUA_XANC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|78036858|emb|CAJ24551.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544865|gb|EGD16210.1| pseudouridylate synthase I [Xanthomonas perforans 91-118]
gi|346650291|gb|AEO42915.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 257
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+V+ V++ AN FL MVR +V +L+ D + L+ R P APP+GL
Sbjct: 181 EVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGLVF 240
Query: 235 V 235
+
Sbjct: 241 I 241
>gi|339024892|ref|ZP_08646784.1| tRNA pseudouridine synthase A TruA [Acetobacter tropicalis NBRC
101654]
gi|338750102|dbj|GAA10088.1| tRNA pseudouridine synthase A TruA [Acetobacter tropicalis NBRC
101654]
Length = 291
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR +V TL + + + ++A R A P APPEGL L VGY
Sbjct: 229 ARSFLHHQVRNMVGTLSLVGQKRWKPERIAQALEAKSRCAAGPTAPPEGLYLTGVGY 285
>gi|373956092|ref|ZP_09616052.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603]
gi|373892692|gb|EHQ28589.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603]
Length = 268
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 183 ANRFLRKMVRVLVATLVR----EAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
ANRFL KM+RV+V L+ E + E L+K +A T PA P+GL L V
Sbjct: 187 ANRFLSKMIRVIVGRLISIGTGEMSVDEFEQNLIKPQNAQ----TISPAHPQGLYLSKVT 242
Query: 239 YTNFD 243
Y D
Sbjct: 243 YPYLD 247
>gi|410251032|gb|JAA13483.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 438
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
DI + INS P IR++ + +V+ F+ R Y Y+ P ++ D +V+ E
Sbjct: 176 DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHK----DRDVQDE 231
Query: 75 NFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICRVNL 120
+ S +Q N CY+ N F S + P++ + CR L
Sbjct: 232 TYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACRYIL 275
>gi|397487065|ref|XP_003814633.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
paniscus]
Length = 427
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
DI + INS P IR++ + +V+ F+ R Y Y+ P ++ D +V+ E
Sbjct: 165 DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHK----DRDVQDE 220
Query: 75 NFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICRVNL 120
+ S +Q N CY+ N F S + P++ + CR L
Sbjct: 221 TYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACRYIL 264
>gi|339499131|ref|YP_004697166.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
gi|338833480|gb|AEJ18658.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
Length = 266
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ + A+ FL VR++ LV+ + L++A R PAP +GLCL
Sbjct: 202 LHIYYTADSFLWNQVRIMTMVLVQAGLGTMSPTGVAALLEAKNRSLAPEPAPAKGLCLYS 261
Query: 237 VGY 239
V Y
Sbjct: 262 VSY 264
>gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
troglodytes]
gi|410207876|gb|JAA01157.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410293160|gb|JAA25180.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410341825|gb|JAA39859.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 427
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVE 74
DI + INS P IR++ + +V+ F+ R Y Y+ P ++ D +V+ E
Sbjct: 165 DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHK----DRDVQDE 220
Query: 75 NFHTSNNVGKQSN---GCYENIENLLINDEGGFGSHEKPRNFTICRVNL 120
+ S +Q N CY+ N F S + P++ + CR L
Sbjct: 221 TYRLSAETLQQVNRLLACYKGTHNFH-----NFTSQKGPQDPSACRYIL 264
>gi|423140991|ref|ZP_17128629.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053545|gb|EHY71436.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 270
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---PYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD 243
A A EGL LV V Y + FD
Sbjct: 235 LAAATAKAEGLYLVAVDYPDRFD 257
>gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
Length = 470
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 33/235 (14%)
Query: 20 INSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTS 79
+++A P IRV+ + V++ F+ + R Y Y+ P R +S S
Sbjct: 157 VDAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPTFIFGKRMRS----------SAS 206
Query: 80 NNVGKQSNGCYENIENLLINDEGGFGSH--------EKPRNFTICRVNLLLQRLEGKLLS 131
N KQ+ G + NL ++E GF S+ E + F + + +L++L L
Sbjct: 207 KNEEKQAEGTNQWPSNLRDSEE-GFDSNVVIDNTTLEAHKAFRLS--DEILEQLNATLKQ 263
Query: 132 Y---KTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
Y F T P FI + EA P ND R + +V FL
Sbjct: 264 YVGTHNFHNFTSKMEPTNPQANRFII---SFEAERPFVQNDMEWVR----LRVVGQSFLL 316
Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD 243
+R ++ T V + +D + + M+ T + P AP GL L + ++
Sbjct: 317 HHIRKMIGTAVEVVSGVSDPSTIERAMELT--KMDLPKAPSVGLYLAQAHFEVYN 369
>gi|261409491|ref|YP_003245732.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10]
gi|329922021|ref|ZP_08277814.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5]
gi|261285954|gb|ACX67925.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10]
gi|328942404|gb|EGG38668.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5]
Length = 263
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ + N FL+ MVR+++ TL+ D + +++A R A P A +GL L
Sbjct: 191 IIHTYVSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKVILEAQNRAAAGPTAMGKGLMLW 250
Query: 236 DVGY 239
+V Y
Sbjct: 251 EVDY 254
>gi|424792108|ref|ZP_18218375.1| tRNA pseudouridine synthase A [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433676759|ref|ZP_20508828.1| tRNA pseudouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440730818|ref|ZP_20910885.1| tRNA pseudouridine synthase A [Xanthomonas translucens DAR61454]
gi|422797238|gb|EKU25603.1| tRNA pseudouridine synthase A [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430818126|emb|CCP39154.1| tRNA pseudouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440376926|gb|ELQ13586.1| tRNA pseudouridine synthase A [Xanthomonas translucens DAR61454]
Length = 257
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 137 RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVA 196
+D A R+I +C HAR + V GE V+ V++ AN FL MVR +V
Sbjct: 152 QDFGAFRSI----QCQALHAR--RELQAIAVTRLGE---VVEVQVQANAFLHHMVRNIVG 202
Query: 197 TLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNF 242
+L+ A + +L+ R P APP+GL V Y +
Sbjct: 203 SLIMVGAGDKPVSWIGELLAGRDRSVAGPTAPPQGLVFVGPLYPDI 248
>gi|417392336|ref|ZP_12155216.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353612314|gb|EHC64716.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 270
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---PYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD 243
A A EGL LV V Y + FD
Sbjct: 235 LAAATAKAEGLYLVAVDYPDRFD 257
>gi|254510182|ref|ZP_05122249.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11]
gi|221533893|gb|EEE36881.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11]
Length = 255
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
A FL VR V TL R A + + ++A R A P PP+GL L VGY
Sbjct: 193 ARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPPQGLYLARVGY 249
>gi|432765702|ref|ZP_20000140.1| tRNA pseudouridine synthase A [Escherichia coli KTE48]
gi|431309877|gb|ELF98070.1| tRNA pseudouridine synthase A [Escherichia coli KTE48]
Length = 270
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGY 239
A A EGL LV V Y
Sbjct: 235 LAAATAKAEGLYLVAVDY 252
>gi|401678070|ref|ZP_10810040.1| tRNA pseudouridine synthase A [Enterobacter sp. SST3]
gi|400214678|gb|EJO45594.1| tRNA pseudouridine synthase A [Enterobacter sp. SST3]
Length = 270
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ A E + L+ A R A A EGL LV
Sbjct: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIADLLAAKDRTLAAATAKAEGLYLVS 249
Query: 237 VGYTN-FD 243
V Y + FD
Sbjct: 250 VDYPDRFD 257
>gi|372489802|ref|YP_005029367.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
gi|359356355|gb|AEV27526.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
Length = 275
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 83/242 (34%), Gaps = 72/242 (29%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF---PLNDGENREQSIDSEVEVEN 75
+NS P + V V FH FSA+ RRY Y+ P+ G + V
Sbjct: 89 GVNSHLPDGVAVRWAQAVPADFHARFSARGRRYRYLLLNRPVRPGL-------AAGRVGW 141
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
FH +V K + +LL+ G H+ + TF
Sbjct: 142 FHLPLDVAKM-----QEAADLLL------GEHD-----------------------FSTF 167
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV-----ANRFLRKM 190
RA E PV + + R ELV A FL M
Sbjct: 168 ---------------------RAAECQAKTPVKELRQARVSRQGELVVFDFEATAFLHHM 206
Query: 191 VRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFD--PQNSL 248
+R LV +LV + + +L+ A RR AP P GL L V Y P+ ++
Sbjct: 207 IRNLVGSLVYVGKGKHEPAWIGELLAARDRRLAAPTFSPSGLYLAGVSYEPHWGLPETTV 266
Query: 249 IP 250
+P
Sbjct: 267 LP 268
>gi|432450472|ref|ZP_19692736.1| tRNA pseudouridine synthase A [Escherichia coli KTE193]
gi|433034151|ref|ZP_20221866.1| tRNA pseudouridine synthase A [Escherichia coli KTE112]
gi|430979455|gb|ELC96231.1| tRNA pseudouridine synthase A [Escherichia coli KTE193]
gi|431550537|gb|ELI24527.1| tRNA pseudouridine synthase A [Escherichia coli KTE112]
Length = 270
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A R
Sbjct: 178 VMHINVTRHG---PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234
Query: 222 ATAPPAPPEGLCLVDVGYTN-FD 243
A A EGL LV V Y + FD
Sbjct: 235 LAAATAKAEGLYLVAVDYPDRFD 257
>gi|313680524|ref|YP_004058263.1| tRNA pseudouridine synthase a [Oceanithermus profundus DSM 14977]
gi|313153239|gb|ADR37090.1| tRNA pseudouridine synthase A [Oceanithermus profundus DSM 14977]
Length = 251
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY 53
+ A+N+ P +RV+ +V +H +SA+WRRYLY
Sbjct: 76 VPQALNALLPPDVRVLEAEEVPPDWHARYSARWRRYLY 113
>gi|256822702|ref|YP_003146665.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069]
gi|256796241|gb|ACV26897.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069]
Length = 264
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + +++ AN FL MVR + +L+ + +L+D R A A P GL L
Sbjct: 180 EYVVIDIKANAFLHHMVRNIAGSLIEIGRYNQKPEWAKQLLDGKDRTQAASTASPNGLYL 239
Query: 235 VDVGY 239
VDV Y
Sbjct: 240 VDVEY 244
>gi|289663172|ref|ZP_06484753.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 257
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+V+ V++ AN FL MVR +V +L+ D + L+ R P APP+GL
Sbjct: 181 EVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGPTAPPQGLVF 240
Query: 235 V 235
+
Sbjct: 241 I 241
>gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
gi|259550311|sp|C6BW69.1|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
Length = 271
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
G+ + M +E+ + FL++MVR +V LVR A+ + + L+ R A AP +
Sbjct: 178 GQTEQEMILEVCGSGFLKQMVRNMVGCLVRIGRGKAEPETVRSLLQMKDRTAAPATAPAQ 237
Query: 231 GLCLVDVGY 239
GLC+ V Y
Sbjct: 238 GLCMAGVYY 246
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,922,685,644
Number of Sequences: 23463169
Number of extensions: 154254667
Number of successful extensions: 352444
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 350395
Number of HSP's gapped (non-prelim): 2278
length of query: 250
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 111
effective length of database: 9,097,814,876
effective search space: 1009857451236
effective search space used: 1009857451236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)