BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044732
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M7K|A Chain A, Solution Structure Of The Sodd Bag Domain
Length = 99
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLIND--------EGGFGSHEKPRNFTICRVNLL 121
E EVE F VGK+++ Y +E +L + GG S + R +C++ +
Sbjct: 37 EQEVEEF-----VGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAI 91
Query: 122 LQRLEGK 128
L++LE K
Sbjct: 92 LEKLEKK 98
>pdb|1M62|A Chain A, Solution Structure Of The Bag Domain From Bag4SODD
Length = 87
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 70 EVEVENFHTSNNVGKQSNGCYENIENLLIND--------EGGFGSHEKPRNFTICRVNLL 121
E EVE F VGK+++ Y +E +L + GG S + R +C++ +
Sbjct: 24 EQEVEEF-----VGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAI 78
Query: 122 LQRLEGK 128
L++LE K
Sbjct: 79 LEKLEKK 85
>pdb|1UYQ|A Chain A, Mutated B-Glucosidase A From Paenibacillus Polymyxa
Showing Increased Stability
Length = 447
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 44 FSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG 103
FS W R IFP DGE ++ +D V + N + + ++ L D GG
Sbjct: 77 FSVSWPR---IFPNGDGEVNQEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL-QDAGG 132
Query: 104 FGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+G+ + F + + + GK+ + TF
Sbjct: 133 WGNRRTIQAF-VQFAETMFREFHGKIQHWLTF 163
>pdb|1BGA|A Chain A, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|B Chain B, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|C Chain C, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|D Chain D, Beta-Glucosidase A From Bacillus Polymyxa
Length = 447
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 44 FSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG 103
FS W R IFP DGE ++ +D V + N + + ++ L D GG
Sbjct: 77 FSVSWPR---IFPNGDGEVNQEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL-QDAGG 132
Query: 104 FGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+G+ + F + + + GK+ + TF
Sbjct: 133 WGNRRTIQAF-VQFAETMFREFHGKIQHWLTF 163
>pdb|1BGG|A Chain A, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|B Chain B, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|C Chain C, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|D Chain D, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
Length = 448
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 44 FSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG 103
FS W R IFP DGE ++ +D V + N + + ++ L D GG
Sbjct: 78 FSVSWPR---IFPNGDGEVNQEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL-QDAGG 133
Query: 104 FGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+G+ + F + + + GK+ + TF
Sbjct: 134 WGNRRTIQAF-VQFAETMFREFHGKIQHWLTF 164
>pdb|1TR1|A Chain A, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|B Chain B, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|C Chain C, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|D Chain D, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
Length = 447
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 44 FSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG 103
FS W R IFP DGE ++ +D V + N + + ++ L D GG
Sbjct: 77 FSVSWPR---IFPNGDGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL-QDAGG 132
Query: 104 FGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+G+ + F + + + GK+ + TF
Sbjct: 133 WGNRRTIQAF-VQFAETMFREFHGKIQHWLTF 163
>pdb|1E4I|A Chain A, 2-Deoxy-2-Fluoro-Beta-D-GlucosylENZYME INTERMEDIATE
Complex Of The Beta-Glucosidase From Bacillus Polymyxa
Length = 447
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 44 FSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGG 103
FS W R IFP DGE ++ +D V + N + + ++ L D GG
Sbjct: 77 FSVSWPR---IFPNGDGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL-QDAGG 132
Query: 104 FGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+G+ + F + + + GK+ + TF
Sbjct: 133 WGNRRTIQAF-VQFAETMFREFHGKIQHWLTF 163
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 120 LLLQRLEGKLLSYKTFARD--------TKASRNIGPPTECFIYHARATEAILPCPVNDHG 171
LL +R +G+ +++ T R+ + A+ P TEC + A A PC + D G
Sbjct: 58 LLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLG 117
Query: 172 EGRKVMCVELVANR 185
G + + L + R
Sbjct: 118 TGTGAIALALASER 131
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 120 LLLQRLEGKLLSYKTFARD--------TKASRNIGPPTECFIYHARATEAILPCPVNDHG 171
LL +R +G+ +++ T R+ + A+ P TEC + A A PC + D G
Sbjct: 58 LLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLG 117
Query: 172 EGRKVMCVELVANR 185
G + + L + R
Sbjct: 118 TGTGAIALALASER 131
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 81 NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTK 140
N GKQ GC +NI + +++ +G + E R+F C L SYK +A D+
Sbjct: 230 NGGKQMPGCQKNILSQIVDIDGIW---EGTRDFVACN----------HLRSYKYYA-DSI 275
Query: 141 ASRNIGPPTECFIYHARATEAILPCP 166
+ + C Y+ PCP
Sbjct: 276 LNPDGFAGFPCDSYNVFTANKCFPCP 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,366,991
Number of Sequences: 62578
Number of extensions: 224243
Number of successful extensions: 316
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 10
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)