BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044732
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TU07|TRUA_RHOBA tRNA pseudouridine synthase A OS=Rhodopirellula baltica (strain
SH1) GN=truA PE=3 SV=1
Length = 276
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 49/241 (20%)
Query: 3 ILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEN 62
+L W+ D ++ AINS P IRV +V + FHP A ++Y Y+
Sbjct: 71 VLPVWKADT--VALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLV------- 121
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLL 122
Q G + N +N GG H +
Sbjct: 122 ----------------------QVGGSRDPFANRFVNRVGGPIDHSA------------M 147
Query: 123 QRLEGKLLSYKTFA--RDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVE 180
Q K + F + T A R P T I+ AR + P EG C E
Sbjct: 148 QSAAAKFVGRHDFKAFQGTGAER---PSTVRTIHSARWIPRVATGPTGAELEGEH-WCFE 203
Query: 181 LVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYT 240
+ FL MVR L+ T++ + + +++ + R+ P APP+GL L V Y
Sbjct: 204 IDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGPTAPPQGLFLCRVDYP 263
Query: 241 N 241
+
Sbjct: 264 D 264
>sp|Q2S4S9|TRUA_SALRD tRNA pseudouridine synthase A OS=Salinibacter ruber (strain DSM
13855 / M31) GN=truA PE=3 SV=1
Length = 265
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
VE+V RFL MVR LV TLV DAL ++ A RRA P PPEGL L V
Sbjct: 184 VEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEGLVLEAVR 243
Query: 239 YTN--FD--PQNSLIP 250
Y FD P + L+P
Sbjct: 244 YEQPLFDDGPGDPLVP 259
>sp|P57861|TRUA_PASMU tRNA pseudouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=truA PE=3 SV=1
Length = 264
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
+ + V++ AN F+ MVR +V +L+ A + + L+ RR AP A PEGL L
Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPEGLYL 238
Query: 235 VDVGY-TNFD-PQNSLIP 250
V+V Y T F PQN+L P
Sbjct: 239 VNVSYPTQFQLPQNALGP 256
>sp|Q5FPX3|TRUA_GLUOX tRNA pseudouridine synthase A OS=Gluconobacter oxydans (strain
621H) GN=truA PE=3 SV=1
Length = 275
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 140 KASRNIGPPTECFIYHARATEAILPCP----VNDHGEGRKVMCVELVANRFLRKMVRVLV 195
+A+ ++ P + + A A +A P +N H +G VM ++ A FL VR +
Sbjct: 165 QAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHRDGELVM-IDTKARSFLHHQVRNMA 223
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGYTNFDPQN 246
TL+ + + ++++++A R A APPEGLCL+DVGY + DP N
Sbjct: 224 GTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLCLMDVGYPD-DPFN 273
>sp|A4J151|TRUA_DESRM tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain
MI-1) GN=truA PE=3 SV=1
Length = 247
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 54/221 (24%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHT 78
A+N PG I+V+ +V FH FSA + Y Y SI + FH
Sbjct: 81 ALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRY------------SIYHHRVMSPFHR 128
Query: 79 SNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARD 138
CY HE PR + + EG T+ D
Sbjct: 129 YY--------CY----------------HE-PRRLDVNAMQ------EGAAYLLGTY--D 155
Query: 139 TKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATL 198
K+ + G P + I + I PV + + L N FL MVR++ TL
Sbjct: 156 FKSFQAQGTPVKDTIRTIYRADIIEDAPV---------INLYLRGNGFLYNMVRIITGTL 206
Query: 199 VREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+ + ++K++++ R APP+GLCL++V Y
Sbjct: 207 LNIGFGKIKPEDMVKIIESKNRTLAGTTAPPQGLCLMEVEY 247
>sp|Q73KE3|TRUA_TREDE tRNA pseudouridine synthase A OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=truA PE=3 SV=1
Length = 268
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 66/237 (27%)
Query: 9 KDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
K ++ S+ A+NS P IRV+ ++VS + H F+A R Y + + G+
Sbjct: 80 KSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRT--YRYKIKCGKT------ 131
Query: 69 SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICR------VNLLL 122
+HE+P + I R +N +
Sbjct: 132 -----------------------------------IFAHEQPYTWHIRRYPDIAALNEMA 156
Query: 123 QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELV 182
L G+L D A G + I +R + + ND+ + E+
Sbjct: 157 SCLSGEL--------DCTAFSAAGDQS---ISKSRYIKKAVFFIENDY------LIFEIC 199
Query: 183 ANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
AN FL KMVR +V TL+ GA + ++++ R P APP+GL L + Y
Sbjct: 200 ANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGLFLWSIEY 256
>sp|Q8U2C1|TRUA_PYRFU tRNA pseudouridine synthase A OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=truA PE=3 SV=1
Length = 266
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRA-TAPPAPPEGLCL 234
V+ VE+ FL +MVR +V+ LV + E+ ++++++ ++ PPAPPEGL L
Sbjct: 159 VVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLNGKFEKSRKVPPAPPEGLLL 218
Query: 235 VDVGYTNFDPQ 245
D+ Y N + Q
Sbjct: 219 WDIKYENVEFQ 229
>sp|A8FTU0|TRUA_SHESH tRNA pseudouridine synthase A OS=Shewanella sediminis (strain
HAW-EB3) GN=truA PE=3 SV=1
Length = 261
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V TL+ + + +L+D R AP A P GL +VD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAPTAKPNGLYMVD 240
Query: 237 VGY 239
V Y
Sbjct: 241 VTY 243
>sp|Q4QL79|TRUA_HAEI8 tRNA pseudouridine synthase A OS=Haemophilus influenzae (strain
86-028NP) GN=truA PE=3 SV=1
Length = 269
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLN------------------DGEN 62
N+ P I V QV FH FSA RRY YI N D E
Sbjct: 79 NAHLPDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKLRSAILAGGITHCHLDLDAEK 138
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGF 104
Q+ + ++F + QS+ + N+ +L ++ G +
Sbjct: 139 MHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIGKY 180
>sp|A5UIY2|TRUA_HAEIG tRNA pseudouridine synthase A OS=Haemophilus influenzae (strain
PittGG) GN=truA PE=3 SV=1
Length = 269
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ A + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLN------------------DGEN 62
N+ P I V QV FH FSA RRY YI N D E
Sbjct: 79 NAHLPDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKLRSAILAGGITHCHLDLDAEK 138
Query: 63 REQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGF 104
Q+ + ++F + QS+ + N+ +L ++ G +
Sbjct: 139 MHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIGKY 180
>sp|B2A4Q5|TRUA_NATTJ tRNA pseudouridine synthase A OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=truA
PE=3 SV=1
Length = 253
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 171 GEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPE 230
GE ++ +++ N FL KMVR+LV TL++ + +A+ K + R P A P+
Sbjct: 184 GEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTASPQ 243
Query: 231 GLCLVDVGY 239
GL L + Y
Sbjct: 244 GLVLQQIWY 252
>sp|Q47XK4|TRUA_COLP3 tRNA pseudouridine synthase A OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=truA PE=3 SV=1
Length = 259
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 158 ATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDA 217
A I C V G+ + V++ AN FL MVR +V +L+R + + +++ A
Sbjct: 165 AVRTIKHCRVTRQGD---YLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLA 221
Query: 218 TCRRATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
R APPEGL VDV Y NF+ P++ L P
Sbjct: 222 KNRCVAGVTAPPEGLYFVDVDYPENFELPKSRLGP 256
>sp|B9M6W5|TRUA_GEOSF tRNA pseudouridine synthase A OS=Geobacter sp. (strain FRC-32)
GN=truA PE=3 SV=1
Length = 244
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 140 KASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLV 199
+AS + T ++H + ++ HG G FL+ MVRV+ TLV
Sbjct: 157 RASNCVAKTTIRRMFHVSVAKVGDSVIIDVHGSG------------FLKNMVRVIAGTLV 204
Query: 200 REAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
D A+ L+ R A+ APP+GLCL++V Y
Sbjct: 205 AVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLMEVFY 244
>sp|B1KKN8|TRUA_SHEWM tRNA pseudouridine synthase A OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=truA PE=3 SV=1
Length = 261
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ + + +L+ R AP A P GL +VD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDRSKAAPTAKPNGLYMVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PEHFQLP 250
>sp|P45291|TRUA_HAEIN tRNA pseudouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=truA PE=3 SV=1
Length = 269
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K + V++ AN F+ MVR +V +L+ + + L++ R+ AP A P+GL L
Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238
Query: 235 VDVGYTNFDPQNSLIP 250
VDV Y PQ IP
Sbjct: 239 VDVIY----PQKFDIP 250
>sp|B8G6P6|TRUA_CHLAD tRNA pseudouridine synthase A OS=Chloroflexus aggregans (strain
MD-66 / DSM 9485) GN=truA PE=3 SV=1
Length = 278
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +EL AN FL+ MVR++V TL+ D +++ RR P AP GL
Sbjct: 183 RRLLAIELAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPAHGLT 242
Query: 234 LVDVGY 239
L V Y
Sbjct: 243 LTAVRY 248
>sp|Q3A3B5|TRUA_PELCD tRNA pseudouridine synthase A OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=truA PE=3 SV=1
Length = 252
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
V++ + FLR MVR++V TLV + + ++ CR+ + AP +GLCL++V
Sbjct: 184 VDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVA 243
Query: 239 YTNFD 243
Y D
Sbjct: 244 YAPQD 248
>sp|Q8KDR7|TRUA_CHLTE tRNA pseudouridine synthase A OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=truA PE=3 SV=1
Length = 247
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 78/219 (35%), Gaps = 56/219 (25%)
Query: 21 NSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVENFHTSN 80
NS P IR+ ++ Q FH FSA R Y Y +IDS
Sbjct: 85 NSLLPSTIRINAMRQAPESFHARFSATSREYRYFL-----LEHPSAIDSRFA-------- 131
Query: 81 NVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTK 140
GC SH KP + R+ L+L + F+++T
Sbjct: 132 -------GC----------------SHGKPDVGAMNRLALMLIGTH----DFAAFSKETP 164
Query: 141 ASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVR 200
T C + AR + GR + ANRFLR MVR LVA ++
Sbjct: 165 DQYG----TLCTVTAARWYRS-----------GR-FHVFRIEANRFLRSMVRFLVAGMIE 208
Query: 201 EAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
+E A +++++ R PA GL L V Y
Sbjct: 209 VGMGRLEEGAFARMLESGHRPPKLKPADAAGLFLWKVRY 247
>sp|B9LJG1|TRUA_CHLSY tRNA pseudouridine synthase A OS=Chloroflexus aurantiacus (strain
ATCC 29364 / DSM 637 / Y-400-fl) GN=truA PE=3 SV=1
Length = 278
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +E+ AN FL+ MVR++V TL+ D +++ + RR P AP GL
Sbjct: 183 RRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLT 242
Query: 234 LVDVGY 239
L V Y
Sbjct: 243 LTAVRY 248
>sp|A9WH95|TRUA_CHLAA tRNA pseudouridine synthase A OS=Chloroflexus aurantiacus (strain
ATCC 29366 / DSM 635 / J-10-fl) GN=truA PE=3 SV=1
Length = 278
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
R+++ +E+ AN FL+ MVR++V TL+ D +++ + RR P AP GL
Sbjct: 183 RRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLT 242
Query: 234 LVDVGY 239
L V Y
Sbjct: 243 LTAVRY 248
>sp|A5GB00|TRUA_GEOUR tRNA pseudouridine synthase A OS=Geobacter uraniireducens (strain
Rf4) GN=truA PE=3 SV=1
Length = 244
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ +++ + FL+ MVR++ TL + DA+ L+ + R A+ APP+GLCLV+
Sbjct: 182 VIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDRAASGITAPPQGLCLVE 241
Query: 237 VGY 239
V Y
Sbjct: 242 VFY 244
>sp|B7K222|TRUA_CYAP8 tRNA pseudouridine synthase A OS=Cyanothece sp. (strain PCC 8801)
GN=truA PE=3 SV=1
Length = 293
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR+LV LV + + ++ R A AP +GLCL+ VG
Sbjct: 193 LEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLCLLRVG 252
Query: 239 YTNF 242
Y F
Sbjct: 253 YEEF 256
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 18 DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF 55
D +N+ P I + +QV +H FSA+WRRY Y F
Sbjct: 85 DILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRYTF 122
>sp|Q7M7J4|TRUA_VIBVY tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain YJ016)
GN=truA PE=3 SV=1
Length = 264
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V HG + +++ AN F+ MVR + +L+ D + + L++A R+ P
Sbjct: 174 VTRHGH---YVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPT 230
Query: 227 APPEGLCLVDVGY-TNFD-PQNSLIP 250
A EGL LVDV Y FD P+ S+ P
Sbjct: 231 AKAEGLYLVDVDYPEEFDLPRESIGP 256
>sp|Q8CWK3|TRUA_VIBVU tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=truA PE=3 SV=1
Length = 264
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V HG + +++ AN F+ MVR + +L+ D + + L++A R+ P
Sbjct: 174 VTRHGH---YVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPT 230
Query: 227 APPEGLCLVDVGY-TNFD-PQNSLIP 250
A EGL LVDV Y FD P+ S+ P
Sbjct: 231 AKAEGLYLVDVDYPEEFDLPRESIGP 256
>sp|Q7MBB9|TRUA_GLOVI tRNA pseudouridine synthase A OS=Gloeobacter violaceus (strain PCC
7421) GN=truA PE=3 SV=1
Length = 304
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
EG ++ + + AN FL M+R+L+ L + + L A R APP+G
Sbjct: 192 EGEQI-AIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQG 250
Query: 232 LCLVDVGYTNFDP 244
LCLV VGY + DP
Sbjct: 251 LCLVGVGYPD-DP 262
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MIILDTWRKDVKPSDIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLY 53
++ DT K + P +NS P I V + + VS +H F+A WR Y Y
Sbjct: 74 VVHFDT-HKKLAPETWVRGLNSLLPDDIAVRAAAYVSDHWHARFTALWREYRY 125
>sp|Q8XLQ0|TRUA1_CLOPE tRNA pseudouridine synthase A 1 OS=Clostridium perfringens (strain
13 / Type A) GN=truA1 PE=3 SV=1
Length = 248
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 172 EGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEG 231
E ++ +++ N FL MVR++V TLV + + +++A R + AP G
Sbjct: 181 ENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240
Query: 232 LCLVDVGY 239
LCL+++ Y
Sbjct: 241 LCLLELNY 248
>sp|B0K5S6|TRUA_THEPX tRNA pseudouridine synthase A OS=Thermoanaerobacter sp. (strain
X514) GN=truA PE=3 SV=1
Length = 244
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TL ED + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLIKII 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYI 54
A+NS P I V+ V FH +SAK +RY YI
Sbjct: 78 ALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYI 113
>sp|B0KCN3|TRUA_THEP3 tRNA pseudouridine synthase A OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=truA PE=3
SV=1
Length = 244
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ AN FL MVR++V TL ED + ++ + R APP+GL L+ +
Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLIKII 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYI 54
A+NS P I V+ V FH +SAK +RY YI
Sbjct: 78 ALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYI 113
>sp|Q084R8|TRUA_SHEFN tRNA pseudouridine synthase A OS=Shewanella frigidimarina (strain
NCIMB 400) GN=truA PE=3 SV=1
Length = 261
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VN +G VM V++ AN FL MVR +V +L++ + + +L R+ AP
Sbjct: 172 VNVTRQGMYVM-VDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPT 230
Query: 227 APPEGLCLVDVGYTNFDPQNSLIP 250
A P GL LVDV Y P++ +P
Sbjct: 231 AKPNGLYLVDVTY----PEHYQLP 250
>sp|P60350|TRUA_GEOSL tRNA pseudouridine synthase A OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=truA PE=3 SV=1
Length = 244
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 54/224 (24%)
Query: 16 IEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSIDSEVEVEN 75
D +N+ P I V S + F+P F+A + Y Y ++ GE R V +++
Sbjct: 75 FSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYT--IHRGERRS----PLVRLQS 128
Query: 76 FHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTF 135
+H + NL R + L T
Sbjct: 129 WHVRGAL------------------------------------NLAAMREAARHL---TG 149
Query: 136 ARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLV 195
RD + R G I A E ++D GE ++ V++ + FLR MVR++V
Sbjct: 150 ERDFASFRTAGCAARTTIRRVDAVE------ISDDGE---MLTVDVHGSGFLRNMVRIMV 200
Query: 196 ATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
TLV + + +++ P APP+GLCL V +
Sbjct: 201 GTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLCLQKVRF 244
>sp|A1S7J9|TRUA_SHEAM tRNA pseudouridine synthase A OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=truA PE=3 SV=1
Length = 261
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
V+ HG + V++ AN FL MVR +V +L+ D + L++A R A
Sbjct: 174 VSRHG---MYIVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAAT 230
Query: 227 APPEGLCLVDVGY 239
A P GL LVDV Y
Sbjct: 231 AKPHGLYLVDVTY 243
>sp|P73295|TRUA_SYNY3 tRNA pseudouridine synthase A OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=truA PE=3 SV=1
Length = 275
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATC---RRATAPPAPPEGL 232
++ +E+ AN FL MVR+LV L A G+ + +L D R AP +GL
Sbjct: 191 MVYLEIQANGFLYGMVRLLVGML---AEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGL 247
Query: 233 CLVDVGYTNFDPQNSL 248
CL+ VGY NF +SL
Sbjct: 248 CLLRVGYENFPLPDSL 263
>sp|A3DJK8|TRUA_CLOTH tRNA pseudouridine synthase A OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=truA PE=3 SV=1
Length = 244
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
K++ E+ + FL MVR++V TL+ D + +++++ R+ AP EGL L
Sbjct: 180 KIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLYL 239
Query: 235 VDVGY 239
V+V Y
Sbjct: 240 VEVYY 244
>sp|Q3J0D9|TRUA_RHOS4 tRNA pseudouridine synthase A OS=Rhodobacter sphaeroides (strain
ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=truA PE=3
SV=1
Length = 255
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P +PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPPQGLYLTGVGY 249
>sp|A0B7V0|TRUA_METTP tRNA pseudouridine synthase A OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=truA PE=3 SV=1
Length = 267
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
I+ VN H ++ ++ A F+ MVR +V L D +L+L+D +
Sbjct: 150 IISIDVNAHC---GIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPSTPH 206
Query: 222 ATAPPAPPEGLCLVDVGYTNFD 243
AP APPEGL L+DVGY++ +
Sbjct: 207 G-APTAPPEGLMLMDVGYSDLE 227
>sp|B8CPW5|TRUA_SHEPW tRNA pseudouridine synthase A OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=truA PE=3 SV=1
Length = 261
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V TL+ ++ + L+ R A A P GL LVD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PEHFQLP 250
>sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila
(strain UWE25) GN=truA1 PE=3 SV=1
Length = 256
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E + FL KMVR +V TL+ A+ + + ++ A RR + APPEGL L+ V
Sbjct: 188 LEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEGLFLIQVF 247
Query: 239 YTN 241
Y N
Sbjct: 248 YEN 250
>sp|Q12P55|TRUA_SHEDO tRNA pseudouridine synthase A OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=truA PE=3 SV=1
Length = 261
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 167 VNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPP 226
VN +G +M V++ AN FL MVR +V +L+ + + KL+ RR A
Sbjct: 172 VNVTRQGMYIM-VDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAAT 230
Query: 227 APPEGLCLVDVGYTNFDPQNSLIP 250
A P GL LVDV Y P+ IP
Sbjct: 231 AKPNGLYLVDVTY----PEEFAIP 250
>sp|A6T009|TRUA_JANMA tRNA pseudouridine synthase A OS=Janthinobacterium sp. (strain
Marseille) GN=truA PE=3 SV=1
Length = 271
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 176 VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLV 235
++ L AN FL MVR +V +L+ D L +L+D R+ AP P+GL L
Sbjct: 191 LIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAAPTFMPDGLYLA 250
Query: 236 DVGYTNFDPQNSL 248
+ Y DP+ L
Sbjct: 251 KIDY---DPKWQL 260
>sp|A6LLJ7|TRUA_THEM4 tRNA pseudouridine synthase A OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=truA PE=3 SV=1
Length = 244
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 174 RKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLC 233
++++ + + FLR MVR +V +LVR + + K+++A R+ A APP GL
Sbjct: 179 KELILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAGTAPPHGLY 238
Query: 234 LVDV 237
L V
Sbjct: 239 LYKV 242
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 DIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLND 59
DI++A+N+ P I V +V + F+P F AK R Y Y+ N+
Sbjct: 75 DIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTNE 119
>sp|Q8TU65|TRUA_METAC tRNA pseudouridine synthase A OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=truA PE=3
SV=1
Length = 269
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 175 KVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCL 234
++ +++V N FL MVR +V L D D LL++++ PAPP GL L
Sbjct: 164 EITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIEPAPPYGLTL 223
Query: 235 VDVGY 239
+ V Y
Sbjct: 224 MGVNY 228
>sp|A8ADR1|TRUA_CITK8 tRNA pseudouridine synthase A OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=truA PE=3 SV=1
Length = 270
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 162 ILPCPVNDHGEGRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRR 221
++ V HG + V++ AN F+ MVR +V +L+ A E + +L+ A RR
Sbjct: 178 VMHINVTRHG---AYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRR 234
Query: 222 ATAPPAPPEGLCLVDVGY-TNFD-PQNSLIP 250
+A A EGL LV V Y FD P+ L P
Sbjct: 235 LSAATAKAEGLYLVAVDYPERFDLPKTPLGP 265
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 19 AINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIF-------------------PLND 59
+N+ PG I V V V FH FSA RRY YI PL D
Sbjct: 86 GVNANLPGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLRPAILGHGVTHFYEPL-D 144
Query: 60 GENREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGF 104
E ++ + +F + V QS + N+ ++ + G +
Sbjct: 145 AERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVTRHGAY 189
>sp|Q8YPK5|TRUA_NOSS1 tRNA pseudouridine synthase A OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=truA PE=3 SV=1
Length = 282
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 179 VELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVG 238
+E+ A+ FL MVR+LV LV+ + +L R AP +GLCL+ VG
Sbjct: 194 IEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLCLLRVG 253
Query: 239 YTNF 242
Y +F
Sbjct: 254 YPDF 257
>sp|A8H305|TRUA_SHEPA tRNA pseudouridine synthase A OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=truA PE=3 SV=1
Length = 261
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+CV++ AN FL MVR +V +L+ + + +L+ R A A P GL LVD
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLLEVGLGNQSVEWIEQLLALKDRNKAAATAKPNGLYLVD 240
Query: 237 VGYTNFDPQNSLIP 250
V Y P++ +P
Sbjct: 241 VTY----PESYQLP 250
>sp|Q6MQH6|TRUA_BDEBA tRNA pseudouridine synthase A OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=truA PE=3
SV=1
Length = 262
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 172 EGRK--VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPP 229
E RK VM + + FL++MVR +V T + G D + +++ A R PPAP
Sbjct: 182 EWRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPA 241
Query: 230 EGLCLVDVGY 239
+GL L+ V Y
Sbjct: 242 QGLYLMKVYY 251
>sp|B0USP1|TRUA_HAES2 tRNA pseudouridine synthase A OS=Haemophilus somnus (strain 2336)
GN=truA PE=3 SV=1
Length = 269
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + + L+ R AP A P+GL LV+
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVE 240
Query: 237 VGYTN-FD-PQNSLIP 250
V Y N F+ P+N L P
Sbjct: 241 VKYPNHFNLPKNPLGP 256
>sp|B9KKX4|TRUA_RHOSK tRNA pseudouridine synthase A OS=Rhodobacter sphaeroides (strain
KD131 / KCTC 12085) GN=truA PE=3 SV=1
Length = 255
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 180 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY 239
L A FL VR +V TL R A D + + +DA R A P PP+GL L VGY
Sbjct: 190 HLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>sp|Q0I4X5|TRUA_HAES1 tRNA pseudouridine synthase A OS=Haemophilus somnus (strain 129Pt)
GN=truA PE=3 SV=1
Length = 269
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V++ AN F+ MVR +V +L+ + + + L+ R AP A P+GL LV+
Sbjct: 181 IIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVE 240
Query: 237 VGYTN-FD-PQNSLIP 250
V Y N F+ P+N L P
Sbjct: 241 VKYPNHFNLPKNPLGP 256
>sp|Q814C2|TRUA1_BACCR tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=truA1 PE=3 SV=2
Length = 247
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 177 MCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVD 236
+ V N FL MVR++V TL+ D D++ +++ R+ AP GL L +
Sbjct: 183 IIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWE 242
Query: 237 VGYTN 241
V Y N
Sbjct: 243 VNYNN 247
>sp|A7NR34|TRUA_ROSCS tRNA pseudouridine synthase A OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=truA PE=3 SV=1
Length = 270
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 173 GRKVMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGL 232
G+ ++ +++ AN FLR MVR LV TL++ D D ++ RRA AP GL
Sbjct: 181 GQPLVLIDVAANAFLRHMVRNLVGTLIQVGEGRIDADGFAAVLAGANRRARV-LAPAHGL 239
Query: 233 CLVDVGY 239
L+ V Y
Sbjct: 240 YLMAVRY 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,559,792
Number of Sequences: 539616
Number of extensions: 3720993
Number of successful extensions: 9393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 8655
Number of HSP's gapped (non-prelim): 801
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)