RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044732
         (250 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 59.6 bits (143), Expect = 3e-11
 Identities = 45/244 (18%), Positives = 78/244 (31%), Gaps = 26/244 (10%)

Query: 16  IEDAINSAAPGKIRVI-------SVSQVSRVFHPNFSAKWRRYLYIFPLNDGENREQSID 68
           +E A++  A   I V         V    +V H   +A  +   +   +N     + ++ 
Sbjct: 33  LEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVR 92

Query: 69  SEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGK 128
               V +   +          Y    + L       G           R++   Q L G+
Sbjct: 93  WVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGE 152

Query: 129 LLSYKTFARDTKASRNIGPPTECFIYHARATEAILPCPVNDHGEGRKVMCVELVANRFLR 188
                  A   ++           +                       + V++ AN F+ 
Sbjct: 153 NDFTSFRAVQCQSRTPWRNVMHINVT-----------------RHGPYVVVDIKANAFVH 195

Query: 189 KMVRVLVATLVREAAAGADEDALLKLMDATCRRATAPPAPPEGLCLVDVGY-TNFD-PQN 246
            MVR +V +L+   A    E  + +L+ A  R   A  A  EGL LV V Y   +D P+ 
Sbjct: 196 HMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKP 255

Query: 247 SLIP 250
            + P
Sbjct: 256 PMGP 259


>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 34 SQVSRVFHPNF-SAKWRRYLYIFPLNDGENREQ 65
          +  +R  H  F SA WR Y+ +    D   +E+
Sbjct: 51 ALENRTCHWGFDSANWRAYILL--SQDYTGKEE 81


>d1vj1a1 b.35.1.2 (A:-1-124,A:312-351) Putative zinc-binding alcohol
           dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 166

 Score = 25.1 bits (54), Expect = 7.3
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 222 ATAPPAPPEGLCLVDVGYTNFDP 244
            +   A  EG   V   Y + DP
Sbjct: 30  FSLLDALNEGQVQVRTLYLSVDP 52


>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 477

 Score = 25.4 bits (54), Expect = 9.6
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 18  DAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGENR 63
           +A+        R +  S+V +   P  S  W +  ++ P  D ++ 
Sbjct: 69  EALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDI 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 924,476
Number of extensions: 40661
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 6
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)