BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044733
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 32 NIMKPGYDLTTRFEASGGLTECWNTLMELKSCSN-EIVVFFLNSQANIRPDY 82
N +KP R E+ GGL E WN + C+ + LN A RP Y
Sbjct: 18 NALKP----DNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSY 65
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 32 NIMKPGYDLTTRFEASGGLTECWNTLMELKSCSN-EIVVFFLNSQANIRPDY 82
N +KP R E+ GGL E WN + C+ + LN A RP Y
Sbjct: 18 NALKP----DNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSY 65
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b
Homotrimer
Length = 476
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 32 NIMKPGYDLTTRFEASGGLTECWNTLMELKSCSN-EIVVFFLNSQANIRPDY 82
N +KP R E+ GGL E WN + C+ + LN A RP Y
Sbjct: 18 NALKP----DNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSY 65
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 27 NDC-LNNI--MKPGYDLTTRFEASGGLTECWNT 56
N+C LNN+ ++P + R E+ GGL E WN+
Sbjct: 6 NECQLNNLNALEPDH----RVESEGGLIETWNS 34
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin
A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 27 NDC-LNNI--MKPGYDLTTRFEASGGLTECWNT 56
N+C LNN+ ++P + R E+ GGL E WN+
Sbjct: 7 NECQLNNLNALEPDH----RVESEGGLIETWNS 35
>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
Length = 131
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 30 LNNIMKPGYDLTTRFEASGGLTECWNTLMELKSCSNEIVVF 70
LN+ +KPG+ T + G L ++ + +C+N++ +F
Sbjct: 11 LNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLF 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,529,840
Number of Sequences: 62578
Number of extensions: 76112
Number of successful extensions: 183
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)