Query 044733
Match_columns 99
No_of_seqs 91 out of 93
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.9E-35 4E-40 209.6 7.6 90 1-98 1-93 (118)
2 PF05617 Prolamin_like: Prolam 99.6 4.2E-17 9.1E-22 103.4 2.0 46 52-97 1-47 (70)
3 PF07172 GRP: Glycine rich pro 94.1 0.045 9.7E-07 37.5 2.4 8 1-8 1-8 (95)
4 PLN00214 putative protein; Pro 92.8 0.18 4E-06 36.1 3.9 40 50-93 36-76 (115)
5 PF10731 Anophelin: Thrombin i 65.1 7.6 0.00016 25.3 2.6 26 1-30 1-26 (65)
6 cd04660 nsLTP_like nsLTP_like: 42.4 21 0.00045 22.5 1.8 17 77-93 23-39 (73)
7 smart00499 AAI Plant lipid tra 40.8 15 0.00032 21.7 1.0 18 77-94 23-41 (79)
8 cd01960 nsLTP1 nsLTP1: Non-spe 39.3 29 0.00062 22.4 2.2 34 53-91 3-37 (89)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 38.7 33 0.00071 20.4 2.3 21 71-91 7-28 (63)
10 PF14368 LTP_2: Probable lipid 26.8 26 0.00057 22.1 0.4 23 71-93 35-60 (96)
11 PF15284 PAGK: Phage-encoded v 24.9 94 0.002 20.1 2.7 14 3-16 4-17 (61)
12 PF00234 Tryp_alpha_amyl: Prot 22.0 51 0.0011 20.8 1.1 24 70-93 20-44 (90)
13 KOG0897 Predicted ubiquitin-co 21.6 63 0.0014 23.4 1.6 46 33-78 25-82 (122)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=209.61 Aligned_cols=90 Identities=27% Similarity=0.493 Sum_probs=80.4
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhcccCcccccccCCCCCcccccccCC--ChhhHhhhhhcccchHHHHHHHHHhCcc-c
Q 044733 1 MALKHVFSILALTCLIMETIANATSRNDCLNNIMKPGYDLTTRFEASG--GLTECWNTLMELKSCSNEIVVFFLNSQA-N 77 (99)
Q Consensus 1 Ma~k~~~~~l~v~~i~~~~~A~~~~~~~~p~~~~~~~~~l~~~l~~~g--~~~kCwssl~~v~gC~~EI~~sf~nG~~-~ 77 (99)
|++|||+++|+++||++++||| ++|+|.++++|++.+ + .+| |+.||||||+++|||+.||++++++||| +
T Consensus 1 m~iknV~~ll~v~cIvvsVna~---lpqf~~~fp~~~p~~--~--~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~ 73 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQ---LPQFPAQLPFLFPFQ--L--IPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGN 73 (118)
T ss_pred CchHHHHHHHHHHHHHheeccC---CCCCCCCCCCCCCcc--C--CCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcc
Confidence 9999999999999999999999 889988877766321 1 333 8999999999999999999999999999 9
Q ss_pred cChhhhHHHHHhhhcccCCCC
Q 044733 78 IRPDYCRAIDIITRNCWPAMP 98 (99)
Q Consensus 78 igp~CCkAi~~i~~~CwP~mf 98 (99)
||++|||||++.+ ||||+|.
T Consensus 74 Ig~aCCKAf~~~d-nCwP~~P 93 (118)
T PLN00213 74 LGPACCKAFLDAD-NCIPKIP 93 (118)
T ss_pred cchHHHHHHHhhh-ccccCCc
Confidence 9999999999966 9999974
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.65 E-value=4.2e-17 Score=103.38 Aligned_cols=46 Identities=33% Similarity=0.786 Sum_probs=44.1
Q ss_pred hHhhhhhcccchHHHHHHHHHhCcc-ccChhhhHHHHHhhhcccCCC
Q 044733 52 ECWNTLMELKSCSNEIVVFFLNSQA-NIRPDYCRAIDIITRNCWPAM 97 (99)
Q Consensus 52 kCwssl~~v~gC~~EI~~sf~nG~~-~igp~CCkAi~~i~~~CwP~m 97 (99)
|||+++.++++|+.||+.+|++|+. +||++||++|+.++++|||+|
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l 47 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPAL 47 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHH
Confidence 6999999999999999999999985 999999999999999999994
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.06 E-value=0.045 Score=37.51 Aligned_cols=8 Identities=38% Similarity=0.293 Sum_probs=5.8
Q ss_pred CchhHHHH
Q 044733 1 MALKHVFS 8 (99)
Q Consensus 1 Ma~k~~~~ 8 (99)
||+|.+++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 99888544
No 4
>PLN00214 putative protein; Provisional
Probab=92.79 E-value=0.18 Score=36.12 Aligned_cols=40 Identities=15% Similarity=0.434 Sum_probs=31.7
Q ss_pred hhhHhhhhhcccchHHHHHHHHH-hCccccChhhhHHHHHhhhcc
Q 044733 50 LTECWNTLMELKSCSNEIVVFFL-NSQANIRPDYCRAIDIITRNC 93 (99)
Q Consensus 50 ~~kCwssl~~v~gC~~EI~~sf~-nG~~~igp~CCkAi~~i~~~C 93 (99)
...|---+. +-|..||+..++ ||. ....||+-+...+++|
T Consensus 36 ~~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~C 76 (115)
T PLN00214 36 WNTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVC 76 (115)
T ss_pred HHHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHH
Confidence 445654444 679999999999 444 4889999999999998
No 5
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=65.12 E-value=7.6 Score=25.32 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhcccCccc
Q 044733 1 MALKHVFSILALTCLIMETIANATSRNDCL 30 (99)
Q Consensus 1 Ma~k~~~~~l~v~~i~~~~~A~~~~~~~~p 30 (99)
||.|.++ ++++|++..+..| +.||+.
T Consensus 1 MA~Kl~v--ialLC~aLva~vQ--~APQYa 26 (65)
T PF10731_consen 1 MASKLIV--IALLCVALVAIVQ--SAPQYA 26 (65)
T ss_pred CcchhhH--HHHHHHHHHHHHh--cCcccC
Confidence 8888764 3344444333345 456663
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=42.43 E-value=21 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.8
Q ss_pred ccChhhhHHHHHhhhcc
Q 044733 77 NIRPDYCRAIDIITRNC 93 (99)
Q Consensus 77 ~igp~CCkAi~~i~~~C 93 (99)
.-+++||.+++..+..|
T Consensus 23 ~Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 23 PPSRECCAALRRADLPC 39 (73)
T ss_pred CCCHHHHHHHHcCCcCC
Confidence 46778999999887666
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=40.82 E-value=15 Score=21.70 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=14.2
Q ss_pred ccChhhhHHHHHh-hhccc
Q 044733 77 NIRPDYCRAIDII-TRNCW 94 (99)
Q Consensus 77 ~igp~CCkAi~~i-~~~Cw 94 (99)
.-...||..++.+ ...|.
T Consensus 23 ~p~~~CC~~l~~~~~~~C~ 41 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCR 41 (79)
T ss_pred CCchHHHHHHHHhcccCCc
Confidence 5668899999998 77674
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=39.26 E-value=29 Score=22.35 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=22.8
Q ss_pred HhhhhhcccchHHHHHHHHHhCcc-ccChhhhHHHHHhhh
Q 044733 53 CWNTLMELKSCSNEIVVFFLNSQA-NIRPDYCRAIDIITR 91 (99)
Q Consensus 53 Cwssl~~v~gC~~EI~~sf~nG~~-~igp~CCkAi~~i~~ 91 (99)
|=..+..+..|.. |++|.. .-++.||.+++.+.+
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 4555556666643 445554 788899999998753
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=38.67 E-value=33 Score=20.36 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=15.9
Q ss_pred HHhCc-cccChhhhHHHHHhhh
Q 044733 71 FLNSQ-ANIRPDYCRAIDIITR 91 (99)
Q Consensus 71 f~nG~-~~igp~CCkAi~~i~~ 91 (99)
|++|. ..-.+.||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 44555 3788899999999854
No 10
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=26.81 E-value=26 Score=22.12 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHhCccccChhhhHHHHHh---hhcc
Q 044733 71 FLNSQANIRPDYCRAIDII---TRNC 93 (99)
Q Consensus 71 f~nG~~~igp~CCkAi~~i---~~~C 93 (99)
+.++...-.+.||.+++.+ +.+|
T Consensus 35 ~~~~~~~Ps~~CC~~l~~~~~~~~~C 60 (96)
T PF14368_consen 35 YVTGGPAPSAACCSALKSVVQADPPC 60 (96)
T ss_dssp HHCC-----HHHHHHHCC----HCCH
T ss_pred ccCCCCCCCHHHHHHHHHhccCCCCC
Confidence 4556668999999999997 6555
No 11
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.86 E-value=94 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHH
Q 044733 3 LKHVFSILALTCLI 16 (99)
Q Consensus 3 ~k~~~~~l~v~~i~ 16 (99)
+|++|+.+++++.+
T Consensus 4 ~ksifL~l~~~LsA 17 (61)
T PF15284_consen 4 FKSIFLALVFILSA 17 (61)
T ss_pred HHHHHHHHHHHHHH
Confidence 67887755555444
No 12
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=22.00 E-value=51 Score=20.75 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=17.7
Q ss_pred HHHhCcc-ccChhhhHHHHHhhhcc
Q 044733 70 FFLNSQA-NIRPDYCRAIDIITRNC 93 (99)
Q Consensus 70 sf~nG~~-~igp~CCkAi~~i~~~C 93 (99)
.+..|.. ..-..||..++.++..|
T Consensus 20 ~~~~~~~~~~~~~CC~~L~~l~~~C 44 (90)
T PF00234_consen 20 PYLQGGCQQPSQQCCQQLRQLDPQC 44 (90)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHhHHHHHHhHHh
Confidence 3455554 57788999999988776
No 13
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=63 Score=23.44 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=35.8
Q ss_pred ccCCCCCcccccccCC-----C-------hhhHhhhhhcccchHHHHHHHHHhCcccc
Q 044733 33 IMKPGYDLTTRFEASG-----G-------LTECWNTLMELKSCSNEIVVFFLNSQANI 78 (99)
Q Consensus 33 ~~~~~~~l~~~l~~~g-----~-------~~kCwssl~~v~gC~~EI~~sf~nG~~~i 78 (99)
++.|++....|+.++| + ..+=|+|=.+++.|.-+|......|+..|
T Consensus 25 ~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri 82 (122)
T KOG0897|consen 25 FMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARI 82 (122)
T ss_pred CCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeE
Confidence 3447887778876444 1 33679999999999999999999999754
Done!